Citrus Sinensis ID: 030149
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | 2.2.26 [Sep-21-2011] | |||||||
| Q96361 | 182 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.917 | 9e-97 | |
| P40940 | 182 | ADP-ribosylation factor 3 | yes | no | 1.0 | 1.0 | 0.912 | 2e-96 | |
| Q06396 | 181 | ADP-ribosylation factor 1 | no | no | 0.983 | 0.988 | 0.636 | 9e-66 | |
| P51823 | 181 | ADP-ribosylation factor 2 | no | no | 0.972 | 0.977 | 0.638 | 2e-65 | |
| P51821 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.972 | 0.977 | 0.638 | 7e-65 | |
| O48920 | 181 | ADP-ribosylation factor O | N/A | no | 0.983 | 0.988 | 0.625 | 1e-64 | |
| P51822 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.983 | 0.988 | 0.625 | 1e-64 | |
| P36397 | 181 | ADP-ribosylation factor 1 | no | no | 0.983 | 0.988 | 0.625 | 2e-64 | |
| P25160 | 180 | ADP-ribosylation factor-l | yes | no | 0.939 | 0.95 | 0.672 | 2e-64 | |
| P0DH91 | 181 | ADP-ribosylation factor 2 | no | no | 0.972 | 0.977 | 0.627 | 3e-64 |
| >sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 352 bits (903), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 167/182 (91%), Positives = 178/182 (97%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQA+IYVVDSSDT+R+ +AK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIK+RQWAIFKT A+KGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
G
Sbjct: 181 SG 182
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Brassica rapa subsp. pekinensis (taxid: 51351) |
| >sp|P40940|ARF3_ARATH ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/182 (91%), Positives = 178/182 (97%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQA+IYVVDSSDT+R+ +AK+EFHAILEE+EL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIK+RQWAIFKT A+KGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
G
Sbjct: 181 SG 182
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 114/179 (63%), Positives = 142/179 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 141/177 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 140/177 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+ S LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNL 177
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 142/179 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGL+WLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Vigna unguiculata (taxid: 3917) |
| >sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 141/179 (78%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A + + L LH ++ R W I T A GEGL+EGLDWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Daucus carota (taxid: 4039) |
| >sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 141/179 (78%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F +LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|P25160|ARL1_DROME ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=2 SV=5 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 138/171 (80%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68
F L G++E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDL
Sbjct: 8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 67
Query: 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
GGQTSIRPYWRCY+ NT AIIYVVDS+D +R+ I+KDE +L EEEL GA++++ ANKQ
Sbjct: 68 GGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQ 127
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
D+ G + A V AL L +KNR + IFKTSA KGEGL + +DWLSNTL+S
Sbjct: 128 DMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178
|
Binds and hydrolyzes GTP. Does not act as an allosteric activator of the cholera toxin catalytic subunit. Drosophila melanogaster (taxid: 7227) |
| >sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/177 (62%), Positives = 140/177 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F +LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| 225446168 | 182 | PREDICTED: ADP-ribosylation factor 1 [Vi | 1.0 | 1.0 | 0.961 | 1e-98 | |
| 224117610 | 182 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.956 | 6e-98 | |
| 224142287 | 182 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.950 | 7e-98 | |
| 356562475 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 1.0 | 1.0 | 0.961 | 8e-98 | |
| 449462681 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 1.0 | 1.0 | 0.945 | 1e-97 | |
| 358249126 | 182 | uncharacterized protein LOC100815426 [Gl | 1.0 | 1.0 | 0.956 | 2e-97 | |
| 357479799 | 182 | ADP-ribosylation factor [Medicago trunca | 1.0 | 1.0 | 0.950 | 2e-97 | |
| 388497350 | 182 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.950 | 4e-97 | |
| 255642561 | 182 | unknown [Glycine max] | 1.0 | 1.0 | 0.950 | 4e-97 | |
| 225430573 | 181 | PREDICTED: ADP-ribosylation factor 1 [Vi | 0.994 | 1.0 | 0.928 | 2e-95 |
| >gi|225446168|ref|XP_002277581.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|297735327|emb|CBI17767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/182 (96%), Positives = 181/182 (99%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSSLFGN+EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSLFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+RLVIAKDEFHAIL+EEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKDEFHAILQEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117610|ref|XP_002331679.1| predicted protein [Populus trichocarpa] gi|222874098|gb|EEF11229.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/182 (95%), Positives = 180/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI F+++FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIFFSKMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+RLVIAKDEFHAILEEEELRGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKDEFHAILEEEELRGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLI+ANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIYANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142287|ref|XP_002324490.1| predicted protein [Populus trichocarpa] gi|222865924|gb|EEF03055.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/182 (95%), Positives = 180/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+++FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFSKMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD +RLVIAKDEFHAILEEEELRGA+
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVIAKDEFHAILEEEELRGAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562475|ref|XP_003549496.1| PREDICTED: ADP-ribosylation factor 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/182 (96%), Positives = 180/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FT+LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIVFTKLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD +RLVIAK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462681|ref|XP_004149069.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] gi|449519531|ref|XP_004166788.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/182 (94%), Positives = 179/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+RLV+A++EFHAILEEEELRGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVVAREEFHAILEEEELRGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
L+FANKQDLPGALDDAAVTEALELHKIKNRQWAIFK SAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 ALVFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKASAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249126|ref|NP_001239997.1| uncharacterized protein LOC100815426 [Glycine max] gi|255644587|gb|ACU22796.1| unknown [Glycine max] gi|255646651|gb|ACU23799.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/182 (95%), Positives = 180/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++FT+LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGLVFTKLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD +RLVIAK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479799|ref|XP_003610185.1| ADP-ribosylation factor [Medicago truncatula] gi|355511240|gb|AES92382.1| ADP-ribosylation factor [Medicago truncatula] gi|388496430|gb|AFK36281.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/182 (95%), Positives = 181/182 (99%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++FTRLFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+RLVIA++EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAREEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTE+LELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTESLELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497350|gb|AFK36741.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/182 (95%), Positives = 180/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++FTRLFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+RLVIAK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQW+IFK SAIKGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWSIFKISAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255642561|gb|ACU21544.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/182 (95%), Positives = 179/182 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FT+LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIVFTKLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD +RLV+AK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVVAKEEFHAILEEEELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL NTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLGNTLKSG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430573|ref|XP_002263625.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|296082183|emb|CBI21188.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 178/181 (98%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSS+FGN+EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT+R+VIAKDEFHAILEEEEL+GA+
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRIVIAKDEFHAILEEEELKGAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAA+TEALELHKIKNRQWAIFKT AIKGEGL+EGLDWLSN LKS
Sbjct: 121 VLIFANKQDLPGALDDAALTEALELHKIKNRQWAIFKTCAIKGEGLYEGLDWLSNILKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| TAIR|locus:2827399 | 182 | ARF3 "ADP-ribosylation factor | 1.0 | 1.0 | 0.912 | 6.7e-88 | |
| DICTYBASE|DDB_G0288163 | 183 | arl1 "ARF-like protein" [Dicty | 1.0 | 0.994 | 0.681 | 7.4e-66 | |
| MGI|MGI:99436 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.664 | 1.6e-61 | |
| RGD|621326 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.664 | 1.6e-61 | |
| UNIPROTKB|P61212 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.664 | 1.6e-61 | |
| UNIPROTKB|P40616 | 181 | ARL1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.659 | 2.7e-61 | |
| UNIPROTKB|G1R2Y8 | 181 | ARL1 "Uncharacterized protein" | 0.983 | 0.988 | 0.659 | 2.7e-61 | |
| ZFIN|ZDB-GENE-040718-175 | 181 | arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.664 | 2.7e-61 | |
| UNIPROTKB|Q2YDM1 | 181 | ARL1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.659 | 3.4e-61 | |
| UNIPROTKB|E2RG67 | 181 | ARL1 "Uncharacterized protein" | 0.983 | 0.988 | 0.659 | 3.4e-61 |
| TAIR|locus:2827399 ARF3 "ADP-ribosylation factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 166/182 (91%), Positives = 178/182 (97%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNTQA+IYVVDSSDT+R+ +AK+EFHAILEE+EL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VLIFANKQDLPGALDDAAVTEALELHKIK+RQWAIFKT A+KGEGLFEGLDWLSNTLKS
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
Query: 181 GG 182
G
Sbjct: 181 SG 182
|
|
| DICTYBASE|DDB_G0288163 arl1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 124/182 (68%), Positives = 151/182 (82%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG +F+ +F LFGNK+ RIL+LGLD+AGKTTILY+LQ GEV++TIPTIGFNVE++ Y N
Sbjct: 1 MGNLFSSVFFKLFGNKDVRILILGLDSAGKTTILYKLQCGEVLTTIPTIGFNVESITYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I+F +WDLGGQ++IRPYWRCY+PNT AIIYVVDSSD +RL IA +E A+L EEELR
Sbjct: 61 IRFFLWDLGGQSAIRPYWRCYYPNTNAIIYVVDSSDPDRLGIANEELVAMLSEEELRTTP 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+L+FANKQDLPGAL DA V+E L+L +KNRQWAIFKTSAI G G++EGLDWL N +
Sbjct: 121 LLVFANKQDLPGALSDAQVSEGLKLSSLKNRQWAIFKTSAINGVGIYEGLDWLVNVISGG 180
Query: 181 GG 182
GG
Sbjct: 181 GG 182
|
|
| MGI|MGI:99436 Arl1 "ADP-ribosylation factor-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 119/179 (66%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + AL L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| RGD|621326 Arl1 "ADP-ribosylation factor-like 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 119/179 (66%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + AL L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| UNIPROTKB|P61212 Arl1 "ADP-ribosylation factor-like protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 119/179 (66%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + AL L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| UNIPROTKB|P40616 ARL1 "ADP-ribosylation factor-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 118/179 (65%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| UNIPROTKB|G1R2Y8 ARL1 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 118/179 (65%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| ZFIN|ZDB-GENE-040718-175 arl1 "ADP-ribosylation factor-like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 119/179 (66%), Positives = 144/179 (80%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ LFS LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSLFSGLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDSSD +R+ I+K E A+LEEEEL+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ V AL L +K+R+W IFKTSA KG GL E ++WL +LKS
Sbjct: 121 LVVFANKQDMEQAMTPTEVANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVESLKS 179
|
|
| UNIPROTKB|Q2YDM1 ARL1 "ADP-ribosylation factor-like protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 118/179 (65%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| UNIPROTKB|E2RG67 ARL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 118/179 (65%), Positives = 145/179 (81%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+++FANKQD+ A+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.6256 | 0.9835 | 0.9889 | N/A | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.6145 | 0.9835 | 0.9781 | N/A | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.6256 | 0.9835 | 0.9889 | N/A | no |
| Q7RVM2 | ARF_NEUCR | No assigned EC number | 0.6136 | 0.9670 | 0.9513 | N/A | no |
| P40616 | ARL1_HUMAN | No assigned EC number | 0.6606 | 0.9065 | 0.9116 | yes | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.6256 | 0.9835 | 0.9835 | N/A | no |
| P84082 | ARF2_RAT | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | yes | no |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.6201 | 0.9835 | 0.9889 | yes | no |
| P84081 | ARF2_BOVIN | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | yes | no |
| P84080 | ARF1_BOVIN | No assigned EC number | 0.6089 | 0.9835 | 0.9889 | yes | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.6 | 0.9615 | 0.9776 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.6256 | 0.9835 | 0.9889 | N/A | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.6384 | 0.9725 | 0.9779 | N/A | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.6033 | 0.9835 | 0.9944 | yes | no |
| P51824 | ARF1_SOLTU | No assigned EC number | 0.5977 | 0.9835 | 0.9086 | N/A | no |
| Q96361 | ARF1_BRARP | No assigned EC number | 0.9175 | 1.0 | 1.0 | N/A | no |
| P25160 | ARL1_DROME | No assigned EC number | 0.6725 | 0.9395 | 0.95 | yes | no |
| P38116 | ARL1_YEAST | No assigned EC number | 0.6201 | 0.9780 | 0.9726 | yes | no |
| P84079 | ARF1_RAT | No assigned EC number | 0.6089 | 0.9835 | 0.9889 | yes | no |
| P84078 | ARF1_MOUSE | No assigned EC number | 0.6089 | 0.9835 | 0.9889 | yes | no |
| P40940 | ARF3_ARATH | No assigned EC number | 0.9120 | 1.0 | 1.0 | yes | no |
| P61207 | ARF3_TAKRU | No assigned EC number | 0.6033 | 0.9835 | 0.9889 | N/A | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | N/A | no |
| Q8BSL7 | ARF2_MOUSE | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | yes | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.6145 | 0.9835 | 0.9889 | N/A | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.6089 | 0.9835 | 0.9889 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.5856 | 0.9945 | 0.9890 | N/A | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.6214 | 0.9725 | 0.9779 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 182 | |||
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 1e-113 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-109 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-92 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-88 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 3e-88 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 4e-87 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 1e-85 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 3e-85 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 7e-84 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-74 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 5e-72 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-59 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 4e-59 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-55 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-55 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 1e-53 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-45 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 2e-44 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-35 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 6e-34 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-30 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-23 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-20 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-17 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 2e-14 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 4e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-11 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 8e-11 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 2e-09 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 5e-09 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 2e-08 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 5e-08 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-07 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-07 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 5e-07 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 6e-07 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 7e-07 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-06 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-06 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 4e-06 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 4e-06 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 4e-06 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 5e-06 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 7e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 8e-06 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 9e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 9e-06 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 2e-05 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 2e-05 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 2e-05 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 4e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 5e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 7e-05 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 1e-04 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 2e-04 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 2e-04 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 3e-04 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 4e-04 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 0.001 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 0.002 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 0.002 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 0.002 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 0.003 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 0.003 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = e-113
Identities = 119/158 (75%), Positives = 137/158 (86%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYW
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
RCY+ NT AIIYVVDS+D +RL I+K E HA+LEEEEL+ AV+L+FANKQD+PGAL +A
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
V E L L ++K+R W IFKTSA KGEGL EG+DWL NT
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = e-109
Identities = 112/174 (64%), Positives = 139/174 (79%), Gaps = 1/174 (0%)
Query: 5 FTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
F + + LFG NKE RIL+LGLDNAGKTTILY+L++GE+V+TIPTIGFNVETV Y N+KF
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
VWD+GGQ S+RP WR YFPNT A+I+VVDS+D +R+ AK+E HA+L EEEL A +LI
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
ANKQDLPGA+ +A + E L LH++K+R W I SA+ GEGL EGLDWLSN +
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 2e-92
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILY+L++GEVV+TIPTIGFNVETV+Y N+KF VWD+GGQ IRP W
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
+ Y+ NT +I+VVDSSD ER+ AK+E H +L EEEL+GA +LI ANKQDLPGAL ++
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ E L L IK R+W I SA+ G+GL EGLDWL
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 2e-88
Identities = 112/179 (62%), Positives = 142/179 (79%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ FT+LFS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D +R+V A+DE H +L E+ELR AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH ++ R W I T A GEGL+EGLDWLSN + +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
|
Length = 181 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 3e-88
Identities = 103/180 (57%), Positives = 133/180 (73%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ + F SLFG KE RIL++GLD AGKTTILY+L++GEVV+TIPTIGFNVETV+Y N
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+KF +WD+GGQ +RP WR Y+ NT +I+VVDS+D ER+ A++E +L E+ELR AV
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+L+FANKQDLP A+ VTE L LH ++ R W I A +GL+EGLDWLS +K
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180
|
Length = 182 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 4e-87
Identities = 100/158 (63%), Positives = 125/158 (79%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP A+ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
VT+ L LH ++NR W I T A G+GL+EGLDWLSN
Sbjct: 122 VTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 249 bits (636), Expect = 1e-85
Identities = 109/175 (62%), Positives = 136/175 (77%)
Query: 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQ 64
+LFS LFGNKE RIL++GLD AGKTTILY+L++GE V+TIPTIGFNVETV Y NI F
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60
Query: 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124
VWD+GGQ IRP WR Y+ NTQ +I+VVDS+D +R+ A++E H +L E+ELR AV+L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120
Query: 125 ANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
ANKQDLP A+ A +TE L LH I++R W I T A G+GL+EGL WLSN LK+
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 3e-85
Identities = 94/167 (56%), Positives = 126/167 (75%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68
S LFGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60
Query: 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
GGQ IRP WR Y+ TQ +I+VVDS+D +R+ A+ E H I+ + E+R A++L+FANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
DLP A+ + E L L +I++R W + + A G+GL+EGL WLS+
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 7e-84
Identities = 88/174 (50%), Positives = 125/174 (71%)
Query: 3 IMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK 62
++F+ L+S F KE +++++GLDNAGKTTILY+ +GEVV T PTIG NVE + Y NI+
Sbjct: 1 LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL 122
F +WD+GGQ S+R W Y+ NT A+I V+DS+D ERL + K+E + +L E+LR AV+L
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120
Query: 123 IFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
+ ANKQDL GA+ A ++E+L L I++ W I A+ GEGL EGLDW+++
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 1e-74
Identities = 92/161 (57%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLDNAGKTTIL + GE +STI PT+GFN++T++YN K +WD+GGQ S+
Sbjct: 13 REMRILMLGLDNAGKTTILKKFN-GEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R YWR YF +T A+I+VVDSSD RL K E +L EE L GA +LIFANKQDLPGAL
Sbjct: 72 RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
+ E LEL IK+ W IF SA+ GE L +G+DWL +
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 5e-72
Identities = 85/159 (53%), Positives = 106/159 (66%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLDNAGKTTIL +L ++ PT GFN++ VQ + K VWD+GGQ I
Sbjct: 13 RQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKI 72
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RPYWR YF NT +IYV+DS+D +R A E +LEEE+L G VL+FANKQDL A
Sbjct: 73 RPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAA 132
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
V EAL LH I++R W I SA GEGL EG++W+
Sbjct: 133 PAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 2e-59
Identities = 87/164 (53%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
R++ LGLD AGKTTIL++L+ E + IPTIGFNVETV+Y N+KF +WD+GG+ +RP W
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
+ Y+ NTQA+++V+DSS +R+ A E +L E+ELR A++LIFANKQD+ GAL
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 VTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181
+TE L LHK+ R W I A G GL+EGLDWLS L + G
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-59
Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPY 77
++L+LGLD+AGK+T+LY+L+ E+V+TIPT+GFNVE +Q ++ VWD+GGQ +R
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA 137
W+CY NT ++YVVDSSD RL ++ E IL+ E ++G V++ ANKQDLPGAL
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 AVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGL 170
+T +L K +R W + SA+ GEGL E
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-55
Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 4/161 (2%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
ILVLGLDN+GKTTI+ +L+ S PT+GFNVE+ + N+ F +D+ GQ R
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQDLPGALD 135
W Y+ N Q II+V+DSSD R+V+AKDE +L ++ R +L +ANK DLP AL
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
+T+ L L IK++ W IF +SA+ GEGL EG+DWL
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQAQ 162
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-55
Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 4 MFTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK 62
F + SSL KEA+I+ LGLDNAGKTT+L+ L+ + +PT+ E + N+K
Sbjct: 5 WFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVK 64
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL 122
F +DLGG R W+ YFP I+++VD++D ER +K+E ++L +EEL +L
Sbjct: 65 FTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPIL 124
Query: 123 IFANKQDLPGALDDAAVTEALELHK------------IKNRQWAIFKTSAIKGEGLFEGL 170
I NK D PGA+ + + EAL L+ R +F S +K +G EG
Sbjct: 125 ILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGF 184
Query: 171 DWLS 174
WLS
Sbjct: 185 RWLS 188
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-53
Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-----IKFQVWDLGGQTSI 74
I++LGLD+AGKTT+LYRL+ E V+T+PT GFN E ++ + + F WD+GGQ +
Sbjct: 6 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RP W+ Y T I++VVDS D ER+ AK E H I + E +G VL+ ANKQDLP AL
Sbjct: 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125
Query: 135 DDAAVTEALELHKIKN-RQWAIFKTSAIKGEGLFEGLDWL 173
+ V + L LH++ + W + AI GEGL EGL+ L
Sbjct: 126 PVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKL 165
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-45
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
I ++GL N+GKTT++ + G+ TIPT+GFN+ V N+ +VWDLGGQ R W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
Y AI+YVVD++D E+L +AK+E H +LE+ L G +L+ NK DLPGAL
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+ E + L I +R+ + + SA + + LDWL
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWL 156
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-44
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 20 ILVLGLDNAGKTTILYRLQM-------GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQ 71
+L+LGLDNAGKTT L + + G S I PT+G N+ T++ + WDLGGQ
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
+R W Y+ + +IYV+DS+D ER +K F ++ E L G +L+ ANKQDLP
Sbjct: 62 EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121
Query: 132 GALDDAAVTEALE--LHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
AL A + E + + I R + SA++GEG+ EG++WL
Sbjct: 122 DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-35
Identities = 67/167 (40%), Positives = 87/167 (52%), Gaps = 7/167 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
NK A+IL LGLDNAGKTT+L+ L+ + PT E + NIKF +DLGG
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W+ YFP I+Y+VD+ D ER +K E A+L +EEL LI NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 135 DDAAVTEALELH-------KIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
+ + AL L K+ R +F S ++ G EG WLS
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-34
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
ILVLGLD AGKT++L+ L E S +PT GFN + + ++ ++GG ++R Y
Sbjct: 2 ILVLGLDGAGKTSLLHSL-SSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA 137
W+ Y +Q +I+VVDS+D+ERL +A+ E H +L+ +++ ANKQDLP A
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118
Query: 138 AVTEALELHKIKN-RQWAIFKTSAIK 162
+ + LEL I R+W + TS
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-30
Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
+L +GLDNAGKTT++ LQ PT+GF ++ + + ++DLGG + R W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV 139
Y+ +++VVDSSD +R+ K+ +L+ + G +L+ ANKQD AL A V
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 TEALELHKIKNRQWA---IFKTSAIKGEG------LFEGLDWL 173
E L L K+ N + I SAI+G G + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 1e-23
Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNV----ETVQYNNIKFQVWD 67
KE +I+VLG GKTT+L RL E PTIG NIK Q+WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
GQ R Y+ I+ V DS+ E +E+ L E +L+ NK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 128 QDLPGALD 135
DL
Sbjct: 121 IDLFDEQS 128
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-20
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 21 LVLGLDNAGKTTILYRL--QMGEVVSTIP--TIGFNVETVQY--NNIKFQVWDLGGQTSI 74
+V+G GK+++L L VS +P T +V + +K + D G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 75 RPYWRC-----YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129
R I+ VVDS+D E AK L +E + +++ NK D
Sbjct: 61 GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKID 117
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
L + + EL KI +F+ SA GEG+ E + L
Sbjct: 118 LLEEREVEELLRLEELAKILGVP--VFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-17
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 17 EARILVLGLDNAGKTTILYRL--QMGEVVSTIPTIGFNVET--VQYNN--IKFQVWDLGG 70
E +I+++G N GK+T+L RL + P N T ++ + KF + D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR-----GAVVLI 123
Q R Y+ ++ + V D +VI + ILE+ +E+ G +++
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFD------IVILVLDVEEILEKQTKEIIHHAESGVPIIL 114
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166
NK DL A V K I SA G+ +
Sbjct: 115 VGNKIDLRDAKLKTHVAFLFA----KLNGEPIIPLSAETGKNI 153
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-14
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI----KFQVWDLGGQTSIR 75
+L+LG ++GKT + +L G+V ST+ +I NV Y+N K + D+ G +R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNV-ASFYSNSSKGKKLTLVDVPGHEKLR 61
Query: 76 PYWRCYFPN-TQAIIYVVDSSDTERLVIAKDEF-HAILEEEELRGAV--VLIFANKQDLP 131
Y +AI++VVDS+ ++ + EF + IL + E +LI NKQDL
Sbjct: 62 DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLF 121
Query: 132 GALDDAAVTEAL--ELHKIK 149
A + E L E++ ++
Sbjct: 122 TAKPAKKIKELLEKEINTLR 141
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-14
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 23/180 (12%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-------------TIGFNVETV 56
S+ E +I+V+G AGKTT + L +V T T+ + ++
Sbjct: 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI 62
Query: 57 QYNNIKFQVW--DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEE 114
+ + V GQ + W I +VDSS I I
Sbjct: 63 ELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP----ITFHAEEIIDFLT 117
Query: 115 ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
V++ NKQDL AL + EAL+L + + A +GEG + LD L
Sbjct: 118 SRNPIPVVVAINKQDLFDALPPEKIREALKLE---LLSVPVIEIDATEGEGARDQLDVLL 174
|
Length = 187 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 3e-11
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ-- 71
+I+++G GKT++L R + + TIG F +T++ + +K Q+WD GQ
Sbjct: 2 KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQER 61
Query: 72 -TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIF 124
SI Y+ I V D ++ ++ F + L+E +++
Sbjct: 62 FRSITSS---YYRGAHGAILVYDVTN-------RESFENLDKWLNELKEYAPPNIPIILV 111
Query: 125 ANKQDLPGALDDAAVT--EALELHKIKNRQWAIFKTSAIKGEG---LFEGL 170
NK DL D+ V+ EA + K + F+TSA GE FE L
Sbjct: 112 GNKSDLE---DERQVSTEEAQQFAKENGLLF--FETSAKTGENVDEAFESL 157
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-11
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD--------- 96
+ T G + +KF+++D+GGQ S R W F + AII+VV S+
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 97 -TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
T RL + + F I + +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-09
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 35/160 (21%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQ-- 71
+++++G GK+++L R + IPTIG F +T++ + +K Q+WD GQ
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 72 -TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI--LEEEELR----GAVVLIF 124
++RP Y+ Q + V D + ++D F + EE LR +++
Sbjct: 61 FRALRPL---YYRGAQGFLLVYD-------ITSRDSFENVKKWLEEILRHADENVPIVLV 110
Query: 125 ANKQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
NK DL D V+ E L K + + +TSA
Sbjct: 111 GNKCDL---EDQRVVSTEEGEALAK----ELGLPFMETSA 143
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-09
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+ ++++LG + GK++I+ R E TIG F +TV ++ +KF++WD GQ
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK---DEFHAILEEEELRGAVVLIFANKQ 128
R Y+ A I V D + E AK E L+E V+ + NK
Sbjct: 61 ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKE----LQEHGPPNIVIALAGNKA 116
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFK-TSAIKGEG---LFEGL 170
DL V+ E + + +F TSA GE LF +
Sbjct: 117 DL---ESKRQVSTE-EAQEYADENGLLFMETSAKTGENVNELFTEI 158
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-08
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 19 RILVLGLDNAGKTT----ILYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTS 73
++L++GL +GK++ I + + TI V++ N+ +WD GQ
Sbjct: 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60
Query: 74 I-RPYWR----CYFPNTQAIIYVVDSSDTE 98
Y F N +IYV D E
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-08
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+I+V+G N GKT + YR G T TIG F TV+ + IK Q+WD GQ
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63
Query: 74 IRP-----YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRGAVVLI-- 123
R Y+R N A+++V D V FH++ +EE E +
Sbjct: 64 FRKSMVQHYYR----NVHAVVFVYD-------VTNMASFHSLPSWIEECEQHSLPNEVPR 112
Query: 124 --FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
NK DL + V L +F+TSA
Sbjct: 113 ILVGNKCDL---REQIQVPTDLAQRFADAHSMPLFETSA 148
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK---FQVWDLGGQ 71
+ + +++ GL ++GKT++ L G V T+ + + +Y K F + D G
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSA-AYKYMLHKGFSFTLIDFPGH 59
Query: 72 TSIRPYW---RCYFPNTQAIIYVVDSS-DTERLVIAKDEFHAILEEEELRGAVV--LIFA 125
+R + + I++VVDS+ + + + + IL EL + LI
Sbjct: 60 VKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIAC 119
Query: 126 NKQDLPGALDDAAVTEALE 144
NKQ+ A + +ALE
Sbjct: 120 NKQESFTARPPKKIKQALE 138
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQY--NNIKFQVWDLGGQTS 73
+IL++G GK+++L R + TIG F V+TV +K +WD GQ
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL----RGAVVLIFAN 126
R Y+ Q +I V D V +D F + L E + AV ++ N
Sbjct: 62 FRTLTSSYYRGAQGVILVYD-------VTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGN 114
Query: 127 KQDLPG 132
K D
Sbjct: 115 KIDKEN 120
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-07
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVETVQYNN-----IKFQVWDLG 69
EA+++++G GKT++ +L +GE T G NV+ + I+ VWD G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQTSIRPYWRCYFPNTQAIIYVV-DSSDTERLVIAKDEFHAI---LEEEELRGAV--VLI 123
GQ + +F ++++ +V D DE + L + + G V V++
Sbjct: 60 GQEIYHATHQ-FFLTSRSLYLLVFDLRTG-------DEVSRVPYWLRQIKAFGGVSPVIL 111
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166
D D + + K I S G+G+
Sbjct: 112 VGTHID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGI 151
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-07
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNNIKF--QVWDLGGQT 72
++++V+G + GKT ++ R TIG F +E + + F Q+WD GQ
Sbjct: 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQE 60
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL-P 131
+ Y+ QAII V D +D L + L+E + ++ + K+DL
Sbjct: 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120
Query: 132 GALDDAAVTEALELHK-IKNRQWAIFKTSAIKGEGL 166
A +A++L + +K WA+ SA+ GE +
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAV---SALTGENV 153
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 7e-07
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GK+++L R G+ TIG F +T++ + +K Q+WD GQ
Sbjct: 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ + V D + ++ F + L E V+++ NK
Sbjct: 62 FRSITSSYYRGAVGALLVYD-------ITNRESFENLENWLKELREYASPNVVIMLVGNK 114
Query: 128 QDLPGALDDAAVT--EALEL---HKIKNRQWAIFKTSA 160
DL + V+ EA H + F+TSA
Sbjct: 115 SDLE---EQRQVSREEAEAFAEEHGLP-----FFETSA 144
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNNIKFQV--WDLGGQTS 73
+++ +G GK+ I+ R G VS +PTIG + V+ V N + +V +DL G
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEE--------LRGAVVL 122
++ +TQ ++ V D +D + F A+ L+E + + VV+
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTD-------RQSFEALDSWLKEMKQEGGPHGNMENIVVV 114
Query: 123 IFANKQDLPGALDDAAVTEALELHKIKNRQWA------IFKTSAIKGEGLFEGLDWLSNT 176
+ ANK DL AV+E + R WA F+TSA GEG+ E L ++
Sbjct: 115 VCANKIDLTKH---RAVSED------EGRLWAESKGFKYFETSACTGEGVNEMFQTLFSS 165
Query: 177 L 177
+
Sbjct: 166 I 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NI 61
R + LF ++L++G GK+++L R S I TIG F + TV+ N +
Sbjct: 1 RDYDHLF-----KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV 55
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI 110
K Q+WD GQ R Y+ T +I V D ++ E V K I
Sbjct: 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI 104
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-06
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE----TVQYNNIKFQVWDLGGQTSI 74
+IL++G GK+++L V PTIG + + TV +K +WD GQ
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ N Q II V D + E
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRE 99
|
Length = 211 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-06
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNNIK--FQVWDLGGQTS 73
R+L++G GKT +L R E S+ I TIG F ++T++ + IK Q+WD GQ
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTER 99
+ + Y+ Q I V D S +ER
Sbjct: 62 YQTITKQYYRRAQGIFLVYDIS-SER 86
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-06
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 85 TQAIIYVVDSSDTERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDDAAV 139
T+ +++V+D S + V +++ I E L ++ NK DL D
Sbjct: 79 TRVLLHVIDLSGEDDPV---EDYETIRNELEAYNPGLAEKPRIVVLNKIDLL---DAEER 132
Query: 140 TEALELHKIKNRQWAIFKTSAIKGEGL 166
E L+ + + +F SA+ GEGL
Sbjct: 133 FEKLKELLKELKGKKVFPISALTGEGL 159
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-06
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFN----VETVQYNNIKFQVWDLGGQTS 73
+ L++G GK+ +L++ + TIG V V ++K Q+WD GQ
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA--------VVLIFA 125
R R Y+ + V D + +++ F+A+ L A V+++
Sbjct: 62 FRSVTRSYYRGAAGALLVYD-------ITSRESFNAL--TNWLTDARTLASPDIVIILVG 112
Query: 126 NKQDLPGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEGLFE 168
NK+DL DD VT LE + +F +TSA+ GE + E
Sbjct: 113 NKKDLE---DDREVTF-LEASRFAQENGLLFLETSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-06
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
++++LG N GKT++L+R T+ T+G Q+ +WD G+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILE--EEELRGAVVLIFANKQDL--PGAL 134
Y A+I D S+ + L +D F + + E+ AVV NK DL GAL
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVV---GNKLDLTEEGAL 118
Query: 135 D----DAAVTEALELHK 147
DA + E +
Sbjct: 119 AGQEKDAGDRVSPEDQR 135
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-06
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD--------- 96
+ T G N+KF+++D+GGQ S R W F + AII+VV S+
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 97 -TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R+ + F +I +++F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIILFLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + +K Q+WD GQ
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTE 98
R Y+ II V D +D E
Sbjct: 64 FRTITSSYYRGAHGIIIVYDVTDQE 88
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-06
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 5 KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ II V D +D + F I ++E ++ NK
Sbjct: 65 FRTITTSYYRGAMGIILVYDITD-------EKSFENIKNWMRNIDEHASEDVERMLVGNK 117
Query: 128 QDLPGALDDAAVT--EALEL---HKIKNRQWAIFKTSA 160
D+ + V+ E L + IK +TSA
Sbjct: 118 CDME---EKRVVSKEEGEALAREYGIK-----FLETSA 147
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 9e-06
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVET--VQYNNIKFQVWDLGGQTS 73
+I+++G N GKT ++ R + G TIG F ++T +Q +K Q+WD GQ
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRGA---VVLIFANK 127
R + Y+ + I D + + F ++ +EE E GA V+L+ NK
Sbjct: 65 FRTITQSYYRSANGAIIAYD-------ITRRSSFESVPHWIEEVEKYGASNVVLLLIGNK 117
Query: 128 QDL 130
DL
Sbjct: 118 CDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD--------- 96
+PT G + F+++D+GGQ S R W F N AII+ V S+
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 97 -TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
T R+ + + F +I +++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFN----VETVQYNNIKFQVWDLGGQT 72
+++++G GKT +L R + G + S I T+G V TV +K Q+WD GQ
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 73 SIRPYWRCYFPNTQAIIYVVD-----SSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
R Y+ + A++ + D S D R + E + + V+++ NK
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLT--EILEYAQSD----VVIMLLGNK 115
Query: 128 QDLPG 132
D+ G
Sbjct: 116 ADMSG 120
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
++L++G + GKT+ L+R VST+ I F V+TV N+ IK Q+WD GQ
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ I + D ++ E +D I + A V++ NK D+
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVILVGNKCDM 118
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-05
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+++ LG + GKT+I+ R M + TIG F +T+ ++ ++ Q+WD GQ
Sbjct: 1 HKLVFLGDQSVGKTSIITRF-MYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQ 59
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF--ANKQD 129
R Y ++ + V D ++ + + +E RG V+I NK D
Sbjct: 60 ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE---RGNDVIIVLVGNKTD 116
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIF-KTSAIKGEG---LFE 168
L D E K A+F +TSA G LF+
Sbjct: 117 ----LSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFK 155
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 5e-05
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIG--FNVETVQYNN--IKFQVWDLG 69
+I+++G GKT ++ R G P TIG F ++TV+ IK Q+WD
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64
Query: 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129
GQ R + Y+ + A+I D + E + I E+ + ++ NK D
Sbjct: 65 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYANNKVITILVGNKID 123
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG---EGLFEGL 170
L + V++ + +TSA + E LF L
Sbjct: 124 LA---ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 7e-05
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQYNNIKFQVWDLGGQTS 73
+++V+G +GK+++L +L GE T+ + V + +WD GG+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF-ANKQ 128
++ + AI+ V D +D E L + +L G + +I NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-04
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 85 TQAIIYVVDSSDTERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDDAAV 139
T+ I++V+D S +E +D + I +E L ++ ANK DLP A + +
Sbjct: 237 TRVIVHVIDMSGSEGRDPIED-YEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENL 293
Query: 140 TEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
E E K +F SA+ G+GL E L ++ L+
Sbjct: 294 EEFKEKLGPK-----VFPISALTGQGLDELLYAVAELLEET 329
|
Length = 424 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 85 TQAIIYVVDSSDTERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDDAAV 139
T+ +++++D S + +D + I E EL ++ NK DL + +
Sbjct: 236 TRVLLHLIDISPEDGSDPIED-YEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELEEL 294
Query: 140 TEALELHKIKNRQWAIFKTSAIKGEGL 166
+ L+ + +F SA+ GEGL
Sbjct: 295 LKELK----EALGKPVFPISALTGEGL 317
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFN-----VETVQYNNIKFQVWDLGGQ 71
R++V+G GK+++L R G VS PT+G + +E IK Q+WD GQ
Sbjct: 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTE 98
R R Y+ N+ ++ V D ++ E
Sbjct: 63 ERFRSITRSYYRNSVGVLLVFDITNRE 89
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 19 RILVLGLDNAGKTTILYRL-QMGEVVSTIPTIGFN-----VETVQYNNIKFQVWDLGGQT 72
+I+VLG +GKT+++ R Q G S TIG + + N+ QVWD+GGQ
Sbjct: 2 KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQ 61
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAIL---EEEELRGAVVLIFANKQD 129
Y QA+ V D ++++ +D + EE E + +VL+ NK D
Sbjct: 62 IGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLV-GNKTD 120
Query: 130 LP 131
L
Sbjct: 121 LE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 36/179 (20%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN------------IKF 63
++L LG GKTT LYR + I T+G F + V YN+ +
Sbjct: 6 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD-----EFHAILEEEELRG 118
Q+WD GQ R +F + + + D + + + ++ + HA E +
Sbjct: 66 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD--- 122
Query: 119 AVVLIFANKQDLPGALDDAAVTE--ALELHKIKNRQWAI--FKTSAIKGEGLFEGLDWL 173
+VLI NK DLP D V+E A EL ++ I F+TSA G+ + + ++ L
Sbjct: 123 -IVLI-GNKADLP---DQREVSERQAREL----ADKYGIPYFETSAATGQNVEKAVETL 172
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.001
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMG----EVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQT 72
++++LG GKT+++ R + ST F +TV I +WD GQ
Sbjct: 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA-SFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-----VLIFANK 127
Y+ + I V D +D + K +EL+ ++I NK
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVK------KWIKELKQMRGNNISLVIVGNK 114
Query: 128 QDLPGALDDAAVT--EALELHKIKNRQWAIFKTSAIKGEG---LFEGL 170
DL V+ EA E K + F+TSA G+G LF L
Sbjct: 115 IDLE---RQRVVSKSEAEEYAKSVGAK--HFETSAKTGKGIEELFLSL 157
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.002
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 19 RILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTS 73
++L+ G +GK++I + + + TI + + N +WD GQ
Sbjct: 1 KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60
Query: 74 IRPYWRCY---FPNTQAIIYVVDSSD 96
+ F A+IYV+D D
Sbjct: 61 FFEPTKDKEHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYN----NIKFQVWDLGGQ 71
+++V+G N GK++++ R G TIG F + + +++ +WD GQ
Sbjct: 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
+ Y+ QA I V ++D E + + E E +++ K DL
Sbjct: 62 EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKV--EAECGDIPMVLVQTKIDL- 118
Query: 132 GALDDAAVTEALELHKIKNR-QWAIFKTSA 160
LD A +T E + R Q +F+TS
Sbjct: 119 --LDQAVITNE-EAEALAKRLQLPLFRTSV 145
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+I+++G GK+ +L R E + + TIG F T+Q + IK Q+WD GQ
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 29 GKTTILYRLQMGEVV-STIPTIGFNVETVQYNN----IKFQVWDLGGQ 71
GKTT + R GE + T+G V + ++ I+F VWD GQ
Sbjct: 12 GKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ 59
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.003
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 21 LVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--FNVETVQYNN--IKFQVWDLGGQTSIR 75
+++G GK+ +L++ + ++ P TIG F ++ N IK Q+WD GQ R
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65
Query: 76 PYWRCYFPNTQAIIYVVD 93
R Y+ + V D
Sbjct: 66 AVTRSYYRGAAGALMVYD 83
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.98 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.98 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.98 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.98 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.98 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.98 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.98 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.98 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.98 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.97 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.96 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.96 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.96 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.95 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.94 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.94 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.94 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.94 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.94 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.94 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.94 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.93 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.93 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.93 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.93 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.93 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.92 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.92 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.92 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.92 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.92 | |
| PTZ00099 | 176 | rab6; Provisional | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.92 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.92 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.92 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.92 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.91 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.91 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.91 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.91 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.91 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.9 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.9 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.9 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.9 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.89 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.88 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.88 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.88 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.88 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.88 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.88 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.88 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.88 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.88 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.88 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.87 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.87 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.87 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.87 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.87 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.86 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.86 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.86 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.86 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.86 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.86 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.85 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.84 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.84 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.84 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.83 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.83 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.83 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.82 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.82 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.82 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.82 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.82 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.82 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.81 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.81 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.81 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.81 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.81 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.81 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.81 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.8 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.8 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.8 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.8 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.8 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.79 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.79 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.79 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.79 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.78 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.78 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.78 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.77 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.77 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.76 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.76 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.76 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.76 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.76 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.76 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.75 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.74 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.74 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.73 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.72 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.71 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.71 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.71 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.7 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.69 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.69 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.68 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.67 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.67 | |
| PRK13768 | 253 | GTPase; Provisional | 99.67 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.66 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.65 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.64 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.64 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.64 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.63 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.62 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.62 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.61 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.6 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.6 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.59 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.59 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.58 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.56 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.56 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.55 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.53 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.53 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.53 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.51 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.5 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.49 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.49 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.48 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.47 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.46 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.45 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.45 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.44 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.44 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.41 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.41 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.41 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.41 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.4 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.39 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.38 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.36 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.36 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.35 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.34 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.33 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 99.27 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.24 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.24 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.23 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.23 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.22 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.22 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.18 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.17 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.17 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.16 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.14 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.14 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.12 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.1 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.06 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.05 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.04 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.03 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.02 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.01 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.0 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.99 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.97 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.97 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.97 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.96 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.96 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.95 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.94 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.94 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.93 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.92 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.91 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.9 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.89 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.89 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.88 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.88 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.87 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.86 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.83 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.83 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.82 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.82 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.82 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.82 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.77 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.77 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.76 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.75 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.72 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.72 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.69 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.69 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.69 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.65 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.62 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.58 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.57 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.57 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.56 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.55 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.55 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.55 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.54 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.54 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.54 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.53 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.51 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.51 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.5 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.49 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.47 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.42 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.42 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.36 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.32 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.31 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.3 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.27 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.25 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.24 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.24 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.15 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.13 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.12 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.12 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.1 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.08 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.03 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 98.03 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.02 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.01 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.98 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.98 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.97 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.95 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.95 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.89 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.89 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.83 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.82 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.82 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.81 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.81 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.81 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.8 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.8 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.79 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.79 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.79 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.78 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.78 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.76 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.76 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.76 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.74 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.72 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.71 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.71 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.7 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.7 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.68 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.68 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.67 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.67 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.67 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.66 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.65 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.64 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.63 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.61 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.59 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.57 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.56 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.56 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.55 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.55 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.55 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.54 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.54 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.52 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.52 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.52 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.52 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 97.52 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.51 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.51 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.49 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.49 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.48 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.48 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.47 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.47 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 97.47 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.46 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 97.46 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.46 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.46 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.45 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.45 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.44 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.43 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.43 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.43 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.43 | |
| PLN02674 | 244 | adenylate kinase | 97.42 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.41 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.41 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.4 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.4 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.39 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 97.39 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.38 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.38 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.38 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.38 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.37 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.37 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.36 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 97.35 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.35 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=214.19 Aligned_cols=180 Identities=62% Similarity=1.097 Sum_probs=155.7
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++.++.+.+..+.++|+++|++|||||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++.+..+|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78778777777777888999999999999999999999888877889999888888888999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++++|++|+|+|+++++++.....++..++......+.|+++++||+|+......+++.+.+.........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999998888888766544467999999999999877666777766654443444566889999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|+|++++|++|.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988765
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=212.67 Aligned_cols=180 Identities=57% Similarity=1.022 Sum_probs=155.7
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||.++.+++++.+..+.++|+++|++|+|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88889999999988889999999999999999999998888777888888877778888999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++|+|+|++++++++....++..++......+.|+++|+||.|+.+....+++...++........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999998888887765433457899999999999766566667666665444455667889999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++|++|.+.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877654
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=203.41 Aligned_cols=170 Identities=64% Similarity=1.100 Sum_probs=144.5
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++..++.+.++|+++|++|+|||||++++..+.+..+.||.+.....+.+....+.+|||||++.+..++..+++++|++
T Consensus 5 ~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 34445577899999999999999999999877777788898887777778889999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.+.........+.++++||++|+|+++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999999999998887654445789999999999976655667766665554455566788999999999999
Q ss_pred HHHHHHHHHh
Q 030149 169 GLDWLSNTLK 178 (182)
Q Consensus 169 l~~~l~~~~~ 178 (182)
+|++|.+.+.
T Consensus 165 ~~~~l~~~~~ 174 (175)
T smart00177 165 GLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHhc
Confidence 9999987753
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=202.22 Aligned_cols=164 Identities=57% Similarity=1.056 Sum_probs=140.1
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++..+.++|+++|++|+|||||++++..+.+..+.||.+.....+...+..+.+|||||++.+..++..+++++|++|+|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 45567899999999999999999999888877788888887777777889999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++++.++.....++...+......+.|+++|+||+|+.+....+++.+...........++++++||++|+|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999988888887654445789999999999976556666666655444444556799999999999999999
Q ss_pred HHHH
Q 030149 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=197.83 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=136.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+++|++|+|||+|+.+|..+.+.. +..|+|+.... +.+ ...++++|||+|+++|+.+...|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 577999999999999999999999999988 88899965543 444 5678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE-EEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA-IFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~gi~~ 168 (182)
+|+|+++.+||..+..|+.++-++. ..++|.++|+||+|+.+. ..+....++.++...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 9999999999999999999996654 467899999999999743 222222333344455666 99999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
.|..+...+.+.
T Consensus 163 ~F~~la~~lk~~ 174 (205)
T KOG0084|consen 163 AFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=195.51 Aligned_cols=173 Identities=51% Similarity=0.927 Sum_probs=158.3
Q ss_pred hHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC
Q 030149 5 FTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|.+++++... .+..+|+++|..||||||+++++..+......||.+.+...+.+.+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4567777765 899999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-CCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-NRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 162 (182)
++|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+....+++...+...... ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999888777899999999999999888888888888766554 6788899999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=194.46 Aligned_cols=165 Identities=21% Similarity=0.323 Sum_probs=145.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+..||+++|+.++||||||+++..+.+.. |.+|+|.......+ ..+++++|||+|+++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34567999999999999999999999999987 88899976655443 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+|+++..||+...+|+.++.......++.+++|+||.||.++ +++..+.+...++..+..|.++||+.|+||.
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 9999999999999999999999988877667899999999999854 6666666666677777789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|..|...++..
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999998888764
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=194.70 Aligned_cols=158 Identities=63% Similarity=1.102 Sum_probs=134.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|||||||++++..+.+..+.||.+.....+.+....+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788888887777778889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.+++....++..+.......+.|+++++||+|+......+++.+.+.........+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999988888776544457899999999999765455565555544444455677899999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=194.91 Aligned_cols=162 Identities=25% Similarity=0.367 Sum_probs=137.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE--cC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|+.++|||||+.++..++|.. ..||+|..+.+... .+ ++|.||||+|++++..+.+.|++++++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 467999999999999999999999999999 58899966555443 44 88999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|||+++.+||..++.|+..+.+... ++.-+.+||||+||.+. .++........+...++.|+++||++|.|++++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999976655 78888999999999762 222222223334557788999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|..|.+.+...
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999998765
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=195.74 Aligned_cols=171 Identities=51% Similarity=0.924 Sum_probs=145.7
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+.++++..+..+..+|+++|++|+|||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++.+...+..+++.
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 45677766666789999999999999999999998888778888888888888889999999999999999999999999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|++++|+|+++++++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|+
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999988888888887765444579999999999997655566666666544444556789999999999
Q ss_pred ChHHHHHHHHH
Q 030149 165 GLFEGLDWLSN 175 (182)
Q Consensus 165 gi~~l~~~l~~ 175 (182)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=194.23 Aligned_cols=163 Identities=53% Similarity=0.944 Sum_probs=139.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+|||||++.+..++..+++.+|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 44677999999999999999999999887767888888777777888899999999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999988888888766544568999999999999766555666665554433456778999999999999999999
Q ss_pred HHH
Q 030149 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
+.+
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=191.01 Aligned_cols=161 Identities=54% Similarity=0.950 Sum_probs=136.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|||||||++++.+..+..+.||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999888777888988777778888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+++....|+..+.......+.|+++|+||+|+.+....++..+....... ....+.++++||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999998876554456899999999999765555655554432211 12345789999999999999999999876
Q ss_pred hh
Q 030149 178 KS 179 (182)
Q Consensus 178 ~~ 179 (182)
..
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=194.06 Aligned_cols=172 Identities=40% Similarity=0.634 Sum_probs=147.4
Q ss_pred chHHHhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc
Q 030149 4 MFTRLFSSLFG--NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 4 ~~~~~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
||.++++ .+. ++.++|+++|.+|+|||||++++.++.+..+.||.+.+...+..++..+.+||+||+..+...+..+
T Consensus 3 ~~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 3 WFYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred HHHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 6788888 553 8889999999999999999999998887777788888777888889999999999999989999999
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-------CCccE
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-------NRQWA 154 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~ 154 (182)
++++|++++|+|+++++++.....++..++......+.|+++|+||+|+......+++.+.++..... .+.+.
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 99999999999999999998888888887765444679999999999998766778887777644321 24566
Q ss_pred EEEecccCCCChHHHHHHHHHH
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
+++|||++|+|+++++++|...
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 9999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=186.07 Aligned_cols=180 Identities=63% Similarity=1.109 Sum_probs=172.5
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++.++..+..+|+++|--++||||++.++--+++....||+|.+.+.+.+++.++.+||..|++.++.+|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 88999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|+++.+++|||+|.++.+++.+.+..+..++......+.|++++.||.|++......++.+.+.........+-+-.|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999988877789999999999999999999999999999888889999999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
.+|+|+.|.++++.+.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999998764
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=193.81 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=129.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+++|+.|+|||||+.++..+.+.. +.++.+... ..+.+++ ..+.+|||+|++.+..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887765 556665443 3344444 78899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+... ...++... + ++..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-Y----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-H----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 57999999999999642 22222222 2 23346789999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 030149 168 EGLDWLSNTLKSIG 181 (182)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (182)
++|+++.+.+....
T Consensus 157 ~~F~~l~~~i~~~~ 170 (189)
T cd04121 157 ESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=192.10 Aligned_cols=176 Identities=41% Similarity=0.664 Sum_probs=146.7
Q ss_pred ccchHHHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 2 GIMFTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
.-++.++++.. ...+..+|+++|++|||||||++++.+..+..+.||.+.....+.+++..+.+||+||+..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~ 82 (190)
T cd00879 3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKD 82 (190)
T ss_pred HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 34566666654 23678999999999999999999999888877888888888888888999999999999988888888
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-----------c
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-----------K 149 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~ 149 (182)
+++.+|++++|+|+++.+++.....++..+.......+.|+++++||+|+......+++.+.+..... .
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 99999999999999999899888888888876655567999999999999776667777766654322 1
Q ss_pred CCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
...+.+++|||++|+|++++|++|.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 2346799999999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=193.96 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|+++|+.|+|||||++++..+.+.. +.+|.+... ..+.+++ ..+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 469999999999999999999998876 667776443 3455544 78899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++++|+.+..|+..+. .....+.|+++|+||+|+...... .+..+.+.. +..++.|+++||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999998887654 334467999999999999642211 111111211 11346799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=186.22 Aligned_cols=157 Identities=76% Similarity=1.278 Sum_probs=131.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++++|||||++++..+.+..+.||.+.+...+.+.+..+.+|||||++.+..++..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777788888777777788899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++...++.....+.|+++++||+|+.+.....++...+........+.+++++||++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777766655443457999999999999765455666555544334445568999999999999999999864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=186.04 Aligned_cols=167 Identities=17% Similarity=0.260 Sum_probs=137.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..-++|+++|++|+|||||++++...+|.. +..|+|....+ +..+ -..+++|||+|+++|..+...+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3556999999999999999999999999987 77888855444 3333 46789999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccC---CCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELR---GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++|+|++++++|+.+..|..+++.+.... .-|+|++|||+|+.+......-.+..+.......++||||+||+...|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999999999999875533 469999999999965322222223333344455688999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
|.+.|+.+...+.+.
T Consensus 166 V~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 166 VDEAFEEIARRALAN 180 (210)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877653
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=194.60 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++..+.+..+.||.+.......+....+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----------------HHHHHHHhccccccC-----------
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----------------DAAVTEALELHKIKN----------- 150 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----------------~~~~~~~~~~~~~~~----------- 150 (182)
++|+.+..|+..+... ...+.|+++|+||+|+.+... ...+........++.
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999999887654 335789999999999964100 111111111111111
Q ss_pred ---CccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 151 ---RQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 151 ---~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...+|++|||++|+||+++|..+.+.+..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 12679999999999999999999987754
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=190.42 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|.+|+|||||++++..+.+.. +.||.+.... .+..+ ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999988865 6777764332 34443 467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.+|.....|+..+.......+.|+++|+||+|+.+.... .........+..++++++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v---~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQV---TTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCcc---CHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 99999999999887776655444467999999999998643211 111111122334678999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+...+.+.
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99877653
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=187.18 Aligned_cols=165 Identities=46% Similarity=0.771 Sum_probs=133.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|||||||++++..+.+....||.+........ .+..+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988887777777755554443 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-ccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-IKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|+++++++.....++..+.......+.|+++|+||+|+......+++........ .....++++++||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 999999988888888887777655556799999999999975544455544333211 1223467999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
+++|.+.+.+.
T Consensus 162 ~~~l~~~l~~~ 172 (183)
T cd04152 162 LEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999888654
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=185.04 Aligned_cols=157 Identities=46% Similarity=0.814 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--cccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+|+++|++|||||||++++.+... ..+.||.+.....+...+..+.+|||||++.+..++..+++.+|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 347888887777777788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 97 TERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+.++.....++..+.... ...+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 999888888877776542 225799999999999976545555555544332233456799999999999999999986
Q ss_pred H
Q 030149 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=189.10 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+.++..+.+.. +.||.+.... .+.. ...++.+|||+|++++..++..+++++|++|+|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999875 7888874332 2333 45789999999999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-------HHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 94 SSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD-------DAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+... ...+............+. +|++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57887775443 4799999999999964311 001111111222233344 69999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
||+++|+.+.+.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=186.72 Aligned_cols=162 Identities=23% Similarity=0.340 Sum_probs=139.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+-++|+++|++|||||+++.++..+.+.. +..|+|+... ++.. ....+++|||+|++.++.+...|++.+++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 567999999999999999999999999877 7778885544 4444 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++..||+++..|+..+-++ ...++|.++||||+|+.. .+.+..+.++..+...+.+|+|+||++|.||++.
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 999999999999999988877555 446899999999999975 3555556666666777999999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|-.|.+.+.++
T Consensus 166 F~~La~~i~~k 176 (207)
T KOG0078|consen 166 FLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=183.04 Aligned_cols=157 Identities=64% Similarity=1.077 Sum_probs=138.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|||||||++++.+.....+.+|.+.+...+.+.+..+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999888877655568999999999999876666677666655444456778999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=189.95 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=126.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++..+||+++|++|+|||||+.++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3567899999999999999999999998866 7788774432 2333 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCc-cEEEEe
Q 030149 90 YVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
+|+|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..+ .+|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 57777765442 5789999999999854210 00111222223334445 479999
Q ss_pred cccCCCC-hHHHHHHHHHHHh
Q 030149 159 SAIKGEG-LFEGLDWLSNTLK 178 (182)
Q Consensus 159 S~~~~~g-i~~l~~~l~~~~~ 178 (182)
||++|+| |+++|..+.....
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=191.52 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=124.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|+.|+|||||+.++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999998855 7888874432 2223 447899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHH--------HhccccccCCc-cEEEEecc
Q 030149 92 VDSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTE--------ALELHKIKNRQ-WAIFKTSA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~S~ 160 (182)
+|++++++|+.+.. |...+... ..+.|+++|+||+|+.+.... +.+.+ ......+...+ ++++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 55555433 247999999999999643211 11111 01111122233 57999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+|++++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=181.96 Aligned_cols=162 Identities=21% Similarity=0.285 Sum_probs=139.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++++|+.|+|||+|+.++..+.|.+ ...|+|+... +++....++++|||+|++.|+.....|++.+.+.|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 467899999999999999999999999988 5557775443 34446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.++|..+..|+.++.++ ...+..+++++||+||... +++.++..+.+++..++.++++||++++|++|.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 999999999999999999998655 4578999999999999643 355555556666778889999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|......+..+
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=181.57 Aligned_cols=157 Identities=46% Similarity=0.872 Sum_probs=130.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|+++|++|+|||||++++.++.+....||.+.....+.. ....+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887778888876666655 457899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.++.....++..++......+.|+++|+||+|+......+++...+.. ......+++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 988988888888876544468999999999999765455666655432 222334567999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=188.97 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=128.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+..+||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 557899999999999999999999888764 6677764432 2233 44678899999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++....|+..+.+.....+.|+++|+||+|+.+.. ...+... .. +..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~~----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-LA----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888766555688999999999986432 2112111 11 22346799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|+++.+.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (189)
T PTZ00369 158 AFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=184.90 Aligned_cols=157 Identities=19% Similarity=0.287 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+.+.. +.+|.+.... .+..+ ...+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999988766 5556664433 33443 46789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++.+..|+..+... ..++.|+++|+||+|+.+... .++..+.. ...+++++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 335789999999999965422 22222221 234568999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+...+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=185.83 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++..+.+.. +.||.+.... .+..++ ..+.+|||+|++.+..++..+++++|++|+|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 689999999999999999999988854 8888875443 444444 678999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-H--------HHHhccccccCC-ccEEEEecccC
Q 030149 94 SSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDAA-V--------TEALELHKIKNR-QWAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~~~-~~~~~~~S~~~ 162 (182)
++++++|+.+.. |+..+... . ++.|+++|+||+|+.+.....+ . .....+...+.. .+.|+++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 55555332 2 4789999999999864311100 0 000111112222 36799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
|.|++++|+.+..+.
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=182.63 Aligned_cols=157 Identities=36% Similarity=0.600 Sum_probs=133.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++|||||||++++.+.....+.||.+.....+...+..+.+||+||++.+..++..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999774445888999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc---CCccEEEEecccCC------CChHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK---NRQWAIFKTSAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gi~~l 169 (182)
++.....++..+.......+.|+++|+||+|+.......++.+.+...... ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999888765444679999999999998776666666665433321 23467999999998 899999
Q ss_pred HHHHHH
Q 030149 170 LDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=172.11 Aligned_cols=167 Identities=46% Similarity=0.861 Sum_probs=154.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|..||||||+++++.+.......||.++...++.++++.+++||.+|+..++..|..|+..+|++|+|+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 46689999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
.+++.++++....+...+........|++++.||.|+......+++..++..... +..+++++.||+.+|+++.+-++|
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999999988887777778999999999999988888999888876555 778999999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
|.+.+.++
T Consensus 173 L~~~l~~r 180 (185)
T KOG0073|consen 173 LCDDLMSR 180 (185)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=184.03 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|||||||++++..+.+.. +.||.+.... .+... ...+++|||||++.+..++..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998875 7788875543 33333 4679999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.....|+..+.+.......|+++|+||+|+.+........+.. .......+.+++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA-IKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH-HHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999988888665444467899999999986442211111111 11112234579999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.++
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9988765
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=167.54 Aligned_cols=179 Identities=55% Similarity=1.029 Sum_probs=170.9
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||-++..+++..+..+.++|+.+|-.++||||++..+.-++.....||.|++.+++.++...|+.||.+|++..+.+|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|+....++|+|+|..+.+..++.+..+..++......+.|+++..||.|++....+.++.+.++....+...|-+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999888889999999999999999999999999998888999999999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|.|+.|-+.+|...+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999877653
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=186.85 Aligned_cols=159 Identities=22% Similarity=0.404 Sum_probs=127.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc------------CeEEEEEEcCCCCCCcchhhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN------------NIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~~ 80 (182)
+.+||+++|++|+|||||++++..+.+.. +.+|.+.... .+.+. ...+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999988866 6777764433 23322 378999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++++|+|+++++++..+..|+..+......++.|+++|+||+|+.+. ...++. ..+. ...+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 99999999999999999999999999888766544457899999999999643 222222 2222 2234679999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++|+.|.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=181.11 Aligned_cols=155 Identities=37% Similarity=0.638 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
.|+++|++|+|||||++++.+..+.. +.||.+.....+...+..+.+||+||++.+..++..+++.+|++++|+|.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37999999999999999999887655 78888877777777889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCCccEEEEecccC------CCChHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNRQWAIFKTSAIK------GEGLFEGL 170 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~S~~~------~~gi~~l~ 170 (182)
.++.....|+..+.... ++.|+++|+||+|+.......++...+.. ......++.++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99998888888776432 58999999999999766555555544432 23345678899999988 99999999
Q ss_pred HHHHH
Q 030149 171 DWLSN 175 (182)
Q Consensus 171 ~~l~~ 175 (182)
+.+..
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98763
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=183.83 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++..+.+.. +.||.+ .....+..++ ..+.+|||||++.+..++..+++++|++++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999888765 556655 2233344443 567899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++++....|+..+.......+.|+++|+||+|+.+.... .+....+. +..+.+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888876655568999999999998643211 11111221 122367999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=184.91 Aligned_cols=159 Identities=23% Similarity=0.330 Sum_probs=126.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.||.+... ..+.+. ...+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988766 677877443 334443 56789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
+|++++++|+.+..|+..+.... ...+.|+++|+||+|+.+ ....++..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999988887765432 235789999999999963 33334433332211 1256999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=180.03 Aligned_cols=155 Identities=20% Similarity=0.332 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999877655 77788766555443 4578999999999998888888999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++..+..|+..+..... +.|+++|+||+|+.+.....+.. . ..+...++++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888766543 89999999999997432222211 1 11234677999999999999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988865
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=183.40 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|+.|+|||||++++..+.+.. +.||.+.... .+..++ ..+.+|||+|++.+..++..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988876 8889886553 444444 67899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|++++++++.+..|+..+.... ....| ++|+||+|+..... .+.+.+ ..+......+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999988876542 23466 68899999963211 111211 111222334478999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=186.01 Aligned_cols=159 Identities=22% Similarity=0.231 Sum_probs=122.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4789999999999999999999988865 7777764332 2333 4577899999999999999999999999999999
Q ss_pred eCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCcc-EEEEeccc
Q 030149 93 DSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQW-AIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 161 (182)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777665542 4789999999999964210 001111122223334454 79999999
Q ss_pred CCCC-hHHHHHHHHHHH
Q 030149 162 KGEG-LFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~g-i~~l~~~l~~~~ 177 (182)
+|+| |+++|..+.+..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998854
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=183.74 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=125.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|.+|+|||||++++..+.+.. +.||.+... ..+... ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999887765 566666332 234443 467789999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|.+++.+++....|+..+.......+.|+++|+||+|+...... .+....+. +..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH----HHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999998877655578999999999999643211 11112221 22346799999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
++.+.+.
T Consensus 157 ~l~~~l~ 163 (164)
T cd04175 157 DLVRQIN 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=187.93 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=129.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++..+.+.. +.||.+.......+ ....+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 677999999999999999999998888766 78888866555443 3479999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.... ..++. . + ....+++|+++||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T-F----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-H-H----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999988886542 579999999999985322 22222 1 1 123457799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988764
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=190.89 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=126.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
-..++|+++|+.|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++++|++|+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 467899999999999999999999988876 7788764432 2333 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCcc-EEEEec
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQW-AIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (182)
|||++++++|+.. ..|+..+.... ++.|+++|+||+|+.+... ...+.....+..+...++ .|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777765432 4789999999999853210 011222222233344555 699999
Q ss_pred ccCCC-ChHHHHHHHHHHHhh
Q 030149 160 AIKGE-GLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~-gi~~l~~~l~~~~~~ 179 (182)
|++|+ |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99998 899999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=182.99 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+++|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988765 6777775433 3333 4578899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhccc----CCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 93 DSSDTERLVIAKDEFHAILEEEEL----RGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
|++++++++....|+..+...... .+.|+++|+||+|+.++ ...++.... . ...+.+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-A----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-H----HHcCCeEEEEECCCCCCH
Confidence 999999999999988888765442 57899999999999632 122222222 1 223467999999999999
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
++++++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=179.75 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. +.||.+... ..+..+ ...+.+|||||++++..++..+++.+|++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999888755 666665332 223333 356889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++.++.....|+..+.+.....+.|+++|+||+|+.+... ..+..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887765556899999999999965322 22222221 22345799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=179.83 Aligned_cols=157 Identities=42% Similarity=0.751 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------cccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV-------VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+|+++|++|+|||||++++..... ..+.+|.+.+...+.+++..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975322 2256788888888888899999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc--ccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++.....++..+.......+.|+++++||+|+.......+....+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556899999999999976655555555544322 2234568999999999999999
Q ss_pred HHHHHH
Q 030149 170 LDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=179.07 Aligned_cols=162 Identities=52% Similarity=0.903 Sum_probs=138.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|++|||||||++++.+..+..+.||.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+|
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 35689999999999999999999999887778888888888888888999999999998888888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++..++.....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|+|+++++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99988888888888777665555679999999999997665566676666544444455678999999999999999998
Q ss_pred HH
Q 030149 174 SN 175 (182)
Q Consensus 174 ~~ 175 (182)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=181.35 Aligned_cols=158 Identities=23% Similarity=0.333 Sum_probs=127.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+.++.. +.||.+... ..+...+ ..+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999988766 677777543 3344433 678999999999988889899999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877654 34678999999999997432 222222221 22346799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++.+++.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=180.66 Aligned_cols=156 Identities=22% Similarity=0.351 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++++.. +.||.+.... .+.. ....+.+|||||++.+..++..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998865 6777764432 3333 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++++++.+..|+..+... .....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888877543 335789999999999964321 22222211 2234579999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=180.79 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|||||||++++.+..+.. +.+|... ....+.. ....+.+|||||++++..++..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999888765 4555542 2223333 34678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
++++++++....|+..+.......+.|+++|+||+|+.... ..++..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887766555678999999999986432 222222221 12246799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
+|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987753
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=186.26 Aligned_cols=160 Identities=24% Similarity=0.407 Sum_probs=128.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+++|||||++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999988766 5667765433 3333 2368999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++.+..|+..+.........|+++|+||+|+.... ..++. ..+. +..+++++++||++|+|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHH
Confidence 999999999999999999988766544567899999999996532 22222 2222 2334789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|+.|.+.+.+.
T Consensus 156 e~f~~l~~~~~~~ 168 (211)
T cd04111 156 EAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=179.36 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++..+.+.. +.||.+.... .+...+ ..+.+||++|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999988866 6788875443 444444 67899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|++++++|+.+..|+..+... ...+.|+++|+||.|+.+.... .+....+. +..+.+|+++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877544 3357899999999998643221 22222222 22346799999999999999999
Q ss_pred HHHHH
Q 030149 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=180.71 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+++|+++|.+|+|||||++++..+.+.. +.+|.+ .....+..+ ...+.+|||||++.+..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 3689999999999999999999888766 555554 223344443 356889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+.......+.|+++|+||+|+...... ......+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999888877655568999999999998543211 11112221 22346799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=170.72 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=135.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++|+|+..+|||||+.++++..+.+ +..|.|+....-.. +..++++|||+|++.++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 455799999999999999999999999988 77788866443322 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.+||..+..|..++. ..++.+.|+|+|+||||+.++ +.+..+..+..+...++.||++||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 9999999999999999998885 457889999999999999643 333333334444556677999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.+...+.+.
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=177.68 Aligned_cols=153 Identities=13% Similarity=0.205 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
++|+++|+.|+|||||+.++..+.+.. +.|+.+.....+.+++ ..+.+|||+|++. ..+++.+|++++|+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888766 4444443344555555 6789999999975 2356789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++|+.+..|+..+......++.|+++|+||+|+..... +++......... ....++|++|||++|.||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999998887665556789999999999853211 112211111111 2234789999999999999999998
Q ss_pred HHH
Q 030149 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=185.11 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=123.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|.+|+|||||++++..+.+.. +.+|.+.. ...+...+ ..+.+|||||++.+..++..+++.+|++|+|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888766 56666532 22333433 5689999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++++++.+..|+..+..... ..+.|+++|+||+|+..... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999998887765432 25789999999999964322 1221 111 12234679999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
+++.+.+.+.
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=179.91 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+.. ......+ ...+.+|||||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999887655 55555522 2223333 367889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++++||+|+.... ..++.. .+ .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-EL----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-HH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999998888766555678999999999986432 112221 11 12234579999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+.+...+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=185.75 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.||.+... ..+... ...+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888766 777877553 334442 47899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+... ..+....+. ...+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~----~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA----QANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999888887766532 23568999999999964321 111122222 22346799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++...+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=185.32 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+|+|++|+|||||+.++..+.+.. +.||.+.... .+.+ ....+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3689999999999999999999988876 7888874432 3344 4577899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HH--------HHHHhccccccCCc-cEEEEecccC
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AA--------VTEALELHKIKNRQ-WAIFKTSAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (182)
|++++++|+.+..+|....... .++.|+++|+||+|+.+.... .. +........++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976555444332 357999999999999643110 00 11112222233344 4899999999
Q ss_pred CCC-hHHHHHHHHHHHhh
Q 030149 163 GEG-LFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~g-i~~l~~~l~~~~~~ 179 (182)
+++ |+++|+.+..+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 985 99999999886544
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=181.50 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|++|+|||||+.++..+.+.. +.||.+... ..+.. ....+.+|||+|++.+..++..+++++|++|+|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999888765 677765322 23333 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHH--------HhccccccCCc-cEEEEeccc
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTE--------ALELHKIKNRQ-WAIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~S~~ 161 (182)
|++++++|+.+.. |+..+... .++.|+++|+||+|+.+... .+.... .......+..+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999975 55555433 25799999999999964211 111111 00111112223 479999999
Q ss_pred CCCChHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNT 176 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~ 176 (182)
+|+|++++|+.+...
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=178.27 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999888765 566666433 334443 35789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++..+..|+..+.... ..+.|+++++||+|+..... .++.. .+. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ-EFA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH-HHH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775542 35789999999999864322 12222 221 233568999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=182.53 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=122.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+|||+|++.+..++..+++.+|++|+|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999988866 6777764432 2333 34789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHH---------HHhcccccc-CCccEEEEecccC
Q 030149 94 SSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDAAVT---------EALELHKIK-NRQWAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~S~~~ 162 (182)
++++++|+.+.. |+..+... .++.|+++|+||+|+.......+.. ......... ...++|+++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66665443 2478999999999997543222111 011111111 2236799999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|+|++++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=182.71 Aligned_cols=159 Identities=24% Similarity=0.367 Sum_probs=127.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++.+..+.. +.||.+... ..+... ...+.+||+||++.+..++..+++.+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 357899999999999999999999988765 677777443 334433 357899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+..... .++..... ...+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999998888775432 4689999999999965322 22222211 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+...
T Consensus 157 ~lf~~l~~~~~~~ 169 (199)
T cd04110 157 EMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=178.04 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++.++.+.. +.||.+..... +.. ....+.+|||||++.+..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988755 66666533322 222 45788999999999999888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
++++++++.+..|+..+..... .++.|+++|+||+|+.+... .++. . ......+++++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~----~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-A----ACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-H----HHHHHhCCcEEEeecCCCCCHHHH
Confidence 9999999999888876654322 25789999999999965221 1111 1 112233467999999999999999
Q ss_pred HHHHHHH
Q 030149 170 LDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
|++|...
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=170.89 Aligned_cols=162 Identities=21% Similarity=0.316 Sum_probs=138.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccceeEEE--EE--EcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVET--VQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||+-+|..+.+.+..| |+|+.... +. ....++-+|||+|+++|+.+.+.|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 456999999999999999999999999999776 47754433 33 36688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++.+++|..+..|+.++-.+..+++...++|+||+|... .+.+..+....+++..++-|+++||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999988787778888899999999642 2444455555666677778999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+...+.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999988754
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=172.63 Aligned_cols=156 Identities=40% Similarity=0.709 Sum_probs=131.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.+..+.. +.||.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999988766 778888877777778899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
++.....++..........+.|+++|+||+|+......++..+...........++++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888766544567899999999998766555555555543333445678999999999999999999865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=174.62 Aligned_cols=155 Identities=18% Similarity=0.286 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++..+.+.+ +.++.+.... .... ....+.+|||||++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 4455543322 2233 3567899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|++++.++.....|+..+.... .+.|+++|+||+|+.... ..+. ..+ ....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999888888775432 468999999999985321 1111 111 1223567999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887764
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=175.45 Aligned_cols=158 Identities=15% Similarity=0.307 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++..+.+.. +.++.+... ..+.. ....+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 466999999999999999999999888766 566776543 23334 3467899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+... ...++..+... .....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888887765432 246899999999998632 22333332222 12234799999999999
Q ss_pred hHHHHHHHHHH
Q 030149 166 LFEGLDWLSNT 176 (182)
Q Consensus 166 i~~l~~~l~~~ 176 (182)
+.++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=175.97 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=124.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|||||||++++.++.+.. +.||.+... ..+..++ ..+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45799999999999999999999888764 667776443 3344444 578999999999989999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999998888775543 3468999999999986432 222222222 12356799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=177.40 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCc-chhhhccCCCCeEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIR-PYWRCYFPNTQAIIY 90 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++..+.+.. +.+|.+... ..+... ...+.+||+||++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999888765 666666433 334443 4789999999998876 467888999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccC---CCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gi 166 (182)
|+|+++++++..+..|+..+.......+.|+++|+||+|+..... ..+....+. +...++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999999888887665556899999999999864322 122222222 22347799999999 8899
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=175.18 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=123.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++..+.+.. +.+|.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999887765 5556553 344455554 588999999999988888999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 99999999999998888887553 33578999999999996432 1122222111 12224699999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=178.41 Aligned_cols=158 Identities=25% Similarity=0.334 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..+ ...+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998876 777777443 334443 467899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776543 346899999999998743211 12222222 22355799999999999999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
+|.+.+.+.
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999988654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=171.89 Aligned_cols=155 Identities=20% Similarity=0.352 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..|+.+... ..+.+. ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 666666443 333343 467999999999999888888999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+.......+.|+++++||+|+.... ..++... +. ...+++++++|+++|+|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888877766666789999999999997332 3333222 22 22357799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=175.20 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=125.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. +.+|.+... ..+..+ ...+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34799999999999999999999888766 455655433 333333 4689999999999998888999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..|+..+.... .++.|+++|+||.|+.... ..++..... ...+++++++||++++|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999888776543 3679999999999996432 223322222 22356799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=174.90 Aligned_cols=154 Identities=20% Similarity=0.335 Sum_probs=121.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++++.. +.++.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888755 555655333 333333 367899999999999888999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+++++++..+..|+..+... ..++.|+++++||+|+.+.. ..++...... ..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776433 34689999999999996432 2222222221 233779999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-30 Score=180.33 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=124.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|++|+|||||++++..+.+.. +.||.+ .....+.+.+ ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888865 677775 3333444444 678899999999988888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhc--------ccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 94 SSDTERLVIAKDEFHAILEEE--------ELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....+++.+... ....++++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~----~~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG----GDENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH----hcCCCEEEEEeCCCC
Confidence 999999999998888886542 235789999999999964 233344443332 123567999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++|+.|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=167.10 Aligned_cols=159 Identities=24% Similarity=0.313 Sum_probs=132.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-++|+++|..|+|||+|++++..+-|++ ...|+|+.. .++.. .+.++++|||+|+++|+.+...|++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4799999999999999999999998887 777888543 34444 678999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++...+|+.+..|+..+-.+. ..++.-|+|+||+|+.+. .++++.....+.+....-|+++||++..|++.||.
T Consensus 87 ydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999986654 356778999999998643 44444444444445555699999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.+...+..
T Consensus 163 ~~a~rli~ 170 (213)
T KOG0095|consen 163 DLACRLIS 170 (213)
T ss_pred HHHHHHHH
Confidence 98877653
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=174.73 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=137.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+-+||+++|++++|||-|+.++..+.|.. .-+|+|+...+... ...+.+||||+|+++++.....|++.+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 567899999999999999999999999987 66788876665433 5578899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++...+|+.+..|+.++..+ ...++++++|+||+||.. .+.+..+..+..++..++.++++||+.+.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 999999999999999999998665 446899999999999963 2333334444445667788999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.++..+.+.
T Consensus 168 F~~~l~~I~~~ 178 (222)
T KOG0087|consen 168 FERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=176.53 Aligned_cols=160 Identities=20% Similarity=0.155 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcc--------hhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~--------~~~~~~~~ 84 (182)
++|+|+|.+|+|||||++++.++.+.. +.||.+... ..+.+++ ..+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988766 677765332 3344444 6788999999754321 12345789
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEeccc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+|++|+|+|++++++++....|+..+.... ...+.|+++|+||+|+..... ..+....+. .+..+++|+++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999988888877654 246799999999999964311 111111111 12235779999999
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 030149 162 KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~~ 180 (182)
+|.|++++|+.+.+.+...
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=178.25 Aligned_cols=157 Identities=24% Similarity=0.407 Sum_probs=124.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|||||||++++..+.+. .+.+|.+.... .+.++ ...+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 35666664433 23443 46889999999999988888899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++.+..|+..+... ...+.|+++|+||+|+..+. ..++.. .+. ...+.+|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777654 33478999999999996321 222222 221 223467999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|++|.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=181.17 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=129.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++.+..+.. +.+|.+... ..+..+ ...+.+||++|++.+..++..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999888764 667777554 344443 368999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+...... .+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888877544 3357999999999998643221 22223332 23467899999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|+.+...+.+.
T Consensus 165 lf~~l~~~i~~~ 176 (216)
T PLN03110 165 AFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=177.12 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++.++.+.. +.||.+.... .+... ...+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988765 6666654432 23332 467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCC------CHHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGAL------DDAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
|++++++|+.+.. |+..+... .++.|+++|+||+|+.... ...+.. .+ ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE-SV----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHH-HH----HHHcCCcEEEEccCCCCC
Confidence 9999999999875 55554332 2578999999999986432 112111 11 122233 79999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++|+.+.+.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999888654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=177.09 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++..+.+.. +.+|.+... ..+..++ ..+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 777777543 2344443 5677999999999988898899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+|++++.+++....|+..+... ..+.|+++|+||+|+.+... ...+............+.+++++||++|+|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888776543 24789999999999864321 11111000011112234679999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
+.+.+.+.+.
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999887543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=175.37 Aligned_cols=154 Identities=28% Similarity=0.424 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+||++|++.+..+....++++|++|+|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988776 77787655444 333 44679999999999998888899999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+++++++.+..|+..+..... .+.|+++++||.|+.+ ....++..+.. ...+.+|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888766544 5689999999999875 22333322222 22347899999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
.+.+.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=179.13 Aligned_cols=161 Identities=24% Similarity=0.362 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++....+..+.++.+... ..+..+ ...+.+|||||++.+..++..+++.+|++|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567999999999999999999999888877777777544 334443 4678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++++++..+..+|...... ....+.|+++|+||+|+..... .++... +. ...+++|+++||++|.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~~----~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-LA----KEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999998766554443 2334679999999999964322 122211 11 2235679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888653
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=175.74 Aligned_cols=150 Identities=21% Similarity=0.316 Sum_probs=122.6
Q ss_pred EcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|++|||||||++++..+.+.. +.||.+.......+ ....+.+|||+|++.+..++..+++++|++|+|+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999888865 78888866554433 457899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.++..+..|+..+.... .+.|+++|+||+|+.......+... .....++.|++|||++|+||+++|++|...+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888886543 4799999999999853221111111 1233567899999999999999999999887
Q ss_pred hh
Q 030149 178 KS 179 (182)
Q Consensus 178 ~~ 179 (182)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 55
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=174.37 Aligned_cols=152 Identities=21% Similarity=0.348 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999888765 6677765442 2333 35789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+..... .++..... +..+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999988887765432 4789999999999864322 22222222 22345799999999999999
Q ss_pred HHHHHHHH
Q 030149 169 GLDWLSNT 176 (182)
Q Consensus 169 l~~~l~~~ 176 (182)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=172.45 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.||+++|++|||||||++++.+.++.. +.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999888765 55655543 33444443 57899999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.+... ..+...... +..+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999988888765432 3699999999999953321 112222221 22347799999999999999999
Q ss_pred HHHHHH
Q 030149 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~~ 177 (182)
++.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=168.83 Aligned_cols=155 Identities=25% Similarity=0.399 Sum_probs=124.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+.+ ....+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998876 67777643 334444 447889999999998888888899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+++++++.....|+..+..... +..|+++++||+|+.... ..++...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988888766543 679999999999986321 2233222221 22367999999999999999
Q ss_pred HHHHHHHH
Q 030149 170 LDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~~ 177 (182)
+++|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=174.25 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++..+.+.. +.||.... ...+..+ ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888765 56665422 2234444 3567899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH---------HHHHhccccccCCc-cEEEEecccCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA---------VTEALELHKIKNRQ-WAIFKTSAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~S~~~~ 163 (182)
..++++|+.....|...+... ..+.|+++++||+|+.+...... +.........+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875444444333 46899999999999864321111 00011111112223 36999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++|+.+.+.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=172.21 Aligned_cols=156 Identities=22% Similarity=0.410 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++.+..+.. +.++.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888755 55665543 33344444 68899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++.+++.+..|+..+..... .+.|+++++||+|+.... ..+.... +. +..+++++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998887777655432 589999999999986532 2222322 22 2234679999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
+.+.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=172.53 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVE--TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+||+++|++|||||||++++..+ .+.. +.+|.+.... .+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 3443 6777765433 2333 3478999999999988888899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-HHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA-VTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+........ ..+.+. ...+.+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887765542 4689999999999964422111 111221 22346799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=173.71 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
|+|+|++|+|||||++++..+.+.. +.++...... .+..+ ...+.+|||||++.+..++..+++.+|++|+|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988765 5565543322 23333 357899999999999999999999999999999999
Q ss_pred CcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HH--------HHHHhccccccCCc-cEEEEecccCCC
Q 030149 96 DTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDD-AA--------VTEALELHKIKNRQ-WAIFKTSAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (182)
++++|+.+.. |+..+... .++.|+++|+||+|+...... +. +.........+..+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999874 66655443 257999999999999653211 00 00011111122233 379999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030149 165 GLFEGLDWLSNTLK 178 (182)
Q Consensus 165 gi~~l~~~l~~~~~ 178 (182)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=169.10 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++....+.. +.++.+... ..... ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887765 455544222 22223 45789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
++++.++.....|+..+.......+.|+++|+||+|+... ....+... .. ...+.+++++||++|+|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999998887655568999999999999752 12222222 21 12346799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.+.+++.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=176.61 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCC-----c-ccccccce-eEE------------EEEEcCeEEEEEEcCCCCCCcc
Q 030149 17 EARILVLGLDNAGKTTILY-RLQMGEV-----V-STIPTIGF-NVE------------TVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~-~~~~~~~-----~-~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.+||+++|+.|+|||||+. ++.++.+ . .+.||++. ... .++.....+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5654433 2 25677742 111 1222457899999999875 3
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCC----------------HHHH
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----------------~~~~ 139 (182)
....+++++|++|+|+|++++++|+.+.. |+..+.... ++.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668999999999999999999999974 666654332 4789999999999864210 1122
Q ss_pred HHHhccccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 140 TEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
........++..+++|++|||++|+||+++|+.+.++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222333344556789999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=161.30 Aligned_cols=173 Identities=36% Similarity=0.675 Sum_probs=159.6
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
++-++.+ ...+.+.++|-.+||||||+|.+..+.+.. ..||.|.+...+.-+...+.+||.||+..++.+|..|.+.+
T Consensus 11 wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 11 WICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 3433344 788999999999999999999999888887 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++++||+|+.+++.++..+..+..++......+.|.++.+||.|+++.-+...+...+.........+.+|.+||++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999999999999999999999999989999999999999999988999999999888888889999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++.+.+||.++-...
T Consensus 170 id~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 170 IDITLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876544
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=168.66 Aligned_cols=159 Identities=16% Similarity=0.274 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++.+..+.. +.+|.+... ..+... ...+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887655 455655433 334443 356789999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|++++++++....|...+..... ..+.|+++|+||+|+..+ ...++...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999998888777776655433 237899999999999732 22333322222 1223679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++++.+.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=172.15 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
++|+++|.+|+|||||++++.++.+.. +.+|.+.. ...+.. ....+.+|||||++.+..++..+++.++++++|+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 689999999999999999999888765 56666533 223333 34688999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+++++++....|...+.......+.|+++++||.|+.+... .++.. .+.. .....+++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLSQ---QWGNVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHHH---HcCCceEEEeeCCCCCCHHHHHH
Confidence 999999999988888776655556899999999999864322 12211 1111 11236799999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
++...+.
T Consensus 158 ~i~~~~~ 164 (168)
T cd04177 158 DLVRQII 164 (168)
T ss_pred HHHHHHh
Confidence 9987653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=169.69 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccccccc-ceeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTI-GFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~-~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||++++..+.+....++. ........+ ....+.+|||||.+.....+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886543332 211222222 567899999999988877778888999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc-cEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ-WAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.+..+|...+.... .+.|+++|+||+|+.+.................... .+++++||++|.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999988655544444333 479999999999997543321111111000001111 269999999999999999999
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=161.05 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=133.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE----EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+|++++|+.|+|||+|+.+|..+++.. ...|+|+.... +-.+.+++++|||+|+++|+.....|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 45799999999999999999999998877 66688866544 22356899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|+++.++|..+..|+.+.. ....++.-+++++||.||... .++.-..+..+...+.+.+.++|+++|+|++|.|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR-~lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDAR-TLASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHH-hhCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 999999999999999999985 445578889999999999754 3343344444556667789999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
-...+.+..
T Consensus 164 l~c~~tIl~ 172 (214)
T KOG0086|consen 164 LKCARTILN 172 (214)
T ss_pred HHHHHHHHH
Confidence 888776643
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=171.71 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEE--cCeEEEEEEcCCCCC-CcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTS-IRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (182)
+|+++|++|+|||||++++..+.+.. +.++.. .....+.. ....+.+||+||++. .......+++.+|++|+|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999877754 555553 22222333 345789999999885 34556778899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCC-CChHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKG-EGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~gi~~l 169 (182)
++++++++.+..|+..+..... ..+.|+++|+||+|+.... ..++.. .+. +..+.+|+++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE-KLA----SELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH-HHH----HHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877665432 4579999999999985331 222211 111 223467999999999 499999
Q ss_pred HHHHHHHHh
Q 030149 170 LDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~~~ 178 (182)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=164.95 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=129.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+|+|++|+|||||+.+|..+.|.. |..|+|.. ..++++ ...+++|||++|++.|+.+...+++..+++++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 467899999999999999999998887 78888844 334444 5688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.+||.+...|+.++.+.. +..|-++|+||.|..+.. -+..+.+..++...++.+|++|+++++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rr---vV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERR---VVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccce---eeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999996654 378999999999987532 12222223334556777999999999999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
|.+++..
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=170.94 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=113.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+.++..+.+.. +.||.. .....+..+ ...+.+|||||++.+...+..+++++|++|+|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999998877766 555542 111233333 4678999999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccccccCCc-cEEEEecccC
Q 030149 94 SSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELHKIKNRQ-WAIFKTSAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (182)
++++++|+... .|+..+... .++.|+++++||+|+..... .+.+.........+..+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999886 455555432 24689999999999864321 00011101111112223 3799999999
Q ss_pred CCChHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSN 175 (182)
Q Consensus 163 ~~gi~~l~~~l~~ 175 (182)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=175.84 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=118.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccc--eeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccC-CCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (182)
+||+++|++|+|||||++++..+.+. .+.++.+ .....+.+ ....+.+|||||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3556553 33344444 55789999999998 223344566 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|++++.+|+....|+..+.......+.|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999888887766544467999999999998643221 1111111 1223567999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+++.+.+..
T Consensus 155 ~~~l~~~~~~ 164 (221)
T cd04148 155 LEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHh
Confidence 9999988863
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=171.96 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=123.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||++++..+.+.. +.+|.. .....+.+.+ ..+.+||+||+..+..++..+++.+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999888766 455553 3333444544 6889999999999988888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+++.+++....|+..+.......+.|+++|+||+|+.............. ......+.+++++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALS-TVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHH-HHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 99999999998888887766556899999999999864211111111111 11112235699999999999999999999
Q ss_pred HHHh
Q 030149 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=174.69 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=125.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++....+.. +.+|.+.... .+... ...+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999887765 5667665432 34443 3578899999999988889999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++..+..|+..+.... ..+.|+++++||+|+... ...++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988887765432 357899999999999643 2222222222 22356799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+++.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=166.95 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc-c-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+||+++|++|+|||||++++.++.+. . +.||.+... ..+...+ ..+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999886 4 778877443 3444444 6789999999999988889899999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCcc-EEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQW-AIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (182)
++|+|++++++++.+..|+..+.. ..+.|+++|+||+|+.+.... ....+.+.. ..++ .++++||++|.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCR----KLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHH----HcCCCCCEEEEeccCccH
Confidence 999999999999888777765422 247899999999998643211 011111111 1122 3689999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|+.+.+.+..
T Consensus 155 ~~lf~~l~~~~~~ 167 (169)
T cd01892 155 NELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=166.89 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=117.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|||||||++++.++.+.. +.||.+... ..+.+. ...+.+|||||++.+...+..++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988765 667766432 334443 457899999999998888888899999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHH--------Hhcccccc-CCccEEEEeccc
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTE--------ALELHKIK-NRQWAIFKTSAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~S~~ 161 (182)
|++++++++.... |...+... ..+.|+++|+||+|+.+..... ++.. .......+ ....++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999988865 44444332 2478999999999986432111 1100 00001111 123479999999
Q ss_pred CCCChHHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~ 177 (182)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=166.03 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. +.++.+. ....+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887765 4444432 2233333 3457899999999988888998899999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+..... .++..+.. ...+.+++++|+++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998888777765543 3789999999999874322 22222222 2235679999999999999999
Q ss_pred HHHHHHH
Q 030149 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=167.74 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEE--EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.+..+.. +.++..... .... .....+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999988743 555443221 1222 245689999999999888888888899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH--------HHHHhccccccCCc-cEEEEecccCCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA--------VTEALELHKIKNRQ-WAIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (182)
++++.++......|...+.... .+.|+++|+||+|+.+...... +............+ .+++++||++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999998887765554443322 3799999999999975532211 01111111112223 379999999999
Q ss_pred ChHHHHHHHHH
Q 030149 165 GLFEGLDWLSN 175 (182)
Q Consensus 165 gi~~l~~~l~~ 175 (182)
|++++++.+.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=164.90 Aligned_cols=158 Identities=23% Similarity=0.331 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|+|||||++++..+.+.. +.+|.+ .....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 345899999999999999999999776654 556665 3333445544 56899999999998888888999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|+++++++.....|+..+.. ....+.|+++++||+|+...... ....+.+. +....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 99999999999888877766543 33357899999999998643221 22222222 22336799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+|+.+.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=165.23 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. +.||... ....+... +..+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887765 5555542 23334443 4567999999999998889899999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.++..+++....++..+.+.....+.|+++|+||+|+.... ...+... +. ...+.+++++||+++.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887666678999999999986422 2222221 11 12236799999999999999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
++.+.+.+.
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999988764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=161.31 Aligned_cols=151 Identities=24% Similarity=0.375 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. +.+|.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888877 46677755554433 3478899999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC--CCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP--GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|++++++++....|+..+.... ....|+++++||+|+. .....++..+... ....+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999888777776543 2579999999999995 2223333333222 245679999999999999999
Q ss_pred HHHH
Q 030149 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9885
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=161.39 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=121.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|||||||++++.+..+.. +.++.. .....+... ...+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999877655 455544 222333344 46889999999999888899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++.....++..+.........|+++++||+|+.... ..++...... ..+.+++++|++++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776554689999999999987521 2222222221 12267999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=158.38 Aligned_cols=162 Identities=23% Similarity=0.377 Sum_probs=136.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...++++++|++-+|||||+..+..+++.. ..||.|+.... +++ ..+++++|||+|++.|+.+...|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 467899999999999999999999999988 78888865432 222 457899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCC-CeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRG-AVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
++++|+++.+||+-...|+.........+. .-+.+|++|+|+.+ .+++..+.++..+...+..|+++|+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999988776655344 44689999999973 34555555556667778889999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+.|..|.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=152.87 Aligned_cols=180 Identities=64% Similarity=1.042 Sum_probs=164.5
Q ss_pred CccchHHHhhhhcCC-cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFGN-KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|+--+...+..++.. +..+++++|-.|+|||++..++.-++.....||++.+...+.+++.++++||..|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 455567778888775 8999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.|+.+.|.+|||+|.++.+........+..++.....++..++++.||.|........+....++....+..-+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888888888877778899999999999988878888888888887788889999999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|.+|+|+++..+||.+.+.+.
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=164.31 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++..+.+.. +.+|..... ..+... ...+.+||++|++.+......++..+|++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998776654 455544322 233333 356899999999888777777789999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-------HHHHHhccccccCCc-cEEEEecccCC
Q 030149 93 DSSDTERLVIAKD-EFHAILEEEELRGAVVLIFANKQDLPGALDDA-------AVTEALELHKIKNRQ-WAIFKTSAIKG 163 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~S~~~~ 163 (182)
|++++++++.+.. |+..+... . ++.|+++|+||+|+....... .+.........+..+ .++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY-C-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999875 55555433 2 469999999999985421110 000001111112223 46999999999
Q ss_pred CChHHHHHHHHHHHhhcC
Q 030149 164 EGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~~ 181 (182)
.|++++|+.+.+.+...+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998776543
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=158.42 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
.+|+++|++|+|||||++++.+..+.. ..+|.+.....+.+.+.++.+|||||..+... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999877642 12355566666666789999999999743110 011112236
Q ss_pred CeEEEEEeCCCcchH--HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 86 QAIIYVVDSSDTERL--VIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.......+. .. ......++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~----~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EE----EEELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HH----hhhhccCceEEEEeccc
Confidence 899999999887653 44445555554322 37899999999999754332221 11 12334567999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
+|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=157.28 Aligned_cols=180 Identities=39% Similarity=0.687 Sum_probs=157.9
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcC--------CCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMG--------EVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
|=..+..+|+-.+....+.|+++|..++|||||+.+.-.. +.....||.+.+..++......+.|||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 4456778888888899999999999999999999987421 12236779999999999999999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-ccccCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-HKIKNR 151 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 151 (182)
..+.+|..|+..+|++|++||+.++++++.....+..+.......+.|+++..||.|+.......++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988888889999999999999888777777777663 334456
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
..++.++||.+|+||++-..|+...+++.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 78899999999999999999999998765
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=161.87 Aligned_cols=160 Identities=22% Similarity=0.325 Sum_probs=128.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.....+||+++|++|||||||++++..+.+.. +.+|.+.......+ +...+.+|||+|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34667999999999999999999887777654 78888876655444 45889999999999998888888999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+.... ....++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888776542 47899999999998643222222111 12345679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+.|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-30 Score=159.53 Aligned_cols=161 Identities=22% Similarity=0.390 Sum_probs=132.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE-----------cCeEEEEEEcCCCCCCcchhhhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
.-++.+.+|++|+||||++.++..++|.. ...|+|+.. ..+-+ ..+-+++|||+|+++|+.+...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34677899999999999999999999877 666777443 33333 12568999999999999999999
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++++-+++++||.++.+||-+...|+.++..+..-.+.-+++++||+|+.. ...+.+......+...++|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999988776666788999999999963 34444444444456678899999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|+++..+.|.+.+.+
T Consensus 165 tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMK 182 (219)
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999988888777654
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=162.48 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=134.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-e--EEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-N--VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+..+|+++|.+|+|||+|..++..+.|.. +.||++. . ...++.....+.++||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999887 7888862 2 223333557889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+++++..||+.+..++.++.+.......|+++|+||+|+... ..+..+.+...+...+++|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977777777899999999999753 22222222333556677899999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.|...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=156.34 Aligned_cols=156 Identities=24% Similarity=0.203 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCC----Ccchhh---hccCCCCe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWR---CYFPNTQA 87 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 87 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+. .+.+|||||..+ ...+.. ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999998765421 12244444445556665 999999999632 112222 23456999
Q ss_pred EEEEEeCCCc-chHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDT-ERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++ ++++....|...+..... ..+.|+++|+||+|+.+.....+....... .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 788888777776654321 246899999999999754333332222211 11345699999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=152.29 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=129.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++++|..=+|||||+-++..++|.. -..|.. +...+++. ....+.||||+|++.|..+-+.|++++|+.+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 567999999999999999999999888865 333333 22233333 4567899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++.+||...+.|...+....+ ...-+++|+||+||.++ ..+....+...++..+..|+++||+.+.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999865543 56789999999999643 233333333444556667999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.|...+.+.
T Consensus 167 Fe~Lt~~MiE~ 177 (218)
T KOG0088|consen 167 FESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=158.16 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=111.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE-------cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+||+++|+.|+|||||++++.++.+.. +.||++.... .+.+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988876 7778874432 3333 23679999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhc------------------ccCCCeEEEEeecCCCCCC--CCHHHHHHHhcccc
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEE------------------ELRGAVVLIFANKQDLPGA--LDDAAVTEALELHK 147 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~ 147 (182)
+|+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+. ...+..... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhH
Confidence 999999999999999999998886532 2246899999999999643 111211111 1222
Q ss_pred ccCCccEEEEecccCCC
Q 030149 148 IKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~ 164 (182)
+...+.+.++.+|.++.
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 34456678888887543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=154.63 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC---cc---cccccceeEEEEEEc-CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~---~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.|+++|++|+|||||++++.+... .. ...|.+.....+.+. +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 4689999999999999999986432 11 122444444555555 7899999999998887767777889999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc--CCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK--NRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++... ......+. ..... ...|+++++||+|+................... ....+++++||++|+|+++
T Consensus 81 V~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 81 VVAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 999976311 11112222 11221 124899999999997532111112221111111 1356799999999999999
Q ss_pred HHHHHHH
Q 030149 169 GLDWLSN 175 (182)
Q Consensus 169 l~~~l~~ 175 (182)
+++.+..
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=156.94 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=109.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCCCcc--h------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRP--Y------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~--~------~~~~~ 82 (182)
+..++|+++|++|||||||++++.+..+.. ..+|.......+.+.+. .+.+|||||..+... . ....+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999876432 34455555556666554 899999999733211 0 11235
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
..+|++++|+|++++.++.....+... +......+.|+++|+||+|+.+..... . .......+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~-l~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKV-LKELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHH-HHHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcCC
Confidence 689999999999988877665444433 333333568999999999996542221 1 1223345699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=151.25 Aligned_cols=155 Identities=21% Similarity=0.129 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc---ccccceeEEEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+++|++|+|||||++++....+... ..|.......+... +..+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998776552 22333333444443 689999999999988888888889999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-----ccCCccEEEEecccCCCChH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-----IKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+++..... ....+..+ . ..+.|+++|+||+|+.+.. .+.+...+.... ......+++++|+++|+|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998754211 11122222 2 2468999999999987442 223322222111 11235679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999887654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=154.07 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------Ccc-cccc------cceeE----EEEE-----EcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IGFNV----ETVQ-----YNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~-------~~~-~~~t------~~~~~----~~~~-----~~~~~~~~~D~~g~~~~~ 75 (182)
+|+++|++++|||||++++++.. +.. +.++ .+.+. ..+. ..+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998642 111 2221 12221 1222 246778999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEE
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+..+++.+|++|+|+|+++..+......+.. ... .+.|+++|+||+|+.+.. .....+.+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 999999999999999999988766555444432 221 468999999999986432 222222222111 1122359
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|+|++++++++.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999999999999988753
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-27 Score=143.37 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=132.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++-+++|+-|+|||+|+..+...++...-| |+++... .+...+.++++|||+|+++|+.....+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 467899999999999999999999999887555 6665443 34447789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+++..++.-+..|+.+.. .+..++..+++++||.|+... +++.-+....+.+..++-++++|+++|+++++.
T Consensus 89 mvyditrrstynhlsswl~dar-~ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 9999999999999999998874 456688999999999999532 222333334455677888999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|-....++.+
T Consensus 165 fle~akkiyq 174 (215)
T KOG0097|consen 165 FLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHH
Confidence 9877776654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=163.70 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCCC-------CcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (182)
..|+++|.|+||||||++++.+.+... ...|...+...+.+ +..++.+||+||..+ +...+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 579999999999999999998755321 23466677777777 567899999999632 2223344667899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCccEEEEecccCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++++|+|+++.++++....|...+..+.. ..++|+++|+||+|+.+..... ...+.. ....+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 99999999988888888777776654421 2468999999999997543221 111111 12224679999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|+++++++|.+.+.+.
T Consensus 315 GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 315 GLDELLRALWELLEEA 330 (335)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-28 Score=149.40 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=124.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++|++++|||+|+-++-.+.+.. ..+|.|+.+.. +.+ .++++++|||+|+++|+.....|++++|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887777655 55677654332 333 568899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
.+..||++...|+.++.++. ...+.+.+++||+|+..+ .-+.....+..++..++|+.++||++|.|++..|-.|.
T Consensus 81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 99999999999999987663 356788999999999532 11122222233345578899999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.++
T Consensus 157 ~~l~k~ 162 (192)
T KOG0083|consen 157 EELKKL 162 (192)
T ss_pred HHHHHh
Confidence 988765
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=152.28 Aligned_cols=155 Identities=22% Similarity=0.196 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccc-------------------cccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-------------------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||++++.+....... .+.........+....+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999877654321 223344455566788999999999998888888
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH----HHHHhccccc-------
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA----VTEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~----~~~~~~~~~~------- 148 (182)
.+++.+|++++|+|+.++.+... ...+.... ..+.|+++++||+|+..+..... +.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987654322 22222222 25799999999999976433322 2222222111
Q ss_pred --cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 149 --KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 149 --~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.....+++++||++|.|++++++.+.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 234678999999999999999999998864
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=145.51 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=114.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++....+.. +.++.+..... +..++ ..+.+||+||+..+...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999887433 44555544433 55566 7899999999999988888888899999999
Q ss_pred EeCCCc-chHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDT-ERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|.... .++.... .+...+.... ..+.|+++++||+|+......+.....+.. ....+++++||.+|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 998776 5555555 4444443333 237899999999999764333333333332 23445999999999999999
Q ss_pred HHHHH
Q 030149 170 LDWLS 174 (182)
Q Consensus 170 ~~~l~ 174 (182)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=161.44 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=109.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCC-cchh-------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSI-RPYW-------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~-------~~~~ 82 (182)
.+..+|+++|.+|+|||||+|++.+.++....+ |.......+..++..+.+|||||..+. ..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 566799999999999999999999888754333 444444556668889999999997532 2111 1347
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+... ...+..+.+.. ......++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 79999999999754 344444444333322 24677889999998643 23333333221 12235699999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|+++++++|.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987754
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=167.98 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=113.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC----------cch-hhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||++++++..... ..+ |.......+.+++..+.+|||||.... ... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999887533 222 333444556678889999999995321 111 123
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|+++..++.... ++..+. ..+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999887766553 333332 247899999999999754322323333322222233467999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++|+.+.+.+...
T Consensus 365 k~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 365 KTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=157.72 Aligned_cols=152 Identities=20% Similarity=0.131 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc---ccc-eeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP---TIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTQ 86 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+.+.....+ |.. ........++..+.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987654333 222 22222233567899999999754321 1234578999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+... +................+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 999999998876653 222222222 46899999999999643 222211111111111226999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++++.+.+.+..
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=149.51 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=123.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEE---EcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQ---YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++|+|+..+|||+|+-.+..+.|.. +.||.- .....+. ...+.+.+|||+|++++..++...+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 457899999999999999999999888877 888765 2222233 34577899999999999999989999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHH--------hccccccC-CccEEEEec
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEA--------LELHKIKN-RQWAIFKTS 159 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~--------~~~~~~~~-~~~~~~~~S 159 (182)
+||++.+++|+.+....|..-+.+.. ++.|+|+|++|.||..+... +..... .....++. ....|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998754444444444 79999999999999843211 111100 00011111 235699999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++..|++++|+........
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999998887654
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=142.46 Aligned_cols=143 Identities=20% Similarity=0.163 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+...... .+ +.......+...+.++.+|||||..+.... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998765332 22 223434455667889999999997655332 22456789
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776655443222 257999999999999754332 1233456799999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=158.63 Aligned_cols=156 Identities=23% Similarity=0.230 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.++||||||++++...+... ..+|...+...+.+.+ ..+.+||+||..+. ...+..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 679999999999999999998765321 2345566666777766 89999999996421 222334456799
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|+++. ++++....|..++.... ...++|+++|+||+|+.+....++..+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 56777766666554432 2247899999999999755333333333321 1235799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=143.92 Aligned_cols=146 Identities=25% Similarity=0.255 Sum_probs=103.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CCCCeEEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTQAIIY 90 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~ii~ 90 (182)
++|.+|+|||||++++.+..... ..+ |.......+.+++..+.+|||||+..+.. ++..++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876332 333 44455566777778999999999876654 244445 48999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|+.+++.. ..++..+.. .++|+++|+||+|+............+. ...+.+++++|+.+|.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 9999876442 233333322 3689999999999965432222112221 1224579999999999999999
Q ss_pred HHHHHHHh
Q 030149 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~~~ 178 (182)
+.+.+.++
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988765
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=153.85 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=100.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCC-----------CCCcchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQ-----------TSIRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~~~ 82 (182)
...++|+++|.+|+|||||++++.+..+.. ..|+.+.....+.+. .+.+|||||. +.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999877543 334333333333333 7999999994 33333333333
Q ss_pred ----CCCCeEEEEEeCCCcchHHH---------HHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccc-
Q 030149 83 ----PNTQAIIYVVDSSDTERLVI---------AKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELH- 146 (182)
Q Consensus 83 ----~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~- 146 (182)
..++++++|+|......... ....+..... ..+.|+++|+||+|+.... ...++.+.+...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 34678899999764322100 0011112222 2479999999999996542 112222222210
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
.....+.+++++||++| |+++++++|.+.+.+.+
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 00111236899999999 99999999999887654
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=136.32 Aligned_cols=164 Identities=44% Similarity=0.765 Sum_probs=148.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcC-eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.+.++++++|-.++||||++..+.+.+..-..||.|++..++.+.+ ..+++||.+|+...+..|..|+.+.|.+|||+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 7889999999999999999999998888889999999999999955 999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+...|++....+..+.+.......|+.+..||.|+.-....+++...+.....+..-+-+-+||+.+++|+.+-.+++
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv 174 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWV 174 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhh
Confidence 99999999999999888888777889999999999998777778887777777777777889999999999999988888
Q ss_pred HHHHh
Q 030149 174 SNTLK 178 (182)
Q Consensus 174 ~~~~~ 178 (182)
....+
T Consensus 175 ~sn~~ 179 (185)
T KOG0074|consen 175 QSNPE 179 (185)
T ss_pred hcCCC
Confidence 76543
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=159.47 Aligned_cols=150 Identities=23% Similarity=0.208 Sum_probs=109.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC-C--------Ccchhhhcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-S--------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-~--------~~~~~~~~~ 82 (182)
..++|+++|.+|+|||||+|++.+..... ..+|.+.....+.+ ++..+.+|||||.. . +... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 44899999999999999999999876432 35577777777777 57899999999972 1 1221 2247
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.++|++++|+|++++.+.+....+. .++......+.|+++|+||+|+... +.+..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 7899999999999988766554333 3334333357899999999999643 22221111 123489999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=147.44 Aligned_cols=152 Identities=24% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--cc-cccccceeEEEEEEc-CeEEEEEEcCCCCC----Ccc---hhhhccCCCCeEEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRP---YWRCYFPNTQAIIY 90 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~~d~ii~ 90 (182)
++|++|+|||||++++.+... .. ..+|.......+.+. +..+.+|||||... ... .....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 22 233455555566667 89999999999632 112 22345778999999
Q ss_pred EEeCCCc------chHHHHHHHHHHHHhhcc------cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEe
Q 030149 91 VVDSSDT------ERLVIAKDEFHAILEEEE------LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+.++ .++.....+...+..... ..+.|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999888 466666666666544322 1479999999999997543322221 111222345569999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~ 176 (182)
|++++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=149.53 Aligned_cols=156 Identities=20% Similarity=0.118 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----Ccc------cccccceeEEEEEEc--------------CeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE----VVS------TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~----~~~------~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (182)
+||+++|++++|||||++++.... +.. ...|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 111 123444444444433 67999999999876
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH----HHHhcccc--
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV----TEALELHK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~----~~~~~~~~-- 147 (182)
+........+.+|++++|+|+.+.........+ . +... .+.|+++++||+|+......+.. .+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 544444446678999999999875433222111 1 1121 25799999999999743322222 22211111
Q ss_pred ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 148 IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
....+++++++||++|+|+++|++.|.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1124678999999999999999999988764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=164.17 Aligned_cols=160 Identities=19% Similarity=0.133 Sum_probs=113.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcch-----------hh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
.+.++|+++|.+|+|||||++++++.......+ |.......+..++..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999876433222 333334455567789999999997544322 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEEEEe
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++|+|+|+.++.+.... ..+... ...+.|+++|+||+|+. +....+++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~----~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLI----LEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHH----HHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 467899999999999887655443 222222 22478999999999997 222233444444433333356789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++++.+....
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=144.87 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC-----CCcchhhhccCCCCeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT-----SIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.+..+. +.+|.+. .+.. .+|||||.. .+..+. ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999977652 3344332 2222 789999973 122222 34789999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++.++... . +.... ..|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 9999876542 2 22221 24999999999996432 22222222211 11236999999999999999998
Q ss_pred HH
Q 030149 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=142.68 Aligned_cols=150 Identities=31% Similarity=0.397 Sum_probs=114.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-cc-cccccceeEEEEEEc----CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 22 VLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..+|. ......... ...+.+||+||.......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33 44444 444444443 788999999999888887788889999999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++.++.....++..........+.|+++++||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888887774444445555789999999999997654433321 11112234567799999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=142.75 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|++|+|||||++++.+..... ..+ +.......+..++..+.+|||||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999998876432 222 22233344556778899999999654311 11234
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEec
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
++.+|++++|+|+.++.+.... ..+... ...+.|+++++||+|+... ...+...+............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI----LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH----HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999888765432 222222 1246899999999999755 22333333443322222346799999
Q ss_pred ccCCCChHHHHHHHHHH
Q 030149 160 AIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~ 176 (182)
|++++|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=153.62 Aligned_cols=122 Identities=18% Similarity=0.327 Sum_probs=102.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---------------CeEEEEEEcCCCCC
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~ 73 (182)
..+...+||+++|+.|+|||||++++.++.+.. +.+|++... ..+.++ .+.+.||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 455778999999999999999999999988766 678887654 334432 35699999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-----------cCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-----------LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~Dl~~~ 133 (182)
+..++..+++++|++|+|+|+++.++++.+..|+..+..... ..+.|+++|+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999988876421 135899999999999643
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=161.92 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=110.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--ccc--cccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|.+|+|||||+|++.+.+.. ... .|.+.....+.+++..+.+|||||..+.... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 34589999999999999999999987643 222 2445556667778899999999998754432 23467
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+++.... +.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877664322 222 2478999999999997542211 12235699999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++++.+.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=144.84 Aligned_cols=141 Identities=26% Similarity=0.276 Sum_probs=99.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d 86 (182)
++|+++|.|++|||||+|++.+.+... ...|.......+.+.+..+.++|+||...... ....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999888432 33366677778888999999999999544322 223333 6899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|+++.+ .......++.+ .+.|+++++||+|+.+... .+.+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 999999997753 23333344433 4799999999999754322 23333333 56899999999
Q ss_pred CCChHHHHHHH
Q 030149 163 GEGLFEGLDWL 173 (182)
Q Consensus 163 ~~gi~~l~~~l 173 (182)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=148.08 Aligned_cols=164 Identities=30% Similarity=0.305 Sum_probs=122.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|+.|+|||||++++..+.+.. +.+|.+........ ....+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 44899999999999999999999999887 66676644444333 15679999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH-HHH----------hcc-ccccCCccEEEEe
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV-TEA----------LEL-HKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~-~~~----------~~~-~~~~~~~~~~~~~ 158 (182)
|+|.....++......|...+........|+++++||+|+......... ... ... .........++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999996666666655554444444457999999999999765321111 000 000 0001112338999
Q ss_pred ccc--CCCChHHHHHHHHHHHhh
Q 030149 159 SAI--KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~--~~~gi~~l~~~l~~~~~~ 179 (182)
|++ ++.++++++..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999988854
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=144.80 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=100.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCcccc-------------cccc----eeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 17 EARILVLGLDNAGKTTILYRLQM--GEVVSTI-------------PTIG----FNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~--~~~~~~~-------------~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
..+|+++|++++|||||++++.. +.+.... ++.+ .....+.++...+.+|||||++++...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999986 3333211 1222 333456668899999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhccc--cccCCc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALELH--KIKNRQ 152 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~~--~~~~~~ 152 (182)
+..+++.+|++++|+|+++.. +.....++.... ..+.|+++|+||+|+...... ++..+.+... .....+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 999999999999999997642 222233333322 246899999999999653221 1222222111 112236
Q ss_pred cEEEEecccCCCChHH
Q 030149 153 WAIFKTSAIKGEGLFE 168 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~ 168 (182)
++++++||++|.|+.+
T Consensus 157 ~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 157 FPVLYASAKNGWASLN 172 (194)
T ss_pred cCEEEeehhccccccc
Confidence 7899999999977633
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=146.34 Aligned_cols=157 Identities=22% Similarity=0.224 Sum_probs=112.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--c-------------------cccccceeEEEEE--EcCeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 72 (182)
+.++|+++|+.++|||||+++|+..... . ..-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999743211 0 1225556677777 789999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc-----cc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL-----HK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 147 (182)
++.......+..+|++|+|+|+.+.-. ......+... ...+.|+++|+||+|+... ..++..+.... ..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~----~~~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKIL----RELGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHH----HHTT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccc----cccccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 988888888999999999999986632 1222223332 2347889999999999832 22222222221 11
Q ss_pred ccC-CccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 148 IKN-RQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 148 ~~~-~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... ...+++++||.+|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 2578999999999999999999998875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=147.27 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c----cccccceeEEEEEEc---------------------------C----
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S----TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~----~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||++++.+.... . ..-+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 48999999999999999999654211 1 111221111111110 2
Q ss_pred --eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH
Q 030149 61 --IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138 (182)
Q Consensus 61 --~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 138 (182)
..+.||||||++.+...+...+..+|++++|+|+.++.........+... ... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999988888788888999999999998742111122222222 111 1357999999999975322222
Q ss_pred HHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 139 VTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..+.+..... .....+++++||++|+|++++++.+.+.+..
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222221111 1235679999999999999999999887653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=159.57 Aligned_cols=158 Identities=24% Similarity=0.276 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC----Cc---chhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS----IR---PYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~~---~~~~~~~~~~d~ 87 (182)
..|+++|.|+||||||+++|.+.+... ..+|...+...+.+.+..+.+||+||..+ .. .....+++.+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 689999999999999999998765432 34466778888888889999999999532 11 122335678999
Q ss_pred EEEEEeCCCc----chHHHHHHHHHHHHhhc----------ccCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCc
Q 030149 88 IIYVVDSSDT----ERLVIAKDEFHAILEEE----------ELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQ 152 (182)
Q Consensus 88 ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~ 152 (182)
+|+|+|+++. +.++....+...+..+. ....+|+++|+||+|+.+..... .+...+ ...+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g 314 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG 314 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence 9999999753 34444433333332221 23478999999999996432221 111111 1235
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
++++++||++++|+++++++|.+.+...
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 7899999999999999999999988764
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=160.48 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (182)
...+|+++|.+|+|||||+|++.+.......++.+ .....+.+.+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34789999999999999999999876544333333 33444556788899999999763 2233455788
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++|+|+|+++..+... ..+...+. ..+.|+++|+||+|+..... +..+.... ..+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~---~~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLR---RSGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCCC
Confidence 9999999999998765432 22233332 24799999999999864321 11111111 111 2479999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++++.+.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=162.46 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=112.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCe-EEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+..+|+++|++++|||||++++.+..+.. ..+ |.......+.+.+. .+.+|||||++.+..++......+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3577899999999999999999998877655 222 34444455555444 8999999999999999998899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc----CCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK----NRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (182)
+|+|+++... ......+. .....+.|+++++||+|+.+. ..+++...+...... ....+++++||++|+|
T Consensus 164 LVVda~dgv~-~qT~e~i~----~~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVM-PQTIEAIS----HAKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCC-HhHHHHHH----HHHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999876431 11112222 222247899999999999653 334444333221111 1235799999999999
Q ss_pred hHHHHHHHHHH
Q 030149 166 LFEGLDWLSNT 176 (182)
Q Consensus 166 i~~l~~~l~~~ 176 (182)
++++++++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998653
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=149.41 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=112.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCCCCCCcc--------hhhhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
..+.-.|+++|.|++|||||+|++.+.+....++-...+ ..-+..++..+.|+||||...-.. .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 356778999999999999999999999987755533333 223333789999999999544322 33455
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+.++|++++|+|+.++.. ....++...+.. .+.|+++++||+|...+... +...............++++||+
T Consensus 83 l~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHH--HHHHHHHHHhhCCcceEEEeecc
Confidence 789999999999987533 222333333332 46899999999998766441 12222222223334469999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|++.|.+.+...+++
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988764
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=150.58 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=106.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc---eeEEE-EEEcCeEEEEEEcCCCCCCcc--------hhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---FNVET-VQYNNIKFQVWDLGGQTSIRP--------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---~~~~~-~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 82 (182)
.+.-.|+++|++|||||||+|++++.+.....+... ..... ...++..+.++||||...... .....+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456789999999999999999999887654333222 21211 222557999999999754332 233457
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEeccc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..+|++++|+|+++.. .....++...+. ..+.|+++|+||+|+... .......+.+.. .....+++++||+
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~ 154 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISAL 154 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCC
Confidence 8899999999998732 222233333332 246899999999999732 222222222221 2234569999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 155 ~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999999988753
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=142.47 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=103.2
Q ss_pred cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe
Q 030149 45 TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120 (182)
Q Consensus 45 ~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (182)
+.||++..... +.. ....+.+|||||++.+..++..+++++|++|+|+|++++++|+.+..|+..+..... .+.|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe
Confidence 77888865543 333 457899999999999999999999999999999999999999999999888876532 5789
Q ss_pred EEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 121 VLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 121 iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+++|+||+|+.+. ...++.... ....++.++++||++|+|++++|++|.+.+.+.
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999642 222222221 123355799999999999999999999988764
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=155.79 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=110.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|++|+|||||+|++.+.... ...| |.......+.+++..+.+|||||..+.... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 46689999999999999999999987543 2223 333445566778899999999998665432 23567
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+++.. |+.... ..+.|+++|+||+|+... +.+.+. ...+.+++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 899999999999988776654 444432 246899999999999643 211111 12234689999998
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
.|++++++.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999998887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=153.37 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCc--c-cccccceeEEEEEEc-CeEEEEEEcCCCCC----Ccch---hhhccCCCCe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTQA 87 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~---~~~~~~~~d~ 87 (182)
.|+++|.|+||||||++++++.+.. . ...|...+...+.+. +..+.+||+||..+ ...+ ...+++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999976632 2 234666667777776 78999999999632 1122 2334667999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 88 IIYVVDSSDT---ERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
+++|+|+++. ++++....+...+..+. ...++|+++|+||+|+... .+.... +... ...+++++||+++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~-l~~~----l~~~i~~iSA~tg 312 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEE-FKEK----LGPKVFPISALTG 312 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHH-HHHH----hCCcEEEEeCCCC
Confidence 9999999764 56666655555554332 1247899999999998432 222221 2111 1156999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
+|++++++++.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999888654
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=138.09 Aligned_cols=144 Identities=22% Similarity=0.235 Sum_probs=101.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccCCCCeE
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTQAI 88 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (182)
+++|.+|+|||||++++.+..... ..+ |...........+..+.+|||||...... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875322 222 33344555666789999999999887544 334567889999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~ 167 (182)
++|+|+.+..+... .++...+.. .+.|+++|+||+|+...... ...... .+. +++++|+++|.|++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~-----~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS-----LGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh-----cCCCCeEEEecccCCCHH
Confidence 99999976544332 222233322 36999999999999754222 111111 122 58999999999999
Q ss_pred HHHHHHHHHH
Q 030149 168 EGLDWLSNTL 177 (182)
Q Consensus 168 ~l~~~l~~~~ 177 (182)
++++++.+.+
T Consensus 148 ~l~~~l~~~~ 157 (157)
T cd01894 148 DLLDAILELL 157 (157)
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=157.15 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcch-----------hh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||++++++.......+ |.......+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 356999999999999999999999876433222 222333344567889999999996432211 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++|+|+|+.++.+.... ..+..+. ..++|+++++||+|+.++...+++.+.+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 357889999999999887654433 2222222 24689999999999974433344444444333334567899999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++++.+.+...+
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876653
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=137.28 Aligned_cols=154 Identities=23% Similarity=0.224 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc---c-cceeEEEEEEcCeEEEEEEcCCCCCCcc--------hhhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP---T-IGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t-~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 83 (182)
...+|+++|++|+|||||++++.+.......+ + ...........+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999876543222 1 1122222333568899999999765432 2334578
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC-CCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG-ALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.+|++++|+|+.++.+ ....++...+.. .+.|+++++||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 8999999999988722 222333333222 2689999999999973 2222333333322 23345799999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|++++++.|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999997753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=142.04 Aligned_cols=157 Identities=28% Similarity=0.361 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCC-CeEEEEEe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-QAIIYVVD 93 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (182)
+|+++|++|||||||++++..+.+....++...+...... .+..+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988776654444444333333 367899999999999998888889998 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCCHHHHHHHhcc-------------------------
Q 030149 94 SSDT-ERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALDDAAVTEALEL------------------------- 145 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~------------------------- 145 (182)
+.+. .++.....++..++.... .+..|+++++||+|+......+.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9887 677777777766654322 257999999999998654333222222110
Q ss_pred ----------ccccCCccEEEEecccCCC-ChHHHHHHHHH
Q 030149 146 ----------HKIKNRQWAIFKTSAIKGE-GLFEGLDWLSN 175 (182)
Q Consensus 146 ----------~~~~~~~~~~~~~S~~~~~-gi~~l~~~l~~ 175 (182)
.......+.+.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0001135669999998877 69999988864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-24 Score=138.99 Aligned_cols=142 Identities=25% Similarity=0.266 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcc----hhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP----YWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|++|+|||||++++.+... ...++.+ +.+... .+|||||...... .....++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876542 1122222 222222 2699999743222 223347899999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++.+++. ..++..+ ..+.|+++++||+|+... ..+...+..... ....|++++||++|+|++++++.+.
T Consensus 75 ~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 9887652 2333332 136789999999998643 333333333221 1125799999999999999999999
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 88754
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=142.39 Aligned_cols=162 Identities=20% Similarity=0.154 Sum_probs=105.7
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEEEEEE-cCeEEEEEEcCCCCC----------Ccchhh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQY-NNIKFQVWDLGGQTS----------IRPYWR 79 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~----------~~~~~~ 79 (182)
.+....++|+++|++|+|||||++++.+.++ ..+.++.+.+.....+ .+..+.+|||||... +.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3446779999999999999999999998764 3455555533222111 247899999999532 222233
Q ss_pred hccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 80 CYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++ ..+++++++|...+.+... .++...+. ..+.|+++++||+|+.+....+.......... .....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceE
Confidence 3343 3467888999876543322 22223322 24688999999999975433333332222211 11145799
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++||++|+|++++++.+.+.+..
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999887753
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=164.09 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=113.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+..+|+++|+.++|||||+++|.+..+.. ..+ |.......+.+.+..+.||||||++.|..++......+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 4688999999999999999999998766544 211 3334445566678899999999999999999988999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCCCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gi 166 (182)
|+|+++... ......+. .....+.|+++++||+|+... +.+.+...+..... . ...++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~----~a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAIN----HAKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHH----HHHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987421 11112222 222357899999999999653 33334333222111 1 12468999999999999
Q ss_pred HHHHHHHHHH
Q 030149 167 FEGLDWLSNT 176 (182)
Q Consensus 167 ~~l~~~l~~~ 176 (182)
+++++.|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998754
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-26 Score=144.38 Aligned_cols=161 Identities=17% Similarity=0.292 Sum_probs=132.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE----EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE----TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++|+|..++||||++++++.+-|.. +..|++...- .+...+.+..+||++|++++..+...|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 467999999999999999999999998887 7777774432 33446788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+||+.++..||+....|...+.... ...|.++|-||+|+.+.... .....+-.++..++.++.+|++...|+.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~---~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQM---DKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhc---chHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999999986654 47999999999999864221 111112222344566999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|.+|.+.+.++
T Consensus 173 F~YLaeK~~q~ 183 (246)
T KOG4252|consen 173 FAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=135.50 Aligned_cols=150 Identities=24% Similarity=0.188 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEc-CeEEEEEEcCCCCCCcc-------hhhhccCCCCeEE
Q 030149 22 VLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTQAII 89 (182)
Q Consensus 22 v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~ii 89 (182)
++|++|+|||||++++.+.......+ +........... ...+.+||+||...... .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999776553211 333333344443 78999999999776543 3344678999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|+.++.+..... +... ....+.|+++|+||+|+..+....................+++++|+.++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~----~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLEL----LRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHH----HHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887655544 2222 22357999999999999865444443322233334556778999999999999999
Q ss_pred HHHHHHH
Q 030149 170 LDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=152.33 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-EEEEEEcCCCCCC--cch------hhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSI--RPY------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~------~~~~~~~~ 85 (182)
++|+++|.+|+|||||+|++.+.+... ...|.+.....+.+.+. .+.+|||||.... ... +...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999876432 34466666666666554 8899999997331 111 22346889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE-EEEecccCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA-IFKTSAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (182)
|++++|+|++++.++.....+ ..++......+.|+++|+||+|+..... ...... ..+.+ ++++||++|+
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-------~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-------EENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-------hcCCCceEEEeCCCCC
Confidence 999999999998776655332 2233333335789999999999964311 111111 01222 5889999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|++++++.+.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-24 Score=141.25 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=95.4
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEE--EEEEcCeEEEEEEcCCCCC----------Ccch
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~ 77 (182)
..++.+.++|+++|++|+|||||++++.+..+ ..+.++.+.+.. .+..+ ..+.+|||||... +..+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 34558889999999999999999999998763 334445443322 22223 4799999999532 1222
Q ss_pred hhhccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc-CCcc
Q 030149 78 WRCYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK-NRQW 153 (182)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 153 (182)
...+++ .++++++|+|++++-+.... .+...+. ..+.|+++++||+|+..+...+...+........ ...+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~---~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLR---ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHH---HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 223343 46899999999875443332 2222222 2478999999999997543222222222211111 2245
Q ss_pred EEEEecccCCCChH
Q 030149 154 AIFKTSAIKGEGLF 167 (182)
Q Consensus 154 ~~~~~S~~~~~gi~ 167 (182)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=161.55 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=112.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCC----------cch-hhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||+|++.+.+.. ...+ |.+.....+.+++..+.+|||||..+- ..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999988743 2222 334444556678888999999995421 111 123
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887766543 3333322 47899999999999754333333333322222234456899999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=159.31 Aligned_cols=158 Identities=22% Similarity=0.167 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---Ccc-c--ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE---VVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~---~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++|+++|++++|||||++++.+.. +.. + ..|.......+...+..+.+||+||++.+...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998643 211 2 2244455555667779999999999999888888889999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCHHHHHHHhccc---cccCCccEEEEecccCCCChH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDDAAVTEALELH---KIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+++... ......+. ++.. .+.| +++|+||+|+.+....+...+..... .....+.+++++||++|+|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 11112221 2222 3566 99999999997543222222222111 111125789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++++.+.+.+...
T Consensus 156 eL~~~L~~l~~~~ 168 (581)
T TIGR00475 156 ELKKELKNLLESL 168 (581)
T ss_pred hHHHHHHHHHHhC
Confidence 9999998877653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=159.87 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cc--ccc--ceeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTI--GFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~--~t~--~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..+|+++|++++|||||++++....+.. .. .|. +.....+.. .+..+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 577899999999999999999998776654 11 232 222223333 35899999999999999999989999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~ 163 (182)
+|+|+|+++..... ....+..+ ...+.|+++++||+|+... ..+++...+..... . ...++++++||++|
T Consensus 322 aILVVDA~dGv~~Q-T~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQ-TIEAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChh-hHHHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999997743211 11222222 2357899999999999753 23333333322111 1 12468999999999
Q ss_pred CChHHHHHHHHHHH
Q 030149 164 EGLFEGLDWLSNTL 177 (182)
Q Consensus 164 ~gi~~l~~~l~~~~ 177 (182)
.|++++++.+....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987754
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=148.44 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.|+||||||+|++.+.+... ...|.......+.+.+ ..+.++||||..+- ......+++.+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 379999999999999999998765421 2335566677777764 57999999996432 112234578899
Q ss_pred eEEEEEeCC---CcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSS---DTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++++|+|++ +.+.++....+...+.... ...++|+++|+||+|+.......+....+... .....+++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999987 4456666666655554431 12468999999999986442222222222111 11123589999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
+.|++++++.|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998865
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=155.50 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=110.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc-ccc----------ccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS-TIP----------TIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~-~~~----------t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..|++++|+.++|||||+++++... +.. +.+ |.......+.+. .+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999997642 111 211 222222334332 2789999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++...+..+++.+|++|+|+|+++..+......|+... . .+.|+++|+||+|+.... .+...+.+... .....
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~ 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDA 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCc
Confidence 99999999999999999999998876655544443322 2 368999999999986432 23222222211 11112
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..++++||++|.|++++++.|.+.+..
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 248999999999999999999987753
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=151.81 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc----------------------------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
..+.++|+++|++++|||||+++|+...-. ...-|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356799999999999999999999732210 0122555556667778
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--- 136 (182)
+..+.+|||||++++.......+..+|++++|+|++++.+......+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887666666788999999999986322222222222222222 12479999999999752111
Q ss_pred ---HHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 137 ---AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++.+.+.........++++++||++|+|++++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1222222222222234689999999999998744
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=129.48 Aligned_cols=111 Identities=28% Similarity=0.416 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---ccccc--ce--eEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTI--GF--NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~--~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
||+|+|++|||||||++++.+..+.. ..++. .. ...........+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999888761 22222 22 2222223445699999999988887777778899999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 129 (182)
+|.++++++..+..++..+.... ...+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988755433222221 134699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=143.71 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=117.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 80 (182)
..++|+++|.|++|||||+|++++.+-....+ |.+.-...+++++..+.++||+|...-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988665444 44455556667899999999999432111 1234
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|++++|+|++.+-+- ....+.......+.++++++||+|+.+. ...++..+.+..........+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~~-----qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGISE-----QDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCchH-----HHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 46789999999999887432 2223333333468999999999999875 3445555555554445567789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++.+......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999998877654
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=143.97 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=115.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcchh--------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
+.-++++++|.|++|||||+|+|++.+... ...|.++-...+..+++++.++||+|..+..... ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 466999999999999999999999988655 3336667788888999999999999976554432 3457
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|.+++|+|++.+.+-.... +.. ....++|+++|.||.|+..+...... ....+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecC
Confidence 8899999999998863222221 111 23357999999999999876543322 112334699999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
|+|+++|.+.|...+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999999887654
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=150.52 Aligned_cols=149 Identities=23% Similarity=0.223 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTQ 86 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+.......+ |.......+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877543222 44455666777889999999999632 3344556788999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|+|+.+..+... ..+...+.. .++|+++|+||+|+...... ..+ +. .....+++++||.+|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~-~~----~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAE-FY----SLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHH-HH----hcCCCCeEEEeCCcCCCh
Confidence 9999999977543222 223333332 47899999999998654321 111 11 111124899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++++.+.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988743
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=148.67 Aligned_cols=146 Identities=24% Similarity=0.284 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------CcchhhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (182)
++|+++|.+|+|||||++++.+..... ..+ |.......+.+.+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 579999999999999999999877533 222 44455666777889999999999876 223345567899
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (182)
|++++|+|+.++.+... .++...+.. .+.|+++|+||+|+.+. .....+... .++ .++++||++|.
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~------lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS------LGLGEPYPISAEHGR 148 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh------cCCCCCEEEEeeCCC
Confidence 99999999987543322 222233332 37899999999997542 122222111 122 27999999999
Q ss_pred ChHHHHHHHHHH
Q 030149 165 GLFEGLDWLSNT 176 (182)
Q Consensus 165 gi~~l~~~l~~~ 176 (182)
|++++++.+...
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=155.34 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=105.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE----EEEEcCeEEEEEEcCCCCC--------Ccchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE----TVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+++|||||+|++++.......++.+.+.. ...+++..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998775444444443333 3445678999999999763 223334567
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++|+|+|+.+.- ......+...+.. .++|+++|+||+|+.... ....+.... ..+ ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECCC
Confidence 8999999999997642 2222333333332 579999999999986431 111111111 111 257999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++++.+.+.+..
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=151.26 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=109.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc------cc----------ccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV------ST----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~------~~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
.+..|++++|+.++|||||+.+++... +. .+ .-|+......+.+. ++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999997532 11 01 11222333344442 678999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.++...+..+++.+|++|+|+|+++.........|.. ... .+.|+++|+||+|+.... .+...+.+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCC
Confidence 9999999999999999999999988654443333322 221 368999999999986532 22222222211 1112
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...++++||++|.|++++++.|.+.++.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2348999999999999999999887753
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=149.05 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=102.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
..+.++|+++|+.++|||||+++|+.. .... ...|.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356799999999999999999999742 1110 112344445556667
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDD-- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-- 136 (182)
+..+.+|||||++++.......+..+|++++|+|+++.++..... .+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 899999999999888766666778999999999998875321111 1111222221 23589999999999742221
Q ss_pred ----HHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 137 ----AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+++.+.+.........++++++||++|.|+++++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222235789999999999998633
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=124.23 Aligned_cols=157 Identities=27% Similarity=0.338 Sum_probs=125.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------cc---cccceeEEEEEEcC-eEEEEEEcCCCCCCcch
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TI---PTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 77 (182)
.......+|+|.|+.++||||++++++...... .. .|....+....+.+ ..+.+++||||++|..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 345778999999999999999999998766321 11 24445566666644 99999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC-CeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG-AVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
|..+.+.++++|+++|.+++..+ .. ..+..++.. .+ .|+++++||.|+.....++.+.+.+.... ...+++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~---~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi 156 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTS---RNPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI 156 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhh---ccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence 99999999999999999999877 22 233333333 33 99999999999998888888888887543 467799
Q ss_pred EecccCCCChHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~ 176 (182)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998888765
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=132.95 Aligned_cols=151 Identities=25% Similarity=0.231 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCc-------chhhhccCCCCeE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTQAI 88 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 88 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 78999999999999999999765322 2335556677778889999999999974332 2334568899999
Q ss_pred EEEEeCCCcch-HHHHHHHHH----------------------------------------HHHhhc-------------
Q 030149 89 IYVVDSSDTER-LVIAKDEFH----------------------------------------AILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (182)
++|+|+++++. ...+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999977642 222211111 111100
Q ss_pred -----------ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 115 -----------ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 115 -----------~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...-.|+++|+||+|+... ++... +. . ..+++++||++|.|++++++.+.+.+.-
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 0112589999999998643 22221 11 1 1248999999999999999999987753
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=133.98 Aligned_cols=155 Identities=22% Similarity=0.235 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||+++|+.|+|||||+++++...-. . ...|.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999753211 0 111333455667778999999999999999888
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhcc---------
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALEL--------- 145 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~--------- 145 (182)
+..+++.+|++++|+|+.+.... ....++..... .+.|+++++||+|+...... +++...+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876432 23334443322 47899999999998753211 111111111
Q ss_pred -----------------------------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 146 -----------------------------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
......-+|++..||.++.|+..|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 001223568999999999999999999988775
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=131.37 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
.++|+++|+.++|||||+++|+.... . ...-|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999975310 0 0111333334444457789999999999888777
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccccCC
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+...-. ......+..+.. .+.| +|+++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7778889999999999976422 112222332222 3565 7899999998632211 1 12222222222234
Q ss_pred ccEEEEecccCCCCh
Q 030149 152 QWAIFKTSAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi 166 (182)
..+++++||++|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=149.77 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEE----------------cCeEEEEEEcCCCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQY----------------NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~ 74 (182)
+..-|+++|++++|||||++++.+..+... .++++........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998766542 2333433332221 1124899999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------HH
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~~ 137 (182)
..++..+++.+|++++|+|+++. ++++.+ ..+ . ..+.|+++++||+|+.+... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-R---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-H---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999899999999999999873 333222 111 2 24789999999999964210 01
Q ss_pred HHHH-----------Hhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 138 AVTE-----------ALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 138 ~~~~-----------~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.+.. .+..... .....+++++||++|+|+++|.+++....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 1100 0111100 12357899999999999999999886543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=149.34 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCcc-----------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcchh
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
.||+++|+.++|||||+++|+.. .+.. ...|+......+.+.+..+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999752 2211 1124445556678899999999999999999889
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---HHHHHHhccccc--cCCcc
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---AAVTEALELHKI--KNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (182)
..+++.+|++++|+|+.+.. ......++..... .+.|+++|+||+|+...... +++...+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999997642 3344455555543 46899999999998654221 222222221111 22357
Q ss_pred EEEEecccCCC----------ChHHHHHHHHHHHhh
Q 030149 154 AIFKTSAIKGE----------GLFEGLDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~S~~~~~----------gi~~l~~~l~~~~~~ 179 (182)
|++++||++|. |+..+++.+.+.++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999995 799999999887753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=152.04 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=106.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch----------hhhc-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCY- 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~- 81 (182)
+.++|+++|++|||||||+|++.+.+... ..| |.......+.+++.++.+|||||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 46799999999999999999998765421 222 333444456668899999999998765431 1223
Q ss_pred -cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 82 -FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 82 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
...+|++++|+|+++.++. ..++.++.+ .+.|+++++||+|+.+........+.+. +..+++++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 2478999999999886542 233344333 3799999999999864433222222222 223567999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
.+|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988764
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=146.54 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=104.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc------ccccceeEEE----------------E----EE------cCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVET----------------V----QY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------~~t~~~~~~~----------------~----~~------~~~~ 62 (182)
++.++|+++|+.++|||||+++|.+...... .-|....... . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5789999999999999999999975422111 1111111100 0 00 1467
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~ 142 (182)
+.+|||||++++...+......+|++++|+|+++..........+.. +... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~-l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMA-LEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHH-HHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 99999999999988888888889999999999864311222222222 2221 23578999999999754222111122
Q ss_pred hccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 143 LELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..... ...+++++++||++|+|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111110 123678999999999999999999988654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=142.57 Aligned_cols=148 Identities=22% Similarity=0.210 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCc---------chhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+++|.|++|||||.|+|++.+...... |.+..+....+.+..|.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988766444 5556667777888999999999965322 234456788
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|++|+|+|....- ......+...+. ..++|+++|+||+|.... +....++-...+. ..+++||.+|.
T Consensus 84 ADvilfvVD~~~Gi--t~~D~~ia~~Lr---~~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGI--TPADEEIAKILR---RSKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCC--CHHHHHHHHHHH---hcCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 99999999996542 223344444444 246999999999997622 2222222222111 28999999999
Q ss_pred ChHHHHHHHHHHH
Q 030149 165 GLFEGLDWLSNTL 177 (182)
Q Consensus 165 gi~~l~~~l~~~~ 177 (182)
|+.+|.+.+...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=148.44 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=112.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCccc-------------ccccc----eeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+..||+++|+.++|||||+++++. +.+... ..+.+ .....+.+++..+++|||||+.++.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 4567999999999999999999986 222221 11222 3344566788999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH---HHHHHhccccc--cC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA---AVTEALELHKI--KN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---~~~~~~~~~~~--~~ 150 (182)
..+..+++.+|++++|+|+.+... ......+..... .+.|.++++||+|+......+ ++...+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999976532 222333333322 478899999999987543322 22223211111 22
Q ss_pred CccEEEEecccCCC----------ChHHHHHHHHHHHh
Q 030149 151 RQWAIFKTSAIKGE----------GLFEGLDWLSNTLK 178 (182)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~ 178 (182)
..+|++++||++|. |+..|++.+.+.++
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45789999999998 58889988887765
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=126.25 Aligned_cols=162 Identities=36% Similarity=0.610 Sum_probs=141.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.|.-+++++|-.++|||||++.+-.+......||...+...+.+.+.++.-+|.+|+...+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc------------cCCccEEEEecccC
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI------------KNRQWAIFKTSAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~S~~~ 162 (182)
.+.+++.+.+..+..++......+.|+++.+||+|.+.+...++....+..... ......+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999999998888777789999999999999988777776665543211 11345589999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
+.|--+.|.++...
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 99888888777654
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-22 Score=123.32 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=130.4
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.-.++|.++|++..|||||+-.+.++.+.+ +..+.|.+... +.+ .+..+.+||.+|++++..+.+-...++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34557999999999999999999999988855 77788866543 333 56889999999999999999998999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
++++||.+.+.++.....|+.+.... +.....|+|++|.|+.-.. +.++.....+...++..+.+.|.||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~--NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGL--NKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhcc--CCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 99999999999999999999998543 2345568899999974221 1122112222344455677899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++.+|..+...+..+
T Consensus 174 v~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999998887654
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=148.63 Aligned_cols=143 Identities=24% Similarity=0.280 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------hhhcc--CCCCeEEEEE
Q 030149 24 GLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTQAIIYVV 92 (182)
Q Consensus 24 G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (182)
|.+|+|||||+|++.+..... ..| |.......+.+++..+++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999876522 333 333444556678889999999998876543 23332 4789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.+. ...+..+..+ .+.|+++|+||+|+.+........+.+. +..+.+++++||++|+|++++++.
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9987543 2223333322 4799999999999854322221122222 223467999999999999999999
Q ss_pred HHHHH
Q 030149 173 LSNTL 177 (182)
Q Consensus 173 l~~~~ 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=132.19 Aligned_cols=147 Identities=19% Similarity=0.158 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcCeEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
||+++|++|+|||||+++|+...-.. ...|.......+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999996432111 11133344445566788999
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHH
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEA 142 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~ 142 (182)
+|||||+.++.......++.+|++++|+|++++..-. ... ...+.... ...++|+|+||+|+.+.... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999887666666788999999999998753211 111 11222221 12457889999998643211 122222
Q ss_pred hccc--cccCCccEEEEecccCCCChHHH
Q 030149 143 LELH--KIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 143 ~~~~--~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+... .......+++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2211 11122356999999999999764
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=142.65 Aligned_cols=161 Identities=16% Similarity=0.078 Sum_probs=102.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEE------------------c--------CeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY------------------N--------NIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~------------------~--------~~~ 62 (182)
.+.++|+++|+.++|||||+.+|.+..... ..-|.........+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999996532111 11122221111110 0 257
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~ 142 (182)
+.+|||||++++..........+|++++|+|++++.........+... ... ...|+++|+||+|+.++.......+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999887766666667789999999998653111112222222 221 13478999999999754322211121
Q ss_pred hccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 143 LELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..... .....+++++||++|+|+++|++.|...+.
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111110 123578999999999999999999988764
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=124.57 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=111.9
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-cccccccceeEEEEEEc-CeEEEEEEcCCCC----------CCcc
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYN-NIKFQVWDLGGQT----------SIRP 76 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~----------~~~~ 76 (182)
.+.+++....-|+++|.+++|||||||++++.+. ...+.|+|.+..-..+. +..+.++|.||.. .+..
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 3456667788999999999999999999999764 55666777554433332 2239999999932 2333
Q ss_pred hhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 77 YWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 77 ~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...|++. ..++++++|+..+-.- ....+.+++. ..+.|+++++||+|.......................+
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 44455543 5788999999776432 2222333333 35899999999999886544433223332222222333
Q ss_pred E--EEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 A--IFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~--~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
. ++..|+.++.|++++.+.|.+.+...
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 2 88899999999999999999887653
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=133.21 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---------------------------cc-------cccccceeEEEEEEcCeEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++++|||||+.+|+...- .. ..-|.......+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 689999999999999999953210 00 11133445556677899999
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---H---HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-C--
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---L---VIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+.+... + ......+... ... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998777767777888999999999987421 1 1122222222 211 236899999999997421 1
Q ss_pred -HHHHHHHh----ccccccCCccEEEEecccCCCChHH
Q 030149 136 -DAAVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+.+.+.+ .........++++++||++|+|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 12222222 2222233467899999999999873
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=122.80 Aligned_cols=135 Identities=23% Similarity=0.315 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCC----CCCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ----TSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|+.|||||||+++|.+... .+..|....+ .+ .++||||. ..+.........++|+++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-----~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-----YD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-----cc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999987554 3333333221 11 34799994 33344444456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++.+. ....+... -+.|+|=|+||+|+. ++.+.+...+.+.....+ .+|++|+.+|+|+++|.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 887431 11222222 258999999999998 333444444444443333 27999999999999999987
Q ss_pred H
Q 030149 174 S 174 (182)
Q Consensus 174 ~ 174 (182)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=129.82 Aligned_cols=152 Identities=24% Similarity=0.222 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-----c------------ccc-------ccee-----------------EEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-----T------------IPT-------IGFN-----------------VETVQ 57 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-----~------------~~t-------~~~~-----------------~~~~~ 57 (182)
+|+++|+.++|||||++++..+.+.. + .-| .+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998654422 0 000 1111 02233
Q ss_pred EcCeEEEEEEcCCCCCCcchhhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+..+.++||||++.+.......+. .+|++++|+|+..... ......+..+ . ..+.|+++|+||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~---~~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-L---ALNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-H---HcCCCEEEEEECccccCHHH
Confidence 45678999999999888665554453 6899999999876532 2222222222 2 24689999999999865433
Q ss_pred HHHHHHHhcccc-------------------------ccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 136 DAAVTEALELHK-------------------------IKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 136 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.......+.... ......|+|.+|+.+|+|+++|++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333222222111 1122448999999999999999987753
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=144.70 Aligned_cols=156 Identities=22% Similarity=0.197 Sum_probs=104.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----cccceeEEEEEEc----------------CeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQYN----------------NIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----~t~~~~~~~~~~~----------------~~~~~~~D~~g~~ 72 (182)
..+...|+++|++++|||||++++.+....... ++.+......... -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 356778999999999999999999876544322 2444333322210 0137899999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCC---cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSD---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-------------- 135 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-------------- 135 (182)
.+..++...+..+|++++|+|+++ ++++..+. .+. ..+.|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999888888899999999999987 33333221 112 24789999999999852111
Q ss_pred HHHHH-----------HHhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 136 DAAVT-----------EALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 136 ~~~~~-----------~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
...+. ..+..... .....+++++||.+|+|++++++.+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01111 11111111 11357899999999999999998886533
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=116.69 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=125.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccc-eeEEEEEE---cCeEEEEEEcCCCCCC-cchhhhccCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTQ 86 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (182)
.+..+|+|+|..++|||+++++++.+.... +.||+. +....++- ....+.++||.|-... ..+-..|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 577899999999999999999998766443 666766 33333332 3468999999997666 556677888899
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++++|++..+++||+.....-..+-.......+||++++||+|+.++ .+.....++.++....+..+++++.+...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999876544444444555667999999999999754 333344455666667788999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
-|-|-.+...+..
T Consensus 164 ~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 164 YEPFTYLASRLHQ 176 (198)
T ss_pred hhHHHHHHHhccC
Confidence 9999999888764
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=122.37 Aligned_cols=154 Identities=23% Similarity=0.213 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE-cCeEEEEEEcCCCCCC----------cchhhhcc---C
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI----------RPYWRCYF---P 83 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~----------~~~~~~~~---~ 83 (182)
.|+++|++|+|||||++++.+..... ..++.+.+.....+ ....+.+|||||.... ......++ .
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 38999999999999999999655443 45554443322222 2338999999995432 22222333 3
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~ 162 (182)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+..+............... .....+++++|+++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 4678999999876532221 111122222 35899999999999654333333333221111 23456699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNTL 177 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~ 177 (182)
+.|+.++++.|.+.+
T Consensus 156 ~~~~~~l~~~l~~~~ 170 (170)
T cd01876 156 GQGIDELRALIEKWL 170 (170)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=146.72 Aligned_cols=157 Identities=18% Similarity=0.111 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-|+++|+.++|||||++++.+..... ...|+......+.. ++..+.+|||||++.+.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998643221 23344443333333 45678999999999987777777899999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCHHHHHHHhcccc--ccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++... ...... ..++.. .+.| +++|+||+|+.++...+...+.+.... ......+++++||++|+|++
T Consensus 81 VVda~eg~~-~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVM-AQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCc-HHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999976421 111122 222222 2344 689999999975322222222222111 11124679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=131.93 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=105.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC------------Ccchh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS------------IRPYW 78 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~------------~~~~~ 78 (182)
.+.++|+|+|+|++|||||.|.+++.+....+.... .....+.-++..+.|+||||--. +....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 678999999999999999999999999877544333 33333444889999999999211 11122
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-----------------HHHHHH
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-----------------DAAVTE 141 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-----------------~~~~~~ 141 (182)
...++.+|++++++|++++... -....+.....+ .+.|-++|+||.|...... .-++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~-l~p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTP-LHPRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCc-cChHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3347789999999999863221 111222222222 3688899999999643210 112222
Q ss_pred Hhcccc-----ccCCcc----EEEEecccCCCChHHHHHHHHHHHh
Q 030149 142 ALELHK-----IKNRQW----AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~-----~~~~~~----~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+.... ....+| .+|.+||+.|+|++++.++|+.++.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222111 011123 3999999999999999999998764
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=135.89 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=121.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---ccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+-|.++|+...|||||+..+-+.+.....+ |....-..+.. +...+.|.|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 466789999999999999999998777665333 44444444444 357899999999999999999989999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccC----CccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKN----RQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~~~ 164 (182)
++|+++++. .........++....+.|+++++||+|..+. .++.+...+++..... ....++++||++|+
T Consensus 83 ILVVa~dDG-----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG-----VMPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC-----cchhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999875 2233333344555579999999999999844 5666666665543333 24569999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030149 165 GLFEGLDWLSNTLK 178 (182)
Q Consensus 165 gi~~l~~~l~~~~~ 178 (182)
|+++|++.+.-..+
T Consensus 157 Gi~eLL~~ill~ae 170 (509)
T COG0532 157 GIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=138.20 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=104.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCC----------c---------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++... . ...-|.......+..++..+.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999975210 0 0111333333333346778999999999888
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.+... ......+..+ .. .+.| +|+++||+|+.+.... + ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999976421 1122233222 22 3566 6789999998743221 1 22222222222
Q ss_pred cCCccEEEEecccCCC--------ChHHHHHHHHHHHh
Q 030149 149 KNRQWAIFKTSAIKGE--------GLFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~l~~~l~~~~~ 178 (182)
.....+++++||++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235689999999983 57888888877654
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=136.58 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=102.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC-------CCc-----c-------cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG-------EVV-----S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|++. .+. . ..-|.......+..++..+.++||||++++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 110 0 1113333333344467789999999998887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+..+ . ..+.|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-H---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777888999999999976422 1122222222 2 2356755 68999999743221 1 122222211111
Q ss_pred CCccEEEEecccCCC----------ChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKGE----------GLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~ 178 (182)
....+++++|+++|. ++.+|++.|.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 234789999999984 67888888877653
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=118.91 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=131.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++++++|+.|.|||+++++.+.+.+.. +.+|.|.......+ +..++..|||+|++.+......++-+..+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999887 88899977776655 45899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+||+...-++.+...|..++..... +.||++++||.|..... .+...-...+..++.|+++|++.+.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 9999999899999999999987654 69999999999975432 1111112234457779999999999999999
Q ss_pred HHHHHHHh
Q 030149 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~~~ 178 (182)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=136.40 Aligned_cols=147 Identities=19% Similarity=0.152 Sum_probs=95.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc---------------c----cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV---------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|++++|||||+++|++.... . ..-|.......+..++..+.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467799999999999999999999864110 0 111222223334446788999999999888
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..... ......+..+ .. .+.| +|+++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777889999999999976421 1222222222 22 3567 7789999999753221 1 22222222222
Q ss_pred cCCccEEEEecccCCCC
Q 030149 149 KNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (182)
.....+++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999864
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=127.58 Aligned_cols=137 Identities=18% Similarity=0.081 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--c-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEV--V-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||+++|++|+|||||+++++...- . ...-|+......+.+.+..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999963111 0 0112444556667788999999999999988888
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+...++.+|++++|+|+.+...- .....+... ...+.|+++++||+|+.+. +.+...+.+........-...++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~----~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA----DRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH----HHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEec
Confidence 88899999999999999765321 122233322 2247899999999998754 33333333332222222223666
Q ss_pred eccc
Q 030149 158 TSAI 161 (182)
Q Consensus 158 ~S~~ 161 (182)
+|+.
T Consensus 155 isa~ 158 (270)
T cd01886 155 IGEE 158 (270)
T ss_pred cccC
Confidence 6665
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=130.88 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.++..-|.|+|+...|||||+..|.+.+...... |.++.-+.+.. .+.++.|.||||+..|..++..-..-+|+++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3578899999999999999999998777655222 44444444444 7799999999999999999999889999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc----CCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK----NRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (182)
+|+.++|. ......+.+.+....+.|+|+.+||+|.++. .++.+.+.+...... .....++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999776 3344444445556679999999999998765 555555555433222 2456799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++.|-+.+.-+.+-
T Consensus 304 l~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 304 LDLLEEAILLLAEV 317 (683)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988776543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=120.81 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=97.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce---eEE--EEEE-cCeEEEEEEcCCCCCCcchhh-----hccCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF---NVE--TVQY-NNIKFQVWDLGGQTSIRPYWR-----CYFPN 84 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~---~~~--~~~~-~~~~~~~~D~~g~~~~~~~~~-----~~~~~ 84 (182)
+++|+++|.+|+|||||+|++.+..... ..++.+. +.. .+.. ....+.+|||||..+...... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999855432 2222221 111 1111 234789999999764332222 22567
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---------HHHHHHHhccc----ccc--
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---------DAAVTEALELH----KIK-- 149 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---------~~~~~~~~~~~----~~~-- 149 (182)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..+.. .++..+.+.+. ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 233343333333333 2689999999999853211 12222222211 111
Q ss_pred CCccEEEEeccc--CCCChHHHHHHHHHHHhhcC
Q 030149 150 NRQWAIFKTSAI--KGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 150 ~~~~~~~~~S~~--~~~gi~~l~~~l~~~~~~~~ 181 (182)
....++|.+|+. .+.++..+.+.+...|.+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 223469999998 67999999999999988653
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-19 Score=133.81 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=83.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCcc-----------------------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++++|||||+++|+. +.... ...++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4678999999999999999999963 11100 0112234445677789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++......+++.+|++|+|+|+.+... .....++.. ....+.|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~----~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEV----CRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHH----HHhcCCCEEEEEECCccccc
Confidence 999988877778899999999999976532 122233322 22357999999999998654
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=122.52 Aligned_cols=157 Identities=21% Similarity=0.323 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEE-cCeEEEEEEcCCCCCCcch-----hhhccCCCCeE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY-----WRCYFPNTQAI 88 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d~i 88 (182)
||+++|+.+|||||+.+.+..+-.+. ..+|...+...+.. +...+++||+||+..+... ....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999998664332 46788888888875 6779999999999766443 46678999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc---ccC---CccEEEEecc
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALELHK---IKN---RQWAIFKTSA 160 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~S~ 160 (182)
|||+|+...+ +......+...+.. ...++..+.++++|+|+..+....+..+...+.. ... ..+.++.+|.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998444 33333333333322 2346889999999999976544433333222111 111 2478999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
.+. .+-+.|..+...+
T Consensus 160 ~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp TST-HHHHHHHHHHHTT
T ss_pred cCc-HHHHHHHHHHHHH
Confidence 994 6888887777654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=132.12 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=93.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC-------C-----cc-------cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------V-----VS-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~-------~-----~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++.. . .. ..-|.......++.++..+.+|||||++++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3678999999999999999999997320 0 00 112334434444446778999999999988
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecCCCCCCCCH-H----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQDLPGALDD-A----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.+... ......+..+ .. .+.|. ++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7766666778999999999976422 1122222222 22 25664 578999998753221 1 12222222222
Q ss_pred cCCccEEEEecccCCC
Q 030149 149 KNRQWAIFKTSAIKGE 164 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~ 164 (182)
....++++++||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2223789999999885
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=122.56 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc------------cc----------ccceeEEEEEE-----cCeEEEEEEcCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST------------IP----------TIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
+|+++|+.|+|||||+++++....... .. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 799999999999999999976432210 00 11122222222 2478999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987765432 233333221 358999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=135.61 Aligned_cols=154 Identities=25% Similarity=0.251 Sum_probs=111.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc-cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (182)
+..+|+++|+||+|||||.|++.+.... ...| |.+.....+.+.+.+++++|+||...... ....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999976543 2444 66777778888999999999999554432 223333 45
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|+++.|+|+++.++ ......++++ -+.|+++++|++|..+....+...+.+. +..++|++++||++|+
T Consensus 82 ~D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~----~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 82 PDLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLS----KLLGVPVVPTVAKRGE 150 (653)
T ss_pred CCEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHH----HHhCCCEEEEEeecCC
Confidence 799999999988754 2233344444 3789999999999854322221122221 3356789999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++...+.+..++.
T Consensus 151 G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 151 GLEELKRAIIELAESK 166 (653)
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999998765543
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=132.18 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=102.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|+.++|||||+++|++.... ...-|.......+..++..+.++||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 67799999999999999999999862110 01113333333344467889999999998887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+..+ .. .+.|.+ +++||+|+...... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999976422 1222222222 22 357865 68999999742111 1 222222222222
Q ss_pred CCccEEEEecccCCC----------ChHHHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGE----------GLFEGLDWLSNTL 177 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gi~~l~~~l~~~~ 177 (182)
....+++++||++|. ++.++++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 245789999999875 5677777777654
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=138.38 Aligned_cols=115 Identities=21% Similarity=0.145 Sum_probs=89.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCC--------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..||+|+|+.|+|||||+++|+.... . .+..|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 35678999999999999999999974211 0 12335556666788899999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
++...+..+++.+|++++|+|+++....... ..+.... ..+.|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~----~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD----RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH----hcCCCEEEEEECCCCCCC
Confidence 9988888899999999999999887654433 3333322 247899999999998754
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=121.78 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=111.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC-----Ccch---hhhcc-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS-----IRPY---WRCYF- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~~---~~~~~- 82 (182)
.....|+|.|.||+|||||++.+...+... ...|.+.+.+.+..+..+++++||||.-+ .... ....+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 467899999999999999999998876533 44588899999999999999999999422 1111 11122
Q ss_pred CCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 83 PNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.-.++++|+||.+... +.+.....+..+.... +.|+++|+||+|..+....++........ .......+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----~~~~~~~~~~ 318 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----GGEEPLKISA 318 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----ccccccceee
Confidence 2368999999997755 4555556666665543 48999999999998665555554443322 1222567888
Q ss_pred cCCCChHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNT 176 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~ 176 (182)
..+.+++.+...+...
T Consensus 319 ~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 319 TKGCGLDKLREEVRKT 334 (346)
T ss_pred eehhhHHHHHHHHHHH
Confidence 8888888877776665
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-20 Score=135.58 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=120.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc---eeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|+.|+||||||-++...++....|..- .....+.-......++|++..++-+......++.+|+++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 678999999999999999999999988877444211 11122222556689999998877777777789999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhccc--CCCeEEEEeecCCCCCCCCH--HH-HHHHhccccccCCcc-EEEEecccCCCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQDLPGALDD--AA-VTEALELHKIKNRQW-AIFKTSAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (182)
++.+++.+++.+...|...+++... .++|+|+|+||+|+.+.... +. +.....+ ...+ .+++|||++-.+
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLAN 162 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhhh
Confidence 9999999999999888888877542 36899999999999765433 22 2222221 1111 289999999999
Q ss_pred hHHHHHHHHHHHh
Q 030149 166 LFEGLDWLSNTLK 178 (182)
Q Consensus 166 i~~l~~~l~~~~~ 178 (182)
+.|+|.....++.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999998776543
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=122.07 Aligned_cols=154 Identities=26% Similarity=0.297 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeE-EEEEEcCCCC-------CCcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIK-FQVWDLGGQT-------SIRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~-~~~~D~~g~~-------~~~~~~~~~~~~~d 86 (182)
..|.++|-|++|||||++++...+... ...|...+...+.+++.. +.+-|.||.- .+.-....+++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 568999999999999999998766422 233555666677776654 9999999932 22333455678899
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.++||+|.+.+ ..++.+...+.++-.+ ....+.|.++|+||+|+.+. .+...+.+...... --++++||+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~---~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQN---PHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCC---CcEEEeeecc
Confidence 99999999988 6666666555544332 34457899999999999643 22222222221111 1399999999
Q ss_pred CCChHHHHHHHHHH
Q 030149 163 GEGLFEGLDWLSNT 176 (182)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (182)
++|++++.+.+.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=124.04 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--cc-----------------------cccccceeEEEEEEcCeEEEEEEcCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV--VS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..+|+++|++|+|||||+++++...- .. ...++......+.+++.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999974211 00 011233445567789999999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
.++.......++.+|++|+|+|+++... .....++... . ..+.|+++++||+|+....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCCC
Confidence 9887777777899999999999976532 1122333222 2 2478999999999986553
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=134.47 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=98.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|+...-.. ..-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3677999999999999999999996432110 0012333344455
Q ss_pred EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--
Q 030149 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-- 135 (182)
.++..+.++||||++.+.......+..+|++++|+|+..... ........+..... ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--ccchHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 577899999999998887666666789999999999976421 11111111222221 257899999999974321
Q ss_pred HHHHHHHhccc--ccc-CCccEEEEecccCCCChHHHH
Q 030149 136 DAAVTEALELH--KIK-NRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 136 ~~~~~~~~~~~--~~~-~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.+++...+... ... ....+++++||++|.|+.++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 12222222110 111 235789999999999998753
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=132.21 Aligned_cols=145 Identities=21% Similarity=0.166 Sum_probs=96.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC------c---------c----cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV------V---------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~------~---------~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|+.... . . ..-|+......+..++..+.++|+||++++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 5679999999999999999999985211 0 0 1113333344455578899999999999987
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.+... ......+... .. .++| +++++||+|+.+.... + ++...+....+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999876532 2222333332 22 3566 7889999999753211 2 222222222223
Q ss_pred CCccEEEEecccCCC
Q 030149 150 NRQWAIFKTSAIKGE 164 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~ 164 (182)
....+++++|+.+|.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 346889999999884
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=131.09 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEEEcCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
++|+++|+.++|||||+++|+...-.. ..-|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996322100 01133444555556788
Q ss_pred EEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHH
Q 030149 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAV 139 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~ 139 (182)
++.++||||++++.......+..+|++++|+|+.....- ..... ..+..... ..++++++||+|+.+.... +++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~-~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRH-SYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHH-HHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 999999999998877666778899999999998765321 11111 12222221 3468999999999753211 112
Q ss_pred HHHhcc--ccccCCccEEEEecccCCCChHH
Q 030149 140 TEALEL--HKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+.+.. ........+++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222211 01112356799999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=138.13 Aligned_cols=159 Identities=18% Similarity=0.098 Sum_probs=101.4
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccc------------------------------------cccc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST------------------------------------IPTI 49 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------------------------------------~~t~ 49 (182)
..++......+.++|+++|++++|||||+++|+...-... .-|.
T Consensus 13 ~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Ti 92 (632)
T PRK05506 13 LAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92 (632)
T ss_pred HHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCc
Confidence 3444555557789999999999999999999975321110 0122
Q ss_pred ceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 50 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
......+..++..+.++||||++++.......+..+|++++|+|+.....- .....+ .+.... ...++++++||+|
T Consensus 93 d~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~-~~~~~~--~~~~iivvvNK~D 168 (632)
T PRK05506 93 DVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHS-FIASLL--GIRHVVLAVNKMD 168 (632)
T ss_pred eeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHH-HHHHHh--CCCeEEEEEEecc
Confidence 233444555778999999999988766666668899999999999654221 111111 122221 1367899999999
Q ss_pred CCCCCC--HHHHHHHhcc--ccccCCccEEEEecccCCCChHH
Q 030149 130 LPGALD--DAAVTEALEL--HKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 130 l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+.+... .+++...+.. ........+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 974211 1222222211 11122345799999999999874
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=128.54 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=101.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------CC------cc-------cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------EV------VS-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|+.++|||||+++|.+. .. .. ..-|.......++.++..+.++||||+.++.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 57799999999999999999999621 10 00 1114444444444467889999999999887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-HHHH----HHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-AAVT----EALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~~~~----~~~~~~~~~ 149 (182)
.........+|++++|+|+.+... ......+. ++. ..+.| +|+++||+|+.+.... +.+. +.+......
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~---~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LAR---QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHH---HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 766666778999999999876422 11122222 222 23677 5789999999743211 1121 111111122
Q ss_pred CCccEEEEeccc---CCCC-------hHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAI---KGEG-------LFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~---~~~g-------i~~l~~~l~~~~~ 178 (182)
...++++++|+. +|.| +.+|++.+.+.++
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 235789999876 4544 6788888777653
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-19 Score=131.70 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=100.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------------------c-------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------------S-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|+.++|||||+.+|+... .. . ..-|+......+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 567999999999999999999986411 00 0 1113444455566688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---H---HHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---L---VIAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
..+.++||||+.+|.......+..+|++++|+|+..... + ......+... .. .+.| +|+++||+|....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccccc
Confidence 999999999999998888888899999999999976420 1 1122222222 22 3555 6799999995321
Q ss_pred ----CCHH----HHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 134 ----LDDA----AVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 134 ----~~~~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
...+ ++...+.........++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1122 2222232222233468899999999999864
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=117.12 Aligned_cols=127 Identities=28% Similarity=0.401 Sum_probs=80.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhc---cCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY---FPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (182)
+...|+++|+.|||||+|...|..+.......++..+. .... .+..+.++|+||+++.+...... ...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45689999999999999999999987665544443322 2222 45689999999999988755554 78899999
Q ss_pred EEEeCCC-cchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 90 YVVDSSD-TERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
||+|++. +.......+++-.++.... ....|++|+.||.|+........+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 9999974 3344555555555554422 4578999999999997654454444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=130.00 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC---------------------------cc-------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|+.++|||||+.+|+...- .. ..-|+......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 5679999999999999999999863110 00 1113334444555678
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHH-------HHHHHHHHHHhhcccCCC-eEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLV-------IAKDEFHAILEEEELRGA-VVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~ 132 (182)
..+.++|+||+++|.......+..+|++|+|+|+.+. .++ .....+.. ... .+. ++|+++||+|+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~-~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALL-AFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHH-HHH---cCCCcEEEEEEcccCCc
Confidence 8999999999999999888889999999999999763 121 22222222 222 345 5788999999862
Q ss_pred C-CC-------HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 133 A-LD-------DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 133 ~-~~-------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
. .. .+++...+....+....++++++||++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 11 122333333223333457899999999999854
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=129.47 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=105.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccc--eeEEE----------E---EE-------------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVET----------V---QY------------- 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~--~~~~~----------~---~~------------- 58 (182)
..+..++|+++|+..+|||||+.+|.+..... ..-|+. +.... . .+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34678999999999999999999998643322 111211 11100 0 00
Q ss_pred -----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 59 -----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
....+.++|+||++.+.......+..+|++++|+|+.++.........+ .+..... -.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcC--CCcEEEEEecccccCH
Confidence 0247899999999988877777788999999999998641111112222 2222222 3578999999999753
Q ss_pred CCHHHHHHHhcccc--ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 134 LDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
...++..+.+.... ......+++++||++|.|+++|++.|.+.++
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 22222222222111 0124678999999999999999999987654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-18 Score=104.88 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhccCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
+|+++|.+|+|||||+|+|.+.+... ...|.......+.+.+..+.++||||...... .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865433 22244455566677899999999999644211 123345889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
|++++|+|+.++.. +.....+..+ . .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 99999999876321 1222222222 2 58999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=124.71 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--c----------------cccccceeEEEEEEcC---eEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--S----------------TIPTIGFNVETVQYNN---IKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~----------------~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (182)
.+..|+.|+.+...|||||..+++...-. . ..-|+......+.|.+ +.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 67789999999999999999999642210 0 1113334444555555 8999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
|.......+.-|+++|+++|++..-.-.-....+..+ + .+..+|.|+||+|++.. +.+++....... +..+..
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence 9999999999999999999998764333333333333 2 47889999999999876 455555444332 233444
Q ss_pred EEEEecccCCCChHHHHHHHHHHHh
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++.+||++|.|++++++.+.+.++
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 7999999999999999999998875
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=127.55 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=81.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCCcc----------------c-------ccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS----------------T-------IPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~~~----------------~-------~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++++|||||+++++. +.... . .-++......+.+++..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999852 11100 0 112223345567789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
|+.++.......++.+|++|+|+|+.+... .....++. ... ..+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccC
Confidence 999888777778899999999999976421 12223332 222 24789999999999854
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=120.15 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=113.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-CeEEEEEEcCCCCC---------Ccchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTS---------IRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~---------~~~~~~~~ 81 (182)
...+.|.++|-+++|||||+|++.+..... ...|.+.+...+.+. +..+.+-||.|.-. |.+.. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 466899999999999999999999766432 566888888888885 68999999999322 22222 33
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
...+|+++.|+|+++|....... ....++........|+++|.||+|+..+.. ........ .+ ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~~--~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG---SP--NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc---CC--CeEEEEec
Confidence 56799999999999995443333 333444455556799999999999875433 11111111 11 48999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 030149 162 KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~ 179 (182)
+|.|+++|.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998874
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=116.34 Aligned_cols=155 Identities=25% Similarity=0.244 Sum_probs=109.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCC-------CCcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 84 (182)
.-..+|+++|.|++|||||++.+.+.+... ...|.......++|++..++++|+||.- ..........++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 345799999999999999999998766433 3447778888899999999999999832 112345567899
Q ss_pred CCeEEEEEeCCCcch-HHHHHHHH----------------------------------------HHHHhh----------
Q 030149 85 TQAIIYVVDSSDTER-LVIAKDEF----------------------------------------HAILEE---------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~---------- 113 (182)
||++++|+|+..+.. .+.+...+ ..+++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999976443 22222211 111110
Q ss_pred --------------cccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 114 --------------EELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 114 --------------~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....=+|.+.|.||+|+.+....+.+.+.. .++.+||..+.|+++|.+.+.+.+.-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 000126899999999998643333332222 48999999999999999999988754
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=118.75 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---------------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...... ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999997432110 122334445667778899999999999888777
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...++.+|++++|+|+++...... ...+.... ..+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 8888999999999999987654322 22233222 246899999999998765
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=111.59 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
++|+++|.+|+|||||+|++++.+.... ..|...........+..+.++||||..+... .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999998765432 2355566666677889999999999654321 11223
Q ss_pred cCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc---cccccCCccEEEE
Q 030149 82 FPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE---LHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (182)
...+|++++|+|+.+.. ......+++...+. .....++++++|++|...+...++...... +...+..+-.+..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 46789999999987622 11122223333222 112357899999999765543333211110 0011111222333
Q ss_pred ec-----ccCCCChHHHHHHHHHHHhh
Q 030149 158 TS-----AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S-----~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+ +..+.++++|++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 56678899999999998876
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-20 Score=118.72 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++++|+|.-|+|||+++.+.....+.. |..|++... ...+++ -.++++||..|++++..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 789999999999999999999888877 777887432 233443 36789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
||+++..+|+....|..++-... .....|+++..||||..... ..+....+.....++.-...+++|++.+.+++|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 99999999999999988875542 22346899999999975332 122122222222233333499999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+-..+.+++..
T Consensus 185 a~r~lVe~~lv 195 (229)
T KOG4423|consen 185 AQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=116.03 Aligned_cols=159 Identities=24% Similarity=0.274 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC-------CCcchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-------SIRPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d 86 (182)
--|.++|-|++|||||++.+...+.-. ...|...+...+.. ....|.+-|.||.- ...-....+++.+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 357899999999999999998765432 23355566666665 66779999999932 12223445677899
Q ss_pred eEEEEEeCCCcch---HHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccE-EEEecc
Q 030149 87 AIIYVVDSSDTER---LVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWA-IFKTSA 160 (182)
Q Consensus 87 ~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~S~ 160 (182)
++++|+|++..+. .++......++..+ ....++|.++|+||+|+..+. ..+...+.+. +...+. .+.+|+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa 315 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISA 315 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeeh
Confidence 9999999976553 44443333333322 444689999999999976432 2233333332 222222 222999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
.+++|++++...+.+.+.+.
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=130.71 Aligned_cols=143 Identities=17% Similarity=0.059 Sum_probs=96.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--c-------------------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..||+|+|++++|||||+++|+...-. . ..-|+......+.+++..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 56779999999999999999999632110 0 11134455667778999999999999998
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...+...++.+|++++|+|+.+...... ...+.... ..+.|+++++||+|+.... .+...+.+..........
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQAN----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCcee
Confidence 88888888999999999999987544322 22333322 2468999999999998643 333333332221112222
Q ss_pred EEEEecccCC
Q 030149 154 AIFKTSAIKG 163 (182)
Q Consensus 154 ~~~~~S~~~~ 163 (182)
..+++|+..+
T Consensus 162 ~~ipis~~~~ 171 (689)
T TIGR00484 162 IQLPIGAEDN 171 (689)
T ss_pred EEeccccCCC
Confidence 2556665544
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=115.74 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c-----------------cccccceeEEEEEEc----------CeEEEEEEc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S-----------------TIPTIGFNVETVQYN----------NIKFQVWDL 68 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~D~ 68 (182)
.+|+++|+.++|||||+.+|+...-. . +.-|+......+.+. +..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999743211 0 011222333333343 678999999
Q ss_pred CCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
||+.++......+++.+|++++|+|+.+..+... ...+..... .+.|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999987654332 223333222 367999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=108.43 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=119.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC---CCCeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTQAIIY 90 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~ 90 (182)
+.+...|+++|+.+||||+|.-.+..+......+++..+.....++.....++|.||+++.+.....++. .+-++++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3555789999999999999999999887777777888888888888888999999999999888777777 6899999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCCCCCHHHHHHHhccc---------------------
Q 030149 91 VVDSSDTE-RLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPGALDDAAVTEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|..... .......++-+++... .....|++++.||.|+.-....+.+.+.+...
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99975432 2333334444443332 34568999999999996543443332222110
Q ss_pred --------------cccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 147 --------------KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 147 --------------~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
..+...+.|.++|++++ +++++-+|+.+.+
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 11113566999999999 8999999987653
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=130.62 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=84.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+|+|++++|||||+++|+...- . ...-|+......+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 5678999999999999999999964210 0 112245555667778999999999999988
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...+...++.+|++++|+|+.+...-. ....+... ...+.|.++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~----~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA----DKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence 8788888899999999999997653211 12222222 2246899999999998754
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=120.40 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=108.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc----eeEEEEEEcCeEEEEEEcCCCCC-Ccc--------hhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS-IRP--------YWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 81 (182)
+..++|+++|+||+|||||+|+|...+.....|..| .-...++.++.++.+.||+|..+ -.. -....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456999999999999999999999988777666444 44555667999999999999654 111 12344
Q ss_pred cCCCCeEEEEEeCCC--cchHHHHHHHHHHHHhh-----cccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCcc
Q 030149 82 FPNTQAIIYVVDSSD--TERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQW 153 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~-----~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 153 (182)
+..+|++++|+|+.. .++-..+...+...-.. ......|++++.||+|+..+... ......+.+. ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 678999999999933 22222222222222111 22234789999999999765211 1111111111 112233
Q ss_pred E-EEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 A-IFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~-~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+ ..++|+++++|++.|.+.+.+.+...
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 3 56699999999999999998887654
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=128.34 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=82.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCC------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--GEV------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..||+++|++++|||||+++|+. +.. . ...-|+......+.+.+..+.++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 5678999999999999999999963 110 0 011244455566777899999999999988
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+.......++.+|++++|+|+...-... ....+.... ..+.|.++++||+|+...
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~----~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQAD----KYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 7777777788999999999987653222 122333332 246889999999998754
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=118.80 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=103.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------------------Ccc----------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------------------VVS----------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------------------~~~----------~~~t~~~~~~~~~~~~ 60 (182)
...++++++|+..+|||||+-+|+... +.. ..-|+......++-+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 578999999999999999999986211 000 1124444455555577
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hH--HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RL--VIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.++|+||+.+|...+......+|+.|+|+|+...+ +| .........+...++ -..+|+++||+|+.+. +
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w-d 161 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW-D 161 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc-C
Confidence 88999999999999988888889999999999998763 11 112222222223322 4678999999999863 3
Q ss_pred HHHHH-------HHhccccccCCccEEEEecccCCCChHHH
Q 030149 136 DAAVT-------EALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
.+.+. .............+|+++|+..|.|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 32222 21112222334678999999999997653
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=111.46 Aligned_cols=164 Identities=19% Similarity=0.278 Sum_probs=111.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccc---cccc-eeEEEEEEcCeEEEEEEcCCCCC-------Ccchhhhcc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTI---PTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~---~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (182)
..++++|+++|.+|+||||++|+++.+...+.. .+.. .+.....++...+.+||+||-++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 468899999999999999999999976554422 1222 33334455779999999999654 555667788
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH---------HHHHHHhc-----cccc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD---------AAVTEALE-----LHKI 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~---------~~~~~~~~-----~~~~ 148 (182)
...|.+++++++.++.--. ....+.++.... -+.++++++|.+|...+... ..+.+... ....
T Consensus 116 ~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRALGT-DEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccccC-CHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999998775211 123444443322 24899999999998655211 11111110 0111
Q ss_pred cCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 149 KNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
..+-.|++..+...+.|++++...++..++..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 12244688899999999999999999887643
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-16 Score=111.26 Aligned_cols=154 Identities=25% Similarity=0.233 Sum_probs=96.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCc-------ccccccceeEEEE-------------------E-EcCeEEEEEEcCCC-
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVV-------STIPTIGFNVETV-------------------Q-YNNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 71 (182)
|+++|.|++|||||++++.+.... ...|+.+...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 2334444332211 0 12367999999996
Q ss_pred ---CCCcchhh---hccCCCCeEEEEEeCCCc-------------chHHHH-------HHH-------------------
Q 030149 72 ---TSIRPYWR---CYFPNTQAIIYVVDSSDT-------------ERLVIA-------KDE------------------- 106 (182)
Q Consensus 72 ---~~~~~~~~---~~~~~~d~ii~v~d~~~~-------------~s~~~~-------~~~------------------- 106 (182)
++...+.. ..++++|++++|+|+... +..... ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33343333 358999999999999631 111100 000
Q ss_pred ---------------------HHHHHhh---------------------cccCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 107 ---------------------FHAILEE---------------------EELRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 107 ---------------------~~~~~~~---------------------~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
+..+++. .....+|+++++||+|+... ++..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0000000 01235799999999998533 22222222
Q ss_pred cccccCCccEEEEecccCCCChHHHHH-HHHHHHhh
Q 030149 145 LHKIKNRQWAIFKTSAIKGEGLFEGLD-WLSNTLKS 179 (182)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~l~~-~l~~~~~~ 179 (182)
. .....+++++||+.+.+++++.+ .+.+.++.
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 22345699999999999999998 58888754
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=116.50 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=72.7
Q ss_pred eEEEEEEcCCCCCC-----cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.|+||||.... .......+..+|++++|+|+.+..+..+ ..+...+... ..+.|+++|+||+|+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 46789999996542 2234557899999999999977533332 2222322221 11359999999999864222
Q ss_pred --HHHHHHHhccc--cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 136 --DAAVTEALELH--KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.+.+.+..... ........+|++||+.|.|++++.+.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444433211 11223446999999999999999998875
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=112.23 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=101.8
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (182)
.||.|.....+.+++..+.+||++|+...+..|..++.+++++++|+|.++. ..+.+....+..+++...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4566777778888999999999999999999999999999999999999874 567777788888888777
Q ss_pred cCCCeEEEEeecCCCCCC------------------CCHHHHHHHhccccc-----cCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPGA------------------LDDAAVTEALELHKI-----KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..++|+++++||.|+..+ .+.+.....+..++. ....+....++|.+.+++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 678999999999996321 122222222221111 123455677899999999999998
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 8887754
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=124.57 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=78.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCc---------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc
Q 030149 23 LGLDNAGKTTILYRLQMGEVV---------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
+|++++|||||+++|+...-. ....|++.....+.+.+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999532110 01224555566777899999999999998887778888
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+|++++|+|++........ ..+.... ..+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 9999999999999876544322 2333322 246899999999998754
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=120.11 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=119.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc--cc-ccccceeEEEEEEcCeEEEEEEcCCCCCC-----cchh----hhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--ST-IPTIGFNVETVQYNNIKFQVWDLGGQTSI-----RPYW----RCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~----~~~ 81 (182)
......++++|.|++|||||++.+...... +| .+|.+.-.+.+.+...+++++||||.-+. ..+. ...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 477889999999999999999999766543 33 34666778888889999999999994322 1111 111
Q ss_pred cCCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 82 FPNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+--.+++|++|++... |.....+.+..+.-. ..++|+|+|+||+|+..+.+.++-.+.+-+......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22347899999998754 444555555555333 35899999999999987766655555554444455668899999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
+.+.+|+-++....++.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999999988888877654
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-16 Score=111.84 Aligned_cols=134 Identities=23% Similarity=0.326 Sum_probs=101.0
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (182)
.||.|+....+.+++..+.+||++|+...+..|..++.+++++|+|+|.++. ..+.+....+..+++...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3466777777888899999999999999999999999999999999999873 467778888888888777
Q ss_pred cCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhcc----ccc--cCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPGA-----------------LDDAAVTEALEL----HKI--KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~----~~~--~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..+.|+++++||.|+... .+.+...+.+.. ... ....+-...++|.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 778999999999997321 111222222211 111 123455678889999999999998
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8877654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=110.85 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=81.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccc-----------ccccceeEEE--EEEcC--eEEEEEEcCCCCCCcc----
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRP---- 76 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~---- 76 (182)
-.++|+++|++|+|||||+|++++..+... .+|....... +...+ .++.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998776442 2233333322 23334 5799999999543211
Q ss_pred ----------------------hhhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 77 ----------------------YWRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 77 ----------------------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+...+. .+|+++|+++.+...-.......+..+ . ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l----~-~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL----S-KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH----h-ccCCEEEEEECCCcCC
Confidence 0112222 478899999976522111112222222 2 2689999999999965
Q ss_pred CCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..+.....+... ......++++|.....
T Consensus 158 ~~e~~~~k~~i~-~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIM-EDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHH-HHHHHcCCceECCCCC
Confidence 323322222222 2223345566665543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=112.32 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=114.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------cccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------~~~t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
.+..|..++.+...|||||..+++.....- +.-|+..+...+.| ..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 455788999999999999999997432110 11244444455555 3488999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
-+|.-.....+..|.+.++++|++..-.-..+...+..+- .+.-++-|+||+||+.. +++.+.+...... ...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A-dpervk~eIe~~i-Gid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA-DPERVKQEIEDII-GID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC-CHHHHHHHHHHHh-CCC
Confidence 9998888888999999999999987644344444444442 47889999999999865 5555555444221 222
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....+.+||++|.||+++++.+.+.++.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCC
Confidence 3348999999999999999999988753
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-16 Score=107.30 Aligned_cols=115 Identities=15% Similarity=0.028 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCcchhhhcc--------CCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 62 KFQVWDLGGQTSIRPYWRCYF--------PNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+.++|||||-++...+.... ...-++++++|+....+-... ..++... ......+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~-s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSL-SIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHH-HHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHH-HHHhhCCCCEEEeeeccCccc
Confidence 799999999988766554332 345688999998654432222 2222221 222224799999999999986
Q ss_pred CCC--------------------HHHHHHHhccccccCCcc-EEEEecccCCCChHHHHHHHHHHH
Q 030149 133 ALD--------------------DAAVTEALELHKIKNRQW-AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 133 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+.. .....+.+.+........ +++++|+.+++|+++++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 122222222222233344 799999999999999999887765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=95.08 Aligned_cols=138 Identities=26% Similarity=0.268 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC----CCcchhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++++|..|+|||||.+++-+..... ..|..+. +.+ =-.+||||.. ...........++|+++++-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAve-----~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAVE-----FND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-cccceee-----ccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 78999999999999999998665432 1122111 111 0135999943 2222334456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+++++. ....+..+ ..+|+|-+++|.|+.++.+.....+.+.+.. .-++|++|+.++.|++++++.|.
T Consensus 75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 888642 11222222 2466999999999997655555555554433 22499999999999999999886
Q ss_pred HH
Q 030149 175 NT 176 (182)
Q Consensus 175 ~~ 176 (182)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=107.09 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred eEEEEEEcCCCCCCc---chhhhc---cCC--CCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 61 IKFQVWDLGGQTSIR---PYWRCY---FPN--TQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~---~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
..+.+||+||+.+.. ..+..+ +.. ++++++++|+....+.... ..++...... ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 379999999976543 222212 222 8999999999654432222 2222221111 12479999999999998
Q ss_pred CCCCHHHHHHHhcc-------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 132 GALDDAAVTEALEL-------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
...+.+...+.+.. ........+++++|+++++|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 66554444333321 0011223579999999999999999999988754
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=104.88 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=103.0
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc----ccccccc---------ee---EEEEEE----------------
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIG---------FN---VETVQY---------------- 58 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----~~~~t~~---------~~---~~~~~~---------------- 58 (182)
+...+++.-|+|+|..|||||||+++|...-.. +|.-..+ .+ ..+++|
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 456688899999999999999999999632111 1100000 00 000100
Q ss_pred ---------------------cCeEEEEEEcCCCCCCcchhh------hc--cCCCCeEEEEEeCCCcchHHHHHHHHHH
Q 030149 59 ---------------------NNIKFQVWDLGGQTSIRPYWR------CY--FPNTQAIIYVVDSSDTERLVIAKDEFHA 109 (182)
Q Consensus 59 ---------------------~~~~~~~~D~~g~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (182)
...++.++||||+-+...... .. ....-+++|++|..+..+-.-....+..
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 234689999999765433221 11 1235788999997543322222223333
Q ss_pred HHhhcccCCCeEEEEeecCCCCCCCCHHHH-------HHHhcc-c---------------cccCCccEEEEecccCCCCh
Q 030149 110 ILEEEELRGAVVLIFANKQDLPGALDDAAV-------TEALEL-H---------------KIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 110 ~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~-------~~~~~~-~---------------~~~~~~~~~~~~S~~~~~gi 166 (182)
....+.....|.|++.||+|+.......+. .+.+.. . .....+++.+.+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 333344468999999999999876443222 222221 0 00124778999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|..+.+.+.+
T Consensus 253 ddf~~av~~~vdE 265 (366)
T KOG1532|consen 253 DDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887765
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=107.42 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=69.4
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 138 (182)
.+..+.++||+|...-... ....+|.++++.+....+....... .+++ ...++|+||+|+......+.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHH
Confidence 3578999999996633222 3557999999987544443333221 1222 22389999999875433333
Q ss_pred HHH----HhccccccC--CccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 139 VTE----ALELHKIKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 139 ~~~----~~~~~~~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
... .+....... ...|++.+||+++.|++++++.+.+.+..+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 322 222211111 124799999999999999999999887643
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=101.76 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------hhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
++|+++|.+||||||++|.+++...... ..|..+........+..+.++||||-.+... .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998876442 2255566666678999999999999432211 11123
Q ss_pred cCCCCeEEEEEeCCCcch-HHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHH-----HhccccccCCccEE
Q 030149 82 FPNTQAIIYVVDSSDTER-LVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTE-----ALELHKIKNRQWAI 155 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~ 155 (182)
....|++++|++..+... -.....++..++... ....++|+.|..|...+...++..+ .+. ...+..+-+|
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~-~li~~c~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQ-ELIEKCGGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHH-HHHHHTTTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHh-HHhhhcCCEE
Confidence 467899999999873321 112223344443322 2356899999999776655433333 111 1122223346
Q ss_pred EEeccc------CCCChHHHHHHHHHHHhhc
Q 030149 156 FKTSAI------KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 156 ~~~S~~------~~~gi~~l~~~l~~~~~~~ 180 (182)
...+.+ ....+.+|++.+-+.+.+.
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 655555 3456888888887777654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=109.39 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=112.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--ccc-------cc----------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VST-------IP----------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~~-------~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..-.||+|+.+...|||||+..++.+.- ... .. |+-...-.+.|++.+++++||||+.+|.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 3456899999999999999999985432 111 11 1122233467789999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---hccc--cccC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---LELH--KIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---~~~~--~~~~ 150 (182)
......+.-+|.+++++|+.+.. ....+-.+.+.+. .+.+.|+|+||+|.+...-.+-+.+. +... ....
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999997643 1222333333333 46778899999998765333333222 2211 2234
Q ss_pred CccEEEEecccCCC----------ChHHHHHHHHHHHhh
Q 030149 151 RQWAIFKTSAIKGE----------GLFEGLDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~l~~~l~~~~~~ 179 (182)
..+|++..|+..|. ++..||+.|.+.++.
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 67889999998865 688899988887653
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=106.77 Aligned_cols=78 Identities=27% Similarity=0.270 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--c-ccccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--T-IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~-~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
++|+++|.|++|||||+|++.+..... + ..|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776532 2 123233322211 1236789999999
Q ss_pred CC----CCcchhh---hccCCCCeEEEEEeCC
Q 030149 71 QT----SIRPYWR---CYFPNTQAIIYVVDSS 95 (182)
Q Consensus 71 ~~----~~~~~~~---~~~~~~d~ii~v~d~~ 95 (182)
.. ....+.. ..++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2233333 3488999999999996
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=102.39 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=86.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.....|+++|.+|+|||||++.+.+..... .....+. .......+.++.++||||.. .. .....+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 556789999999999999999998642211 2222221 11122367889999999854 22 2334678999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecCCCCCCCC-HHHHHHHhccccc--cCCccEEEEecccCCC
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQDLPGALD-DAAVTEALELHKI--KNRQWAIFKTSAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~ 164 (182)
+........ ..+...+.. .+.|. ++|+||+|+..+.. .++..+.+..... ...+.+++.+||+++-
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 976543221 122222222 35664 55999999974322 2333333332111 2245679999999874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=100.25 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=75.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc---h-------hhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---Y-------WRC 80 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~~~ 80 (182)
...++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||..+... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 6779999999999999999999998765432 2233444444556788999999999665421 1 112
Q ss_pred ccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 81 YFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 81 ~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
++. ..|++++|..++....-......+..+....+ .-..++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 232 57888888766543211121233333322211 112579999999998644
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=117.58 Aligned_cols=142 Identities=21% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCHHHHHHHHhcCCCccc-----ccccceeEEEEEE----------------cCeEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 28 AGKTTILYRLQMGEVVST-----IPTIGFNVETVQY----------------NNIKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 28 ~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
++||||+.++.+...... .+.+|......+. .-..+.||||||++.+..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999987766542 2233333333221 1123899999999999888888888899
Q ss_pred eEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------HHHHHHHh------
Q 030149 87 AIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------DAAVTEAL------ 143 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~~~~~~~~------ 143 (182)
++++|+|+++. +++..+ . .+.. .+.|+++++||+|+..... .+.....+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999863 222222 2 2222 3689999999999853211 01111111
Q ss_pred -----cccc----------ccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 144 -----ELHK----------IKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 144 -----~~~~----------~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.... ......+++++||++|+|+++|...|....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1110 012467899999999999999998886543
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=119.51 Aligned_cols=113 Identities=18% Similarity=0.069 Sum_probs=79.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC---------------CCcc----cccccceeEE----EEEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG---------------EVVS----TIPTIGFNVE----TVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~~~D~~g~ 71 (182)
.+..||+++|+.++|||||+++|+.. ++.. +..|+..... .+.+.+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999642 1111 1224433222 24457889999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.++.......++.+|++++|+|+....... ....+.... ..+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHH----HcCCCEEEEEEChhccc
Confidence 998888888899999999999987642211 122222222 23578889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=105.36 Aligned_cols=155 Identities=21% Similarity=0.101 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+-.|+...|||||+..+.+..... ..-|++..+......+..+.|+|.||++++-......+...|+.++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 57889999999999999998765432 344666666666778889999999999999888888888999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++.- .........++.... ....++|+||+|..++...++..+....... ....++|.+|+.+|+||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 995432 222233333334332 4557999999999876544444443332222 45667899999999999999999
Q ss_pred HHHHHh
Q 030149 173 LSNTLK 178 (182)
Q Consensus 173 l~~~~~ 178 (182)
|.+...
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998874
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=114.88 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=78.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------cc-------cccceeEEEEEE----cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------TI-------PTIGFNVETVQY----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------~~-------~t~~~~~~~~~~----~~~~~~~~D~~g~ 71 (182)
.+..+|+++|+.++|||||+++++...-.. +. -|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456799999999999999999997422110 00 122223233333 4678999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.......++.+|++|+|+|+...-.. .....+..... .+.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988888889999999999998765321 12233333322 246789999999975
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-14 Score=98.85 Aligned_cols=117 Identities=10% Similarity=0.101 Sum_probs=73.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchh-------hhcc-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW-------RCYF- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~- 82 (182)
...++|+++|.+|+||||++|++++...... .+ +...........+.++.++||||..+..... ..++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 5779999999999999999999998765332 12 2222233344578999999999966542211 1111
Q ss_pred -CCCCeEEEEEeCCCc--chH-HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 83 -PNTQAIIYVVDSSDT--ERL-VIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 83 -~~~d~ii~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
...|+++||.+.+.. ... ..+.+.+...+.. ....+.|+++|++|...+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccCCC
Confidence 258999999665432 211 1222333333321 123578999999997643
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=102.41 Aligned_cols=135 Identities=22% Similarity=0.362 Sum_probs=101.3
Q ss_pred cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc----------hHHHHHHHHHHHHhhc
Q 030149 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE----------RLVIAKDEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (182)
+.||.|.....+.+++..+.++|++||..-+..|..++.+++++|+|++.++-+ .+.+....+..+.+..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 356888999999999999999999999999999999999999999999987632 4456667778888888
Q ss_pred ccCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhccc----cc-cCCccEEEEecccCCCChHHHHHH
Q 030149 115 ELRGAVVLIFANKQDLPGA-----------------LDDAAVTEALELH----KI-KNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 115 ~~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~~----~~-~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
.-.+.++|+++||.|+.++ ...++....+..+ .. ..+.+-+-.+.|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8888999999999998542 1112222211111 11 113444666688888999999999
Q ss_pred HHHHHhh
Q 030149 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9887754
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=93.42 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~ 137 (182)
+....++++.|..-...... .-+|.+|.|+|+.+.+.... .....+ ...-++++||+|+.+. .+.+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHH
Confidence 34667888888432222211 12588999999977654211 111111 1234899999999752 3344
Q ss_pred HHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 138 AVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+.+..... .+..+++++|+++|+|++++++++.+.+.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444332 34677999999999999999999987653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=114.89 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=79.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------c-------ccccceeEEEEEEc----------CeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------T-------IPTIGFNVETVQYN----------NIKFQV 65 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------~-------~~t~~~~~~~~~~~----------~~~~~~ 65 (182)
.+..||+++|+.++|||||+++|+...-.. + .-|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 566799999999999999999997532110 0 01222222233333 577999
Q ss_pred EEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 66 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+||||+.++.......++.+|++|+|+|+.+.-... ....+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888899999999999997753222 2233333332 468999999999986
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=116.00 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc------------cc-------ccccceeEEEEEE----------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV------------ST-------IPTIGFNVETVQY---------------- 58 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~------------~~-------~~t~~~~~~~~~~---------------- 58 (182)
+.+..||+|+|+.++|||||+++|+...-. .+ .-|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 367789999999999999999999743311 00 1122222223333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+..++++||||+.+|.......++.+|++|+|+|+...-... ....|..... .+.|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2678899999999999888888899999999999997653211 2233333333 478999999999986
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=104.15 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=103.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcC--------------------C--Ccc------------cccccceeEEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMG--------------------E--VVS------------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~--------------------~--~~~------------~~~t~~~~~~~~~~ 58 (182)
.+...++++|+|+..+|||||+.+++.. + +.. +.-|+......++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3456799999999999999999998621 1 100 01122222333333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH--HHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV--IAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
....+.+.|+||+.+|...+......+|+.++|+|++... .|+ ........+++.++ -..++|++||.|+.+.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 6678999999999999988888888999999999987532 222 11233344444443 4678999999999876
Q ss_pred CCH--HHHHH----Hh-ccccccCCccEEEEecccCCCChHHH
Q 030149 134 LDD--AAVTE----AL-ELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 134 ~~~--~~~~~----~~-~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
... +++.. .+ ....+....+.|++||+.+|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 322 22222 22 23345556667999999999987543
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=107.34 Aligned_cols=159 Identities=21% Similarity=0.148 Sum_probs=107.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----cccccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQ----------------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (182)
-+.+-|+|+|+..+|||-|+..+.+..... ....+|.++.... +.--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 467889999999999999999997644322 2334444444332 2334689999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC-----CCCH------------
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG-----ALDD------------ 136 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-----~~~~------------ 136 (182)
|-+++......||..|+|+|+.+.- ......-++.+..++.|+|+.+||+|..- +...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGl-----epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGL-----EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccC-----CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999999996641 11111222334447899999999999631 1000
Q ss_pred -HHHHHH-------hcccc------cc----CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 137 -AAVTEA-------LELHK------IK----NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 137 -~~~~~~-------~~~~~------~~----~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.++... ++.+. .+ ...++++++||.+|+||.+|+-+|.++..
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111111 11110 01 12567999999999999999999887654
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=98.37 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=96.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---ccc-------ccceeEEEEEE---------cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIP-------TIGFNVETVQY---------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~-------t~~~~~~~~~~---------~~~~~~~~D~~g~~~~~ 75 (182)
+-.+|+.++|+..||||||.+++..-.... ..| |.+...-.+.. ....+.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345899999999999999999996422111 111 22211111111 34678999999998766
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHH-HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HHHHHHhcc--ccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLV-IAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AAVTEALEL--HKI 148 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~~~~~~~~--~~~ 148 (182)
.......+-.|..++|+|+.....-. ...-.+.++ .....++|+||+|...+... ++..+..+. ...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 55555556679999999986542111 111111222 23556888899987544222 222222211 111
Q ss_pred c-CCccEEEEecccCC----CChHHHHHHHHHHHhh
Q 030149 149 K-NRQWAIFKTSAIKG----EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~-~~~~~~~~~S~~~~----~gi~~l~~~l~~~~~~ 179 (182)
. ..+.|++++|+..| +++.||.+.|.+++..
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 13578999999999 7888888888777643
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=93.86 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=88.8
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc--c-----------c----ccccceeEEEE-----------------
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVV--S-----------T----IPTIGFNVETV----------------- 56 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~-----------~----~~t~~~~~~~~----------------- 56 (182)
...+.....|+++|+.|+|||||+++++..... . . ....+.....+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345567899999999999999999999643100 0 0 00000000000
Q ss_pred ---EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 57 ---QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 57 ---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
...+..+.+++|.|.-... ..+....+..+.++|+.+.+.... . ... ....|.++++||+|+.+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHcccc
Confidence 0013477888888821101 111123456677888865542111 0 111 124678999999999753
Q ss_pred CC--HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 134 LD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.. ..+..+.+.. ..+..+++++||++|+|++++++++.+..
T Consensus 164 ~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 22 2333333322 23457899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-13 Score=93.04 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=101.5
Q ss_pred HHhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcC-----C-C-----ccccc-ccc-----------------eeEEE
Q 030149 7 RLFSSLFG--NKEARILVLGLDNAGKTTILYRLQMG-----E-V-----VSTIP-TIG-----------------FNVET 55 (182)
Q Consensus 7 ~~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~-----~-~-----~~~~~-t~~-----------------~~~~~ 55 (182)
.++..+.+ .+...|.|.|.||+|||||+..|... . . .+.+| |-| .-..+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 34444443 56789999999999999999998521 1 0 01111 111 00000
Q ss_pred E--------------------EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc
Q 030149 56 V--------------------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 56 ~--------------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (182)
+ +-.++.+.|++|.|--.-.. ....-+|.++++.-+.-.+....++.-+.++..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--- 192 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--- 192 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence 0 01356899999998433221 234468999999988777777776666655543
Q ss_pred cCCCeEEEEeecCCCCCCC-CHHHHHHHhcccc--ccC--CccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 116 LRGAVVLIFANKQDLPGAL-DDAAVTEALELHK--IKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+||.|..... ...++...+.... ... ...|++.+||.+|+|+++|++.+.+....
T Consensus 193 ------i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 193 ------IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ------eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9999999964321 1233333333322 222 34469999999999999999999887654
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-14 Score=97.57 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=103.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc------cccc--cee--------------EEEE----EE------cCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTI--GFN--------------VETV----QY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~------~~t~--~~~--------------~~~~----~~------~~~~ 62 (182)
+..+||.++|+...|||||..++.+-..... .-|+ |+. .... .. --.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976432210 0011 000 0000 00 0147
Q ss_pred EEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HH
Q 030149 63 FQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AA 138 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~ 138 (182)
+.|+|.||++-..+.+.+-..--|+.++|+.++.+.........+..+ +.. .-+.++++-||+|+...... ++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999877666655555569999999998865544444333322 221 23679999999999854222 11
Q ss_pred HHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+.+...- --..+.|++++||..+.|++.|++.|.+.+..
T Consensus 165 Ik~FvkG--t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKG--TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhcc--cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 1111111 11246789999999999999999999887653
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=93.51 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAV 139 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 139 (182)
+..+.|+||+|..... ......+|.++++.+.... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 6789999999854221 2345667888888654322 3333222222 25778999999999754322211
Q ss_pred HHH----hcccccc--CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 140 TEA----LELHKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 140 ~~~----~~~~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... +...... ....+++++||++++|++++++++.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 1111111 12235999999999999999999988754
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-14 Score=99.74 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=89.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCCc--cccccc---------------------ceeEEEEE--------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTI---------------------GFNVETVQ-------- 57 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~~--~~~~t~---------------------~~~~~~~~-------- 57 (182)
.+...|.|.|+||+|||||++.+.. .+.. ...|+. +.-...+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4678999999999999999999852 1110 011111 11111111
Q ss_pred ------------EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 58 ------------YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 58 ------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
..++.+.+++|.|--.-. .....-+|.+++|+.+.-.+.....+.-+.++. -++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEE
Confidence 035789999999843222 223557899999999877776666665555553 39999
Q ss_pred ecCCCCCCCC-HHHHHHHhccccccC--CccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 126 NKQDLPGALD-DAAVTEALELHKIKN--RQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 126 nK~Dl~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
||+|...... ..++...+....... ...|++.+||.++.|+++|++.|.+...
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999643211 133333333222122 2457999999999999999999987654
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=96.77 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=85.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh--cCCC----------cc-------------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ--MGEV----------VS-------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~--~~~~----------~~-------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.++..-+|+-+|.+|||||-+.++ ++-+ .. ..-++......++|.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456678999999999999999985 1110 00 1113335567788899999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
|+++|..-....+.-+|..++|+|+... +.....++++....++.||+-++||.|...
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 9999988888888889999999998554 333334444555558999999999999754
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=95.95 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-----------------CeEEEEEEcCCCCC-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTS- 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 73 (182)
...++|+++|.|++|||||+|++.+..... ...|...+...+.+. ...+.++||||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 566899999999999999999998766432 222555565555553 23589999999432
Q ss_pred ------CcchhhhccCCCCeEEEEEeCC
Q 030149 74 ------IRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122334578899999999973
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-13 Score=97.39 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=80.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhc-----c
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY-----F 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (182)
..+++|+|+|.+|+|||||||++.+-.... ..+ ....+.....| .-..+.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 577999999999999999999997532211 111 11122222222 33569999999964333333333 4
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC---------CCCCCHHHH----HHHhcc--cc
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL---------PGALDDAAV----TEALEL--HK 147 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl---------~~~~~~~~~----~~~~~~--~~ 147 (182)
...|.+|++.+. .|....-++...+.. .++|+.+|-||+|. +.....++. ++.... ..
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 567988877663 233344444444333 57999999999995 111122222 211111 11
Q ss_pred ccCCccEEEEecccCCC--ChHHHHHHHHHHHhhc
Q 030149 148 IKNRQWAIFKTSAIKGE--GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~--gi~~l~~~l~~~~~~~ 180 (182)
......++|-+|+.+-. ....|.+.|.+-++..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 12234458889987754 5778888888777654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-13 Score=103.26 Aligned_cols=116 Identities=19% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--------------Ccc-------cccccceeEEEEEEcC-eEEEEEEcCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-------TIPTIGFNVETVQYNN-IKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~--------------~~~-------~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 71 (182)
..+..||.|+|+.++|||||..+++... +.. +.-|+.....++.+.+ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4678899999999999999999996321 110 1114445555677785 99999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
-+|.......++-+|+.+.|+|+...-.. .....|.+..+ -++|.++++||+|.....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence 99999999999999999999999765321 22344555544 489999999999987653
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=89.33 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=109.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCC----Ce
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT----QA 87 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~ 87 (182)
..-+|+|+|+.++||||||.++.+.+........++.+-.+.- +..++.+|-.-|+.....+....+... ..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4578999999999999999999877744444444444444433 336789999999887777776555433 56
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc----------------------------------------------------
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE---------------------------------------------------- 115 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------------------------- 115 (182)
+|++.|+++|+.+-...+.|..++..+.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 7889999999665444333322222100
Q ss_pred ---------cCCCeEEEEeecCCCCC-----CCCHHHHHHHhcc---ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 116 ---------LRGAVVLIFANKQDLPG-----ALDDAAVTEALEL---HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 116 ---------~~~~~iivv~nK~Dl~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+.+.|+++|+||||... .+..++-...++. .+....+...+.+|++...|++-+..+|..+..
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 00478999999999832 1122222222222 233345778999999999999999999988765
Q ss_pred h
Q 030149 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
.
T Consensus 291 G 291 (473)
T KOG3905|consen 291 G 291 (473)
T ss_pred C
Confidence 3
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=92.22 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------------------------------------cccccceeEEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------------------------------------TIPTIGFNVETVQY 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~ 58 (182)
...++.+-+|...-||||||-+|+.+.... ..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999997432211 01133333333333
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-- 136 (182)
.+.+|.+-||||++.+-..+..-...||+.|+++|+.. ..-....-...+...++ -..+++.+||+||.+-.+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 78899999999999988887777888999999999943 33333333333333332 3678999999999854221
Q ss_pred HHHHHHhccc--cccCCccEEEEecccCCCChH
Q 030149 137 AAVTEALELH--KIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+.+...+... ........++++||+.|.|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2222222111 111223469999999999874
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=85.38 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCC----CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 61 IKFQVWDLGGQT----SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 61 ~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
..+.++||||.. .....+..+++.+|++|+|.++....+-.... .+.+.... .....++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 368999999953 23356778889999999999998865544332 33333222 345589999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=91.51 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----------cccceeEEEEEE--c--CeEEEEEEcCCCCCCcc---hh
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP---YW 78 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~---~~ 78 (182)
.++|+|+|.+|+|||||+|+|++....... ++.......... + ...+.++||||..+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999876543321 122222222222 2 35789999999332111 00
Q ss_pred ------------------------hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 79 ------------------------RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 79 ------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
...=..+|+++|+++++...--+.....+..+- ..+++|-|+.|+|...+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccCHH
Confidence 000124699999999865321122223333332 358899999999986543
Q ss_pred CH
Q 030149 135 DD 136 (182)
Q Consensus 135 ~~ 136 (182)
+.
T Consensus 159 el 160 (281)
T PF00735_consen 159 EL 160 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-13 Score=83.19 Aligned_cols=113 Identities=17% Similarity=0.091 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cc-cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|+++|+.|+|||+|+.++....+.. +. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999997666643 22 3333 3333445677889999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
..++++.. |...+.. ....+.|.++++||.|+.+.. .+.+. ....++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~-~~k~dl~~~~~~nk~dl~~~~---~~~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLV-GNKSDLPILVGGNRDVLEEER---QVATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHh-cCCCCCcEEEEeechhhHhhC---cCCHH--------HHHHHHHHhCCCcchhh
Confidence 98887655 5444433 233568899999999974321 11111 11236789999999885
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-12 Score=93.35 Aligned_cols=130 Identities=25% Similarity=0.368 Sum_probs=95.3
Q ss_pred ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhccc
Q 030149 48 TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
|.|+....+.+ +...+.++|++|+...+..|..++.+++++|||+++++- ..+.+....+..+.+....
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 55677778888 999999999999999999999999999999999997542 3467777888888888777
Q ss_pred CCCeEEEEeecCCCCC------C--------------CCHHHHHHHhccc----cccC---CccEEEEecccCCCChHHH
Q 030149 117 RGAVVLIFANKQDLPG------A--------------LDDAAVTEALELH----KIKN---RQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~------~--------------~~~~~~~~~~~~~----~~~~---~~~~~~~~S~~~~~gi~~l 169 (182)
.+.|+++++||.|+.+ + .+.+.....+... .... ..+.+..++|.+.+.+..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999621 1 1222222222211 1111 3445678889988899999
Q ss_pred HHHHHHHH
Q 030149 170 LDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~~ 177 (182)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 98887653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-13 Score=88.75 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=97.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcc-----hhhhccCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 85 (182)
...||+++|.+||||||+-..+..+- .....+|+++....+.+ +..-+.+||++|++.+-. .....++++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35689999999999999988776443 23356677777777777 668999999999985422 234557889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---ccccCCccEEEEecc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALEL---HKIKNRQWAIFKTSA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S~ 160 (182)
++++++||+...+-..+. ..++..++. ...+...++..++|.|+...+..+.+.+.... ...+...+.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999776533332 222222221 22356779999999999877666555443322 112233455788776
Q ss_pred cCC
Q 030149 161 IKG 163 (182)
Q Consensus 161 ~~~ 163 (182)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 654
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=89.57 Aligned_cols=95 Identities=21% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHHHhcccccc
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIK 149 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (182)
+++..+...+++++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 455666777899999999999999887 88888887765432 579999999999996432211 111222 2
Q ss_pred CCccEEEEecccCCCChHHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
..+.+++++||++|+|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-13 Score=93.19 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=101.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCC---------CCcchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT---------SIRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~---------~~~~~~~~~ 81 (182)
....-|.|+|-+++|||||++++.+....+ ...|.+.+...... .+..+.+.||.|.- .|.. ....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 455789999999999999999998554433 45577776666666 56778889999932 1222 2234
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe----EEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV----VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+|.++.|.|+++|+- +....-....++...-+..| ++=|-||+|..+..... +..+ .+.
T Consensus 255 VaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-----------E~n~--~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-----------EKNL--DVG 320 (410)
T ss_pred HhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----------ccCC--ccc
Confidence 677999999999999974 33333344444443333333 56677777764331111 1111 688
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|++++.+.+-..+..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 9999999999999988777653
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=90.06 Aligned_cols=59 Identities=31% Similarity=0.395 Sum_probs=41.8
Q ss_pred CCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 118 GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
..+.++++||+|+.+.. ..++...........+..+++++|+++|+|++++.++|.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999997521 122333333333344677899999999999999999998753
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-12 Score=90.83 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC---
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 74 (182)
++|+++|.|++|||||+|++.+..... ...|...+...+.+.+ ..+.++|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 2335555555555533 25899999994321
Q ss_pred ----cchhhhccCCCCeEEEEEeCC
Q 030149 75 ----RPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 75 ----~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334578899999999984
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=91.09 Aligned_cols=163 Identities=19% Similarity=0.202 Sum_probs=103.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc--eeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCC----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~--~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
....+|+|+|..++|||||+.+|.+..- +.++.+ +.+..+.- +..++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 3557999999999999999999976543 334444 44433322 22578999999877777776655543
Q ss_pred CCeEEEEEeCCCcchHH-HHHHHHH----------------------------HHHhh---c--c---------------
Q 030149 85 TQAIIYVVDSSDTERLV-IAKDEFH----------------------------AILEE---E--E--------------- 115 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~-~~~~~~~----------------------------~~~~~---~--~--------------- 115 (182)
--++|+|+|.+.|+.+- .+..|+. .+.+- . .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 25688899999987543 2222221 10000 0 0
Q ss_pred -------------cCCCeEEEEeecCCCCCCC-----CHHHHHHHh---ccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 116 -------------LRGAVVLIFANKQDLPGAL-----DDAAVTEAL---ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 116 -------------~~~~~iivv~nK~Dl~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+-+.|++||++|+|..... -.++....+ -.......+...+.+|++...+++.|..+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0036999999999964211 111211111 1223344678899999999999999999998
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
..+..
T Consensus 261 h~l~~ 265 (472)
T PF05783_consen 261 HRLYG 265 (472)
T ss_pred HHhcc
Confidence 88754
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=94.49 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=73.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccc----cccceeEEEEEEcCeEEEEEEcCCCCCCcc-------h---hhhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI----PTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------Y---WRCY 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~---~~~~ 81 (182)
..++|+++|.+|+||||++|++++....... .|...........+..+.++||||..+... + ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4579999999999999999999987643321 233332223344788999999999654311 1 1123
Q ss_pred cC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 82 FP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
+. .+|++|+|..++...........+..+....+ ..-...|||.|+.|..++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33 47999999887533322122233333322211 113568999999998764
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=80.58 Aligned_cols=144 Identities=21% Similarity=0.207 Sum_probs=85.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC---CCcc-------c---------c-c---ccceeEE-----E--E----------
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG---EVVS-------T---------I-P---TIGFNVE-----T--V---------- 56 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~---~~~~-------~---------~-~---t~~~~~~-----~--~---------- 56 (182)
-+.|.|.|++|||||+|+.+++.. ++.. + . + ..+.+.. . +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 379999999999999999997531 1110 0 0 0 0011100 0 0
Q ss_pred EEcCeEEEEEEcCCCCCCcchhhhccCCCC-eEEEEEeCCCcchHHHHHHHHHHHHh-hcccCCCeEEEEeecCCCCCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKDEFHAILE-EEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
.+.+..+.|++..|.- .......-.| .-|+|+|+...+-.. .+ ++... ..-++|+||.|+.+-.
T Consensus 93 ~~~~~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYV 158 (202)
T ss_pred cCCcCCEEEEecCcce----ecccCcchhhceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHh
Confidence 0012466777777611 1111122234 889999997764210 01 11111 2569999999996532
Q ss_pred --CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 135 --DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+.+...+...+ -.+..+++.+|+++|+|++++++++...+
T Consensus 159 ~~dlevm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33555444443 34677899999999999999999987654
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=81.89 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=70.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc-------c--eeE--------------------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI-------G--FNV-------------------------- 53 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~-------~--~~~-------------------------- 53 (182)
.-..++|+|+.|+||||+++++.+..+.. ..|+. . ...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999998764221 11100 0 000
Q ss_pred ----------EEEEE---cCeEEEEEEcCCCCCC-------------cchhhhccCC-CCeEEEEEeCCCcchHHHHHHH
Q 030149 54 ----------ETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPN-TQAIIYVVDSSDTERLVIAKDE 106 (182)
Q Consensus 54 ----------~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~ 106 (182)
..++. ....+.++||||.... ..+...++++ .+++++|+|+...-.-....
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-- 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-- 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH--
Confidence 00111 1257899999996421 2244566774 46889999885532211211
Q ss_pred HHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 107 FHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
.+.+.......|+++|+||+|..++
T Consensus 183 --~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 --KLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred --HHHHHHHHcCCcEEEEEECCCCCCc
Confidence 2223333357899999999999765
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=87.79 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=76.5
Q ss_pred eEEEEEEcCCC-------------CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 61 IKFQVWDLGGQ-------------TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.++.++|.||. +....+...++.+.++||+|+. ..|.+..+....++..+..+.+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---DGSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---DGSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---cCCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 58999999992 2345577889999999999997 3344555556666666666678899999999
Q ss_pred CCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 128 QDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 128 ~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|+.+. .+++.+.+.+.-+.+-...+.||.+-.-.|.
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn 527 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN 527 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC
Confidence 999765 5678888888766666667778888766554
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=86.19 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=100.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc----eeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..++.+++.|+|+.++|||.+++++.++.+.. +..+.. .+...+......+.+.|.+-. ....+.... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 44678999999999999999999999977665 222222 333333334556667777654 222222222 67999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-----CHHHHHHHhccccccCCccEEEEecccC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-----DDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.++||.+++.+|............. ...|+++|.+|+|+.+.. .++++...+. ... -...|+..
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~----i~~---P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG----LPP---PIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC----CCC---CeeeccCC
Confidence 99999999999998888766665443 579999999999996432 2222222221 111 34455553
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
... .++|..|..+..
T Consensus 569 ~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQ 583 (625)
T ss_pred CCC-chHHHHHHHhhh
Confidence 222 788888887653
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=81.57 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=93.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC-------CC---cc--ccc-----ccceeEEEEEE--cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG-------EV---VS--TIP-----TIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~-------~~---~~--~~~-----t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....||..+|+.+.|||||..++..- .. .. ..| .+.++...+.| .+..+-.+|+||+.++-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 56799999999999999998887421 11 11 111 22233344444 67889999999999887
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCC-eEEEEeecCCCCCCCCH-----HHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA-VVLIFANKQDLPGALDD-----AAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 149 (182)
........+.|..|+|+.+.+... ...+..+.-. ++ -.. .+++++||+|+.++.+. .++.+.+.+..+.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLla-rq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhh-hh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 777766777899999999876431 1111111111 11 134 68999999999874333 3334444445555
Q ss_pred CCccEEEEecccC
Q 030149 150 NRQWAIFKTSAIK 162 (182)
Q Consensus 150 ~~~~~~~~~S~~~ 162 (182)
....|++.-|++.
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 5677888888865
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-11 Score=91.28 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc----------cc------cccee----EEEEEE-----cCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----------IP------TIGFN----VETVQY-----NNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~------t~~~~----~~~~~~-----~~~~~~~~D~~ 69 (182)
....+|+++|+-++|||+|+..+........ .. ..++. ..++-. ..+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 5668999999999999999999976543221 11 11111 112211 34678999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
|+-.|.......++.+|++++++|+.+.-++... .++++....+.|+++|+||+|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-----r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-----RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-----HHHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999877554332 2333333357999999999996
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=80.82 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEE------------------cCeEEEEEEcCC-----
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY------------------NNIKFQVWDLGG----- 70 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (182)
.++++++|-|++|||||.|++....... ..| |+..+...+.. -...+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998766332 333 66655555443 124689999998
Q ss_pred --CCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 71 --QTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+.....++.+|+++.|+|...
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34556666677899999999999764
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=77.92 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcch---hhhccCCCCeEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY---WRCYFPNTQAII 89 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii 89 (182)
+.+|+++|...|||||+..-...+-.+. ..+|...+..++...-..+.+||.||+-.+... ....++.+-++|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3569999999999999987665332211 334555555555556688999999998765443 244578899999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHh--hcccCCCeEEEEeecCCCCCCCCH-HHH-------HHHhccccccCCccEEEEec
Q 030149 90 YVVDSSDTERLVIAKDEFHAILE--EEELRGAVVLIFANKQDLPGALDD-AAV-------TEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~iivv~nK~Dl~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~S 159 (182)
+|+|+.+. +.+....+..... +..+++..+-+.++|.|...++.. +.. .+.+........++.|+-+|
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99998543 2222222222222 355678889999999997654322 111 12222233344566788888
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 030149 160 AIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~ 178 (182)
..+.. |-|.|..+.+.+-
T Consensus 185 IyDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 185 IYDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred ecchH-HHHHHHHHHHHHh
Confidence 87764 7777776666553
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=80.95 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred HhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhcC----CCc-------------c--cc---cccceeE---EEEEE--
Q 030149 8 LFSSLFG--NKEARILVLGLDNAGKTTILYRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-- 58 (182)
Q Consensus 8 ~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~~----~~~-------------~--~~---~t~~~~~---~~~~~-- 58 (182)
+|.+... .-.+-|+|+|+.++|||||+++|.+. ... + .. .|....+ ..+..
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 4444432 56789999999999999999999876 322 1 11 1222222 22222
Q ss_pred ---cCeEEEEEEcCCCCC--------Ccc------h---------------hhhccC-CCCeEEEEE-eCC----CcchH
Q 030149 59 ---NNIKFQVWDLGGQTS--------IRP------Y---------------WRCYFP-NTQAIIYVV-DSS----DTERL 100 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~--------~~~------~---------------~~~~~~-~~d~ii~v~-d~~----~~~s~ 100 (182)
-..+++++||+|... ... . ....+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 247899999999221 111 0 223345 789999988 763 11222
Q ss_pred H-HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC--ChHHHHHHH
Q 030149 101 V-IAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE--GLFEGLDWL 173 (182)
Q Consensus 101 ~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~--gi~~l~~~l 173 (182)
. .-..++..+.. .++|+++++||.|-..+. .....+.+.. ..+.+++.+|+..-. .|..+++.+
T Consensus 166 ~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~e----ky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 166 VEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELEE----KYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHHH----HhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 2 22344444433 589999999999943222 2333333321 123567777775533 344444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=77.34 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
...++++++|.||+|||||+|++.+.......+..|.+.....+ .+..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 34589999999999999999999988776655555544432222 235789999999
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-11 Score=83.07 Aligned_cols=76 Identities=25% Similarity=0.248 Sum_probs=54.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCe-----------------EEEEEEcCCCCCC-----
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-----------------KFQVWDLGGQTSI----- 74 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~~----- 74 (182)
|+++|.|++|||||+|++.+.+... ...|...+...+.+.+. .+.++|+||-..-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877532 23355666666555443 4999999994321
Q ss_pred --cchhhhccCCCCeEEEEEeCC
Q 030149 75 --RPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 75 --~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112334467899999999873
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=75.09 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=64.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--ccc-ccccceeEEEEEEcCeEEEEEEcCCCCC-------CcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VST-IPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 84 (182)
.-.-+|+++|-|.+|||||+..+..... ..| ..|..+....+.+++..+++.|.||.-+ .........+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3458999999999999999999975443 223 3466677888899999999999999422 12334455678
Q ss_pred CCeEEEEEeCCCcc
Q 030149 85 TQAIIYVVDSSDTE 98 (182)
Q Consensus 85 ~d~ii~v~d~~~~~ 98 (182)
+|.+++|.|++..+
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 99999999997743
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=78.89 Aligned_cols=98 Identities=19% Similarity=0.110 Sum_probs=63.9
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHh---cccccc
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~---~~~~~~ 149 (182)
+...+..+++.+|++++|+|+.++..- +...+... ..+.|+++|+||+|+...... ....... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 567778889999999999999876421 11111111 246899999999999644322 2222111 001111
Q ss_pred CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
....+++++||++|+|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11124899999999999999999988764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=74.76 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
+..+|+++|.+|+|||||+|++.+.......++.+.+.....+ .+..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 5688999999999999999999988776666666654443333 234589999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=76.17 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=61.9
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.+.....+++|++++|+|+.++..... ..+..... ..++|+++|+||+|+.......... ... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3455666778999999999987643221 11222222 2368999999999986321111111 111 123456
Q ss_pred EEEecccCCCChHHHHHHHHHHHhh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++++||+++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-10 Score=79.21 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=77.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEc-------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN------------------------------- 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~------------------------------- 59 (182)
....-|+++|.-..||||+|+.++..++.. ..||...-...+...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 456789999999999999999999888765 344444222211110
Q ss_pred ----------CeEEEEEEcCCCCCCc-----------chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC
Q 030149 60 ----------NIKFQVWDLGGQTSIR-----------PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG 118 (182)
Q Consensus 60 ----------~~~~~~~D~~g~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
-..+.++||||.-+.+ ....=+...+|.|+++||+...+--++....+..+ ....
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCc
Confidence 0278999999943322 22333457899999999987655334444444333 3346
Q ss_pred CeEEEEeecCCCCCC
Q 030149 119 AVVLIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~Dl~~~ 133 (182)
-.+-+|+||.|.+++
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 678899999999854
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=77.32 Aligned_cols=138 Identities=18% Similarity=0.297 Sum_probs=79.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----------cccccceeEEEEEE--c--CeEEEEEEcCCCCCCcc-
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-----------TIPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP- 76 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~- 76 (182)
...-.++|+++|+.|+|||||+|+|++..... ..++.......... + ..++.++||||..++..
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 33678999999999999999999998763322 12333333333333 2 36789999999332211
Q ss_pred --hhh-----------hc------------c--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 77 --YWR-----------CY------------F--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 77 --~~~-----------~~------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
.|. .| + ..+|+++|.+.++...--.-....+..+. ..+.+|-|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-----KRVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-----cccCeeeeeeccc
Confidence 110 01 1 24699999999764321111122333332 3577899999999
Q ss_pred CCCCCCHHHHHHHhccccccCCccEEE
Q 030149 130 LPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..-..+...+.+...+. ....++++|
T Consensus 174 ~lT~~El~~~K~~I~~~-i~~~nI~vf 199 (373)
T COG5019 174 TLTDDELAEFKERIRED-LEQYNIPVF 199 (373)
T ss_pred cCCHHHHHHHHHHHHHH-HHHhCCcee
Confidence 87544444443333221 223345555
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=79.79 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=61.6
Q ss_pred hhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ....+..++.... ..+.|+++|+||+|+..+.......+.+ ...+++++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 34578999999999998775 3334445554432 2479999999999997432222222222 233567999
Q ss_pred ecccCCCChHHHHHHHHHH
Q 030149 158 TSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~ 176 (182)
+||+++.|+++|++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=76.56 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccc----------ccccceeEEEEEE--c--CeEEEEEEcCCCCCCcc---
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----------IPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP--- 76 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~--- 76 (182)
+.-.++++++|++|.|||||+|+|+...+... ..|..+....... + ..++.++||||..+...
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987644321 1133333334433 2 36788999999322111
Q ss_pred ----------------------hhhhccC--CCCeEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 77 ----------------------YWRCYFP--NTQAIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 77 ----------------------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+....+. .+|+++|.+.+.... +..+. ..+..+ ...+.+|-|+-|+|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-----~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-----SKKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-----hccccccceeeccccC
Confidence 0011222 579999999976432 12221 222222 1468899999999987
Q ss_pred CCCCH
Q 030149 132 GALDD 136 (182)
Q Consensus 132 ~~~~~ 136 (182)
.+.+.
T Consensus 172 T~~El 176 (366)
T KOG2655|consen 172 TKDEL 176 (366)
T ss_pred CHHHH
Confidence 54333
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-10 Score=80.43 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=96.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c----------------ccccceeEEEEEE------------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-T----------------IPTIGFNVETVQY------------------ 58 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~----------------~~t~~~~~~~~~~------------------ 58 (182)
.+..+.|+++|+.+.|||||+-.+.-+.... . .-+......-+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3677999999999999999998886433211 0 1111121111111
Q ss_pred -----cCeEEEEEEcCCCCCCcchh--hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 -----NNIKFQVWDLGGQTSIRPYW--RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+.-+.|+||.|++.+.... ...-++.|..++++.+++.-+ ...+...-+ ......|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi---~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGI---ALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhh---hhhhcCCEEEEEEecccC
Confidence 23468999999999876543 344567899999999977632 122222222 222478999999999997
Q ss_pred CCCCHHHHHH----Hhcc--------------------ccccCCccEEEEecccCCCChHHHHHHH
Q 030149 132 GALDDAAVTE----ALEL--------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 132 ~~~~~~~~~~----~~~~--------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
.++....+.+ .+.. ......-.|+|.+|+.+|+|++-|.+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 6533322222 2111 0111124689999999999987655443
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-10 Score=76.83 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=92.5
Q ss_pred cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC----------CCcchHHHHHHHHHHHHhhc
Q 030149 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS----------SDTERLVIAKDEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~ 114 (182)
..||.|.....++.....++++|.+|+..-+..|..+++++-.+++++.. ++....++....+.-++.++
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 35566777777777888999999999998888888888887776665543 34556777888888888888
Q ss_pred ccCCCeEEEEeecCCCCCCCCH-----------------HHHHHH-----hccccccCCc-cEEEEecccCCCChHHHHH
Q 030149 115 ELRGAVVLIFANKQDLPGALDD-----------------AAVTEA-----LELHKIKNRQ-WAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 115 ~~~~~~iivv~nK~Dl~~~~~~-----------------~~~~~~-----~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~ 171 (182)
...+.++|+++||.|+.++... .+.... +......... +.--.+.|.+.+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 8889999999999998654111 011111 1111000111 1122355777889999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
.+.+.+.++
T Consensus 343 aVkDtiLq~ 351 (359)
T KOG0085|consen 343 AVKDTILQL 351 (359)
T ss_pred HHHHHHHHh
Confidence 888776543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-10 Score=70.89 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~ 71 (182)
+++++|.+|+|||||+|++.+........+.+ .....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999887655333333 2233333333 6899999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-10 Score=83.72 Aligned_cols=160 Identities=12% Similarity=0.204 Sum_probs=111.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccc-eeEEE--EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVET--VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
..+|+.|+|..++|||+|+.+++.+.+.....+.+ ..... +....+-+.+.|.+|... ..+-..+|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 56999999999999999999999888887544444 22222 233567788888888433 23456789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
...+..+++...........+......|.++++++.-.......-.......+.......+.+|++.+..|.++...|+.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999988877776665555566788888887654322111111111111222345567999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+...+..+
T Consensus 184 ~~~k~i~~ 191 (749)
T KOG0705|consen 184 VAQKIVQL 191 (749)
T ss_pred HHHHHHHH
Confidence 98876543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=76.88 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=63.1
Q ss_pred hhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+..+. +...... .....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence 34477899999999999887 76776666665433 478999999999996541 1111111 11224568999
Q ss_pred ecccCCCChHHHHHHHHH
Q 030149 158 TSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~ 175 (182)
+|++++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-09 Score=69.91 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=78.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------ccccccee--EEEEEEcC--eEEEEEEcCCCCCC---cch
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSI---RPY 77 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~---~~~ 77 (182)
.-.++|+|+|.+|.|||||+|++....... +..|.... ...+.-++ .++.++||||..+. ...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 346999999999999999999997543322 11122221 12222233 46788999993322 111
Q ss_pred h-----------------------hhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 78 W-----------------------RCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------------------~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
| ...+. .+++++|.+..+...--......+..+.+ -+.++-|+-|+|..-
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 1 12222 36899999988654321111223333322 366899999999753
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
-++...+.+..... +...++.+++--+.+.
T Consensus 199 leEr~~FkqrI~~e-l~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 199 LEERSAFKQRIRKE-LEKHGIDVYPQDSFDE 228 (336)
T ss_pred HHHHHHHHHHHHHH-HHhcCccccccccccc
Confidence 33333333333322 2234455555554443
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=78.17 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..+..+++|+|-|++||||+||+|.+.......+..|.+.....+ -+..+.++||||.-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 356689999999999999999999999887777766766555444 34559999999943
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-10 Score=78.34 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEE-EEEEcCeEEEEEEcCC----------CCCCcch
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE-TVQYNNIKFQVWDLGG----------QTSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~ 77 (182)
.++..+.+.+++.|.+++|||||+|.+...+... ..++.+-+.. ....-+..+.++|.|| ..++...
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3445788999999999999999999998766543 2223332211 1112467899999999 1233444
Q ss_pred hhhccCCC---CeEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---H---HHHHHHhcc--
Q 030149 78 WRCYFPNT---QAIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---D---AAVTEALEL-- 145 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~---~~~~~~~~~-- 145 (182)
...|+.+. -.+.+.+|++-+ ...+.. ++......++|..+|.||||...... . ..+...++.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~------~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNP------EIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChH------HHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 45555433 334555665443 111111 12222335899999999999753321 0 111111111
Q ss_pred ccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 146 HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
........|++.+|+.++.|+++|.-.+...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 1112245668889999999999987665543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=69.07 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=57.9
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.++++|++++|+|+.++..- ....+...+.. ...++|+++|+||+|+.++.........+.. ......+++||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 47789999999999886321 11223333322 1235899999999999643222222222221 11223688999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
+.+.|++++.+.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=77.01 Aligned_cols=89 Identities=28% Similarity=0.231 Sum_probs=63.9
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..++|.+++|++...+.++..+..|+.... ..+.|+++|+||+|+..+.......+.... ....+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 356899999999987778888877776442 246899999999999754322222222211 12235689999999
Q ss_pred CCCChHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNT 176 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~ 176 (182)
+++|+++|++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=75.97 Aligned_cols=85 Identities=24% Similarity=0.222 Sum_probs=58.5
Q ss_pred cCCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
..++|++++|+|+.+++..... ..|+..+ .. .+.|+++|+||+|+... .+........ ....+.+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEeC
Confidence 5789999999999888765554 3444333 22 47899999999999632 2222111111 1223467999999
Q ss_pred cCCCChHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLS 174 (182)
Q Consensus 161 ~~~~gi~~l~~~l~ 174 (182)
+++.|++++++.+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998774
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=71.01 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--ccc-ccccceeEEEEEEcCeEEEEEEcCCCCC-------CcchhhhccCCCCe
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV--VST-IPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPNTQA 87 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (182)
-+|.++|-|.+||||++..+.+... ..+ ..|...-.....+.+-++++.|.||.-+ .........+.|++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 5899999999999999999986432 222 2244455556678899999999999422 22234455678999
Q ss_pred EEEEEeCCCcch
Q 030149 88 IIYVVDSSDTER 99 (182)
Q Consensus 88 ii~v~d~~~~~s 99 (182)
+++|.|+..|-+
T Consensus 140 i~~vld~~kp~~ 151 (358)
T KOG1487|consen 140 IFIVLDVLKPLS 151 (358)
T ss_pred EEEEeeccCccc
Confidence 999999876543
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=75.62 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=43.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
...++++++|.||+|||||+|++.+.+.....+..+.+.....+ -+..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence 45689999999999999999999988776655555544433222 24568999999953
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=79.54 Aligned_cols=98 Identities=26% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhcccccc
Q 030149 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 149 (182)
.+++..+...+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ..+...+..... .+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 45677777888889999999999976542 2333333222 267999999999996432 233333222111 11
Q ss_pred CCcc---EEEEecccCCCChHHHHHHHHHH
Q 030149 150 NRQW---AIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 150 ~~~~---~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
..++ .++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222 48999999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=68.54 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=42.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
....+++++|.+++||||+++++.+.....+.++.+.+.....+ .+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 35688999999999999999999987766666666655332211 345799999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-09 Score=74.98 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=41.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE--EEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 71 (182)
.+.++++++|.||+|||||+|++.+.......+..+.+... +.. +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 35689999999999999999999987765544444433322 222 246899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=76.98 Aligned_cols=145 Identities=15% Similarity=0.249 Sum_probs=83.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccce---------------------------------------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGF--------------------------------------- 51 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~--------------------------------------- 51 (182)
..+...+|++.|..++||||++|+++..+..+ ..+++.+
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34678999999999999999999998555433 1111100
Q ss_pred -----eEEEEEEc-------CeEEEEEEcCCC---CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhccc
Q 030149 52 -----NVETVQYN-------NIKFQVWDLGGQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 52 -----~~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
....+-+. .-.+.++|.||- +...........++|++|+|..+.+..+. ..+. ++.....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~--sek~---Ff~~vs~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL--SEKQ---FFHKVSE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH--HHHH---HHHHhhc
Confidence 00001111 126788899993 34445556677889999999998665332 2222 2222222
Q ss_pred CCCeEEEEeecCCCCCCC--CHHHHHHHh---ccccccCCccEEEEecccC
Q 030149 117 RGAVVLIFANKQDLPGAL--DDAAVTEAL---ELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~S~~~ 162 (182)
.+..++++-||+|..... ..+.+.+.. .-...+...-.++.+|++.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 356678888899986431 123332221 1112222344588888543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-09 Score=67.40 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=54.0
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.++.........+. ......++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCcC
Confidence 78999999988754432 22221 111224789999999999964321111111121 11234589999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++.+.+.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999887653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=70.88 Aligned_cols=84 Identities=37% Similarity=0.552 Sum_probs=64.8
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc----------chHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT----------ERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|.-..+++.+..+|..+|.+|+.+-+..|...+.++.++|+|+..+.- ..+.+....+..+.+....+
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 44555566677888999999999999999999999999999999986542 23444445556666555556
Q ss_pred CCeEEEEeecCCCC
Q 030149 118 GAVVLIFANKQDLP 131 (182)
Q Consensus 118 ~~~iivv~nK~Dl~ 131 (182)
...+|+++||.|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 78899999999974
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.9e-09 Score=68.90 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=40.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE--EEEcCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 71 (182)
...++++++|.+|+|||||+|++.+.......+..+.+... +... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 45579999999999999999999987765544333322222 2222 67899999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-10 Score=81.35 Aligned_cols=114 Identities=19% Similarity=0.134 Sum_probs=85.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CC------c---c----cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV------V---S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~------~---~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|.|+.+..+||||.-++++.- .. . . ..-|+......+++++++++++||||+-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 56789999999999999999998521 11 0 0 12244455666788999999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|.-....+++-.|+++.|||++..-.-..+ ..|. +....+.|-+.++||+|....
T Consensus 115 f~leverclrvldgavav~dasagve~qtl-tvwr----qadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWR----QADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCccccee-eeeh----hccccCCchhhhhhhhhhhhh
Confidence 999999999999999999999775322222 2233 333357899999999998654
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-09 Score=80.69 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=78.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC------------cc---cccccceeEEE--E--EEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV------------VS---TIPTIGFNVET--V--QYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~------------~~---~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~ 75 (182)
....++.++.+...|||||..++...+- .. ...+.|.+... + -.+++.++++|+||+-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 5668999999999999999999964321 11 12244444333 2 2278999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.......+-+|+.++.+|+...- ......++++....+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv-----~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGV-----CSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeecccc-----chhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999986642 111122222222235668999999993
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=66.72 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=38.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc--cccceeEEEEEEcCeEEEEEEcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI--PTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+||||++|++.+....... +........+.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence 46788999999999999999999986643322 211111222222 35799999999
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=71.08 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc-------CCCcc-----ccc-----ccceeEEEEEE--cCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM-------GEVVS-----TIP-----TIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~-------~~~~~-----~~~-----t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....||.-+|+...|||||-.++.. .++.. ..| .+.++...+.| ....+-=.|+||+.++-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 5679999999999999999888742 11111 111 33355566666 45667778999999988
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-----HHHHHHhccccccC
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-----AAVTEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
.....-...-|+.|+|+.+++... ...+..+.- .++.+ -..+++++||.|++++.+. -++++.+....+..
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLL-ArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLL-ARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHH-HHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 777766777899999999987542 222222222 22222 2568999999999854332 23344444555556
Q ss_pred CccEEEEecccC
Q 030149 151 RQWAIFKTSAIK 162 (182)
Q Consensus 151 ~~~~~~~~S~~~ 162 (182)
...|++.-||+.
T Consensus 208 d~~PvI~GSAL~ 219 (449)
T KOG0460|consen 208 DNTPVIRGSALC 219 (449)
T ss_pred CCCCeeecchhh
Confidence 678899888753
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=72.49 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-cc--c-ccccceeEEEEEEcC-----------------eEEEEEEcCCCC----
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV-VS--T-IPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~-~~--~-~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
++++++|.|++|||||.+.+.+... .. | ..|...+...+.+.+ ..+.++|.||-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988765 32 2 224566666665533 368999999943
Q ss_pred ---CCcchhhhccCCCCeEEEEEeCC
Q 030149 73 ---SIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23335556688999999999974
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=75.18 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=83.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+..+-|+|+|+||+||||||.++...-.......+.--.-.+.....++.|.++|. +..++. ....-+|.+++.+|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEecc
Confidence 45678889999999999999998743221111111100111233668899999993 323322 234568999999998
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC-CCHHHHHHHhcccccc--CCccEEEEecccC
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIK--NRQWAIFKTSAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~ 162 (182)
.-. |+-..-.+..++..++. ..++-|+|+.|+... .......+.+...++. ..+..+|..|...
T Consensus 144 nfG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 144 NFG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ccC--ceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 654 33233334444444332 336778999999643 3345555544433332 3566677777654
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=77.69 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=83.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC-----cc----------------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV-----VS----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~-----~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|.+.-+-.+||||+-++++...- .. ..-|+......+.+.+++++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 5678999999999999999999863211 00 01122333344556799999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|--.....++-.|+.++++|+...-. ......|.+..++ ++|.+.++||.|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcCC
Confidence 98888888999999999999865421 2233555555554 8999999999997654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-09 Score=69.69 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=37.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--------ccccccceeEEEEEEc-CeEEEEEEcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--------STIPTIGFNVETVQYN-NIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--------~~~~t~~~~~~~~~~~-~~~~~~~D~~g 70 (182)
+..+++++|.+|+|||||+|++.+.... ...+..+.+.....+. +..+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence 4578999999999999999999875421 2222333333333331 22689999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=65.85 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCCCCcchhhh--------ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRC--------YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.....++|+||-.+....... ..-..+.+++++|+.+....-.....+...+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356789999997654443322 2334789999999755432211112222222322 3789999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=65.19 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc----cccccceeEEEEEE---cCeEEEEEEcCCCCCCcc------hhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRP------YWR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~------~~~ 79 (182)
.+..-|.|+|++++|||+|+|.+.+. .+.. ...|.|+-...... .+..+.++||+|..+... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 55678999999999999999999988 5433 12255544444444 368999999999654322 122
Q ss_pred hccCC--CCeEEEEEeCCCcch
Q 030149 80 CYFPN--TQAIIYVVDSSDTER 99 (182)
Q Consensus 80 ~~~~~--~d~ii~v~d~~~~~s 99 (182)
..+.. ++++||..+......
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHH
Confidence 22333 799999988765543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-09 Score=75.52 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=96.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccc--eeEEEE-----------------------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVETV----------------------------- 56 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~--~~~~~~----------------------------- 56 (182)
++..+||.-+|+.-.||||++.++.+-.... ..-|+. +.-..+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3677999999999999999999997533211 000110 000000
Q ss_pred EE--c----CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QY--N----NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~--~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.. + -..+.|+|+||++-..+.+..-..--|+.++.+..+++.........+..+ +.. .-+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhh
Confidence 00 0 124688999998765554443333347777777765433222222222222 111 13668999999999
Q ss_pred CCCCCHHHHHHHhccc--cccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 131 PGALDDAAVTEALELH--KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
..+....+..+..+.. .....+.|++++||.-..|++-+.+++...++
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 8664443333332211 11235778999999999999999999988764
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=65.78 Aligned_cols=90 Identities=17% Similarity=0.058 Sum_probs=58.7
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+.++|++++|+|+.++...... .+ .... .++|+++|+||+|+.++.......+.+. .....++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~--~i---~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP--LL---EKIL--GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh--hh---HhHh--cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 345568899999999999876432211 11 1111 2578999999999964311111111111 1123589
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
.+|++++.|++++.+.+...+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=69.89 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=61.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEc-----------------CeEEEEEEcCC----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYN-----------------NIKFQVWDLGG---- 70 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g---- 70 (182)
...++++|+|.|++|||||.|++.+..... ..| |++.+...+... ...+.++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999998776544 333 777666665542 23689999998
Q ss_pred ---CCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 71 ---QTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 71 ---~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+.....++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23445556667889999999988644
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-08 Score=69.64 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=61.2
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....++.+|++++|+|+..+.+... ..+...+ .++|+++|+||+|+.++.......+.+.. .+.+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 44556889999999999977644322 2222222 26899999999999643211222222211 234689
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999998887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-08 Score=71.98 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--------------------CCc--------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG--------------------EVV--------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~--------------------~~~--------------~~~~t~~~~~~~~~~~ 59 (182)
+....+++++|+..+||||+-..+... +-. ....|.+.....+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 467899999999999999997776411 000 0122444555556667
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-C
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-D 135 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~ 135 (182)
..++.+.|+||+..+......-..++|.-++|+.+...+ .|+.--+--.+........-...|+++||+|-+... +
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 889999999999998887777788899999999884322 222111111111111122246789999999975321 1
Q ss_pred H---HHHHHH----hc-cccccCCccEEEEecccCCCChHHHH
Q 030149 136 D---AAVTEA----LE-LHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 136 ~---~~~~~~----~~-~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
. ++.... +. ..+...+..-++++|..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 122111 11 11112245569999999999988754
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=70.09 Aligned_cols=152 Identities=22% Similarity=0.188 Sum_probs=89.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCc------------------c-cccccceeEEE--------------------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVV------------------S-TIPTIGFNVET--------------------VQ 57 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~------------------~-~~~t~~~~~~~--------------------~~ 57 (182)
..+|+|+|...+|||||+--+..+... + ...+.+...-- +.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999998776532211 1 12222211111 11
Q ss_pred E---cCeEEEEEEcCCCCCCcchhhhcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 58 Y---NNIKFQVWDLGGQTSIRPYWRCYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 58 ~---~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
+ ...-+.|+|.+|++.+......-+ +-.|...+++-++.. .....+.. +.......+|+++|++|+|...
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEH---LgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEH---LGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHh---hhhhhhhcCcEEEEEEeeccCc
Confidence 1 123578999999998766554433 235777777776443 11111111 1112224799999999999875
Q ss_pred CCCHHHHHHHhc----cc---------------------cccCCccEEEEecccCCCChHHHHHHH
Q 030149 133 ALDDAAVTEALE----LH---------------------KIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 133 ~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
....++-.+.+. .. +....-+|+|.+|..+|+|++.|...|
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 433333222221 10 112346789999999999998765443
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=68.57 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=92.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----------------ccc-------cccee--EEEEEE----------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----------------TIP-------TIGFN--VETVQY---------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----------------~~~-------t~~~~--~~~~~~---------- 58 (182)
--..+|+|+|.-.+|||||+--+..+.... ... +.|++ -..++|
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 345899999999999999998886443211 011 11111 111222
Q ss_pred --cCeEEEEEEcCCCCCCcchhhhccCC--CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 59 --NNIKFQVWDLGGQTSIRPYWRCYFPN--TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 59 --~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
...-+.|+|.+|+.++.......+.. .|..++++.+...-.+.. +..+.-+ . ..+.|++++++|+|+..+.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~-~---AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLI-A---ALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHH-H---HhCCCeEEEEEeeccccch
Confidence 12357999999998876655443332 588888888866533211 1111111 1 1379999999999998663
Q ss_pred CHHHHHH----Hhcc---------------------ccccCCccEEEEecccCCCChHHHHHHH
Q 030149 135 DDAAVTE----ALEL---------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 135 ~~~~~~~----~~~~---------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+..-+ .+.. ......-.|+|.+|+.+|+|++-+...|
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 3322222 1111 1223345689999999999988765443
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=56.56 Aligned_cols=147 Identities=19% Similarity=0.269 Sum_probs=77.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEc--CeEEEEEEcC-CCC-----------C-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN--NIKFQVWDLG-GQT-----------S------- 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-g~~-----------~------- 73 (182)
...++|.|.|+||+||||++.++...--..-..--|+....+.-+ -..|.++|+. |.. .
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 356899999999999999999986321111111112222222222 2345556655 210 0
Q ss_pred ---Cc----chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc
Q 030149 74 ---IR----PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH 146 (182)
Q Consensus 74 ---~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (182)
+. ......++.+|++| +|-..+ ++.....+....+......+|.+.++++.+.. + -.+++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~-P-~v~~ik~~---- 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH-P-LVQRIKKL---- 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC-h-HHHHhhhc----
Confidence 11 11123344567654 565444 33333444444454444688999999988642 1 22222211
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
....+| .+.+|-+.+++.+++.|..
T Consensus 153 ----~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 ----GGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ----CCEEEE----EccchhhHHHHHHHHHhcc
Confidence 111122 6666777899888887764
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-08 Score=62.63 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEe
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
...++.+|++++|+|+.++.+... ..+...+... ..++|+++|+||+|+.++.......+.+. ..+..++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~-~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEV-DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhc-cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEE
Confidence 445788999999999988764331 1222222221 14789999999999964322222222222 223568999
Q ss_pred cccCCCC
Q 030149 159 SAIKGEG 165 (182)
Q Consensus 159 S~~~~~g 165 (182)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998763
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=68.01 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=60.9
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+..+|++++|+|+.++.+... ..+.... .++|+++|+||+|+.+....+...+.+. ..+.+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence 34556889999999999977654222 2233322 2689999999999964311112222221 1135689
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999998887654
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-07 Score=64.15 Aligned_cols=132 Identities=23% Similarity=0.176 Sum_probs=77.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc--------------cc-c------------ccceeEEEEEE-------------c
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS--------------TI-P------------TIGFNVETVQY-------------N 59 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~--------------~~-~------------t~~~~~~~~~~-------------~ 59 (182)
.++-|--||||||+++.++...... .. . +.|+-+.++.- +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 5778999999999999997433211 00 0 22233333211 2
Q ss_pred CeEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.....++++.|-............ ..|.++-|+|+.+-..... ....+...+... -++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 356788899986665443332222 2488999999866543222 333444443332 3999999999
Q ss_pred CCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 131 PGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
.++...+....... ..++..+++.++.
T Consensus 158 v~~~~l~~l~~~l~---~lnp~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLR---KLNPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHH---HhCCCCeEEEccc
Confidence 87643333333333 3456677888887
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.5e-08 Score=62.34 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc---ccc--cc----eeEEEEEEcCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST---IPT--IG----FNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~---~~t--~~----~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
-.++++|++|+|||||+|++.+...... ... .| ....-+.. .....++||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL-PDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE-TTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec-CCCcEEEECCCCCc
Confidence 6899999999999999999987643221 111 11 11222222 33568999999444
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=69.02 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccccc-----------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~-----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.++++|.+|+|||||+|+|.+........ |..... +.+.. ...++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEecC-CCEEEECCCCCccc
Confidence 47999999999999999999765433111 222222 22221 23599999976654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-07 Score=65.82 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=56.1
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
..++|.+++|+++..+-....+..++..... .+.+.++|+||+||.++ .++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 4688999999999644333333333333322 46778999999999754 22222222221 346789999999
Q ss_pred CCCChHHHHHHHH
Q 030149 162 KGEGLFEGLDWLS 174 (182)
Q Consensus 162 ~~~gi~~l~~~l~ 174 (182)
++.|+++|.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=65.34 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc-----------cccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..++++|.+|+|||||+|++.+....... .|....... .. ...++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~--l~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFH--FH--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEE--cC--CcEEEeCCCcccc
Confidence 47899999999999999999875432211 122333322 22 3489999996553
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.5e-07 Score=64.43 Aligned_cols=139 Identities=21% Similarity=0.196 Sum_probs=76.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCcc-cccc---------------cceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVVS-TIPT---------------IGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~~-~~~t---------------~~~~~~~~----------------- 56 (182)
+.-.++++|++|+||||++..+... +..- ...+ .+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998521 1100 0000 11111111
Q ss_pred EEcCeEEEEEEcCCCCCCcch----hhhc--------cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEE
Q 030149 57 QYNNIKFQVWDLGGQTSIRPY----WRCY--------FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
...+..+.++||||....... .... -...+..++|+|++... +...+ ...+... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 014568999999996543221 1111 12468899999997542 22322 2222221 2345788
Q ss_pred eecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 125 ANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
+||.|..... -.+..... ..+.|+..++ +|++++++.
T Consensus 266 lTKlD~t~~~--G~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKG--GVVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCc--cHHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 9999965331 12222221 1255677776 778887664
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=74.08 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----ccc--cceeEEEEEE-cCeEEEEEEcCCCCC--------Ccchhhhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPT--IGFNVETVQY-NNIKFQVWDLGGQTS--------IRPYWRCY 81 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (182)
.=.+|+|++|+||||++... +..+.-. ..+ .+-+. ..++ -..+-.++||+|..- -...|..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 34689999999999999987 3333211 111 11111 1111 234556999999321 12223322
Q ss_pred ---------cCCCCeEEEEEeCCCcch-----H----HHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 82 ---------FPNTQAIIYVVDSSDTER-----L----VIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 82 ---------~~~~d~ii~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
-+..|++|+++|+.+-.. . ..++..+.++.+.. ....|+.+++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 245799999999754321 1 23334444444333 35899999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=69.07 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=57.0
Q ss_pred CcchhhhccCCCC-eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCC
Q 030149 74 IRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNR 151 (182)
Q Consensus 74 ~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 151 (182)
+..... .+...+ .+++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ..+.+.+.... ..+..
T Consensus 59 ~~~~l~-~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~k~~ 129 (365)
T PRK13796 59 FLKLLN-GIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EAKEL 129 (365)
T ss_pred HHHHHH-hhcccCcEEEEEEECccCCC-----chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HHHhc
Confidence 344333 345455 9999999977531 2222222221 267899999999996432 22233222111 11111
Q ss_pred cc---EEEEecccCCCChHHHHHHHHHHH
Q 030149 152 QW---AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 152 ~~---~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 22 489999999999999999997653
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=71.31 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=45.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEE-EEEcCeEEEEEEcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET-VQYNNIKFQVWDLGG 70 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g 70 (182)
.+.|++||-|++||||+||+|.+.+....+.|.|-+..- .-+-...+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 499999999999999999999999999988888844332 223567789999999
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-07 Score=69.07 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----cccccccceeEEEEEEc-CeEEEEEEcCCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV-----VSTIPTIGFNVETVQYN-NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~ 73 (182)
..+|.++|.+|+|||||+|++.+... ....+..+.+.....+. +..+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCC
Confidence 35899999999999999999987432 12233333333333332 24568999999654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=57.03 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+..+.++||+|..... ...+..+|.++++....-.+.+.-.+. ..+ ..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence 5689999999854222 336778999999988763333222221 111 223488999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=67.97 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccc---------eeEEEEEEcCeEEEEEEcCCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---------FNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.++|+|.+|+|||||+|+|.+.......+..+ ....-+...+ ...++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCccc
Confidence 48999999999999999998765433221111 1122222222 237999999543
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.7e-07 Score=64.16 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
....++++.|..+...+...... ..+.++.++|+.+..............+.. .-++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 45688999997765554443321 248899999986543211111122222222 2389999999986
Q ss_pred CCCHHHHHHHhccccccCCccEEEEec
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+ .+.+...+.. .++..++++++
T Consensus 165 ~--~~~~~~~l~~---lnp~a~i~~~~ 186 (318)
T PRK11537 165 E--AEKLRERLAR---INARAPVYTVV 186 (318)
T ss_pred H--HHHHHHHHHH---hCCCCEEEEec
Confidence 4 2344444332 34555666654
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.5e-07 Score=64.46 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=75.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc----C--CCcc-ccc---------------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM----G--EVVS-TIP---------------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~----~--~~~~-~~~---------------t~~~~~~~~----------------- 56 (182)
+...|+++|++|+||||++..+.. . +..- ... ..+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 357899999999999998877742 1 1100 000 011111100
Q ss_pred EEcCeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
...+..+.++||+|........ ... ....|.+++|+|+..... .......+... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecC
Confidence 0124579999999966432211 111 235789999999865432 12222222211 1235788899998
Q ss_pred CCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
..... .-+..... .+.|+..++ +|++++++..
T Consensus 292 ~~~~G-~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGG-AALSIAYV------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCcc-HHHHHHHH------HCcCEEEEe--CCCChhhccc
Confidence 64322 22222211 245666665 7888877653
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-07 Score=67.88 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----CcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE-----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~-----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..++.++|.+|+|||||+|++.+.. .....+..|.+.....+ -+....++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 4589999999999999999998543 11122233333333322 12235899999953
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=64.72 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=70.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-----cccccceeEEEEEE--c--CeEEEEEEcCCCCC-------Ccc--
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQY--N--NIKFQVWDLGGQTS-------IRP-- 76 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-----~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~-------~~~-- 76 (182)
.-.+||+.+|.+|.||||||.++.+-++.. ..|+......+.+. . ..++.++||.|..+ +..
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 456999999999999999999999877654 22333333333333 2 35778999999211 110
Q ss_pred -----hhh-------------hcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 77 -----YWR-------------CYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 77 -----~~~-------------~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
... ..+ ...++++|.+.++.. ++..+.-....-+. ..+.||-++-|.|.....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 001 112 246889999987643 34433332222222 356788889999976543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=59.94 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=54.1
Q ss_pred cCeEEEEEEcCCCCCCcchhh-------hc-----cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEee
Q 030149 59 NNIKFQVWDLGGQTSIRPYWR-------CY-----FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~-------~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.++.+.++||||......... .. -..+|.+++|+|+... .+.. .....+.+. -.+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~----~~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEA----VGLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhh----CCCCEEEEE
Confidence 357899999999765332211 11 1237999999999643 2222 222333222 124688899
Q ss_pred cCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 127 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
|.|...... .-+.... ..+.|+..++ +|++++++..
T Consensus 226 KlDe~~~~G-~~l~~~~------~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGG-IILSIAY------ELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCcc-HHHHHHH------HHCcCEEEEe--CCCChHhCcc
Confidence 999854322 1111111 1135566666 7787777643
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-07 Score=63.45 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----CC-------Ccc------cccccceeEEEEEE---------------------c
Q 030149 19 RILVLGLDNAGKTTILYRLQM-----GE-------VVS------TIPTIGFNVETVQY---------------------N 59 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~-----~~-------~~~------~~~t~~~~~~~~~~---------------------~ 59 (182)
-++|.|..|||||||+++++. .+ +.. .....+.....+.. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 368999999999999999983 11 110 00011122222210 2
Q ss_pred --CeEEEEEEcCCCCCCcchh--h---hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 60 --NIKFQVWDLGGQTSIRPYW--R---CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 60 --~~~~~~~D~~g~~~~~~~~--~---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.....++++.|......+. . ...-..+.+|.|+|+.+..........+...+... -++++||+|+.+
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~ 155 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVS 155 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCC
Confidence 3577888999966555541 0 00123588999999866543334444444444433 389999999975
Q ss_pred CC
Q 030149 133 AL 134 (182)
Q Consensus 133 ~~ 134 (182)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=63.18 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEEEEE----------------
Q 030149 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVETVQY---------------- 58 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~~~~---------------- 58 (182)
...|+++|.+||||||++..+. +.+..- +.+ ..+........
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999985 222110 110 01111111100
Q ss_pred -cCeEEEEEEcCCCCCCcchhh----h--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 -NNIKFQVWDLGGQTSIRPYWR----C--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.+.++||||.......+. . ....++.+++|+|+.-.+... .....+.+ .-.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHh----ccCCcEEEEECccCC
Confidence 257899999999654432221 1 123578899999986553222 22222211 123567889999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.2e-06 Score=56.22 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCCCCcchh---h---hccCC---CCeEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW---R---CYFPN---TQAIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~---~---~~~~~---~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+-.+.++|+||+-+..... + .++.. --+++|++|..-- ++.......+.... ....-..|.|=|++|.|
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAls-AMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALS-AMISLEVPHINVLSKMD 175 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHH-HHHHhcCcchhhhhHHH
Confidence 3478999999976543321 1 11222 2356777775221 22222222222221 11223689999999999
Q ss_pred CCCCCCHHHHHHHhcc---------------------------ccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 130 LPGALDDAAVTEALEL---------------------------HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 130 l~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
|......+++.+.+.- ......=..|.+....+.+.++.++..|-.++
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9765333333222210 01111223467777777777776666665443
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=62.59 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc--c-----c--cceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI--P-----T--IGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~-----t--~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|.+.+....... + . .......+.... ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999875433211 1 0 111122222221 23689999976653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.4e-06 Score=60.94 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-.++.|.-|||||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345788999999999999999743
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-07 Score=66.79 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=49.5
Q ss_pred hhhc-CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCC
Q 030149 10 SSLF-GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQT 72 (182)
Q Consensus 10 ~~~~-~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 72 (182)
..+. ..+.+.|+++|-|++||||+||+|...+.+...|-.|.+...-.+ -..++.++|+||.-
T Consensus 299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence 4443 578899999999999999999999999999888876654332212 35688999999943
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=61.63 Aligned_cols=55 Identities=22% Similarity=0.104 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccc-----c----ceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPT-----I----GFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t-----~----~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
..++++|.+|+|||||+|++.+......... . ......+... ....++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-GGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-CCcEEEECCCcCc
Confidence 4789999999999999999987553321110 0 1111222222 2348899999654
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-06 Score=61.27 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---ccc--------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIP--------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~--------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..+++|.+|+|||||+|++.+..... .+. |.......+ ...-.++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l---~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL---PGGGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc---CCCCEEEeCCCCCccC
Confidence 78899999999999999998643222 111 222222222 2345688999976654
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-05 Score=56.99 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.+=++|+|+..+||||||.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 455789999999999999999994
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.3e-07 Score=64.50 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=46.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~ 71 (182)
.+.++|+|+|-|++||||+||++...+.+...++.|.+..--.. -+..+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 57899999999999999999999999988877777755433222 5778999999993
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=58.23 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC-------cc--ccccc---------------ceeEEEE-----------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV-------VS--TIPTI---------------GFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~-------~~--~~~t~---------------~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|...-. .. ...+. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3456899999999999999999863210 00 00010 1111111 114
Q ss_pred CeEEEEEEcCCCCCCcchhh---h---ccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccC-CCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR---C---YFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELR-GAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~---~---~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~-~~~iivv~nK~Dl~ 131 (182)
+..+.++||+|......... . ......-.++|++++... ........+.......... ..+-=+++||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 66899999999664432211 1 122345668899986542 2222222222221110000 01235777999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 4
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=54.04 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred CeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||||........ ..+ ....+-+++|++++... +... ....+.... .+--+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~----~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF----GIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS----STCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc----cCceEEEEeecCCCC
Confidence 4679999999966543221 111 12578899999986653 2222 233332221 123566899997543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|++.|++|+||||++.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00025 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998643
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.9e-05 Score=49.54 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCCCCCcchh----hhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++|+||........ ... ....+.+++|+|+..... .......+.+.. + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4578999999975332111 111 234899999999864432 223333333221 2 35777799997654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=42.00 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCeEEEEEeCCCcchH--HHHHHHHHHHHhhcccCCCeEEEEeecCC
Q 030149 84 NTQAIIYVVDSSDTERL--VIAKDEFHAILEEEELRGAVVLIFANKQD 129 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
-.++++|++|++....+ +.....+..+.... .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 46899999999876544 44445555554433 3899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=58.44 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-----------------------eeEEEE-----------EEcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-----------------------FNVETV-----------QYNN 60 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-----------------------~~~~~~-----------~~~~ 60 (182)
+.-.|+++|++|+||||.+-.|...-... ....++ .....+ .+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47889999999999999998885332201 111111 111110 1246
Q ss_pred eEEEEEEcCCCCCCcchh----hhccCC--CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYW----RCYFPN--TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~----~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.++||.|........ ..++.. ..-+.++++++.. ...+...+.++.. - ..--+++||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~-~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----F-PIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----C-CcceeEEEccccc
Confidence 799999999976544322 222222 3445667777544 2334443333321 1 2235677999965
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=7e-05 Score=44.45 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=45.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcch-hhhccCCCCeEEEEEeCCCc
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~ 97 (182)
+++.|..|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 678899999999999888632211 111111111 8999999986544331 13446678999999987644
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.6e-05 Score=57.28 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=60.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCc-----cccc-----------ccceeEEEEE---------------E
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------GEVV-----STIP-----------TIGFNVETVQ---------------Y 58 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~~~~-----~~~~-----------t~~~~~~~~~---------------~ 58 (182)
+...|+++|.+|+||||++..+.. .+.. .+.+ ..+....... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999988742 1110 0111 0011111000 0
Q ss_pred cCeEEEEEEcCCCCCCcchh------hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
....+.++||||........ ......+|.+++|+|++... ........+... -...-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 23489999999976543221 11234578999999986642 122222222111 11346777999964
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=46.90 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+...........+++.|++|+|||++++.+...-
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33333333456689999999999999999997543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.2e-05 Score=58.86 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CCcc-cccc---------------cceeEEEE-----------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EVVS-TIPT---------------IGFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~-~~~t---------------~~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|... +..- ...+ .+...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34578999999999999999888531 1110 0001 11111111 013
Q ss_pred CeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
+..+.++||+|......... .... ....++|++.... .......+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 57899999999643322111 1111 2345677776532 3333333333321 245679999999754
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.1e-05 Score=56.41 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCcc-----c-----------ccccceeEEEEE-----------E---c
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVVS-----T-----------IPTIGFNVETVQ-----------Y---N 59 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~~-----~-----------~~t~~~~~~~~~-----------~---~ 59 (182)
+...|+++|++|+||||++..+... +..- + ....+....... . .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 4468999999999999999998521 1100 0 001111111110 0 1
Q ss_pred CeEEEEEEcCCCCCCcch----hhhcc--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||+|....... ....+ ...+.+++|+|++-.. ......+..+.. -..--+++||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 358999999996543221 11212 2357788999875332 222333333211 2334678899997653
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.9e-05 Score=53.50 Aligned_cols=90 Identities=26% Similarity=0.314 Sum_probs=59.3
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+.+.|-.++++.+.+|+--.....-+.-..+. .+...++|+||+||..+..... +.. .......+.+++.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~--~~~-~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV--KEL-LREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH--HHH-HHHHHhCCeeEEEecCc
Confidence 44578888888888886433333333333333 4677788899999986544332 111 11223457789999999
Q ss_pred CCCChHHHHHHHHHHH
Q 030149 162 KGEGLFEGLDWLSNTL 177 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~ 177 (182)
++.|++++.+.+...+
T Consensus 151 ~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 151 NGDGLEELAELLAGKI 166 (301)
T ss_pred CcccHHHHHHHhcCCe
Confidence 9999999998876543
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-05 Score=54.22 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=68.9
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCC----------
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------- 74 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------- 74 (182)
+..++......+-.+++++|++|.|||+++++|.........+. .....+..+.+|.....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 45566666667779999999999999999999986554322111 11336666777652221
Q ss_pred --------------cchhhhccCCCCeEEEEEeCCCc---chHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 75 --------------RPYWRCYFPNTQAIIYVVDSSDT---ERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 75 --------------~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.......++...+=+++||--+. .+.......+..+......-..|+|.+|++-
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11222345666777888984321 1223333333333333344578999998764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.8e-05 Score=62.69 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCccc-----ccccceeEEEE-EEcCeEEEEEEcCCCC--------CCcchhhh----
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETV-QYNNIKFQVWDLGGQT--------SIRPYWRC---- 80 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~D~~g~~--------~~~~~~~~---- 80 (182)
=-+|+|++|+||||++..-.. +|.-. ....+...... -+-...-.++||.|.. .-...|..
T Consensus 127 Wy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 358999999999999865432 22111 00111110111 1134566788999932 11223332
Q ss_pred -----ccCCCCeEEEEEeCCCcch---------HHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 81 -----YFPNTQAIIYVVDSSDTER---------LVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 81 -----~~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+..|+||+++|+.+--+ ...++.-+.++... .....|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 2345799999999755221 11223334444333 335789999999999864
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.1e-05 Score=53.05 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=37.6
Q ss_pred EEEEEEcC-CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 62 KFQVWDLG-GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 62 ~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+.++||- |.+.|. +...+++|.+|.|+|++-. ++... ..+..+.+... -+++.+|+||+|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 45566654 333332 2335689999999998743 32222 23333333321 38999999999954
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.8e-05 Score=55.37 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=39.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC-----CcccccccceeEEE---EEE-cCeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE-----VVSTIPTIGFNVET---VQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~-----~~~~~~t~~~~~~~---~~~-~~~~~~~~D~~g~ 71 (182)
....++.|+|-||+|||||+|++.... .....+..|.+... +.+ ....+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 467999999999999999999985432 22233333433222 333 5567899999993
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
|
... |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=54.12 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCCCCcchh------hhccCCCCeEEE---EEeC---CCcchHHHHHHHHHHHHhhcccCCCeEEEEeec
Q 030149 60 NIKFQVWDLGGQTSIRPYW------RCYFPNTQAIIY---VVDS---SDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~---v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
...+.++|+|||-++.... ...+++.+.-+. .+|. ++|..|.... +.. +........|-|=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~l--L~s-l~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSL--LVS-LATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHH--HHH-HHHHHhhcccchhhhhH
Confidence 3468999999976543321 122333444444 4443 4454433221 111 12223346788889999
Q ss_pred CCCCCC
Q 030149 128 QDLPGA 133 (182)
Q Consensus 128 ~Dl~~~ 133 (182)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998654
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.6e-05 Score=49.68 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=32.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
...-+.|+|.+|||||||++++...-. ..+.....+......+.+ |.+|.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~D 55 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKD 55 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcH
Confidence 345789999999999999999974421 123333444444444443 667643
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.9e-05 Score=55.52 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=56.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCC-----ccccc-----------ccceeEEEE-------EE-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEV-----VSTIP-----------TIGFNVETV-------QY------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~-----~~~~~-----------t~~~~~~~~-------~~------- 58 (182)
.++..|+++|-.||||||.+-.+.. .+. ..|.| ..++.++.. ..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999888742 111 00222 111111111 00
Q ss_pred ---cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHH
Q 030149 59 ---NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHA 109 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (182)
..+.+.|+||+|......... ...-+.|-+++|+|+.-.+.-.+....+.+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 346899999999665544322 123467999999999776544444444433
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=54.42 Aligned_cols=65 Identities=20% Similarity=0.114 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCCCCCcchhh----h--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR----C--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
++.+.++||||......... . ..-..+.+++|+|+... .+.......+... -...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~----~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA----LGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh----CCCCEEEEeCccCc
Confidence 46799999999654322111 1 12256788999998543 2232333333221 12235677999964
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00044 Score=49.29 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc--------------------------------ccceeEEEEEE--
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP--------------------------------TIGFNVETVQY-- 58 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~--------------------------------t~~~~~~~~~~-- 58 (182)
...+..--++.|--|+|||||+|.++.+....... ..|+-+.++..
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 34566777889999999999999997443211100 22333444432
Q ss_pred -----------cCeEEEEEEcCCCCCCcchhhhccC--------CCCeEEEEEeCCCcch-HHHH--HHHHHHHHhhccc
Q 030149 59 -----------NNIKFQVWDLGGQTSIRPYWRCYFP--------NTQAIIYVVDSSDTER-LVIA--KDEFHAILEEEEL 116 (182)
Q Consensus 59 -----------~~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s-~~~~--~~~~~~~~~~~~~ 116 (182)
+.....+.+|.|......+...+.. ..|+++-++|+-+..- +++. ...+.....+..
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA- 211 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA- 211 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh-
Confidence 3456788999996655444332221 2499999999744210 0000 011111111111
Q ss_pred CCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 117 RGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
..--+++||.|+.+......+.+...
T Consensus 212 --~AD~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 212 --LADRIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred --hhheeeeccccccCHHHHHHHHHHHH
Confidence 22367789999987755555555443
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|++|||||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.9e-05 Score=56.86 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=56.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--------------CCCcc-------------cccccc----ee--------EEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM--------------GEVVS-------------TIPTIG----FN--------VET 55 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~--------------~~~~~-------------~~~t~~----~~--------~~~ 55 (182)
.+.--|+++|-.|+||||.+-.+.. +.|.. ..|-.+ .. ...
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 4567789999999999999988851 11100 011000 00 001
Q ss_pred EEEcCeEEEEEEcCCCCCCcchh----h--hccCCCCeEEEEEeCCCcchHHHHHHHHHHH
Q 030149 56 VQYNNIKFQVWDLGGQTSIRPYW----R--CYFPNTQAIIYVVDSSDTERLVIAKDEFHAI 110 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
+...+..+.|+||.|...-.... . .-.-..|-+|+|+|++-.+.-......+..-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 12246789999999954332211 1 1123579999999998776555554444443
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.2e-05 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|+|||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.5e-05 Score=56.94 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc--cccc---------------cceeEEEE-----------EEcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS--TIPT---------------IGFNVETV-----------QYNN 60 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~--~~~t---------------~~~~~~~~-----------~~~~ 60 (182)
+.-.++++|++|+||||++..+.+.. ... ...+ .+...... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44689999999999999999876421 000 0000 01111100 1145
Q ss_pred eEEEEEEcCCCCCCcch----hhhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPY----WRCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
....++||+|....... .... ....+-.++|+|++-.. ..+.+....+. .-.+-=+++||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~-----~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQ-----GHGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhc-----CCCCCEEEEEeeeCCC
Confidence 68899999996543221 1111 12345678899986432 22333333321 1223467789999754
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=4e-05 Score=58.07 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=77.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------Ccc---cccccceeEEEE--------------------EEc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS---TIPTIGFNVETV--------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------~~~---~~~t~~~~~~~~--------------------~~~ 59 (182)
.+..|.-|+.+...|||||-.++...- +.. ..+..+.+..+. +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 455788999999999999999985321 111 111112222221 113
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC---CCCCH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP---GALDD 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~---~~~~~ 136 (182)
+.-++++|.||+-+|.......++-.|+.+.|+|..+.--.. ....+.+.+. .....++++||.|.. -....
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH----hhccceEEeehhhHHHHhhcCCH
Confidence 456899999999999999999999999999999976542111 1122333322 234457788999952 12334
Q ss_pred HHHHHHhc
Q 030149 137 AAVTEALE 144 (182)
Q Consensus 137 ~~~~~~~~ 144 (182)
+++.+.++
T Consensus 172 EeLyqtf~ 179 (842)
T KOG0469|consen 172 EELYQTFQ 179 (842)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=54.80 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC-------CCcc--cccc---------------cceeEEEE-----------EEcCeE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG-------EVVS--TIPT---------------IGFNVETV-----------QYNNIK 62 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~-------~~~~--~~~t---------------~~~~~~~~-----------~~~~~~ 62 (182)
-.++++|++|+||||++..+... .-.. ...+ .+...... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 47899999999999998877421 1000 0001 00000000 113568
Q ss_pred EEEEEcCCCCCCcc----hhhhccC---CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 63 FQVWDLGGQTSIRP----YWRCYFP---NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 63 ~~~~D~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+.++||||...... .....+. ...-..+|++++.. ...+...+..+. . .+ +--+++||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~---~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-R---LP-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-C---CC-CCEEEEeccccccc
Confidence 99999999754431 1222222 33566788887543 223333333331 1 11 23688999997543
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=54.81 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCCCCcchhhh------ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRC------YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+..+.++||||.......... ..-..+.+++|+|+...+ ........+.... ...-++.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457999999996543221111 123478899999986442 2333333332211 2346668999954
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.3e-05 Score=41.83 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
..+|.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=55.02 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------Cc-----cc-----------ccccceeEEEE----------EEcCeEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE-------VV-----ST-----------IPTIGFNVETV----------QYNNIKF 63 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~-------~~-----~~-----------~~t~~~~~~~~----------~~~~~~~ 63 (182)
...++++|++||||||++..|.... .. .+ ....+...... .-.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999986311 10 00 00111111111 0036688
Q ss_pred EEEEcCCCCCCcc----hhhhcc-----CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 64 QVWDLGGQTSIRP----YWRCYF-----PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 64 ~~~D~~g~~~~~~----~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
.++||+|...... .+...+ ....-.++|+|++-.. .........+ .. -.+--+++||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 9999999653221 111111 1245688999986652 2222222222 11 2334678899997543
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=59.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
--++++|+.|+||||++..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999863
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=3e-05 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
|
... |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.1e-05 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.--++++|+.|+||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.2e-05 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=-|+|+|++|||||||++-+.+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33468999999999999999997543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.-.++++|++|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999985
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00076 Score=50.53 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC----------CCcc-cccc---------------cceeEEEE-----------EE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG----------EVVS-TIPT---------------IGFNVETV-----------QY 58 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~----------~~~~-~~~t---------------~~~~~~~~-----------~~ 58 (182)
+...|+++|++|+||||.+..+... +..- ...+ .+...... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3468999999999999999888521 1100 0000 11111111 11
Q ss_pred cCeEEEEEEcCCCCCCcc----hhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRP----YWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~----~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.+..+.++||+|...... .....+.. ..-.++|+|++.. ...+...+..+.. -.+-=+++||.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 467899999999654322 11122221 2368899998765 2333333333311 12446788999975
Q ss_pred C
Q 030149 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.4e-05 Score=51.35 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
.+-=.++++|++|||||||++.+..-..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3445789999999999999999975543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.8e-05 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=-|.++|++|||||||++.+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999997644
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=47.98 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+.++|.+|||||||++++... ....+.....+.+....+.+ |.+|..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~D 50 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKD 50 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccch
Confidence 5889999999999999999842 22234444555555555444 677643
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00093 Score=42.79 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=58.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEE--E--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC
Q 030149 21 LVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+.-|..|+|||++.-.+...-... ... ......+ . -.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~-~~~--~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKR--VLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC-CCc--EEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 455788999999977764211000 000 0000000 0 11789999999853 3334456888999999999763
Q ss_pred cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 97 TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
.++......+..+.... ...++.+++|+++.
T Consensus 79 -~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 33443334443332221 34577899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=42.61 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=47.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 20 ILVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 20 v~v~G-~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
|++.| ..|+||||+...+...-.. .+....-++. ....+.++|+|+..... ....+..+|.++++++.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 56666 5589999998777421110 0111111111 11778999999865432 335677799999999875 3
Q ss_pred chHHHHHHHHH
Q 030149 98 ERLVIAKDEFH 108 (182)
Q Consensus 98 ~s~~~~~~~~~ 108 (182)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=48.42 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|++++|+|+.++.+..+ ..+..... ....++|+++|+||+|+.++
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 78999999987643211 22222211 11236899999999999754
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999744
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.3e-05 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999754
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.9e-05 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|.|++|||||||.+.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999865
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.8e-05 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34578999999999999999998654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.9e-05 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-...++++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 366789999999999999999998754
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=49.71 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++.... ...-.++++|++||||||+++.+++.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444333 34568999999999999999999754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.3e-05 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+-|+|.|.+||||||+.+.+..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357789999999999999999974
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.5e-05 Score=47.89 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+..+||+|.|.||+|||||.+++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 56789999999999999999999743
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00042 Score=49.33 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-----CCcc-----------------cccccceeEEEE--------------EEc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG-----EVVS-----------------TIPTIGFNVETV--------------QYN 59 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~-----~~~~-----------------~~~t~~~~~~~~--------------~~~ 59 (182)
+.-+++++|++|+||||++..+... .... +....++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3479999999999999998887432 1000 000111111110 002
Q ss_pred CeEEEEEEcCCCCCCcch----hhhc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPY----WRCY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+..+.++||||....... +... ....+.+++|+|++-.. .........+.. -.+--+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 568999999997643221 1111 12457789999985431 223333333311 2345778899997653
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00064 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.5
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+.-++++.|+.|+||||++.++..
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 4456788999999999999999999973
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=51.60 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=62.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------------CCcc----c----ccccceeEEE---------EEE-----
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------------EVVS----T----IPTIGFNVET---------VQY----- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------------~~~~----~----~~t~~~~~~~---------~~~----- 58 (182)
.+..-++++|-.|+||||-+-.+... .|.. . ....++.... +-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45788999999999999999988521 1100 0 0011111111 111
Q ss_pred ---cCeEEEEEEcCCCCCCcchhh-------hccC-----CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEE
Q 030149 59 ---NNIKFQVWDLGGQTSIRPYWR-------CYFP-----NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~~-------~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.++.+.++||+|.-.-..... ..+. ..+-+++++|+.-.+.--...+.+..... --=+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-------l~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-------LDGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-------CceE
Confidence 467899999999543322111 1122 23558889999776433333333333322 2367
Q ss_pred EeecCCCC
Q 030149 124 FANKQDLP 131 (182)
Q Consensus 124 v~nK~Dl~ 131 (182)
++||.|..
T Consensus 290 IlTKlDgt 297 (340)
T COG0552 290 ILTKLDGT 297 (340)
T ss_pred EEEecccC
Confidence 78999964
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.8e-05 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++..-|+|+|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999974
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.1e-05 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|.|+|+.|||||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+|+|+|+|||||||+.+.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999863
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=46.61 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
...++++|++|+|||+++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35789999999999999999975443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.3e-05 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=52.59 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=23.8
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
|+........+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567899999999999999998764
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....+|+|.|++|||||||++++++.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 46789999999999999999999854
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.9e-05 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999754
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.6e-05 Score=47.23 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.++++|++|||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|++||||||+++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997543
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00078 Score=41.01 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=53.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchH
Q 030149 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERL 100 (182)
Q Consensus 23 ~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (182)
=+..|+||||+...+...-... ... ......+. ....+.++|+|+.... .....+..+|.++++.+.+. .+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~---~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~ 79 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRR---VLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSI 79 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCc---EEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHH
Confidence 3557899999877764211000 000 00000000 1128999999986543 33445678999999998753 344
Q ss_pred HHHHHHHHHHHhhcccC-CCeEEEEeec
Q 030149 101 VIAKDEFHAILEEEELR-GAVVLIFANK 127 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-~~~iivv~nK 127 (182)
.........+.+. ... ...+.+|+|+
T Consensus 80 ~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 80 RNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 4444444444332 222 4467777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=9.8e-05 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-++++|++|||||||++.+.+-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999997644
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0001 Score=46.22 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999644
|
... |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0001 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998654
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=52.45 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+........+-|+|.|++||||||+.+.+..
T Consensus 75 ~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 75 EQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3355444556789999999999999999998854
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-+++++|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999986543
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00056 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
...+++|.|++||||||++++++..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999643
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+..-|+++|++|||||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34558999999999999999997653
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=16.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.......++|.|++|+|||+|++++.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44566889999999999999999875
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-.|+|+|++|+|||||+|-+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh
Confidence 3445799999999999999999864
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..-|+|+|++|||||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35567889999999999999999754
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00023 Score=49.06 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+....-.+|++.|+||+|||+|..++..
T Consensus 10 ~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 10 SAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 334444556999999999999999999865
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00012 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+|+++|+|||||+|+...+..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3458899999999999999999864
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=47.04 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=24.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
........-.|+|.|++||||||++++++..
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 3333345557999999999999999998654
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-=-|+++|++|||||||+|-+.+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhc
Confidence 34689999999999999999865
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
=-|+++|++|+|||||++++.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 4589999999999999999976
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00014 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-|+|+|++||||||+++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00018 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.+-|+|.|++|||||||.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHH
Confidence 45779999999999999998774
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0003 Score=46.73 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+........|+|.|.+||||||+.+.+...
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344577888999999999999999999754
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00018 Score=48.29 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00018 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+--.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556899999999999999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+.-.++++|+.|+|||||++.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345578999999999999999998654
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00014 Score=50.27 Aligned_cols=20 Identities=35% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|+|.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999864
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00018 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||||+...+..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+|+|.|++|||||||+++++.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999999974
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00075 Score=51.48 Aligned_cols=88 Identities=26% Similarity=0.195 Sum_probs=47.5
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE---cCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.+....+.--++|.|++||||||.+.+++..-...... +-.-...+++ +-..+++.+-.|......+....=++.
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~n-I~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDP 328 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERN-IITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDP 328 (500)
T ss_pred HHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCce-EEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCC
Confidence 344555777889999999999999999997654433211 1111222233 234555555555443333333322345
Q ss_pred CeEEEEEeCCCcc
Q 030149 86 QAIIYVVDSSDTE 98 (182)
Q Consensus 86 d~ii~v~d~~~~~ 98 (182)
|++ +|--+.|.+
T Consensus 329 DvI-mVGEIRD~E 340 (500)
T COG2804 329 DVI-MVGEIRDLE 340 (500)
T ss_pred CeE-EEeccCCHH
Confidence 543 344444433
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00019 Score=47.52 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 182 | ||||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-65 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 4e-64 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 9e-63 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 1e-62 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-62 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 5e-62 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 9e-62 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 6e-61 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 9e-60 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 2e-59 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 3e-59 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 1e-58 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-57 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 3e-57 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 6e-57 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 5e-56 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 2e-55 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 2e-55 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 1e-54 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 1e-54 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 1e-54 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-53 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 3e-53 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 4e-51 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 6e-51 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 8e-51 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 3e-50 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 5e-50 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 4e-48 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 4e-48 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 4e-48 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 4e-45 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 6e-45 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 8e-45 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-44 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-44 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 3e-43 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 7e-41 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-37 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 2e-37 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 3e-37 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-36 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 1e-35 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-29 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 8e-28 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 9e-28 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 5e-27 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-24 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 4e-23 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 1e-22 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-22 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-22 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 6e-22 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 4e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 3e-07 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 4e-07 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 5e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 8e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 1e-06 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 2e-06 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-06 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 3e-06 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 3e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 5e-06 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 8e-06 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 9e-06 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 1e-05 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 1e-05 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 1e-05 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-05 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-05 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-05 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-05 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-05 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-05 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-05 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-05 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 3e-05 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 3e-05 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 3e-05 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-05 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 3e-05 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-05 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 3e-05 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-05 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 4e-05 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 4e-05 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 4e-05 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 4e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 4e-05 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 4e-05 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 4e-05 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 4e-05 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 4e-05 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 4e-05 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 4e-05 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 4e-05 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 4e-05 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 4e-05 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 4e-05 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 4e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 4e-05 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 4e-05 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-05 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 4e-05 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 4e-05 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 4e-05 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 4e-05 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 5e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 5e-05 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-05 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 6e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 6e-05 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 6e-05 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 7e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 7e-05 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 7e-05 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 7e-05 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 7e-05 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 8e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 8e-05 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 9e-05 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-05 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 9e-05 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 1e-04 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-04 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-04 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 2e-04 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 2e-04 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 3e-04 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 3e-04 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 4e-04 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 4e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 5e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 5e-04 | ||
| 3ohm_A | 327 | Crystal Structure Of Activated G Alpha Q Bound To I | 6e-04 | ||
| 3ah8_A | 355 | Structure Of Heterotrimeric G Protein Galpha-Q Beta | 6e-04 | ||
| 4ekc_A | 347 | Structure Of Human Regulator Of G Protein Signaling | 6e-04 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 6e-04 | ||
| 2bcj_Q | 353 | Crystal Structure Of G Protein-coupled Receptor Kin | 6e-04 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 7e-04 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 7e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 7e-04 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 7e-04 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 7e-04 | ||
| 4gnk_A | 353 | Crystal Structure Of Galphaq In Complex With Full-l | 8e-04 |
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327 | Back alignment and structure |
|
| >pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355 | Back alignment and structure |
|
| >pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-113
Identities = 100/182 (54%), Positives = 136/182 (74%), Gaps = 3/182 (1%)
Query: 1 MGIMFTRL---FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ 57
MG L L +++ R+L+LGLDNAGKT+ILYRL +G+VV+T+PT+G N+ET+Q
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELR 117
Y NI F+VWDLGGQT +RPYWRCYF +T A+IYVVDS+D +R+ +AK E +A+L+E+ELR
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 GAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+++LIFANKQDLP A +A + E L + I NR W I K+S+ G+GL EG+DWL L
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 KS 179
+
Sbjct: 183 RE 184
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-113
Identities = 87/179 (48%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+FTR++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+F +WD+GGQ S+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+LIFANKQD+ + A +++ L+L IK+ QW I A+ GEGL +GL+W+ + LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-112
Identities = 86/179 (48%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG + T L +E R+L+LGLDNAGKTTIL + +V + PT+GFN++T+++
Sbjct: 3 MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
K +WD+GGQ S+R YWR YF +T +I+VVDS+D +R+ + E ++L EE L GA
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+LIFANKQDLPGAL A+ EALEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-111
Identities = 108/168 (64%), Positives = 133/168 (79%)
Query: 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
TSIRPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A++++FANKQD+
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ + + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 314 bits (807), Expect = e-111
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYNNIKFQVW 66
+E + ++GL +GKTT + + G+ IPT+GFN+ + N+ ++W
Sbjct: 13 GLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLW 72
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D+GGQ R W Y AI+Y+VD++D E++ +K+E H +L++ +L+G VL+ N
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
K+DLPGALD+ + E + L I++R+ + S + + + L WL KS
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-111
Identities = 111/180 (61%), Positives = 143/180 (79%), Gaps = 1/180 (0%)
Query: 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN 59
MG +F+ +F L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA 119
N+K VWDLGGQTSIRPYWRCY+ +T A+I+VVDS+D +R+ A E H +L+EEEL+ A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQD PGAL + V++ L L ++K+R W+I +SAIKGEG+ EGLDWL + +K
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 311 bits (800), Expect = e-110
Identities = 100/179 (55%), Positives = 134/179 (74%), Gaps = 4/179 (2%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
G LFS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 17 RGS----LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+ + DE +L+E+ELR AV
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQD+P A+ + +T+ L L +++R W + T A +G GL++GLDWLS+ L
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = e-109
Identities = 63/181 (34%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
Query: 5 FTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
F + +SL NK ++L LGLDNAGKTT+L+ L+ + + PT E + NIKF
Sbjct: 10 FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
+DLGG R W+ YFP I+++VD++D ER A+ E A+ EL+ +I
Sbjct: 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 129
Query: 124 FANKQDLPGALDDAAVTEALELHKIKN-------RQWAIFKTSAIKGEGLFEGLDWLSNT 176
NK D P A+ +A + AL L R +F S + G E WLS
Sbjct: 130 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
Query: 177 L 177
+
Sbjct: 190 I 190
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-109
Identities = 81/176 (46%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 4 MFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
+ +L S ++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K
Sbjct: 5 ILRKLKS--APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
VWD+GGQ IRPYWR YF NT +IYV+DS+D +R E +LEEE+L VLI
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
FANKQDL A + + E L LH I++R W I SA+ GEG+ +G++W+ + +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 306 bits (786), Expect = e-108
Identities = 83/181 (45%), Positives = 120/181 (66%), Gaps = 4/181 (2%)
Query: 1 MG--IMFTRLFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV 56
MG S L G++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116
NN +F +WD+GGQ S+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+L
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 117 RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
R A +LIFANKQD+ + A +++ L+L IK+ QW I A+ GEGL +GL+W+ +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 177 L 177
L
Sbjct: 181 L 181
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = e-106
Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 6/184 (3%)
Query: 2 GIMFTRLFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFNVETVQ 57
S L G+KE +L LGLDN+GKTTI+ +L+ + +PTIGF++E +
Sbjct: 4 SHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK 63
Query: 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL- 116
+++ F V+D+ GQ R W Y+ QAII+V+DSSD R+V+AK+E +L ++
Sbjct: 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123
Query: 117 -RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
R +L FANK DL A+ V++ L L IK++ W I + AIKGEGL EG+DWL +
Sbjct: 124 HRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183
Query: 176 TLKS 179
+++
Sbjct: 184 QIQT 187
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 299 bits (768), Expect = e-106
Identities = 99/161 (61%), Positives = 129/161 (80%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP A++ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = e-105
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 1 MGIMFTRLFSSL--------FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN 52
M +F ++S K +++ LGLDNAGKTT+L+ L+ + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILE 112
E + + F +DLGG R W+ Y P I+++VD +D ERL+ +K+E +++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 EEELRGAVVLIFANKQDLPGALDDAAVTEAL------------ELHKIKNRQWAIFKTSA 160
+E + +LI NK D P A+ + + E L ++ R +F S
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 IKGEGLFEGLDWLSNTL 177
+K +G EG W++ +
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 1e-99
Identities = 104/179 (58%), Positives = 134/179 (74%)
Query: 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQDLP A++ A +T+ L LH +++R W I T A G+GL+EGLDWLSN L++
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-75
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 9/172 (5%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN---IKFQVWDLGGQ 71
+ + +L +GL ++GKT + RL G+ T +I + + NN + DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 TSIRP-YWRCYFPNTQAIIYVVDSSDTERLVI-AKDEFHAILEEEEL--RGAVVLIFANK 127
S+R + + +A+++VVDS+ +R V + + +L + +LI NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
QD+ A + + LE R S + L K
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS--TAPAQLGKKGKE 174
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 3e-67
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 26/193 (13%)
Query: 8 LFSSLFGNKEARILVLGLDNAGKTTILYRL-------QMGEVVS----TIPTIGFN---- 52
+ +I+ G +GKTT L + + GE+VS T+ F+
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64
Query: 53 -VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAIL 111
+ V+ +F ++ + GQ + I++V DS+ RL + +
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMR 123
Query: 112 EE-----EELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166
E L ++I NK+DLP AL V ++ ++ + + A +G+G+
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE----GKFPVLEAVATEGKGV 179
Query: 167 FEGLDWLSNTLKS 179
FE L +S + +
Sbjct: 180 FETLKEVSRLVLA 192
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-65
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69
S G+ + I++ G N+GKT++L L V T+ + + Y+ + D
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99
Query: 70 GQTSIRPYWRCYFPN----TQAIIYVVDSS-DTERLVIAKDEFHAILEEEEL---RGAVV 121
G +R Y + +I++VDS+ D ++L + IL E G +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 122 LIFANKQDLPGALDDAAVTEAL--ELHKIKNRQ 152
LI NK +L A + + +AL E+ K+ R+
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 5e-65
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 10 SSLFG---NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
S + + + I++ G N+GKT++L L V T+ + + Y+ +
Sbjct: 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLV 60
Query: 67 DLGGQTSIRPYWRCYFPN----TQAIIYVVDSS-DTERLVIAKDEFHAILEEEEL---RG 118
D G +R Y + +I++VDS+ D ++L + IL E G
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 119 AVVLIFANKQDLPGALDDAAVTEAL--ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174
+LI NK +L A + + +AL E+ K+ R+ K + L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 1e-46
Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 17/175 (9%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQ 64
+ F + RIL++GL +GK++I +++ E + T + + + + FQ
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72
Query: 65 VWDLGGQTSIRPYW---RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
+WD GQ F T A+IYV+D+ D + + +
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNF 132
Query: 122 LIFANKQDLPGALDDAA--------VTEALELHKIKNRQWAIFKTSAIKGEGLFE 168
+F +K D + L ++ + + TS I +FE
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS-IYDHSIFE 186
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 1e-43
Identities = 36/221 (16%), Positives = 66/221 (29%), Gaps = 47/221 (21%)
Query: 5 FTRLFSSLFGNKEARILVLG--LDNAGKTTILYRLQMGEVVST-------IPTIGFNVET 55
T SL E R + G L+ + +L + E+ T I IG V
Sbjct: 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNF 63
Query: 56 VQYNNIKFQV---------------------------------WDLGGQTSIRPYWRCYF 82
N KF + G + S+ P +
Sbjct: 64 QLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVC 123
Query: 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE----LRGAVVLIFANKQDLPGALDDAA 138
IYV ++ +R + H + + ++++ Q +
Sbjct: 124 EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFY 183
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ L L+ + N W + T A G G++W+ ++S
Sbjct: 184 LAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 223
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-37
Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE----LRGAVVL 122
G + S+ P + IYV ++ +R + H + + +++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 IFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ Q + + L L+ + N W + T A G G++W+ ++S
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 308
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-35
Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 20/179 (11%)
Query: 17 EARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQ 71
+++L++G +GK+++ + TI +++ N+ +WD GGQ
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 72 TS-----IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELR--GAVVLIF 124
F Q +I+V D TE L + F L++ A + +
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKYSPDAKIFVL 121
Query: 125 ANKQDLPGALDDAAVTEAL------ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+K DL + + + + F TS I E L++ + +L
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTS-IWDESLYKAWSQIVCSL 179
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 3e-21
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 20 ILVLGLDNAGKTTIL----YRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+L++G+ GK++I + +Q + + T ++E I V +L GQ +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60
Query: 76 PYW---RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDL 130
F + A++YV+DS D I I+E + + + +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITN--LAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-12
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 26/169 (15%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE---VVSTIPTIG--FNVETVQYNN-----IKFQVWDLG 69
++++G +GKTT+L +L + + T+G +Q + + VWD
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEELRG--AVVLIF 124
G+ + + V D S + E A+ L + R + V++
Sbjct: 65 GREEFYSTHPHFMTQRALYLAVYDLSKGQ------AEVDAMKPWLFNIKARASSSPVILV 118
Query: 125 ANKQDLPGALDDAAVT-----EALELHKIKNRQWAIFKTSAIKGEGLFE 168
D+ A E L + F + + + L +
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAK 167
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 5e-11
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 31/184 (16%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWDLGG-- 70
+ +++ G N GK+T+L L + +++ P T G NV + ++Q+ D G
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 71 ------------QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EEL 116
Q + + IIY+ D S+ + +E + EE E
Sbjct: 226 DRPISERNEIEKQAILALRYLGN-----LIIYIFDPSEHCGFPL--EEQIHLFEEVHGEF 278
Query: 117 RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176
+ L+ NK D+ + + + ++ + K SA+KG G+ + + T
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLN-----PIKISALKGTGIDLVKEEIIKT 333
Query: 177 LKSI 180
L+ +
Sbjct: 334 LRPL 337
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 8e-11
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 28/174 (16%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV------------ETVQYNNI 61
+E ++ ++G AGKT++L +L T G NV +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG--A 119
F WD GGQ + + + + + ++DS + L E G +
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK-----HYW--LRHIEKYGGKS 151
Query: 120 VVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG---LFEGL 170
V++ NK D + + + + + S G+G + + L
Sbjct: 152 PVIVVMNKIDEN---PSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-10
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG GK++I+ R + + PTIG F + V N +KF++WD GQ
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
Y+ N QA + V D + + + A+ L E+ + ++ + NK D
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165
+ V + + F+TSA GE
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-10
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 22/151 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++++G GKTT + R GE + T+G + N IKF VWD GQ
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILE-EEELRGA----VVLIFANKQD 129
Y+ Q I + D V ++ + + +L +++ NK D
Sbjct: 78 GGLRDGYYIQAQCAIIMFD-------VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 130
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+ D +++ H+ KN Q+ + SA
Sbjct: 131 IK---DRKVKAKSIVFHRKKNLQY--YDISA 156
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-09
Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 32/187 (17%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWD------ 67
+ I++ G N GK++ + + V V + T V + K+Q+ D
Sbjct: 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88
Query: 68 ----------LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKD--EFHAILEEEE 115
+ T++ I++++D S+ L I + F++I +
Sbjct: 89 RAFENRNTIEMTTITALAHINGV-------ILFIIDISEQCGLTIKEQINLFYSI--KSV 139
Query: 116 LRGAVVLIFANKQDLPGALDDAAVTEAL--ELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
++I NK D + + L ++ S + G G+ +
Sbjct: 140 FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199
Query: 174 SNTLKSI 180
LK+
Sbjct: 200 CELLKND 206
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 2e-08
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----- 96
+ + T G Q + + F ++D+GGQ R W F + AII+VV SS
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 97 -----TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
T RL A + F +I LR V++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 3e-08
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD------- 96
+ + T G + ++ F+++D+GGQ S R W F AII+ V SD
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 97 ---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R+ + F +I + +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-07
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD------- 96
+ PT G + + N+ F++ D+GGQ S R W F + +I+++V SS+
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 97 ---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
T RL + + F I+ +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ +++G GK+ +L + TIG F V + IK Q+WD GQ S
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R R Y+ + V D + ++ F+ + LE+ V+++ NK
Sbjct: 83 FRSITRSYYRGAAGALLVYDITR-------RETFNHLTSWLEDARQHSSSNMVIMLIGNK 135
Query: 128 QDL 130
DL
Sbjct: 136 SDL 138
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GK+ +L R E + + TIG F T++ IK Q+WD GQ
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ + V D S + L E V + NK
Sbjct: 75 YRAITSAYYRGAVGALIVYDISK-------SSSYENCNHWLSELRENADDNVAVGLIGNK 127
Query: 128 QDL 130
DL
Sbjct: 128 SDL 130
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD GQ
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ + V D + + + L + V+++ NK
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHADSNIVIMLVGNK 119
Query: 128 QDL 130
DL
Sbjct: 120 SDL 122
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GKT +L R E + TIG F+ TV +K Q+WD G
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ + V D + + + L + VV++ NK
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTK-------HQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 128 QDL 130
DL
Sbjct: 140 SDL 142
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I++ G GK++ L RL E + T+G F ++T+ + Q+WD GQ
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R + YF ++ + D + + F I +E+ +++ NK
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTC-------EKSFLNIREWVDMIEDAAHETVPIMLVGNK 142
Query: 128 QDLP 131
D+
Sbjct: 143 ADIR 146
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-07
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD------- 96
+PT G ++ F++ D+GGQ S R W F N +I+++V S+
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 97 ---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R+ +K F I+ + + V++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++ LG + GKT+++ R +T TIG F +T+ + ++ Q+WD G
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y ++ + V D ++ + F + E ++++ NK
Sbjct: 79 RSLIPSYIRDSTVAVVVYDITN-------VNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 129 DLP 131
DL
Sbjct: 132 DLA 134
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + + TIG F V +K Q+WD GQ
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R R Y+ + V D + ++ ++++ L + VV++ NK
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITS-------RETYNSLAAWLTDARTLASPNIVVILCGNK 139
Query: 128 QDL 130
+DL
Sbjct: 140 KDL 142
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ II V D +D + F I + E A +L+ NK
Sbjct: 65 FRTITTAYYRGAMGIILVYDITD-------ERTFTNIKQWFKTVNEHANDEAQLLLVGNK 117
Query: 128 QDLP 131
D+
Sbjct: 118 SDME 121
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G + GKT+ L+R + + T+G F V+TV ++ IK Q+WD GQ
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ + + D ++ ++ F A+ ++ A V++ NK
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIAN-------QESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 128 QDLP 131
DL
Sbjct: 137 CDLE 140
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G + GKT+ L+R + + T+G F V+TV + +K Q+WD GQ
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y+ I + D ++ ++ F+A+ ++ A V++ NK
Sbjct: 86 RTITTAYYRGAMGFILMYDITN-------EESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLP 131
D+
Sbjct: 139 DME 141
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-07
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ +++G GK+ +L++ + + TIG F ++ + IK Q+WD GQ
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R R Y+ + V D + + ++ + L + V+++ NK
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITR-------RSTYNHLSSWLTDARNLTNPNTVIILIGNK 129
Query: 128 QDL 130
DL
Sbjct: 130 ADL 132
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G + GKT+ L+R + + T+G F V+T+ N+ IK Q+WD G
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ I + D ++ ++ F+A+ ++ A VL+ NK
Sbjct: 70 YRTITTAYYRGAMGFILMYDITN-------EESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122
Query: 128 QDLP 131
D+
Sbjct: 123 CDME 126
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-07
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y+ II V D +D + F I + E A +L+ NK
Sbjct: 83 RTITTAYYRGAMGIILVYDVTD-------ERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 129 DLP 131
D+
Sbjct: 136 DME 138
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-07
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQT 72
+++++G GKT +L R + G + I T+G F + + + +K Q+WD GQ
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFAN 126
R Y+ + A++ + D ++ K F I L E +++ N
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTN-------KASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 127 KQDLP 131
K D
Sbjct: 125 KVDSA 129
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-07
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++ LG + GKT+++ R +T TIG F +T+ + ++ Q+WD GQ
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y ++ + V D ++ + FH + E ++++ NK
Sbjct: 77 RSLIPSYIRDSTVAVVVYDITN-------TNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 129 DL 130
DL
Sbjct: 130 DL 131
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-07
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GKT +L+R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ I+ V D ++ + F I +EE +I NK
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITN-------EKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 128 QDLP 131
D+
Sbjct: 123 CDVN 126
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-07
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYN---NIKFQVWDLGGQT 72
+I+VLG +GKT++ TIG F + + N+ Q+WD+GGQT
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI--LEEEELRGAVVLIFANKQDL 130
Y Q ++ V D ++ + +D + + + EE +V + NK DL
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 131 P 131
Sbjct: 128 E 128
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 32/159 (20%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GKT+++ R + T+G F ++TV+ I+ Q+WD GQ
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
Y+ + + II V D + K+ F + +++ A +L+ NK
Sbjct: 88 FNSITSAYYRSAKGIILVYDITK-------KETFDDLPKWMKMIDKYASEDAELLLVGNK 140
Query: 128 QDLPGALDDAAVTE------ALELHKIKNRQWAIFKTSA 160
D D +T A ++ ++ + SA
Sbjct: 141 LDCE---TDREITRQQGEKFAQQITGMR-----FCEASA 171
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GKT ++ R G TIG F ++TV+ N +K Q+WD GQ
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R + Y+ + A+I D + ++ F + L E E + ++ NK
Sbjct: 88 FRSITQSYYRSANALILTYDITC-------EESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 QDLP 131
DL
Sbjct: 141 IDLA 144
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD G
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R Y+ + V D + + + L+E V+++ NK
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 128 QDL 130
DL
Sbjct: 144 SDL 146
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G GK+ +L R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y+ II V D +D ++ F+ + ++ L+ NK
Sbjct: 96 RTITSSYYRGAHGIIVVYDVTD-------QESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 129 DLP 131
DL
Sbjct: 149 DLT 151
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 26/155 (16%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG---FNVETVQYNN--IKFQVWDLGGQTS 73
I ++G GKTT + R+ G + T+G V + IKF VWD GQ
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
Y+ I D V ++ + + A +++ ANK
Sbjct: 74 KAVLKDVYYIGASGAILFFD-------VTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126
Query: 128 QDLPGALDDAAVT--EALELHKIKNRQWAIFKTSA 160
D+ + ++ +E+ K KN ++ F+ SA
Sbjct: 127 IDIK---NRQKISKKLVMEVLKGKNYEY--FEISA 156
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + + TIG F + + +K Q+WD GQ
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---RGAVVLIFANK 127
R R Y+ + V D + ++ ++A+ L + + + V+++ NK
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITS-------RETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 QDL 130
+DL
Sbjct: 125 KDL 127
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+ +LG GK++I++R + PTIG F +TVQY N KF +WD G
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y+ + A I V D + ++ F + L + VV I NK
Sbjct: 69 RALAPMYYRGSAAAIIVYDITK-------EETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 129 DLP 131
DL
Sbjct: 122 DLT 124
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-06
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 53 VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVI 102
V + + ++++D+GGQ + R W F A+I+ S+ R++
Sbjct: 175 VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234
Query: 103 AKDEFHAILEEEELRGAVVLIFANKQDL 130
K+ F +L++ ++F NK D+
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-06
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R Y+ II V D +D ++ F+ + ++ L+ NK
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTD-------QESFNNVKQWLQEIDRYASENVNKLLVGNK 130
Query: 128 QDLP 131
DL
Sbjct: 131 CDLT 134
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG GKT+++ R + I T+G F + + + +WD GQ
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
Y+ ++ I V D +D +D F + L + + I NK
Sbjct: 69 HALGPIYYRDSNGAILVYDITD-------EDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 129 DL 130
DL
Sbjct: 122 DL 123
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-06
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G + GKT ++ R + G TIG F ++T++ +K Q+WD GQ
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANK 127
R + Y+ + I D + + F ++ + + V L+ NK
Sbjct: 91 FRTITQSYYRSANGAILAYDITK-------RSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 128 QDLPGALDDAAVT--EALELHKIKNRQWAIFKTSA 160
DL + V+ EA L + +TSA
Sbjct: 144 SDLS---ELREVSLAEAQSLAE-HYDILCAIETSA 174
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+ +LG GK++I+ R + PTIG F +TV N KF +WD GQ
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
Y+ + A + V D + +D F+ + L+E V+ I NK
Sbjct: 86 HSLAPMYYRGSAAAVIVYDITK-------QDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 129 DL 130
DL
Sbjct: 139 DL 140
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G GK+ +L R I TIG F ++TV+ + +K Q+WD GQ
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
R Y+ + II V D +D ++ F+ + ++ + L+ NK
Sbjct: 71 RTITSSYYRGSHGIIIVYDVTD-------QESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLP 131
DL
Sbjct: 124 DLK 126
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G GK+++L R TIG F V+T+ + K +WD GQ
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
R Y+ Q +I V D + + V + + + V ++ NK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-06
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 10/150 (6%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN---IKFQVWDLGGQTS 73
+++LG GKT++++R + TIG F + V + QVWD GQ
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 74 IRPYWRCYFPNTQAIIYV--VDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
+ ++ + V V ++ + E + +DEF +I NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 131 PGALDDAAVTEALELHKIKNRQWAIFKTSA 160
+ + A EL K +F TSA
Sbjct: 131 EESKKIVSEKSAQELAK-SLGDIPLFLTSA 159
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-06
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+++L R S I TIG F + TV+ N +K Q+WD GQ
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEE--EELRGAVVLIFANKQ 128
R Y+ T +I V D + + F + L E + ++ NK
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTS-------AESFVNVKRWLHEINQNCDDVCRILVGNKN 123
Query: 129 DLP 131
D P
Sbjct: 124 DDP 126
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-06
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 14 GNKEAR--ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVW 66
GNK + +++LG GK++++ R G+ TIG F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAK---DEFHAILEEEELRGAVVLI 123
D GQ Y+ QA I V D ++ E AK E L+ + V+ +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE----LQRQASPNIVIAL 116
Query: 124 FANKQDL 130
NK DL
Sbjct: 117 SGNKADL 123
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-06
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+V+G N GKT + YR G T TIG F V + IK Q+WD GQ
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 74 IRP-----YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL----RGAVV 121
R Y+R N A+++V D ++ FH++ +EE +
Sbjct: 82 FRKSMVQHYYR----NVHAVVFVYDMTN-------MASFHSLPAWIEECKQHLLANDIPR 130
Query: 122 LIFANKQDL 130
++ NK DL
Sbjct: 131 ILVGNKCDL 139
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-06
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ--- 71
+++LG GKT+++ + + TIG F + V ++ + Q+WD GQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 72 -TSIRPYWRCYFPNTQAIIYV--VDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANK 127
+ ++R + V V + +T + L +DEF + ++ NK
Sbjct: 71 QSLGVAFYR----GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 128 QDLP 131
DL
Sbjct: 127 IDLE 130
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-06
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 85 TQAIIYVVD-SSDTERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDDAA 138
T+ ++YV+D + + + +E L L+ NK DL A
Sbjct: 236 TRVLLYVLDAADE------PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKA 289
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+ +AL A+ SA+ G GL + L ++S
Sbjct: 290 LADALA-----REGLAVLPVSALTGAGLPALKEALHALVRST 326
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 9e-06
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 85 TQAIIYVVDSSDTERLVIAKDEFHAILEE-----EELRGAVVLIFANKQDLPGALDDAA- 138
T+ I++V+D S E D + I +E L +I ANK D+P A ++
Sbjct: 237 TRVIVHVIDMSGLEGRDPYDD-YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEA 295
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
E L + +F SA+ EGL E L ++N L++
Sbjct: 296 FKEKLT------DDYPVFPISAVTREGLRELLFEVANQLENT 331
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 21/156 (13%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG-FNVETVQYNN--IKFQVWDLGGQ 71
+E +++VLG GK+ + + G + PTI F + ++ ++ ++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
S+R Y N Q I V + + K I+ + V++ NK
Sbjct: 62 EQFASMR---DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118
Query: 129 DLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
DL + V+ E L +W +TSA
Sbjct: 119 DLE---SEREVSSSEGRAL----AEEWGCPFMETSA 147
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 22/158 (13%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN-VETVQYNN--IKFQVWDLG 69
G+ E +++V+G D GK+ + +L V PTI + + V + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
GQ +++R Y + + V ++T+ I ++ +++ N
Sbjct: 61 GQEEYSAMR---DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 127 KQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
K D L V +A +L R + I +TSA
Sbjct: 118 KCD----LPSRTVDTKQAQDL----ARSYGIPFIETSA 147
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-05
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ--- 71
+++LG GK++++ R + TIG F + ++ + + Q+WD GQ
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 72 -TSIRPYWRCYFPNTQAIIYV--VDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANK 127
+ P++R + + VD S + + L K EF + +E +I NK
Sbjct: 70 RSLRTPFYR----GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125
Query: 128 QDLPGALDDAAVT--EALELHKIKNRQWAIFKTSA 160
D + + V+ EA + N + F+TSA
Sbjct: 126 ID----ISERQVSTEEAQAWCR-DNGDYPYFETSA 155
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG AGK++++ R + V TIG F +T+ N+ +KF++WD GQ
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI------LEEEELRGAVVLIFANKQ 128
Y+ A I V D ++ + F L+ + V+ + NK
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTN-------QASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 129 DL 130
DL
Sbjct: 128 DL 129
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-05
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 46/162 (28%)
Query: 4 MFTRLFSSLFGNKEARILVL-GLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK 62
+ +L +L + A+ +++ G+ +GKT + +V + + V+ I
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLS-----YKVQCKMDFKI- 184
Query: 63 FQVWDLGGQTSIRPYW----RCYFPNT-----QAIIYVVDSSDTERLVIAKDEFHAILEE 113
+W C P T Q ++Y +D + T R + + L
Sbjct: 185 --------------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR---SDHSSNIKLRI 227
Query: 114 EELRGAVVLIFANKQDLPGAL---DD---AAVTEALELH-KI 148
++ + + +K L + A A L KI
Sbjct: 228 HSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKI 268
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 20/141 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN---VETVQYNNIKFQVWDLGGQTSI 74
+I+V+G GKT +L+ +PT+ N + I+ +WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR----GAVVLIFANKQ 128
+P++ A++ D + + ++L++ E++ +L+ K
Sbjct: 69 DNVRPLSYPDSDAVLICFD-------ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 129 DLPGALDDAAVTEALELHKIK 149
DL D + L H+
Sbjct: 122 DL---RTDVSTLVELSNHRQT 139
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 29/134 (21%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN------------IKF 63
++L LG GKTT LYR + I T+G F + V YN +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEE----EEL 116
Q+WD GQ R +F + + + D + + F + + +
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS-------QQSFLNVRNWMSQLQANAYC 139
Query: 117 RGAVVLIFANKQDL 130
+++ NK DL
Sbjct: 140 ENPDIVLIGNKADL 153
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-05
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 23/158 (14%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLG 69
+K +I +LG + GK+++ + G+ V + PTI F + + N Q+ D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 70 GQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
GQ + Y + I V + + + K +L+ +++ N
Sbjct: 63 GQDEYSIFPQT---YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 127 KQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
K+DL + ++ E L W ++SA
Sbjct: 120 KKDLH---MERVISYEEGKAL----AESWNAAFLESSA 150
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-05
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN-VETVQYNN--IKFQVWDLGGQ 71
E +++V+G GK+ + +L V PTI + + V + + D GQ
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 72 ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
+++R Y + + V ++++ I ++ +++ NK
Sbjct: 80 EEYSAMR---DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 129 DLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
D L V +A EL + + I +TSA
Sbjct: 137 D----LPTRTVDTKQAHEL----AKSYGIPFIETSA 164
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 8e-05
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK 147
++ +D++ I E+ ++ +++ NK DL ++ + +
Sbjct: 307 VLLTIDAATGW-----TTGDQEIYEQ--VKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 148 IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
I T+A + +G+D L + I
Sbjct: 360 -------IVHTAAAQK----QGIDSLETAILEI 381
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-05
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN------------IKF 63
+ L LG GKT++LY+ G+ I T+G F + V Y I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEEEEL---- 116
Q+WD G R +F + + + D ++ + F + + + ++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN-------EQSFLNVRNWISQLQMHAYS 125
Query: 117 RGAVVLIFANKQDL 130
+++ NK DL
Sbjct: 126 ENPDIVLCGNKSDL 139
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++V+G GK++++ R G TIG F +Q N+ ++ +WD GQ
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI---LEE--EELRGAVVLIFANKQD 129
+ Y+ QA + V ++D ++ F AI E+ E+ + NK D
Sbjct: 68 DAITKAYYRGAQACVLVFSTTD-------RESFEAISSWREKVVAEVGDIPTALVQNKID 120
Query: 130 LP 131
L
Sbjct: 121 LL 122
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 20/140 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN---VETVQYNNIKFQVWDLGGQTSIR 75
++++G GKT +L L T +PT+ N + ++ +WD G
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE--EELR----GAVVLIFANKQD 129
+ ++ A++ D + + + L++ E+ VL+ K D
Sbjct: 90 NVRPLCYSDSDAVLLCFD-------ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142
Query: 130 LPGALDDAAVTEALELHKIK 149
L D + L K
Sbjct: 143 LR---TDLSTLMELSHQKQA 159
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 88 IIYVVDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALEL 145
I+Y++D D+ + E A L ANK D D AL
Sbjct: 316 ILYLLDLGTER-----LDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------ALIR 364
Query: 146 HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+ SA+ G +G+D L + +
Sbjct: 365 AIADGTGTEVIGISALNG----DGIDTLKQHMGDL 395
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK 147
+++V+D+S +E ILE ++ L+ NK D+ +++ + L +
Sbjct: 327 VLFVLDASSPL-----DEEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLGTDR 379
Query: 148 IKNRQWAIFKTSAIKGEGL 166
+ K SA+KGEGL
Sbjct: 380 ------HMVKISALKGEGL 392
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKF 63
F + + ++++LG GKT++ ++ GE PT+ ++ + V
Sbjct: 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHL 74
Query: 64 QVWDLGGQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+ D GQ + + + + V + + + + + E
Sbjct: 75 HLVDTAGQDEYSILPYS---FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131
Query: 121 VLIFANKQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
V++ NK DL + V E +L W ++SA
Sbjct: 132 VVLVGNKADLS---PEREVQAVEGKKL----AESWGATFMESSA 168
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 24/157 (15%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGG 70
E +++V+G GK+ + +L V PTI + + V + + D G
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAG 60
Query: 71 Q---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANK 127
Q +++R Y + + V ++T+ I ++ +++ NK
Sbjct: 61 QEEYSAMR---DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 128 QDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
D L V +A +L R + I +TSA
Sbjct: 118 SD----LAARTVESRQAQDL----ARSYGIPYIETSA 146
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 18/127 (14%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVETVQYNN--IKFQVWD 67
S+ E R+ VLG +GK+++++R G T + + + + +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIRE 60
Query: 68 LGGQTSIRPYWRCYFPNTQAIIYV--VDSSDT-ERLVIAKDEFHAILEEEELRGAVVLI- 123
G + + A+I+V ++ ++ + + + ++ E A+ L+
Sbjct: 61 EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 124 FANKQDL 130
++
Sbjct: 116 TQDRISA 122
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 9/118 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVETVQYNN--IKFQVWDLGGQ---T 72
++L+LG GK+ + E G ++ + V+D+ Q
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
+ A + V +D A + + + +++ NK DL
Sbjct: 64 WLP---GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKF 63
F S+ + E ++ + G GK+ ++ R + PT+ + ++ +
Sbjct: 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSM 78
Query: 64 QVWDLGGQ--TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
++ D GQ T R + + + V D +D + + E ++ + +
Sbjct: 79 EILDTAGQEDTIQREG---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135
Query: 122 LIFANKQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
++ NK DL V+ E +L + A ++ SA
Sbjct: 136 ILVGNKADLD---HSRQVSTEEGEKL----ATELACAFYECSA 171
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 17/152 (11%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+T+ + + P + + + V+D+ Q
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 74 IRPYWR-CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
+ R A + V +D + + V++ NK DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA- 143
Query: 133 ALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
V+ E L + +TSA
Sbjct: 144 --RSREVSLEEGRHL----AGTLSCKHIETSA 169
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 6e-04
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 33/163 (20%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLG 69
+ + R++V G GK++++ R G T IPTI + + + + Q+ D
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64
Query: 70 GQ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEE-EELRGAV----V 121
G +++ R A I V + + L +E I + +++G+V V
Sbjct: 65 GSHQFPAMQ---RLSISKGHAFILVFSVTSKQSL----EELGPIYKLIVQIKGSVEDIPV 117
Query: 122 LIFANKQDLPGALDDAAVT--EALELHKIKNRQWAI--FKTSA 160
++ NK D V EA + ++W +TSA
Sbjct: 118 MLVGNKCD----ETQREVDTREAQAV----AQEWKCAFMETSA 152
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG-FNVETVQYNN--IKFQVWDLGGQ 71
+E +++VLG GK+ + + G V PTI + V+ + ++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ---TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
T++R Y N Q V + +D IL ++ +++ NK
Sbjct: 62 EQFTAMR---DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 129 DL 130
DL
Sbjct: 119 DL 120
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 8e-04
Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 34/177 (19%)
Query: 14 GNKEAR-ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDL 68
G+ +A +V+G GKT +L F V + +WD
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILE--EEELR----GAVVL 122
GQ +P T + + S +++ F + E+R ++
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSL-ICFS------LVSPASFENVRAKWYPEVRHHCPNTPII 113
Query: 123 IFANKQDLPGALDDAAVTEALELHKIK----NRQWAIFK---------TSAIKGEGL 166
+ K DL DD E L+ K+ + A+ K SA+ GL
Sbjct: 114 LVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.98 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.98 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.98 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.98 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.98 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.98 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.98 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.98 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.98 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.98 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.98 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.98 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.98 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.98 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.98 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.98 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.98 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.96 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.95 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.93 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.93 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.93 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.92 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.92 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.92 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.91 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.91 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.91 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.91 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.91 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.91 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.91 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.9 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.9 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.9 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.9 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.9 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.9 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.9 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.9 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.9 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.89 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.89 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.88 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.88 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.88 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.87 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.87 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.87 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.87 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.86 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.86 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.85 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.85 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.84 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.84 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.84 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.83 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.82 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.81 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.8 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.78 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.78 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.77 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.76 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.75 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.74 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.74 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.73 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.73 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.73 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.72 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.72 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.71 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.71 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.68 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.67 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.67 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.66 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.61 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.58 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.58 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.37 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.37 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.23 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.15 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.1 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.08 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.07 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.04 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.03 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.98 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.89 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.86 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.63 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.63 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.58 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.54 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.53 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.34 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.24 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.16 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.1 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.04 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.04 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.83 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.74 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.71 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.7 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.7 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.66 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.63 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.62 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.62 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.6 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.59 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.58 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.58 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.57 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.57 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.57 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.56 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.52 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.52 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.5 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.48 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.47 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.47 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.46 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.46 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.46 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.46 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.46 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.45 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.44 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.44 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.43 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.42 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.42 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.42 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.41 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.41 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.4 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.4 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.4 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.39 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.39 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.38 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.38 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.38 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.38 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.38 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.37 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.37 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.37 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.37 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.37 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.36 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.35 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.35 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.35 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.34 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.34 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.33 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.33 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.33 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.33 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.33 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.33 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.32 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.32 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.31 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.31 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.31 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.31 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.3 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.3 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.3 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.3 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.3 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.29 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.29 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.29 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.29 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.29 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.27 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.27 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.27 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.27 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.26 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.26 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.26 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.26 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.25 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.24 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.23 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.23 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.23 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.23 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.22 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.21 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.21 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.21 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.2 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.2 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.19 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.19 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.18 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.17 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.17 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.17 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.17 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.17 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.16 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.16 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.16 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.16 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.15 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.15 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.15 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.15 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.15 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.15 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.14 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.14 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.14 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.14 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.14 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.13 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.12 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.12 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.11 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.1 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.1 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.1 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.1 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.09 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.08 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.08 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.08 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 97.07 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.06 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.05 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.05 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.04 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.04 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.03 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.02 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 97.02 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.02 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.01 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.0 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.99 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.99 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.98 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.98 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.98 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.98 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.98 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.98 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.98 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.97 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.96 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.96 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.96 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.96 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.95 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.92 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.92 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.91 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.9 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.89 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.88 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.87 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.85 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.84 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.83 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.82 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.82 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.81 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.81 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.81 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.8 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.79 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.79 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.78 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.78 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.77 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.77 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.73 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.73 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.72 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.72 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.71 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.7 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.69 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.68 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.68 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.67 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.65 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.65 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.64 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.64 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.64 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.63 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.62 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.62 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.61 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.61 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.59 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.58 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.57 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.56 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.56 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.56 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.55 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.55 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.54 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.54 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.5 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.49 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.49 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.49 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.49 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.48 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.48 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.48 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.47 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.45 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.45 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.44 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.43 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.43 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.42 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.42 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.42 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.41 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 96.41 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.41 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.38 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.38 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.38 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.38 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.36 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.35 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.35 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.33 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.33 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.33 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.32 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.32 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.28 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.25 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 96.24 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 96.23 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 96.2 |
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=215.06 Aligned_cols=179 Identities=49% Similarity=0.872 Sum_probs=154.2
Q ss_pred CccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 1 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++ ++..+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+++..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8889999988 888999999999999999999999999888878888988888888889999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999998877654568999999999999876666777766655444556778999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|+++++++|.+.+...
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999987653
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=213.90 Aligned_cols=180 Identities=62% Similarity=1.095 Sum_probs=156.3
Q ss_pred CccchHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
||..+++++++++. ++.++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88999999999988 89999999999999999999999988887788899988888888899999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887655456899999999999987766777777776555555677899999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|+|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=214.15 Aligned_cols=180 Identities=56% Similarity=1.031 Sum_probs=157.4
Q ss_pred CccchHHHhh--hhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcch
Q 030149 1 MGIMFTRLFS--SLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
||.+++++++ +++. ++.++|+++|++|+|||||++++..+.+..+.||.+.....+.+.+..+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7777777777 7777 889999999999999999999999888888888999888888889999999999999999999
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+..........++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999888877655568999999999999877666777777765555666789999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|+|++++++++.+.+.+.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=212.39 Aligned_cols=176 Identities=56% Similarity=1.003 Sum_probs=151.2
Q ss_pred chHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC
Q 030149 4 MFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
++..++++++..+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+..+++
T Consensus 16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 95 (192)
T 2b6h_A 16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQ 95 (192)
T ss_dssp -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHH
T ss_pred hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhc
Confidence 45567788888999999999999999999999999988888888999888888889999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCc
Confidence 99999999999999999999999988877655568999999999999876667777777766555667788999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|+++++++|.+.+.+
T Consensus 176 ~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 176 TGLYDGLDWLSHELSK 191 (192)
T ss_dssp BTHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=208.56 Aligned_cols=178 Identities=48% Similarity=0.860 Sum_probs=146.5
Q ss_pred CccchHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhh
Q 030149 1 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|| .+. .+.+++. .+.++|+++|++|+|||||++++.++....+.||.+.....+.+++..+.+|||||++.+...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 55 444 5566665 78999999999999999999999988865688899988888888999999999999999999999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999998887765557899999999999987766677776665544455678899999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|+|++++++++.+.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=199.51 Aligned_cols=166 Identities=65% Similarity=1.092 Sum_probs=148.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999888888999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998887765557899999999999987766777777776555566778999999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 998764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=206.20 Aligned_cols=167 Identities=47% Similarity=0.850 Sum_probs=144.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877788999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|++++|++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999988888887665557899999999999987666666766665444455677899999999999999999999
Q ss_pred HHHhhcC
Q 030149 175 NTLKSIG 181 (182)
Q Consensus 175 ~~~~~~~ 181 (182)
+.+.+.+
T Consensus 174 ~~~~~~~ 180 (181)
T 1fzq_A 174 KNVNAKK 180 (181)
T ss_dssp HTC----
T ss_pred HHHHhcc
Confidence 8876654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=200.00 Aligned_cols=163 Identities=61% Similarity=1.071 Sum_probs=143.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
++|+++|++|+|||||++++.++.+..+.||.+.....+.+.+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988888888899987778888899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+++.....|+..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765567899999999999987666677777766555556678899999999999999999999987
Q ss_pred hhc
Q 030149 178 KSI 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=203.36 Aligned_cols=173 Identities=36% Similarity=0.615 Sum_probs=139.7
Q ss_pred chHHHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhcc
Q 030149 4 MFTRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 4 ~~~~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
++.+.++.. ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+++..+.+|||||++.+...+..++
T Consensus 9 ~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 88 (190)
T 1m2o_B 9 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYF 88 (190)
T ss_dssp ---------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGC
T ss_pred HHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHH
Confidence 344444543 4577899999999999999999999999888888999988888888999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-------ccCCccEE
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-------IKNRQWAI 155 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 155 (182)
+.+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.... ....++++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999999999999998887765557899999999999987666666666554322 23356789
Q ss_pred EEecccCCCChHHHHHHHHHH
Q 030149 156 FKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~ 176 (182)
+++||++|+|++++|++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=213.60 Aligned_cols=161 Identities=19% Similarity=0.297 Sum_probs=122.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.+||+|+|++|+|||||++++..+.+.. +.||++..... +.. ..+.+.+|||+|++++..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34678999999999999999999999998876 78888855443 333 34788999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++++|+.+..|+..+.... .++.|+++|+||+|+.+. ...++..+. ++..+++|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBS
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhH-----HHHhCCeeEEEeCCCCcC
Confidence 999999999999999999999886553 368999999999999643 233333222 223456799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
|+++|+.|.+.+..
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=204.09 Aligned_cols=171 Identities=31% Similarity=0.605 Sum_probs=136.0
Q ss_pred HHhhhh-cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 7 RLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 7 ~~~~~~-~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
..++.. +..+.++|+++|++|+|||||++++.++.+..+.||.+.+...+.+++..+.+|||||++.+...+..+++.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence 344443 5577899999999999999999999998887788888888888888889999999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc---------c---cCCcc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK---------I---KNRQW 153 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~ 153 (182)
|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....++..+.+.... . ....+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999999999887765556899999999999987656666666554321 1 12467
Q ss_pred EEEEecccCCCChHHHHHHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++++|||++|+|++++|++|.+.+
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 899999999999999999997654
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=200.63 Aligned_cols=168 Identities=34% Similarity=0.675 Sum_probs=145.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++.++|+|+|++|+|||||++++.++.+.. +.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 3678999999999999999999999888764 788999888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++.....|+..+.......+.|+++|+||+|+......+++.+.+........+++++++||++|.|+++++++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999988877655578999999999999876666777766665555556788999999999999999999
Q ss_pred HHHHHhhcC
Q 030149 173 LSNTLKSIG 181 (182)
Q Consensus 173 l~~~~~~~~ 181 (182)
|.+.+.+.+
T Consensus 179 l~~~~~~~~ 187 (188)
T 1zd9_A 179 LIQHSKSRR 187 (188)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhhc
Confidence 998876543
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=199.57 Aligned_cols=164 Identities=48% Similarity=0.851 Sum_probs=142.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34678999999999999999999999999877888988888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|+++++++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999988877654578999999999999876667777777665555556778999999999999999999
Q ss_pred HHHH
Q 030149 173 LSNT 176 (182)
Q Consensus 173 l~~~ 176 (182)
|.+.
T Consensus 177 l~~~ 180 (181)
T 2h17_A 177 MMSR 180 (181)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=200.45 Aligned_cols=168 Identities=37% Similarity=0.682 Sum_probs=143.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.+..+|+|+|++|+|||||++++.+..+.. +.+|.+.....+......+.+|||||++.+...+..+++.+|++|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 44688999999999999999999999988765 4889998888888899999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhccc-------CCCeEEEEeecCCCCCCCCHHHHHHHhccccc-cCCccEEEEecccC
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEEL-------RGAVVLIFANKQDLPGALDDAAVTEALELHKI-KNRQWAIFKTSAIK 162 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~ 162 (182)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+..... ...+++++++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 99999999999999999888765332 27899999999999887777777776664433 55678899999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
|+|++++|++|.+.+.+.
T Consensus 173 g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 999999999999988765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=196.82 Aligned_cols=169 Identities=43% Similarity=0.785 Sum_probs=140.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCC--CcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+.++|+++|++|+|||||++++.+.. ...+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34678999999999999999999999887 3347788888888888889999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhccc--CCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEEL--RGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999999999999998888766443 5799999999999987666677766665333344577899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
++++|.+.+.+..
T Consensus 177 l~~~l~~~i~~~k 189 (190)
T 2h57_A 177 GVDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=208.58 Aligned_cols=167 Identities=61% Similarity=1.074 Sum_probs=146.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+|+|++|+|||||++++.+..+....||.+.....+...+..+.+|||||++.+..++..+++.+|++|+|+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988887789999988999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+++++++.....++..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++|+.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998877788888888777667778899999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=187.14 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=106.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEe
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVD 93 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.+||+++|++|+|||||++++.+.......++.+.+.. .+.. ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776666665554433 2333 45678999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 94 SSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
++++++++....|+..+.......+.|+++|+||+|+.+.... .+....+. ...+++++++||++|+|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999998887665678999999999999754221 22222221 223468999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=187.29 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=129.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 568999999999999999999999777655 667776443 3334444 678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 99999999999999999888777666789999999999996432 223332222 22356799999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
+|+.+.+.+.+..
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=186.84 Aligned_cols=159 Identities=23% Similarity=0.393 Sum_probs=126.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888765 667777443 344443 4589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+..... ..+....+. ...+++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA----EEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----HHHTCEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCH
Confidence 999999999999988888776553 36799999999999864311 111112221 223467999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 157 ~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 157 NDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=186.15 Aligned_cols=160 Identities=14% Similarity=0.243 Sum_probs=126.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+.+||+++|++|+|||||++++.++.+.. +.+|.+.....+.+.+ ..+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 44788999999999999999999999988766 6666554445566655 667889999998766 667799999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC----CCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG----ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++..+... ....++++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEEEecCCCCCC
Confidence 9999999999999999988887665446799999999999842 222233322222 12236799999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+++.+.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=184.67 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=116.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee--EEEEEEcC--eEEEEEEcCCCCC--CcchhhhccCCCCeE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNN--IKFQVWDLGGQTS--IRPYWRCYFPNTQAI 88 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (182)
.+.++|+++|++|+|||||++++.+..+....++.+.+ ...+.+++ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998877655555543 34445544 5789999999887 566677888999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.+++....|+..+.......+.|+++|+||+|+.+.. ..++.... . ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC-A----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH-H----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH-H----HHcCCeEEEEecCCCCCH
Confidence 9999999999999998888877665444579999999999997532 22222221 1 123467999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 157 AELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=178.63 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=127.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999887765 5666664432 2223 346799999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++....|+..+.......+.|+++|+||+|+.+.. ..++...... ...+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999999988888888776555689999999999996432 2233332221 123577999999999999999
Q ss_pred HHHHHHHHh
Q 030149 170 LDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~~~ 178 (182)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998774
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=189.92 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=126.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE---EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET---VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+..... +......+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 3678999999999999999999999888766 55666644322 2225688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+... +. ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-LA----ESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-HH----HHhCCeEEEEeCCCCCCHH
Confidence 999999999999999999988776666689999999999986432 2222222 21 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|+.|.+.+.+.
T Consensus 176 ~l~~~l~~~i~~~ 188 (201)
T 3oes_A 176 GIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=181.56 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=126.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|... ....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888765 4455542 233344444 457889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999988887666678999999999999754333333333322 224579999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (189)
T 4dsu_A 158 YTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=184.17 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=131.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45678999999999999999999999887765 5666664433 344444 6789999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AFG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HHH----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999999888776666789999999999996432 222222 221 223568999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
++++++|.+.+.+.
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=181.54 Aligned_cols=161 Identities=20% Similarity=0.313 Sum_probs=130.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+. ...+.+|||||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 467999999999999999999999888765 667766443 334443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999988888888765545689999999999995432 223332222 22356799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=183.43 Aligned_cols=162 Identities=21% Similarity=0.304 Sum_probs=128.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC---eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. +.||.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3578999999999999999999999888755 566766 4455666654 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCe-EEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAV-VLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~-iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
+++|+|+++++++.....|+..+..... ....| +++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999999888888777655321 12344 8999999999642 22233322221 23467999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
.|++++|++|.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988765
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=177.69 Aligned_cols=163 Identities=15% Similarity=0.284 Sum_probs=128.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3567999999999999999999999888765 667776543 4444554 6899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+... ...++..+... ....++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999988888877765432 257899999999999632 23333333222 1345679999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 030149 165 GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 165 gi~~l~~~l~~~~~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=179.13 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=129.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34678999999999999999999999887665 566666443 2333344 4567799999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEeccc-CCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAI-KGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~g 165 (182)
++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999999888877666678999999999999652 23333322222 223669999999 9999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++++|+.|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=180.93 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=126.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 467899999999999999999999888765 555655433 2344444 589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999888877665568999999999998643 22333333222 2345799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+++++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=181.99 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=125.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+ .....+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 567999999999999999999999888765 666766 3345555555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCcc-EEEEecccCCCCh
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQW-AIFKTSAIKGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (182)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999999888888776543 367999999999999642 23333333222 2345 7999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=182.85 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=129.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 567999999999999999999999888765 56666644 44455555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+...... .+... +. ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKE-FA----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEeCCCCCCHH
Confidence 999999999999998888777554 3357899999999999754322 22222 21 2234579999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=181.67 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=128.0
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 44678999999999999999999999888766 45666643 3344444 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|++++.+++....|+..+.... .++.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|+|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999888888876543 3589999999999996432 233333322 22356799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
+++++++|.+.+.+.
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=181.78 Aligned_cols=161 Identities=19% Similarity=0.341 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc--ccccccceeEEE--EEEcC--eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+..... +...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988875 366777655443 34444 589999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.++. ..++...... ..+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999999988888877765432 679999999999997542 2223222221 2245799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=182.86 Aligned_cols=161 Identities=17% Similarity=0.277 Sum_probs=124.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+..... +... ...+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 567999999999999999999999988765 66777644433 3333 3567999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccE-EEEecccCCCC
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWA-IFKTSAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~g 165 (182)
|+|+++++++..+...|...+... ..+.|+++|+||+|+.++ ...++..+... ..+++ ++++||++|.|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCCC
Confidence 999999999998744444333332 357999999999999643 22233322222 12344 99999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+.|.+.+.+..
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999887653
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=184.16 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=130.9
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...+.+.++|+|+|++|+|||||++++.+..+.. +.+|.+... ..+.+.+ ..+.+|||||++.+...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445678999999999999999999999888755 556665433 3444444 58999999999999999999999999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCC
Confidence 99999999999999999999888877655568999999999999643 22333333322 234579999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|++++|++|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988765
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=181.50 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=127.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+.+.++|+++|++|+|||||++++.++.+.. +.++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999887766 556666443 334443 57899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999888888776543 357999999999998643 2223332222 224568999999999999
Q ss_pred HHHHHHHHHHHh
Q 030149 167 FEGLDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~l~~~~~ 178 (182)
++++++|.+.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (170)
T 1r2q_A 157 NEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=179.91 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=120.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999888765 6677765443 34443 357899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++.....|+..+... ...+.|+++|+||+|+.++ ...++..+.. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 999999999999988888776543 2357999999999999643 2233333222 2234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=184.37 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.||.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 467999999999999999999999877654 66666644 34455555 78999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999988888777554 23578999999999997532 233332222 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 160 NAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=182.15 Aligned_cols=161 Identities=21% Similarity=0.345 Sum_probs=128.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3567999999999999999999999888765 566766444 334443 46899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 9999999999999888888777554 33579999999999996432 2223222221 12457999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
++++++|.+.+.+.
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=181.07 Aligned_cols=159 Identities=25% Similarity=0.393 Sum_probs=126.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 577999999999999999999999887665 5666653 344555555 78999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999988888876543 479999999999986432 222222221 1224579999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 160 EMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=180.60 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=116.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC--eEEEEEEcCCCCCCcc-hhhhccCCCCeEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTQAIIY 90 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++.+..... ..++.......+..++ ..+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766544 2233444445555544 6788999999988776 66777888999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998887665568999999999999632 2223322222 23356899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
+|+.+.+.+...+
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=177.60 Aligned_cols=160 Identities=27% Similarity=0.386 Sum_probs=122.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++.+..+.. +.++.+.. ...+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999888755 56666643 3444444 3689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.......+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHH
Confidence 999999999988888887775543 357899999999999543222222222221 124579999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=181.46 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=127.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999887765 55555532 33444444 5699999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999999999888776655689999999999986432 2222222211 12457999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=181.14 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=127.8
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCC
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+.+..+.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+..+ ...+.+|||||++. ...+..+++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 98 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW 98 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence 344455788999999999999999999999888765 5666664432 24444 46799999999988 7788888999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++
T Consensus 99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACT 173 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCc
Confidence 9999999999999999999888888876655568999999999999642 22233322221 1256899999999
Q ss_pred CC-ChHHHHHHHHHHHhhc
Q 030149 163 GE-GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~-gi~~l~~~l~~~~~~~ 180 (182)
|. |++++|++|.+.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 174 GEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 99 9999999999988764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=179.02 Aligned_cols=159 Identities=26% Similarity=0.338 Sum_probs=126.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.... .+.+. ...+.+|||||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999988655 6677775443 34443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999888887777543 346899999999999964322 222222 21 2235679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=185.17 Aligned_cols=159 Identities=23% Similarity=0.324 Sum_probs=127.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999888765 667776443 3455544 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999888888777544 3357899999999999642 2223322221 1234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=178.30 Aligned_cols=162 Identities=21% Similarity=0.366 Sum_probs=130.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE---EEEEc-----------CeEEEEEEcCCCCCCcchh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 78 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+... ...+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 4667999999999999999999999887755 6777776544 33333 4689999999999999999
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEE
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+++.+|++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEE
Confidence 9999999999999999999999998888888876654468999999999999642 22333332222 1245799
Q ss_pred EecccCCCChHHHHHHHHHHHhhc
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
++||++|.|+++++++|.+.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=178.65 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=128.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEE--EE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETV--QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.+.... .. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 678999999999999999999999988764 777777554433 33 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--CCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+ ....++..+.. ...+++++++||++|.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999998888777554 335799999999999964 22333333332 2345789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=180.18 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee-EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|++|+|||||++++.++.+..+.||.+.. ...+..++ ..+.+|||||++. ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 57899999999999999999999999887777777743 33344443 6789999999876 4567789999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc--ccCCCeEEEEeecCCCCC----CCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE--ELRGAVVLIFANKQDLPG----ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+++++++..+..|+..+.... ...+.|+++|+||+|+.. ....++..+... ...+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 99999999999988755443332 235789999999999842 222333322221 11356899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++|+.+.+.+.+.
T Consensus 156 i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=182.78 Aligned_cols=160 Identities=24% Similarity=0.370 Sum_probs=128.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567999999999999999999999888765 56666643 34455544 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887775543 3579999999999997532 223322222 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 160 DAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=180.36 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=127.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+|+|++|+|||||++++.+..+.. +.+|.+..... +.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3577999999999999999999999888765 66676654443 3333 36899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
|+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999988888887765432 2468999999999997432 2233322221 1345679999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 030149 165 GLFEGLDWLSNTLKS 179 (182)
Q Consensus 165 gi~~l~~~l~~~~~~ 179 (182)
|+++++++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=180.41 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 3578999999999999999999999888765 55666643 3344443 46899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.++ ...++..+... ..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 9999999999999888888777554 3357999999999999643 22233333222 23568999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030149 167 FEGLDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=184.53 Aligned_cols=162 Identities=25% Similarity=0.365 Sum_probs=125.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCc-chhhhccCCCC
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTQ 86 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (182)
...+.++|+++|++|+|||||++++.++.+.. +.++.+. ....+...+ ..+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 44678999999999999999999999888765 5666663 344455544 689999999998887 78888999999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCC-
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKG- 163 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (182)
++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCCcCC
Confidence 999999999999999999998888776656789999999999996432 222222 222 223457999999999
Q ss_pred --CChHHHHHHHHHHHhh
Q 030149 164 --EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 --~gi~~l~~~l~~~~~~ 179 (182)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=181.83 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=130.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4577999999999999999999999888765 555655433 3344444 58999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHH
Confidence 99999999999999999888877765568999999999998643 23333333322 235679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 170 ~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 170 KVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-32 Score=187.29 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=124.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-E--EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-V--QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+..... + ......+.+|||+|++.+..++..+++.+|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3678999999999999999999999888766 57777755432 2 224578999999999999999999999999999
Q ss_pred EEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCcc-
Q 030149 90 YVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQW- 153 (182)
Q Consensus 90 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~- 153 (182)
+|+|+++++++.. ...|+..+.... .+.|+++|+||+|+.++ ...++..... ...++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCCC
Confidence 9999999999998 566666665442 58999999999999642 2222222221 22345
Q ss_pred EEEEecccCCCC-hHHHHHHHHHHHhhc
Q 030149 154 AIFKTSAIKGEG-LFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~~~~~S~~~~~g-i~~l~~~l~~~~~~~ 180 (182)
+++++||++|.| ++++|+.+.+.+...
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.3e-32 Score=181.33 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=128.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 567999999999999999999999888765 5667665443 3333 4578899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999998888888777554 3357899999999999643 2223332222 2245689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=180.82 Aligned_cols=161 Identities=27% Similarity=0.392 Sum_probs=125.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999888754 566666 3444555555 6899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.......+....+.. ..+++++++||++|.|+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999988888887775543 357899999999999533222222222221 1235799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
++++|.+.+.+
T Consensus 172 l~~~l~~~~~~ 182 (213)
T 3cph_A 172 IFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-32 Score=182.64 Aligned_cols=159 Identities=22% Similarity=0.359 Sum_probs=127.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+... ...+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 467999999999999999999999988765 6677764443 33443 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 999999999999888888777544 33578999999999997532 2222222221 224579999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-32 Score=182.67 Aligned_cols=160 Identities=20% Similarity=0.292 Sum_probs=125.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+ .....+..++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999888765 555555 3344455544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988888777554 2357999999999999642 2233332222 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-32 Score=180.36 Aligned_cols=159 Identities=20% Similarity=0.319 Sum_probs=127.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999888765 56666643 34444544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999998888887765442 368999999999999632 2223332222 2345789999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-32 Score=179.76 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc---CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3577999999999999999999999888655 56666533 3344433 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCC---CCHHHHHHHhccccccCCccEEEEeccc
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGA---LDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+++|+|++++.+++....|+..+..... ..+.|+++|+||+|+... ...++...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999998888887765432 257899999999999532 12233322221 1345679999999
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 030149 162 KGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~~~ 180 (182)
+|.|+++++++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=175.38 Aligned_cols=158 Identities=19% Similarity=0.327 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887765 56666633 3444444 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++....|+..+.... .+.|+++|+||+|+.++ ...++...... ..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999999998888888776554 57899999999998643 22333332221 234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=176.67 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcC-------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN------------------------------- 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+.... .+.+.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 567999999999999999999999988765 6666664433 333333
Q ss_pred --------eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 61 --------IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 61 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|+.+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999999888888776542 499999999999432
Q ss_pred -CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 133 -ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
....++..+... ..+++++++||++|.|+++++++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 223344433332 2356899999999999999999999988754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=172.96 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=125.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999887765 45555533 2334443 35689999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999999998888888776655557999999999998753222222222221 1245799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=180.45 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=123.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccc-----------ccccceeEEEEE-----EcCeEEEEEEcCCCCCCc
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVETVQ-----YNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~ 75 (182)
....+.++|+++|++|+|||||++.+.+.....+ .||.+.+..... .....+.+|||||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3446789999999999999999987765544333 234443332221 134689999999999999
Q ss_pred chhhhccCCCCeEEEEEeCC------CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSS------DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (182)
..+..+++.+|++|+|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 4456666666666552 23468999999999999877666666555443
Q ss_pred CCcc-EEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 150 NRQW-AIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 150 ~~~~-~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
.++ +++++||++|.|++++|++|.+.+.+.
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 344 799999999999999999999988764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-31 Score=176.26 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=118.2
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|.+|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34677999999999999999999999887655 445554332 3344444 5699999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988888877665544579999999999997532 3333333222 123569999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 030149 168 EGLDWLSNTLKSIG 181 (182)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (182)
+++++|.+.+.+.+
T Consensus 172 ~l~~~l~~~~~~~~ 185 (190)
T 3con_A 172 DAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-32 Score=183.65 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc-ccccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcc-hhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+.... ...++.+ .....+.+++ ..+.+|||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 357799999999999999999999754432 2333333 3344445544 5788999999988765 77778889999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCC
Confidence 99999999999999999999887665444579999999999996432 223332221 12246799999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
++++|+.+.+.+.+.+
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=180.93 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=117.5
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+....+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+++ ..+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 3445678999999999999999999999888754 56666633 34444543 6799999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC--------CCCHHHHHHHhccccccCCccEEEE
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG--------ALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
|++|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++.. .+. ...++++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA----MTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH----HHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-HHH----HHcCCeEEE
Confidence 9999999999999999888877766443 335789999999999852 11112221 111 223567999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|++|.+.+.++
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-32 Score=181.25 Aligned_cols=160 Identities=19% Similarity=0.332 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887765 56666643 34444544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.++. ..++..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888888776543 3579999999999986432 223322222 1234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 166 ~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 166 QLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877553
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=184.06 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=127.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE--c--C-eEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--N--N-IKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~--~--~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....++|+++|++|+|||||++++.++.+.. +.+|.+........ . . ..+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3577999999999999999999999887765 66777766555544 1 1 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL-DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
+|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...+.... .....+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVME----VLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHH----HTTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH----HHHHcCCcEEEEecCCCCCH
Confidence 99999999999999888887777554 33568999999999997531 11222222 22345678999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-32 Score=181.26 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=121.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+.+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+.. ....+.+|||||++.+..+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34677999999999999999999999888765 667777443 22333 3467899999999988775 5688999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecc-cCC
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSA-IKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~ 163 (182)
++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+. ...++..+... ..+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCcc
Confidence 999999999999999988888765532 257999999999999642 22233322222 22467999999 899
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++|+.|.+.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=180.85 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=121.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEc---CeEEEEEEcCCCCCCcc-hhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+....++.......+.++ ...+.+|||||++.+.. ++..+++.+|++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988877556666666566665 68899999999998887 78888999999999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhccc---------------------
Q 030149 91 VVDSSDTE-RLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|+++.. ++.....++...+.. ....+.|+++|+||+|+......+...+.+...
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99998853 455666666665443 223578999999999998765554443332210
Q ss_pred --ccc---------C--CccEEEEecccCC------CChHHHHHHHHHHH
Q 030149 147 --KIK---------N--RQWAIFKTSAIKG------EGLFEGLDWLSNTL 177 (182)
Q Consensus 147 --~~~---------~--~~~~~~~~S~~~~------~gi~~l~~~l~~~~ 177 (182)
... . ..++|++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 000 1 1678999999999 99999999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=183.57 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=122.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+|+|++|+|||||++++.+..+.. +.+|.+. ....+.+.+ ..+.+|||||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999988765 5566663 344455555 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...++..... ...+++++++||++|+|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888888775543 357899999999999642 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=185.48 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=127.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+|+|++|+|||||++++.+..+.. +.++.+.. ...+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 467999999999999999999999887655 55555533 333333 5688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999999888887777553 3468999999999998643 2222222221 2234679999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=176.80 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888765 56666643 44455544 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+.. ..++..+ +.. ...+.+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~---~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEK-FAQ---QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHH---TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-HHH---hcCCCeEEEEeCCCCCCHH
Confidence 99999999999988877666543 344579999999999996432 2233222 221 1235789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=173.65 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=122.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 467999999999999999999999887765 566665433 2344444 789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCC--------------CHHHHHHHhccccccCCcc-E
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGAL--------------DDAAVTEALELHKIKNRQW-A 154 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 154 (182)
|+|+++++++.... .|+..+.... ++.|+++|+||+|+.... ..++..+.. ...+. +
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcE
Confidence 99999999999887 5666655432 479999999999997531 111111111 11123 6
Q ss_pred EEEecccCCCChHHHHHHHHHHHh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
++++||++|+|++++|++|.+.+.
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998874
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-32 Score=179.03 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=123.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887754 56666644332 233 336789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|++++.+++....|+..+.... ...+.|+++|+||+|+..... ..+... +. ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEecCCCCcCHHH
Confidence 99999999988888877765542 224789999999999864322 222221 11 12246799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999877654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=179.24 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=122.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+....++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 44678999999999999999999999888765 566665433 3344444 5899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---------ccccccCCcc-EEEE
Q 030149 89 IYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---------ELHKIKNRQW-AIFK 157 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~ 157 (182)
++|+|+++++++.... .|+..+ .... ++.|+++|+||+|+.+.....+..... ........+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEV-KHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHH-HHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999885 444444 3322 479999999999997542111111000 0001111233 7999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|+++++++|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-32 Score=182.75 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+|+|++|+|||||++++.+..+.. +.+|.+ .....+...+ ..+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888765 556655 3344455554 78999999999888888889999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888888775543 367999999999999642 2223332222 2345689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=175.69 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=119.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3677999999999999999999999888765 556665433 2344444 68999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---------ccccCCcc-EEEEe
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL---------HKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (182)
+|+|+++++++.... .|+..+... .++.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999998884 455444332 247999999999999654211111111100 00111223 79999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|+++++++|.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=179.91 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=118.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+.++|+++|++|+|||||++++..+.+.. +.+|.+.. ...+..+ ...+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 445788999999999999999999999887765 55555432 2223333 4566799999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc---------cccc-cCCccEEE
Q 030149 88 IIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE---------LHKI-KNRQWAIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~---------~~~~-~~~~~~~~ 156 (182)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+.....+...... .... .....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999987 455554433 2 5799999999999875422111111100 0011 11234699
Q ss_pred EecccCCCChHHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++||++|+|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=186.32 Aligned_cols=160 Identities=23% Similarity=0.417 Sum_probs=126.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEEc------------CeEEEEEEcCCCCCCcchhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+. ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 567999999999999999999999887755 566666433 334443 57899999999999888999
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++|+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.. ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999999888887766554433679999999999996432 223322222 123467999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=180.46 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=119.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccccccccce--eEEEEEEcC--eEEEEEEcCCCCC-CcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGF--NVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
.+.++|+++|++|+|||||++++.+.. +....++.+. ....+.+++ ..+.+|||+|++. ...+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 566999999999999999999998644 3343344443 334455554 4678999999876 45566777889999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+|+|+|++++++|+....|+..+.......+.|+++|+||+|+.+. ...++. ..+. ...+++++++||++|+|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~a----~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA----VVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH----HHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHHH----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877765434457999999999999642 222221 1111 22346799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++|+.|.+.+...
T Consensus 190 v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 190 VKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987543
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=177.91 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=125.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 567999999999999999999999887765 56666644332 223 34589999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHHH
Confidence 9999999999888877766654322 24689999999999975322222222221 122457999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
+++|.+.+...
T Consensus 162 ~~~l~~~~~~~ 172 (199)
T 2gf0_A 162 FQELLTLETRR 172 (199)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999887543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=173.12 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=121.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.||.+.... .+.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999888765 6677664432 2333 34689999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCccEE
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|+++++++... ..|+..+... .++.|+++|+||+|+.+. ...++..+... .....++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH----HcCCcEE
Confidence 9999999999988 4565555433 257999999999999642 11222211111 1123579
Q ss_pred EEeccc-CCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAI-KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~-~~~gi~~l~~~l~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+.+
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 689999999999988754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=182.80 Aligned_cols=161 Identities=20% Similarity=0.305 Sum_probs=129.7
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+.+.++|+++|++|+|||||+++++.+.+.. +.+|.+.+.....+ ....+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 44678999999999999999999977665544 67777766554443 45789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888887653 4789999999999975432221 111223345689999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030149 168 EGLDWLSNTLKSI 180 (182)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (182)
++|++|.+.+...
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=175.33 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567999999999999999999999887765 556665332 233444 3567799999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---------hccccccCCc-cEEEEec
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---------LELHKIKNRQ-WAIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999887 4555554432 37999999999998653211111000 0000111123 3799999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|.|++++++.+.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=180.39 Aligned_cols=165 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3577999999999999999999999887755 556655332 233443 357999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHH---------hccccccCCcc-EEEEe
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEA---------LELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ 158 (182)
+|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.......+..+. .........+. +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999887 4555554332 57899999999999754211111100 00111112233 79999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|++++|+.|.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=178.03 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE---EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. +.+|.+.... .+......+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4678999999999999999999999887655 5555542221 12224566789999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCC------------HHHHHHHhccccccCCc-cEE
Q 030149 90 YVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALD------------DAAVTEALELHKIKNRQ-WAI 155 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (182)
+|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+... .++..+ +. ...+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LK----KLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HH----HHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HH----HHcCCCEE
Confidence 999999999999887 4555554332 4799999999999864321 111111 11 1123 379
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|+|++++|+.|.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=180.12 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=96.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccc--eeEEEEEEc----CeEEEEEEcCCCCCCcchhhhccCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
.+.++|+++|++|+|||||++++.+. .+.. +.+|.+ .....+.+. ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56789999999999999999999988 6554 666766 444455555 56899999999999999999999999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcc--cCCCeEEEEeecCCCCC-C--CCHHHHHHHhccccccCCccEEEEecc
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEE--LRGAVVLIFANKQDLPG-A--LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
|++|+|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+ . ...++..+... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999988888766533 25799999999999975 2 22233333222 23468999999
Q ss_pred cC-CCChHHHHHHHHHHHhh
Q 030149 161 IK-GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~gi~~l~~~l~~~~~~ 179 (182)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999988764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=176.74 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=122.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. +.||.+.... .+..+ ...+.+|||||++.+..++..+++.+|++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 577999999999999999999999888755 6667664332 33343 3689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCC----------CHHHHHHHhccccccCCc-cEEEEe
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGAL----------DDAAVTEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
|+|+++++++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..+.. ...+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEc
Confidence 99999999999887 5665554432 479999999999986531 112222111 1122 479999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|+|++++|++|.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999988654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=173.01 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=117.4
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. +.+|.+... ..+..++ ..+.+|||||++.+..++..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34678999999999999999999999888655 566666433 2344444 5778999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCcc
Q 030149 89 IYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (182)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+... ...++...... .....
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE----EIKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH----hcCCc
Confidence 9999999999999887 5666554432 47999999999998642 11111111111 11123
Q ss_pred EEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+++++||++|.|++++|++|.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999887653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=169.79 Aligned_cols=162 Identities=20% Similarity=0.172 Sum_probs=122.1
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.++|+++|++|+|||||++++.+..+.. +.+ +.......+.+.+..+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45788999999999999999999999887765 333 334555667778899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc--ccCC--ccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK--IKNR--QWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~S~~~~~g 165 (182)
+|+|++++..... ...+... ...+.|+++|+||+|+... ..+++...+.... .... ..+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~----~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHA----KAANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHH----GGGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHH----HhCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999987532221 1222222 2357899999999999764 3344444333221 1111 26899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999987764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=173.61 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=121.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 567999999999999999999999988765 5667664432 2333 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhhcccCCCeEEEEeecCCCCCC--------------CCHHHHHHHhccccccCCccEE
Q 030149 91 VVDSSDTERLVIA-KDEFHAILEEEELRGAVVLIFANKQDLPGA--------------LDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|+++++++..+ ..|+..+.... ++.|+++|+||+|+... ...++..+... .....++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH----HcCCCEE
Confidence 9999999999988 45666554432 47999999999999642 11122211111 1113579
Q ss_pred EEeccc-CCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAI-KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~-~~~gi~~l~~~l~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+.+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999988754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=176.16 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=114.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee--EEEEE---EcCeEEEEEEcCCCCCCcchh---hhccC
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQ---YNNIKFQVWDLGGQTSIRPYW---RCYFP 83 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~--~~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 83 (182)
..+.+.+||+++|++|+|||||++++.+........+.+.. ..... .....+.+|||||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34578899999999999999999988775433322222222 22222 245899999999999987776 78899
Q ss_pred CCCeEEEEEeCCCc--chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhcccccc----CCcc
Q 030149 84 NTQAIIYVVDSSDT--ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIK----NRQW 153 (182)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~ 153 (182)
.+|++|+|+|++++ +++.....|+..... ...+.|+++|+||+|+..+.. ...+.......... ..++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 566666666666532 235899999999999875311 12232222222222 5678
Q ss_pred EEEEecccCCCChHHHHHHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+|+++||++ .|++++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998865
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-32 Score=184.76 Aligned_cols=163 Identities=23% Similarity=0.312 Sum_probs=120.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+.+++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887765 455544 4455556655 67999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+....... ...........+++++++||++|.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVD---YTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCC---SCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCC---HHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999998888777543 33579999999999996432110 00111112233567999999999999999
Q ss_pred HHHHHHHHhhcC
Q 030149 170 LDWLSNTLKSIG 181 (182)
Q Consensus 170 ~~~l~~~~~~~~ 181 (182)
|++|.+.+.++.
T Consensus 187 ~~~l~~~l~~~~ 198 (199)
T 3l0i_B 187 FMTMAAEIKKRM 198 (199)
T ss_dssp HHHHTTTTTTTC
T ss_pred HHHHHHHHHHhc
Confidence 999998887654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=173.24 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=115.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCC-CcchhhhccCCCCe
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTQA 87 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
.+.++|+++|++|+|||||++++.+.. +....++.+ .....+.+++ ..+.+|||+|.+. ...+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567999999999999999999998633 334333344 2334455554 4668899999876 45566777888999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|+|++++++|.....|+..+.......+.|+++|+||+|+.+. ...++. ..+ ....+++++++||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 9999999999999999888877765433457899999999998632 122211 111 122345799999999999
Q ss_pred hHHHHHHHHHHHhh
Q 030149 166 LFEGLDWLSNTLKS 179 (182)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (182)
++++|+.+.+.+..
T Consensus 159 v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 159 VKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=173.56 Aligned_cols=162 Identities=16% Similarity=0.253 Sum_probs=116.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCcc-cccccceeEEEEEE-------cCeEEEEEEcCCCCCCcchhhhccCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTQ 86 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
.++|+++|++|+|||||++++.+. .+.. +.+|.+........ ....+.+|||+|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3433 67777766544432 4678999999999888888888888999
Q ss_pred eEEEEEeCCCc-chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccE----EEEeccc
Q 030149 87 AIIYVVDSSDT-ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWA----IFKTSAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~S~~ 161 (182)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+...................+++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888888775542 47899999999999643211111111122222233343 9999999
Q ss_pred CCC-ChHHHHHHHHHHHhhc
Q 030149 162 KGE-GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 162 ~~~-gi~~l~~~l~~~~~~~ 180 (182)
+|. |++++++.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999888754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=170.27 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=108.3
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEcCeEEEEEEcCC----------CCCCcchh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGG----------QTSIRPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g----------~~~~~~~~ 78 (182)
....+.++|+++|++|+|||||++++.+..+.. +.++.+.+.. .... +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 344678999999999999999999999887433 4554443322 2222 34799999999 44455556
Q ss_pred hhccCCC---CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEE
Q 030149 79 RCYFPNT---QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 79 ~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+++.+ |++++|+|++++.++.... +...+. ..+.|+++|+||+|+.+........+............++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLK---YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH---HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHH---HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 6666555 9999999998877665432 122222 2578999999999997654443333333322223456789
Q ss_pred EEecccCCCChHHHHHHHHHHHh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+++||++|.|+++++++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=170.73 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 82 (182)
.+.++|+|+|++|+|||||++++.+..+.. ..+ |.......+...+..+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 578999999999999999999999887653 222 444555666668899999999998421 11223446
Q ss_pred CCCCeEEEEEeCCCcchHHH--HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH-HHHHHhccccccCCc--cEEEE
Q 030149 83 PNTQAIIYVVDSSDTERLVI--AKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA-AVTEALELHKIKNRQ--WAIFK 157 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 157 (182)
..+|++|+|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+..... +...... ......+ +++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 78899999999999877652 22344444322 2378999999999997543221 1111111 1111222 68999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|++|.+.+.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-31 Score=181.82 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=120.9
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEE--EcCeEEEEEEcCCCCCCcchhhhccCCCCe
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTQA 87 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
++..+.++|+++|++|+|||||++++.++.+.. +.+|.+... ..+. .....+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445788999999999999999999999877655 455554222 1222 245677899999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH---------HHHHHhccccccCCcc-EEE
Q 030149 88 IIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDA---------AVTEALELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (182)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+..... .+............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999998887 454444332 2 378999999999996532111 1111111222233344 799
Q ss_pred EecccCCCChHHHHHHHHHHH
Q 030149 157 KTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~ 177 (182)
++||++|.|++++++.|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=168.23 Aligned_cols=163 Identities=23% Similarity=0.203 Sum_probs=113.3
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEE-EEcCeEEEEEEcCC----------CCCCcchhhh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV-QYNNIKFQVWDLGG----------QTSIRPYWRC 80 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g----------~~~~~~~~~~ 80 (182)
......++|+++|++|+|||||++++.+.......++.+.+.... ...+.++.+||||| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 344677899999999999999999999988666666555333222 22456789999999 3344445555
Q ss_pred ccCCC---CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 81 YFPNT---QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 81 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+++.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+..+.......+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 55544 999999999776443322 11122222 37899999999999765444444444333222334567999
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+||++|+|+++++++|.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=176.29 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---hhhhccCCCCeEEEE
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTQAIIYV 91 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (182)
||+++|+.|+|||||++++.++.... +.||++.....+. ...++++|||+|++++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654432 5678887776653 458999999999999975 468899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCH----HHHHHHhccccccC----CccEEEEeccc
Q 030149 92 VDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDD----AAVTEALELHKIKN----RQWAIFKTSAI 161 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~S~~ 161 (182)
+|++++ +.....||...+.. ...++.|+++++||+|+..+... +++....+...++. .+++|+++||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44444455443322 12357999999999999754321 34444444444443 57899999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+ .+|.++|..+.+.+.
T Consensus 158 d-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp S-SHHHHHHHHHHTTSS
T ss_pred C-CcHHHHHHHHHHHHH
Confidence 8 589999998877553
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=161.66 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=111.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
.+..+|+++|++|+|||||++++.+..... ..+ |.+.....+.+++..+.+|||||+...... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 356799999999999999999999876432 222 334555667778888999999998764321 12357
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.++.. ..|+..+... ...+.|+++|+||+|+.+... ......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 4566555443 235789999999999853211 11222456899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|++++|+.|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=175.10 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=121.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--Cc--ccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----cchhhhccCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE--VV--STIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (182)
..+||+++|++|+|||||++++.++. +. .+.+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998773 32 267788888887776 6789999999999887 67788889999
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhh-cccCCCeEEEEeecCCCCCCCCHHH---HHHHhccccccCC---ccEEEEe
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEE-EELRGAVVLIFANKQDLPGALDDAA---VTEALELHKIKNR---QWAIFKT 158 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (182)
|++|+|+|+++++++..+..|...+... ...++.|+++|+||+|+.++....+ ............. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887664433322 1135799999999999975322221 1111112222222 3789999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~ 177 (182)
||++ .|+.++|..+...+
T Consensus 162 Sa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTT
T ss_pred eecC-ChHHHHHHHHHHHH
Confidence 9999 88999998887644
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=159.20 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
++|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||.... ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887543 222 334555666778889999999998763 345566789999
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (182)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. ++ .. ... ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~----~~-~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LY----LG-PLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG----CG-GGG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--Hh----HH-HHH-hCCCCCeEEEecccCCC
Confidence 999999998864432 2344444333 478999999999996431 11 11 111 2233 599999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=160.66 Aligned_cols=148 Identities=30% Similarity=0.320 Sum_probs=106.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--C
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--N 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (182)
+.++|+++|++|+|||||++++.+..+.. ..| |.......+.+++..+.+|||||++.+. .+...+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 46899999999999999999999876432 334 3344455666778999999999988764 23345554 7
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+.... ..+.+.+. .+++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEc
Confidence 999999999987543 3345555433 378999999999984211 11222222 1356999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030149 161 IKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~ 178 (182)
++|+|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999988763
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=169.37 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=120.6
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEc-CeEEEEEEcCCCCCCc----------c
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYN-NIKFQVWDLGGQTSIR----------P 76 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~ 76 (182)
..+.+.-.|+++|.+|+|||||+|++++.++....+ |........... +..+.+|||||..... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345778899999999999999999999988764333 333444455566 8999999999987654 4
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC-CCCCHHHHHHHhccccccCCccEE
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-GALDDAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
.+..+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+. ...........+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 556778899999999999998877766554554433 478999999999997 3333333333333221 123569
Q ss_pred EEecccCCCChHHHHHHHHHHHhh
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+++||++|.|++++++.+.+.+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999988754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=170.99 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=120.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|.+|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 566999999999999999999999887755 556665332 2344444 456699999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---------ccccccCCc-cEEEEec
Q 030149 91 VVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---------ELHKIKNRQ-WAIFKTS 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+..... ........+ .+++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999998887 4555544332 389999999999986431111110000 000111123 3799999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++|+.|.+.+.+
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=165.00 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCC-----------CCCCcchhhhccCC-
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (182)
++|+++|++|+|||||++++.+..+.. +.|+.......+.+. .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887654 455554444444444 789999999 34445555556655
Q ss_pred CCeEEEEEeCCCcchHHHHH-HHHHH--------HHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccC--Ccc
Q 030149 85 TQAIIYVVDSSDTERLVIAK-DEFHA--------ILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKN--RQW 153 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~ 153 (182)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... .+...+......... ...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence 66555555555566776653 33321 2233334689999999999997643 222222111111110 124
Q ss_pred EEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
+++++||++|.|++++|++|.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 5899999999999999999999887654
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-28 Score=168.93 Aligned_cols=162 Identities=11% Similarity=0.088 Sum_probs=114.6
Q ss_pred cCCcccEEEEEcCC---------CCCHHHHHHHHhcC---CCcc-ccccc-cee--EE----------------EEEEcC
Q 030149 13 FGNKEARILVLGLD---------NAGKTTILYRLQMG---EVVS-TIPTI-GFN--VE----------------TVQYNN 60 (182)
Q Consensus 13 ~~~~~~~v~v~G~~---------~~GKtsli~~~~~~---~~~~-~~~t~-~~~--~~----------------~~~~~~ 60 (182)
...+.+||+++|.+ |+|||||++++.+. .+.. +.+|. +.. .. .++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34677999999999 99999999999984 4433 44443 211 00 122355
Q ss_pred eEEEEEE-----------------------cCCCCCCcchhhhccC---------------------CCCeEEEEEeCCC
Q 030149 61 IKFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTQAIIYVVDSSD 96 (182)
Q Consensus 61 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 96 (182)
..+.+|| ++|++.+..++..+++ ++|++|+|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 6667767777777776 7999999999999
Q ss_pred c--chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 97 T--ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
+ ++++.+..|+..+.......+.|+++|+||+|+... ..+.+ .........+++++++||++|.|++++|++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~-~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRD-AHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHH-HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHH-HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 899999988888876544568999999999998642 22211 11111112356799999999999999999999
Q ss_pred HHHh
Q 030149 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=159.87 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=122.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce--eEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|||||||++++.+..+.. +.||.+. ....+.+.+ ..+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999887755 5666653 344555655 56789999999988888888889999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+.+.. ...+.. .+ ...+++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HH----HHHcCCeEEEEeCCCCCCHH
Confidence 999999998888877777665432 23578999999999996422 222222 22 22345779999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=165.86 Aligned_cols=149 Identities=23% Similarity=0.262 Sum_probs=111.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------hhhcc--C
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~ 83 (182)
.+.++|+++|++|+|||||++++.+..+.. ..| |.......+.+.+..+.+|||||...+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 567899999999999999999999877543 333 444555566667899999999999877652 24444 6
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEec
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..++.++.. .+.|+++|+||+|+.+. .+.+.+.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 89999999999987543 234444443 37999999999998432 1122332222 46799999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 030149 160 AIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~ 178 (182)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=163.77 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=108.4
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCC-ccccc----ccceeEEEEE-EcCeEEEEEEcCCCCCC----------c
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIP----TIGFNVETVQ-YNNIKFQVWDLGGQTSI----------R 75 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~----t~~~~~~~~~-~~~~~~~~~D~~g~~~~----------~ 75 (182)
......++|+++|.+|+|||||++++.+... ....+ |.......+. ..+..+.+|||||.... .
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3446779999999999999999999998873 23222 2233333333 34689999999995432 3
Q ss_pred chhhhccCC---CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc---
Q 030149 76 PYWRCYFPN---TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK--- 149 (182)
Q Consensus 76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 149 (182)
.....+++. +|++++|+|+++..+.. ...++..+ .. .+.|+++|+||+|+...................
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 333344443 78899999998754321 22233322 22 478999999999997543322222222211111
Q ss_pred ---CCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 150 ---NRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 150 ---~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
....+++++||++|.|+++++++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3567899999999999999999999987653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=164.56 Aligned_cols=156 Identities=17% Similarity=0.078 Sum_probs=111.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc--cc--ccceeEEEEEEcCeEEEEEEcCCCCC--------Ccchhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--IP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
.+..+|+++|++|+|||||+|++++.++... .| |...........+..+.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887542 22 33333334455789999999999876 344556778
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+..... .+.+..... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH--HHHHHHHHh---cCcCcEEEEeCCC
Confidence 9999999999998765433 344443333321 3799999999999975422 122222221 2335699999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=166.43 Aligned_cols=144 Identities=20% Similarity=0.199 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc----------hhhhcc--
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|.+|||||||+|++.+..... ..| |.......+.+.+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999876433 334 44455666777889999999999887764 445556
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEe
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+.+|++|+|+|+++.++...+. ..+. ..+.|+++|+||+|+.+.. ..+.+.+. .+++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~---~~l~----~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT---SQLF----ELGKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH---HHHT----TSCSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHH---HHHH----HcCCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEE
Confidence 8899999999998865443322 2222 2379999999999985321 12222222 24679999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030149 159 SAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~ 176 (182)
||++|.|++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=156.61 Aligned_cols=151 Identities=28% Similarity=0.281 Sum_probs=112.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccc--cceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP-- 83 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (182)
.+.++|+++|++|+|||||++++.+..+.. ..|+ .......+.+.+..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 567899999999999999999999866433 3443 335556677788999999999998774 33445553
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEEEec
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|..+ ++....|+..+.. .+.|+++|+||+|+.... ..+++.+. .+++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEE
Confidence 5899999999765 4455556655543 478999999999984321 22222222 235699999
Q ss_pred ccCCCChHHHHHHHHHHHhhc
Q 030149 160 AIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~~ 180 (182)
|++|.|++++++++.+.+.+.
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=153.43 Aligned_cols=158 Identities=18% Similarity=0.291 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEcCe--EEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++|+++|++|||||||++++.+..+.. +.||.+.. ...+.+++. .+.+||++|.+.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 356899999999999999999999887754 66777643 445556554 5667999999998888888899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+|+|..+..+++.+..|+..+... ...+.|+++++||+|+.+... .......+ ...+++.++++|++++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence 999999998888777776655332 235789999999999864211 11222222 233567799999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=168.77 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc----------hhhhc-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCY- 81 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~- 81 (182)
++++|+++|.+|+|||||+|++.+..... ..| |.......+.+.+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 57899999999999999999999877532 333 33445555666788999999999887662 12222
Q ss_pred -cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC----CHHHHHHHhccccccCCccEEE
Q 030149 82 -FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL----DDAAVTEALELHKIKNRQWAIF 156 (182)
Q Consensus 82 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+.+|++++|+|+++.++... +...+.. .+.|+++|+||+|+.+.. ..+.+.+. .+++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEE
Confidence 278999999999987654333 3333332 279999999999985321 12222222 246799
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=173.16 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=114.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Ccchhh-h
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS----------IRPYWR-C 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~-~ 80 (182)
..++|+++|++|+|||||+|++++..... ..+ |.+.....+.+++..+.+|||||+.+ +..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 56899999999999999999999887643 222 33344456677888999999999732 222222 4
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999998876664 34443332 5799999999999976533 23344444333333456789999
Q ss_pred cccCCCChHHHHHHHHHHHhh
Q 030149 159 SAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=169.48 Aligned_cols=155 Identities=22% Similarity=0.245 Sum_probs=99.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcchh--------hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|.+|+|||||+|++.+.... ...+ |.......+.+++..+.+|||||..++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 35588999999999999999999987643 2223 4445556677899999999999987655432 3467
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
+.+|++++|+|++++.++.... .+..++... .+.|+++|+||+|+......+. +.+... ...+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELT-EIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhH-HHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECC
Confidence 8999999999999988775322 222222322 2799999999999976533221 112111 114699999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
|+|+++++++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999886
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=154.23 Aligned_cols=151 Identities=25% Similarity=0.232 Sum_probs=112.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcc------hhhhcc--CC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (182)
+.++|+++|++|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||...+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 56899999999999999999999877633 344 34455566777889999999999887765 455555 78
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.+ ....++..+... ...|+++|+||+|+.+. .....+.+.+ +++++++||
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999987753 334444554443 23899999999997421 1223333322 367999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.|++++++.+.+.+...
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=162.72 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCc------chhhhccC--C
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--N 84 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (182)
..++|+++|++|+|||||++++.+... ....| |.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998653 33334 33333333333 6789999999998775 34455554 6
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC----CCHHHHHHHhccccccCCccEEEEecc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA----LDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+|++++|+|+++.++. ..|..++.. .+.|+++|+||+|+... .+.+.+.+.+ +++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence 9999999999876443 334444433 47999999999997421 1222332222 467999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030149 161 IKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~ 178 (182)
++|.|++++++.+.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=175.79 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=110.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEE--------E----cCeEEEEEEcCCCCCCcchhhh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+.+||+++|.+|+|||||++++.+..+.. +.+|.+....+.. . ....+.+|||||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999999999888765 6678776665442 1 2589999999999999999998
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++|+|+|+++.+. ...|+..+.... .+.|+++|+||+|+.+... .++..+... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 9999999999999876543 455555554432 3689999999999975432 333333222 234569999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|.|++++++.+.+.+.+.
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999987653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=158.54 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCCcc---------hhhhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 82 (182)
...++|+++|.+|+|||||++++.+..... ...|.+.....+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999876432 23355666666667788999999999754321 112334
Q ss_pred CCCCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 83 PNTQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+......++..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 56776777777655432 79999999999997532222222211 123567999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=164.99 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=115.2
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccce-------------------eEEEEEEcCeEEEEEEcC
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGF-------------------NVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~-------------------~~~~~~~~~~~~~~~D~~ 69 (182)
..++.++|+++|++++|||||+++|.+........ +.+. ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34678999999999999999999998754322100 1000 000001122789999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc--c
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH--K 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--~ 147 (182)
|++++...+..++..+|++++|+|+++..++.....++...... ...|+++|+||+|+.+.....+..+.+... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877666666666544332 236899999999997543222222222111 1
Q ss_pred ccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 148 IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.....++++++||++|.|++++++.|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12236689999999999999999999987643
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=158.68 Aligned_cols=119 Identities=26% Similarity=0.382 Sum_probs=96.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC----C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+.. +.++.+.. +....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4677999999999999999999999887654 33333221 266789999999999998888888876 8
Q ss_pred CeEEEEEeCC-CcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCCCHH
Q 030149 86 QAIIYVVDSS-DTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGALDDA 137 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~~~~ 137 (182)
|++|+|+|++ +++++.....|+..+..... ..+.|+++|+||+|+.......
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 9999999999 88899999888888876532 3689999999999998765543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=169.11 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=114.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCC----------CCCCcchhh-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (182)
...++|+++|.+|+|||||++++.+..... ..+ |.......+...+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 457999999999999999999999776332 222 33344456677888999999999 444444433
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..+ ....++...... .+.|+++|+||+|+.+... .++..+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 36788999999999987543 222333333332 5799999999999975432 2444444443333334578999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++|+.+.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=158.55 Aligned_cols=134 Identities=21% Similarity=0.326 Sum_probs=108.0
Q ss_pred cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhccc
Q 030149 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
||.|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46677777788889999999999999999999999999999999999998 56799999999999876666
Q ss_pred CCCeEEEEeecCCCCC-----------------CCCHHHHHHHhccc----cc--cCCccEEEEecccCCCChHHHHHHH
Q 030149 117 RGAVVLIFANKQDLPG-----------------ALDDAAVTEALELH----KI--KNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~-----------------~~~~~~~~~~~~~~----~~--~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
.+.|+++++||+|+.+ +...++..+..... .. ....+.+++|||++++||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 12333433333211 10 1356789999999999999999999
Q ss_pred HHHHhhc
Q 030149 174 SNTLKSI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=165.17 Aligned_cols=149 Identities=22% Similarity=0.306 Sum_probs=112.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCC-CCcc--------hhhhccC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYFP 83 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|++.+.+.. ...| |.+.....+.+++..+.+|||||.. +... ....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 489999999999999999999987643 2223 5556677788899999999999987 5432 2345688
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++|+|+|++++.++... ..+ ..+ .++|+++|+||+|+.+....+++.+.. ....+++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~------~~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKL------GTDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHH------TCSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHh------cCCCcEEEEECCCC
Confidence 89999999999988776543 222 221 378999999999997654444443322 12346999999999
Q ss_pred CChHHHHHHHHHHHh
Q 030149 164 EGLFEGLDWLSNTLK 178 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~ 178 (182)
+|++++++.|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998754
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=166.32 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=109.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCe-EEEEEEcCCCCCCcch-------hhhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRPY-------WRCY 81 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~ 81 (182)
..+.++|+++|++|+|||||++++.+..+.. ...|.......+.+.+. .+.+|||||+.++... +..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 3567999999999999999999999887643 22244556666676554 9999999998876544 3457
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++.+|++|+|+|+... .....|+..+.. .+.|+++|+||+|+...... +..+.+. ...+++++++||+
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECC
Confidence 8899999999998333 223444444433 37999999999999866543 2333332 2335679999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|.|++++++.|.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILP 195 (423)
T ss_dssp CTTSTTTHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999998873
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=159.27 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCC----CCCcchhhhc---cCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCY---FPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~----~~~~~~~~~~---~~~~d 86 (182)
.+|+++|.+|+|||||++++.+.+... ...|...+...+.+.+ ..+.+|||||. .....+...+ ++.+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 479999999999999999998766432 2345566666677765 89999999994 3333344444 44599
Q ss_pred eEEEEEeCCC---cchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSD---TERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
++|+|+|+++ +++++....|...+..... ..++|+++|+||+|+... ++..+.+..... ...+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~--~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEKLT--DDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCC--SCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC---HHHHHHHHHHhh--cCCCEEEEECCC
Confidence 9999999998 7788888777777655421 257999999999999743 222222221111 115699999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 030149 163 GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~~ 180 (182)
++|++++++.|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999998764
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=152.14 Aligned_cols=135 Identities=24% Similarity=0.332 Sum_probs=108.6
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC----------CCcchHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS----------SDTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~ 115 (182)
.||+|.....+.+++..+++|||+|++.++..|..++++++++|+|+|+ ++..++.....++..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 4567888888888999999999999999999999999999999999955 467889999999999988777
Q ss_pred cCCCeEEEEeecCCCCC------------------CCCHHHHHHHhcc-----ccccCCccEEEEecccCCCChHHHHHH
Q 030149 116 LRGAVVLIFANKQDLPG------------------ALDDAAVTEALEL-----HKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
..+.|+++++||+|+.+ +.+.++..+.+.. .......+.++++||++++||+++|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 77899999999999843 1233333332211 112345677999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=155.72 Aligned_cols=132 Identities=27% Similarity=0.348 Sum_probs=98.2
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....++..+.+.....
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4566666777889999999999999999999999999999999999999 779999999999998776667
Q ss_pred CCeEEEEeecCCCCC------------------CCCHHHHHHHhccc---ccc---CCccEEEEecccCCCChHHHHHHH
Q 030149 118 GAVVLIFANKQDLPG------------------ALDDAAVTEALELH---KIK---NRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~------------------~~~~~~~~~~~~~~---~~~---~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
+.|+++++||+|+.+ +...++........ ... ...+.+++|||++++||+++|+.+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999852 12334443322110 011 345779999999999999999999
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=151.24 Aligned_cols=156 Identities=19% Similarity=0.102 Sum_probs=108.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCC---------CCcchhhhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQT---------SIRPYWRCY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 81 (182)
.+..+|+++|++|+|||||+|++++.++....+ |.......+..++..+.+|||||.. .+......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456689999999999999999999887643222 2233344455678999999999987 233445667
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
++.+|++++|+|+++ +.....++...+. ..+.|+++++||+|+... ...+.+.............++++||+
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECC
Confidence 889999999999976 2233334433332 247899999999999752 23332222211111111269999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|.|++++++.+.+.+.
T Consensus 158 ~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999987654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=164.02 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCCCC--------CCcchhhhccCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPN 84 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 84 (182)
..+|+++|.+|+|||||+|++.+.......++.+.+ ...+.+.+..+.+|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987766555544443 33444467899999999985 445566777889
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (182)
+|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+.... . .... .. ..++ +++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~----~~~~-~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--A----NIYD-FY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----------CCCS-SG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--h----hHHH-HH-HcCCCCeEEEeCcCC
Confidence 999999999988765433 344444433 578999999999986431 0 1111 11 1122 5899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|+.++++.+.+.+.+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988763
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=159.77 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=110.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch------------hh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (182)
..++|+++|++|+|||||+|++.+..... ..+ |.......+.+++..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999876533 222 333445567778889999999997432221 12
Q ss_pred hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEE
Q 030149 80 CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++++|+.+..+... ..+...+. ..+.|+++|+||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35677899999999987765543 22223222 25799999999999975422 3334333333333334567999
Q ss_pred ecccCCCChHHHHHHHHHHHhhc
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+||++|.|++++++.+.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=157.27 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|+|||||+|++.+..... ..| |.+.....+.+.+..+.+|||||.+.. ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 479999999999999999999877543 222 444556677888999999999997642 3345677899
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCcc-EEEEecccCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQW-AIFKTSAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (182)
+|++++|+|+.+..+... .++...+.. .++|+++|+||+|+.+.. ..+....+. ..++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 999999999987654332 333333332 378999999999974210 111101111 1122 4899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|++++++.+.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988864
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-25 Score=165.26 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC----Cc----c--cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE----VV----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~----~~----~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
++.++|+++|++++|||||+++|.+.. .. . ...|.......+.+.+..+.+|||||++++...+...+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 578999999999999999999998766 21 1 2235555556677788999999999999988888888999
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc---cCCccEEEEeccc
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI---KNRQWAIFKTSAI 161 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~S~~ 161 (182)
+|++|+|+|+++... ......+. .+.. .+.|+++++||+|+.++...+...+.+..... .....+++++||+
T Consensus 97 aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 999999999987321 11122222 2222 36888999999999753222222222221110 1125679999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|+|++++++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999998764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=161.08 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=102.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|++|+|||||+|++.+.... ...+ |.......+.+++..+.+|||||..+.... ...+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4578999999999999999999876543 2223 333555567778999999999997654332 233678
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+....... .... .....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCCC
Confidence 8999999999998766443 2333322 247999999999997542211 1111 113457999999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 030149 164 EGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~~ 180 (182)
.|++++++.|.+.+...
T Consensus 369 ~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 369 QGIDSLETAILEIVQTG 385 (462)
T ss_dssp BSHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999987653
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=156.73 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=103.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----ccc--ccceeEEEEEE---------------c--------CeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIP--TIGFNVETVQY---------------N--------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (182)
+.+.++|+++|+.++|||||+++|.+..... ..+ |++........ . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998543221 223 55433332222 0 16899
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH----HHHH
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD----AAVT 140 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~----~~~~ 140 (182)
+|||||++.+...+...+..+|++|+|+|+++..........+..+ ... ...|+++++||+|+.+.... +++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888899999999998653222222222222 221 23589999999999764321 2333
Q ss_pred HHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 141 EALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+.+... .....+++++||++|+|+++|++.|.+.+.
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332211 124567999999999999999999998765
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-26 Score=171.19 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=113.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++++|||||+++|.+..+.. ..+ |.......+.. .+..+.+|||||++.+..++..+++.+|++|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 356899999999999999999998765543 222 33333333333 45689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC---HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD---DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
|+|+++...... ...+... ...+.|+++++||+|+..... ..++..............+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt-~e~l~~~----~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHA----KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHH----HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHH-HHHHHHH----HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999988654322 2223222 234789999999999864321 12222211111111235689999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++++.+...+..
T Consensus 157 eLle~I~~l~~~ 168 (537)
T 3izy_P 157 ALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHhhhc
Confidence 999999987653
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=159.62 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=88.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------------------CCcc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+.. .... ...|.......+.+.+..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999611 1111 1225556677788899999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++...+..+++.+|++|+|+|+++..+.... ..|..... .+.|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999887654443 33333322 47899999999999654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=156.90 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=109.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc----ccc--ccceeEEEEEEc-----------------------CeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIP--TIGFNVETVQYN-----------------------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (182)
+...++|+++|++++|||||+++|.+..... ..+ |+........+. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4677999999999999999999998543211 223 554443333220 16899
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
+|||||++++.......+..+|++|+|+|+++..........+..+ ... ...|+++++||+|+.+.....+..+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999988888777888899999999998653122222222222 211 2358999999999975422111111111
Q ss_pred ccc--ccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 145 LHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 145 ~~~--~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
... ......+++++||++|.|+++|++.|.+.+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 111 1124578999999999999999999988664
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=161.92 Aligned_cols=156 Identities=22% Similarity=0.180 Sum_probs=108.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc-----cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQ----------------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (182)
.+.++|+++|++++|||||++++.+..+..+. ++.+....... +....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876544322 24443333221 1122699999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCC---cchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--------------H
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSD---TERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--------------D 136 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--------------~ 136 (182)
|..++..+++.+|++|+|+|+++ ++++.... .+. ..+.|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999988999999999999988 44433322 221 24789999999999964211 0
Q ss_pred H-----------HHHHHhccccc----------cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 137 A-----------AVTEALELHKI----------KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+ ++...+..... .....+++++||++|.|+++++++|...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111111111 123568999999999999999999998765
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=154.58 Aligned_cols=149 Identities=9% Similarity=0.049 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|. .+..|++.....+...+..+.+|||||++++.......++.+|++|+|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 99999999999999999998 44556666666677788899999999999998888888899999999999 43 3
Q ss_pred hHHHHHHHHHHHHhhcccCCCeE-EEEee-cCCCCCCCCHHHHHHHhccccc--cCCccEEEE--ecccC---CCChHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVV-LIFAN-KQDLPGALDDAAVTEALELHKI--KNRQWAIFK--TSAIK---GEGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~S~~~---~~gi~~l 169 (182)
.+.....++..... .+.|. ++++| |+|+ ++...++..+.+..... ....+++++ +||++ ++|++++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 34444444444322 35666 89999 9999 43211222122221111 123578999 99999 9999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
++.|.+.+..
T Consensus 171 ~~~l~~~~~~ 180 (370)
T 2elf_A 171 KARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 9999988754
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-24 Score=157.97 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=104.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|+...... ...|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 567999999999999999999995432100 1124445555566688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcch---HH---HHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTER---LV---IAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
..+.+|||||++++...+..++..+|++|+|+|+++... ++ .....+... .. .+.| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCccc
Confidence 899999999999999999999999999999999987532 11 122222222 11 3556 9999999999643
Q ss_pred CC----HHHHHHHh----ccccccC-CccEEEEecccCCCChHHHHH
Q 030149 134 LD----DAAVTEAL----ELHKIKN-RQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 134 ~~----~~~~~~~~----~~~~~~~-~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.. .+++.+.+ ....... ..++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 11222221 1111111 257899999999999999655
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-24 Score=143.65 Aligned_cols=126 Identities=29% Similarity=0.425 Sum_probs=97.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCC----C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+... .++.+. .+....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 36779999999999999999999998775442 222222 2267889999999999888877777665 8
Q ss_pred CeEEEEEeCC-CcchHHHHHHHHHHHHhhcc---cCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 86 QAIIYVVDSS-DTERLVIAKDEFHAILEEEE---LRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
|++|+|+|++ +++++.....|+..+..... ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 9999999999 88899888888888776532 25799999999999987766666655544
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=150.33 Aligned_cols=158 Identities=20% Similarity=0.135 Sum_probs=107.3
Q ss_pred cE-EEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCC---------CcchhhhccCC
Q 030149 18 AR-ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFPN 84 (182)
Q Consensus 18 ~~-v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (182)
++ |+++|++|+|||||+|++.+..... ..+|.+.....+.+.+..+.+|||+|.-. +... ...+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 44 9999999999999999999877522 34566677778888889999999999622 1222 234788
Q ss_pred CCeEEEEEeCCCcc--hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh---ccccccCCccEEEEec
Q 030149 85 TQAIIYVVDSSDTE--RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL---ELHKIKNRQWAIFKTS 159 (182)
Q Consensus 85 ~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~S 159 (182)
+|++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ........ ... ......+++++|
T Consensus 258 aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~~~~~~~~~~S 334 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LYSPIFDVIPIS 334 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HCSCEEEEEECB
T ss_pred CCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hcCCCCcEEEEE
Confidence 99999999998876 33332 333344444444578999999999997543 22211111 011 002234689999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q 030149 160 AIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~~~~~~ 179 (182)
|++|.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=148.73 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc---ccceeEEEEEEcCeEEEEEEcCCCCCCcc-----------h
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------Y 77 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~ 77 (182)
..+.++|+++|++|+|||||++++++..... ..+ |.......+.+.+..+.+|||||...+.. .
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999999877332 222 44455566777899999999999765432 1
Q ss_pred hhhccCCCCeEEEEEeCCCcchHH-HHHHHHHHHHhhcccCCCeEEEEee-cCCCCCCCCHHHH---------HHHhccc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLV-IAKDEFHAILEEEELRGAVVLIFAN-KQDLPGALDDAAV---------TEALELH 146 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~iivv~n-K~Dl~~~~~~~~~---------~~~~~~~ 146 (182)
...+++.+|++|+|+|+++..... ....++...... ....|.++++| |+|+... ..... .......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 223678999999999998633221 122233332211 11356666666 9999743 33221 1111111
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
......+..+++||++|.|++++|+.|.+.+...
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1110001118899999999999999999988753
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=149.36 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=106.8
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC----------CcchHHHHHHHHHHHHhhcc
Q 030149 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|.|.....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 34667778888889999999999999999999999999999999999998 77899999999999988777
Q ss_pred cCCCeEEEEeecCCCCCC-----------------CCHHHHHHHhcccc-----------ccC-----------CccEEE
Q 030149 116 LRGAVVLIFANKQDLPGA-----------------LDDAAVTEALELHK-----------IKN-----------RQWAIF 156 (182)
Q Consensus 116 ~~~~~iivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~ 156 (182)
..+.|+++++||+|+.+. .+.++..+.+.... ... ..+.+.
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 778999999999998421 12223322222111 111 357799
Q ss_pred EecccCCCChHHHHHHHHHHHhh
Q 030149 157 KTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 157 ~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++||+++.+|+.+|+.+.+.+.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999887753
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=155.28 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=104.9
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------------c-----------------------cccccee
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-------------T-----------------------IPTIGFN 52 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------------~-----------------------~~t~~~~ 52 (182)
+.+....+.++|+++|++++|||||+++|+...... . .-|+...
T Consensus 16 l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~ 95 (434)
T 1zun_B 16 LGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVA 95 (434)
T ss_dssp CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCE
T ss_pred HhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEee
Confidence 334444566999999999999999999997543100 0 1122333
Q ss_pred EEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 53 VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 53 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
...+...+..+.+|||||++++...+..++..+|++|+|+|+++... .....++... ... ...|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 96 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HHT--TCCEEEEEEECTTTTT
T ss_pred eeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEEcCcCCc
Confidence 44455578899999999999998888888999999999999987643 2223333322 221 1246999999999975
Q ss_pred CCCHHH---HHHHhc----cccccCCccEEEEecccCCCChHHHH
Q 030149 133 ALDDAA---VTEALE----LHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 133 ~~~~~~---~~~~~~----~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.. .+. +..... ........++++++||++|.|+++++
T Consensus 172 ~~-~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 172 FD-ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp SC-HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred cc-HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 32 221 222221 11111234789999999999998843
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=158.35 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=111.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Ccc------c----------ccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVS------T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~~------~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
.+..||+++|+.++|||||+++++... +.. . ..|+......+.+. ...+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999997521 110 0 11222223344443 378999999999
Q ss_pred CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCC
Q 030149 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.++...+..+++.+|++|+|+|+++..+......|.... . .+.|+++|+||+|+.... .++..+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 999988888899999999999999887665555444332 2 478999999999997653 444333333221 112
Q ss_pred ccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 152 QWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
..+++++||++|.|++++++.+.+.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2348999999999999999999988754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-24 Score=160.64 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=103.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|++++|||||+++|+.. .+.. ...|+......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999754 2211 1234445555666688
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHH---hhcccCC-CeEEEEeecCCCCCCC-C
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAIL---EEEELRG-AVVLIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~-~~iivv~nK~Dl~~~~-~ 135 (182)
..+.+|||||++++...+..+++.+|++|+|+|+++ .+|+....|..+.. ......+ .|+++++||+|+.+.. +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 999999999999999999999999999999999988 56664332221111 1111123 4689999999997631 1
Q ss_pred H---HH----HHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 136 D---AA----VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 136 ~---~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
. +. +.+.+.........++++++||++|.|+.++++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 12 222222212222247899999999999986543
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=159.61 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=107.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--Ccc------c----------ccccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE--VVS------T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~--~~~------~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..||+++|+.++|||||+++|+... +.. . ..|+......+.+. ...+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56799999999999999999997522 110 1 11222333445443 3789999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCc
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++...+..+++.+|++|+|+|+++..+......|.... . .+.|+++|+||+|+.... .++..+.+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 99999999999999999999998876665555444433 2 378999999999997653 333333332221 1122
Q ss_pred cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.+++++||++|.|++++++.+.+.+..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 348999999999999999999988754
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-25 Score=166.55 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=108.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cc--cccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.++|+++|++++|||||++++.+..+.. .. .|.......+.+++..+.+|||||++.+..++...+..+|++|+|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998654432 11 233333334445677899999999999999999889999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc--c--CCccEEEEecccCCCChH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI--K--NRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gi~ 167 (182)
+|+++.... .....+... ...+.|+++++||+|+.... .+.+...+..... . ....+++++||++|.|++
T Consensus 82 Vda~~g~~~-qT~e~l~~~----~~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMP-QTIEAIQHA----KAAQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCT-TTHHHHHHH----HHTTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccH-HHHHHHHHH----HhcCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999874211 111222222 22478999999999996532 1122222111110 1 123689999999999999
Q ss_pred HHHHHHHHH
Q 030149 168 EGLDWLSNT 176 (182)
Q Consensus 168 ~l~~~l~~~ 176 (182)
++++.+...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998653
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-24 Score=160.14 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=102.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--cc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...+||+++|++++|||||+++|+.... .. ...|.......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 5679999999999999999999975411 00 1224445556666788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHH-----HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVI-----AKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.+|||||++++...+..++..+|++|+|+|+++..++.. .......+.... ...|+++|+||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999988643322 112222222221 2356999999999975311
Q ss_pred --HHHHHHHh----ccccccCCccEEEEecccCCCChHH
Q 030149 136 --DAAVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 136 --~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
.+++.+.+ .........++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222222 1112222367899999999999985
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=161.78 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=104.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|++..... ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999998653221 1224555566677788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH--HHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV--IAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.+|||||++.+...+..+++.+|++|+|+|+++.. ++. ............. ...|+++|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999997632 110 0111111222221 2356999999999975311
Q ss_pred --HHHHHHH----hccccccCCccEEEEecccCCCChHHH
Q 030149 136 --DAAVTEA----LELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 136 --~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
.+++... +.........++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1112222 221222223578999999999999876
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=153.40 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=110.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CCcc------------cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
.+.++|+++|++++|||||+++|.+. .+.. ...|.......+...+..+.+|||||++++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999862 2211 112444444455557789999999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCC-HH----HHHHHhccccc
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALD-DA----AVTEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (182)
...+..++..+|++|+|+|+++... .....++..... .+.| +++++||+|+..... .+ ++.+.+.....
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 8888888999999999999987653 333444443322 3677 899999999974211 11 12222222112
Q ss_pred cCCccEEEEecccCCCC------------------hHHHHHHHHHHHh
Q 030149 149 KNRQWAIFKTSAIKGEG------------------LFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~S~~~~~g------------------i~~l~~~l~~~~~ 178 (182)
.....+++++||++|.| +++|++.|.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22346899999999987 7788887776654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=151.78 Aligned_cols=121 Identities=21% Similarity=0.371 Sum_probs=92.1
Q ss_pred cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC----------CcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
....+.+|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.+.....+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999998876655789999999999
Q ss_pred CCCCC----CC-------------------HHHHHHHhccccc--------c---CCccEEEEecccCCCChHHHHHHHH
Q 030149 129 DLPGA----LD-------------------DAAVTEALELHKI--------K---NRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 129 Dl~~~----~~-------------------~~~~~~~~~~~~~--------~---~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
|+.+. .. .++..+.....+. . ...+.+++|||++++||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98321 00 1111111111100 0 2345579999999999999999998
Q ss_pred HHHhh
Q 030149 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=143.10 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=101.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c----ccccceeEEEEEEcCeEEEEEEcCCCCC-----------Ccc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTS-----------IRP 76 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~ 76 (182)
.....++|+++|++|+|||||++++++..+.. . ..|.......+.+.+..+.+|||||... +..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34677999999999999999999999877644 2 2244456666777899999999999542 334
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCCCCHHHHHHHh---ccccccCCc
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGALDDAAVTEAL---ELHKIKNRQ 152 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~ 152 (182)
....+.+.+|++|+|+|+++.... ...++..+..... ....|+++|+||+|+.+....++..... ........+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 445566789999999998765432 2233333322211 1246899999999986543332111100 001111122
Q ss_pred cEEEEecccC-----CCChHHHHHHHHHHHhh
Q 030149 153 WAIFKTSAIK-----GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~S~~~-----~~gi~~l~~~l~~~~~~ 179 (182)
..++.++... ..++.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 2366665553 36899999998888765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-24 Score=158.92 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=101.0
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccccccee----EEEEEEcCeEEEEEEcCC--------CCCCcchhhh
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGG--------QTSIRPYWRC 80 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~ 80 (182)
..++..+|+++|.+|+|||||+|++.+..+....++.+.+ ...+.+.+..+.+||||| ++.+...+..
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 3466789999999999999999999988766544444444 333344678999999999 4455566777
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+++.+|++|+|+|..+.. .....++...+.. .++|+++|+||+|+.+.. ... ....... ....+++||
T Consensus 99 ~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~----~e~~~lg-~~~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI----YDFYSLG-FGEPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC---------------CCSGGGS-SSSEEECCT
T ss_pred hHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhH----HHHHHcC-CCceEEeec
Confidence 888999999999986643 3334455555443 579999999999986321 111 1111111 113679999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q 030149 161 IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~ 179 (182)
++|.|+.++++.+.+.+..
T Consensus 167 ~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHhhccc
Confidence 9999999999999887653
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=152.48 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=108.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-------CCcc------------cccccceeEEEEEEcCeEEEEEEcCCCCCCcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG-------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
+.++|+++|++++|||||+++|.+. .+.. ...|++.....+...+..+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999763 1110 11233333334445678999999999999888
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-H----HHHHHhccccccC
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-A----AVTEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~ 150 (182)
.+..++..+|++|+|+|+++.... .....+..+ .. .+.| +++++||+|+.+.... + ++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888889999999999999886432 223333322 22 3677 7899999999742111 1 2222222222222
Q ss_pred CccEEEEecccCCCC----------hHHHHHHHHHHHh
Q 030149 151 RQWAIFKTSAIKGEG----------LFEGLDWLSNTLK 178 (182)
Q Consensus 151 ~~~~~~~~S~~~~~g----------i~~l~~~l~~~~~ 178 (182)
..++++++||++|.| +++|++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346899999999764 8899999887664
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=146.57 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=88.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c-------ccccceeEEEEEE--cC--eEEEEEEcCCCCCC-------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T-------IPTIGFNVETVQY--NN--IKFQVWDLGGQTSI------- 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~------- 74 (182)
...++|+++|.+|+|||||+|++++..... + .+|.+........ .+ ..+.+|||||..+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 457999999999999999999987665433 2 5566655555544 22 58999999997422
Q ss_pred cchh-------hhcc-------------CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC
Q 030149 75 RPYW-------RCYF-------------PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 134 (182)
..+. ..++ ..+|+++++++............++..+ .. ++|+++|+||+|+..+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2221 1111 2378999999876532222222333332 22 79999999999986432
Q ss_pred CHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
......+.+.. .....+++++++|+.+++|++++++.|.+.++
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 22222222221 12234567999999999999999999887653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-23 Score=149.44 Aligned_cols=132 Identities=27% Similarity=0.332 Sum_probs=100.8
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCC----------cchHHHHHHHHHHHHhhcccC
Q 030149 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSD----------TERLVIAKDEFHAILEEEELR 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 3344555566778999999999999999999999999999999999999 889999999999998765557
Q ss_pred CCeEEEEeecCCCCCC-----C------------------------C---HHHHHHHh----cccc----ccCCccEEEE
Q 030149 118 GAVVLIFANKQDLPGA-----L------------------------D---DAAVTEAL----ELHK----IKNRQWAIFK 157 (182)
Q Consensus 118 ~~~iivv~nK~Dl~~~-----~------------------------~---~~~~~~~~----~~~~----~~~~~~~~~~ 157 (182)
+.|+++|+||+|+.+. . . .++..... .... .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997321 0 0 11111111 1100 0113566889
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
|||++++||+++|+.+.+.+..
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-24 Score=159.88 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=92.4
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC--CCc--------------------------------ccccccceeEEEE
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG--EVV--------------------------------STIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~ 56 (182)
.....+.++|+++|++++|||||+++|+.. .+. ....|++.....+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 334567799999999999999999999642 111 0123445555556
Q ss_pred EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPG 132 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 132 (182)
...+..+.+|||||++++...+...+..+|++|+|+|+++.. +|+...++...+. .....+.| +++++||+|+..
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHHcCCCEEEEEEECccCCC
Confidence 667899999999999999998888899999999999998762 2221111111111 11224566 999999999964
Q ss_pred CC-CHH---H----HHHHhccc-ccc-CCccEEEEecccCCCChHHHH
Q 030149 133 AL-DDA---A----VTEALELH-KIK-NRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 133 ~~-~~~---~----~~~~~~~~-~~~-~~~~~~~~~S~~~~~gi~~l~ 170 (182)
.. +.+ . +...+... ... ...++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 22 221 1 22222111 111 125789999999999998765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=150.50 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=103.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CCcc--------------------------------cccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
.+.++|+++|++++|||||+++|++. .+.. ...|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45789999999999999999999753 1110 2235555566677788
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hHH---HHHHHHHHHHhhcccCCC-eEEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RLV---IAKDEFHAILEEEELRGA-VVLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~ 133 (182)
..+.+|||||++++...+..++..+|++|+|+|+++.. +|+ .....+... .. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997652 111 222222221 22 345 49999999999732
Q ss_pred CCHH---HHHHHh----ccccccCCccEEEEecccCCCChHHH
Q 030149 134 LDDA---AVTEAL----ELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 134 ~~~~---~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+.+ ++...+ .........++++++||++|.|+.++
T Consensus 161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 121 222222 11111112467999999999998754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=144.60 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------cccc----------------------cce--------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGF-------------- 51 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t----------------------~~~-------------- 51 (182)
...++|+|+|.+|+|||||+|++++..+.+ ..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999887642 1222 000
Q ss_pred -------e----EEEEEE-cCeEEEEEEcCCCCC-------------CcchhhhccCCCCeEE-EEEeCCCcchHHHHHH
Q 030149 52 -------N----VETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQAII-YVVDSSDTERLVIAKD 105 (182)
Q Consensus 52 -------~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (182)
. ...+.. ....+.+|||||... +......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 001111 247899999999642 3345667788888766 7999977644333222
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
++..+ ...+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.+.+.
T Consensus 184 ~~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH----CTTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh----CCCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 22222 235789999999999975432 1222111 001111123479999999999999999998764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-24 Score=163.43 Aligned_cols=151 Identities=20% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc----------------------------------ccccccceeEEEEEEc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+..... ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 356789999999999999999999632100 0111333444455556
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc---hH--HHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE---RL--VIAKDEFHAILEEEELRGAV-VLIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 133 (182)
+..+.||||||++++...+...+..+|++|+|+|+++.. ++ .........+... .+.| +|+|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 789999999999999988888899999999999997532 11 1111111122222 3455 9999999999752
Q ss_pred CC--HHHHHHH----h-ccccccCCccEEEEecccCCCChH
Q 030149 134 LD--DAAVTEA----L-ELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 134 ~~--~~~~~~~----~-~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
.. .+.+... + .........++++++||++|.|+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 11 1122222 2 112222235689999999999998
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=146.32 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=84.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------c----------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------S----------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------~----------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+... +. . ...|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531 10 0 0113334455677789999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.++...+..+++.+|++|+|+|+.+.... +...++......+.|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 9999998888899999999999999876421 2222222223357899999999999765
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=149.78 Aligned_cols=114 Identities=22% Similarity=0.161 Sum_probs=87.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--CC------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--EV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+++|++|+|||||+++++.. .+ . .+..|+......+.+.+..+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56799999999999999999999731 11 0 123455666667778899999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+...+..+++.+|++|+|+|+++..+...... |..... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998776555433 333322 47999999999999754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=156.94 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=107.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC-------Ccc--------ccc----ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE-------VVS--------TIP----TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~-------~~~--------~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.+.++|+++|++++|||||+++|.+.. +.. ... |+......+...+..+.+|||||++++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 566999999999999999999997631 100 111 2222233445567899999999999998
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCCH-----HHHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALDD-----AAVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 149 (182)
..+..++..+|++|+|+|+++.... ....++..+.. .+.| +++++||+|+.+.... +++.+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888889999999999999876432 23334433322 2577 7999999999752111 1122222222222
Q ss_pred CCccEEEEecccCC--------CChHHHHHHHHHHHh
Q 030149 150 NRQWAIFKTSAIKG--------EGLFEGLDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~S~~~~--------~gi~~l~~~l~~~~~ 178 (182)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23578999999999 468888888877553
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=130.70 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=98.2
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCc-ccccccceeE--EEEEEcCeEEEEEEcCCCCCC----------cchh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV--ETVQYNNIKFQVWDLGGQTSI----------RPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~----------~~~~ 78 (182)
+...+..+|+++|++|||||||++++.+..+. .+.|+.+... ..+.+.+ .+.+|||||.... ....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44467789999999999999999999987732 3455555332 2333334 7889999997532 1112
Q ss_pred hhcc---CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH-HHHHhccccccCCccE
Q 030149 79 RCYF---PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA-VTEALELHKIKNRQWA 154 (182)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (182)
..++ ..++.+++++|+.++.+.... .+...+. ..+.|+++++||+|+.+...... ..............+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 2223 578999999999887654321 1122222 24689999999999865322111 1111111111122467
Q ss_pred EEEecccCCCChHHHHHHHHHHHhh
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
++++|++++.|++++++.|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999887654
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=145.90 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc--CCCc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM--GEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..+|+++|++|+|||||+++++. +.+. ....|.......+.+.+..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 46779999999999999999999984 2211 01224445566677789999999999999
Q ss_pred CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
++...+..+++.+|++|+|+|+++..+..... .|..+.. .+.|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999998876655443 3333332 47899999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=131.09 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=84.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhcc--------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF-------- 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 82 (182)
.+.++|+++|++|+|||||++++.+.......+ |.......+.+.+..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 478999999999999999999999887533222 44556666777899999999999887655443333
Q ss_pred -CCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhccc-CCCeEEEEeecCCCCC
Q 030149 83 -PNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEEL-RGAVVLIFANKQDLPG 132 (182)
Q Consensus 83 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~ 132 (182)
..+|++++|+|++... +... ..++..+...... ...|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987654 3333 3455444433221 1258999999999953
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=146.17 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=84.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+++|+.|+|||||++++++.... . ...+.......+.+....+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 56789999999999999999999843221 0 01133345556667889999999999999
Q ss_pred CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+...+..+++.+|++++|+|+.+..... ...++..... .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888888999999999999987654322 2234433332 478999999999987
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=147.80 Aligned_cols=161 Identities=23% Similarity=0.247 Sum_probs=105.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccc-eeE--------EEEEE-------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNV--------ETVQY------------------------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~-~~~--------~~~~~------------------------- 58 (182)
...++|+|+|.+|+|||||+|+|++....+ ..|+.. ... .+..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 567999999999999999999999887654 233221 000 01111
Q ss_pred ---------------------cC----eEEEEEEcCCCCC---CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHH
Q 030149 59 ---------------------NN----IKFQVWDLGGQTS---IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAI 110 (182)
Q Consensus 59 ---------------------~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
.. ..+.+|||||... ....+..+++.+|++|+|+|++++.+......+ ...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-ENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HHH
Confidence 00 4699999999543 445666788899999999999888766554333 222
Q ss_pred HhhcccCCCeEEEEeecCCCCCCC-----CHHH-------HHHH----hccccc----cCCccEEEEeccc---------
Q 030149 111 LEEEELRGAVVLIFANKQDLPGAL-----DDAA-------VTEA----LELHKI----KNRQWAIFKTSAI--------- 161 (182)
Q Consensus 111 ~~~~~~~~~~iivv~nK~Dl~~~~-----~~~~-------~~~~----~~~~~~----~~~~~~~~~~S~~--------- 161 (182)
+. ..+.|+++|+||+|+.... +.++ +... +..... .....+++++||+
T Consensus 226 l~---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IK---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TT---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HH---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 22 2367899999999986431 1111 2111 111100 0123469999999
Q ss_pred -----CCCChHHHHHHHHHHHhh
Q 030149 162 -----KGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 162 -----~~~gi~~l~~~l~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-21 Score=140.82 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=81.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c--------ccccceeEEEEEE--cC--eEEEEEEcCCC-------C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--T--------IPTIGFNVETVQY--NN--IKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~-------~ 72 (182)
....++|+|+|++|+|||||++++.+..... + .+|.+........ .+ ..+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 3567899999999999999999987654322 1 1344433333322 33 47899999998 5
Q ss_pred CCcchhh-------hccC-------------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 73 SIRPYWR-------CYFP-------------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+..++. .+++ .+|+++|+++.. ..++......+...+ ..+.|+|+|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC
Confidence 5555543 3332 235677777642 233443433222222 25789999999999974
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
........... .......+++++++||+++.+ ++.+..+.+.+.+
T Consensus 189 ~~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 32222111122 122334567899999999998 7778777776654
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=142.86 Aligned_cols=114 Identities=17% Similarity=0.058 Sum_probs=85.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--Cc-------------------ccccccceeEEEEEEcC-------eEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------STIPTIGFNVETVQYNN-------IKFQVW 66 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 66 (182)
.+..+|+|+|+.|+|||||+++|+... +. ....|+......+.+.+ ..+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999996421 11 01123444445566655 899999
Q ss_pred EcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
||||+.+|...+..+++.+|++|+|+|+++....... ..|.... ..+.|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQAN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999876543332 3333332 247899999999998654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=134.68 Aligned_cols=160 Identities=20% Similarity=0.218 Sum_probs=97.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc-------cccc-ceeE---------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-------IPTI-GFNV--------------------------------- 53 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~-------~~t~-~~~~--------------------------------- 53 (182)
...++|+|+|++|+|||||+|++++..+.+. .|+. ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998876221 1100 0000
Q ss_pred -------------------EEEEE---cCeEEEEEEcCCCCC-------------CcchhhhccCCCCeEEEEEeCCCcc
Q 030149 54 -------------------ETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 54 -------------------~~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
..+.+ ....+.+|||||... +......+++.+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00111 346899999999753 3345567788999999999974332
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc--cccCCccEEEEecccC---CCChHHHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH--KIKNRQWAIFKTSAIK---GEGLFEGLDWL 173 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~---~~gi~~l~~~l 173 (182)
........+ .......+.|+++|+||+|+...... ..+..... .......++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i---~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQL---AKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHH---HHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHH---HHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 111111112 22222357899999999999754331 11112111 1112223345555566 88999999998
Q ss_pred HHHHhh
Q 030149 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 887764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=133.24 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=108.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-eEEEEEEcCCCCCC----cch---hhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI----RPY---WRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~----~~~---~~~~~~~~d 86 (182)
..|+++|++|||||||++++.+..... ...|...+...+...+ ..+.+||+||..+. ..+ ....++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 458999999999999999998765321 1224445555566654 88999999997431 111 223356799
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 87 AIIYVVDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
.+++++|++ .+++..+..+..+..... .....|.++++||+|+......+.+.+.+ ...+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999998 666766666666554431 12358899999999987431111121211 22356799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++++.|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=137.36 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=87.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------------------CCcc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..||+|+|+.++|||||..+|+.. .... +.-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 46789999999999999999999521 1111 1225556677888999999999999
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
|+.+|.......++-+|++|+|+|+...-.- .....|..... .+.|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9999999999999999999999999776332 22334444433 48999999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-19 Score=123.42 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=81.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----ccceeEEEEEEcCeEEEEEEcCCCCCCcchhh-------h--c
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR-------C--Y 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~--~ 81 (182)
.+.++|+++|.+|+|||||+|++++..+....+ |.......+...+..+.+|||||..++..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467999999999999999999999887643222 33344455666889999999999876543221 1 1
Q ss_pred cCCCCeEEEEEeCCCcchHHHH-HHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 82 FPNTQAIIYVVDSSDTERLVIA-KDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
.+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+..+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3468999999998653 23332 345544433322 112699999999999654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-20 Score=133.26 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=98.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccccc-ccc--e-----------------------------------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--F----------------------------------------- 51 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-t~~--~----------------------------------------- 51 (182)
.-.+|+|+|++|||||||+|++.+..+.+... +.. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999977633111 000 0
Q ss_pred -----------eEEEEEE---cCeEEEEEEcCCCCCC-------------cchhhhccCCCCeEEEEEeCCCcchHHHHH
Q 030149 52 -----------NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTQAIIYVVDSSDTERLVIAK 104 (182)
Q Consensus 52 -----------~~~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 104 (182)
....+.. ....+.+|||||.... ..+...+++++|++|+|+|..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence 0001111 2457999999997765 556678889999999999876544322
Q ss_pred HHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHHH
Q 030149 105 DEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l 173 (182)
..+..+.......+.|+++|+||+|+.++... .+..+ ......+.+|+++|+.++.++++.+...
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILE----GRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHT----TSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHc----CccccccCCeEEEEECChHHhccCCCHH
Confidence 12222333444457899999999999754321 22111 1223445679999999988887665443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=129.89 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=95.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------CCcc--ccc--cc-------------------ceeEE-----------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------EVVS--TIP--TI-------------------GFNVE----------- 54 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------~~~~--~~~--t~-------------------~~~~~----------- 54 (182)
.+..+|+++|.+|+|||||++++... +... ..| +. +....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 56789999999999999999998522 1100 000 00 00000
Q ss_pred ---------EEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 55 ---------TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 55 ---------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
.+...+..+.++||||... ........+|++++|+|....+....+. . .....|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEE
Confidence 0012467899999999543 2333458899999999987655432211 1 11246889999
Q ss_pred ecCCCCCCCCHHHHHHHhcc----cccc--CCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 126 NKQDLPGALDDAAVTEALEL----HKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 126 nK~Dl~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||+|+............+.. .... ..+.+++++||++|+|++++++.|.+.+..
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99998643222222222211 1101 124579999999999999999999988754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-20 Score=133.35 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=95.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc--------------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI-------------------------------------- 49 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~-------------------------------------- 49 (182)
...++|+|+|.+|+|||||+|++.+.++.+ ..|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999999887642 11220
Q ss_pred -----cee----EEEEEE-cCeEEEEEEcCCCCC-------------CcchhhhccCCCC-eEEEEEeCCCcchHHHHHH
Q 030149 50 -----GFN----VETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTQ-AIIYVVDSSDTERLVIAKD 105 (182)
Q Consensus 50 -----~~~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 105 (182)
+.. ...+.. ....+.+|||||... +..+...++..++ ++++++|++....-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 000 011111 247899999999532 2335556666655 555566665432211111
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCc-cEEEEecccCCCChHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQ-WAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.++......+.|+++|+||+|+.+... .....+ ........+ .+++++||+++.|++++++.+.+
T Consensus 188 ---~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 ---KVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ---HHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ---HHHHHhCcCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333335789999999999975432 122211 111111123 46899999999999999998876
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=131.79 Aligned_cols=80 Identities=28% Similarity=0.255 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc-ccc--cccceeEEEEE---------------------Ec---CeEEEEEEcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV-STI--PTIGFNVETVQ---------------------YN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~-~~~--~t~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (182)
++|+++|.+|+|||||+|++.+.... ... .|...+..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 111 13333322211 12 36799999999
Q ss_pred CCC----Ccchh---hhccCCCCeEEEEEeCCCc
Q 030149 71 QTS----IRPYW---RCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 71 ~~~----~~~~~---~~~~~~~d~ii~v~d~~~~ 97 (182)
... ...+. ..+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 22222 2457899999999999875
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-19 Score=138.26 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=111.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc--CCC------------ccc-------ccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM--GEV------------VST-------IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~--~~~------------~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
+..||+|+|+.++|||||..+|+. +.. ..+ .-|+......+.++++.++++||||+.+|
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 357899999999999999999952 110 101 11445556667789999999999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHH---HHHHhccc-----
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA---VTEALELH----- 146 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~---~~~~~~~~----- 146 (182)
.......++-+|++|+|+|+...-.- .....|..... .+.|.++++||+|......... +.+.+...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~ 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999765321 12344444444 3789999999999865533221 11111100
Q ss_pred ---------------------------------------------------cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 147 ---------------------------------------------------KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 147 ---------------------------------------------------~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
.....-.|++..||+++.|++.|++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~ 235 (638)
T 3j25_A 156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN 235 (638)
T ss_dssp CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence 00112357889999999999999999987
Q ss_pred HHh
Q 030149 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
.++
T Consensus 236 ~~p 238 (638)
T 3j25_A 236 KFY 238 (638)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=123.13 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=88.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------CCc--ccccccc--------------------eeE-------E----E-
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIG--------------------FNV-------E----T- 55 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~------~~~--~~~~t~~--------------------~~~-------~----~- 55 (182)
....|+++|.+|||||||+|++.+. +.. ...|+.. ... . .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999851 110 0111000 000 0 0
Q ss_pred ---------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEee
Q 030149 56 ---------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126 (182)
Q Consensus 56 ---------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
+...+..+.++||+|.... .......+|++++|+|+..++....... .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0125678999999995422 2334678999999999976532211110 11 2457899999
Q ss_pred cCCCCCCCCH----HHHHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 127 KQDLPGALDD----AAVTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 127 K~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
|+|+.+.... ..+...+..... .....+++++||++|+|++++++.|.+.+.
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9998632111 112221211111 011357899999999999999999988764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=124.57 Aligned_cols=133 Identities=20% Similarity=0.103 Sum_probs=98.3
Q ss_pred HHHHHHhcCCCc-c-cccccceeEEEEEE-cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHH
Q 030149 32 TILYRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEF 107 (182)
Q Consensus 32 sli~~~~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (182)
+++.++..+.+. . +.||++.... +.. .+..+.+||+ ++.+..++..+++++|++|+|+|+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777777776 4 7889994433 333 2348999999 8999999999999999999999999987 677777777
Q ss_pred HHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 108 HAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
..+.. .+.|+++|+||+|+.+....++..+..... ... ++++++||++|.|++++|..+.
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhc
Confidence 76533 479999999999997432111122211111 111 6799999999999999998764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=117.72 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=93.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-------ccccc----------ceeEEEEE------------------Ec
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI----------GFNVETVQ------------------YN 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-------~~~t~----------~~~~~~~~------------------~~ 59 (182)
.+..+|+++|.+|+|||||++++....... ..+.. +.....+. ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 466899999999999999999997542110 00100 11111111 13
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~ 137 (182)
+..+.+|||+|+.... ..+....+.+++|+|+.+.... ... +... .+.|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 4578899999952111 0111256889999998765321 111 1111 24788999999998532 2344
Q ss_pred HHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 138 AVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+....+... ....+++++||++|.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 444443321 3456899999999999999999999887653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=122.98 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=78.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC-CCcc-c--------ccccceeEEEEEE----cCeEEEEEEcCCC-------C
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG-EVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~-~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (182)
..-.++|+++|++|+|||||++++.+. .+.. . .++.......+.. ....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356699999999999999999998765 3222 1 1222222222222 2468999999997 4
Q ss_pred CCcchhh-------hccC-------------CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 73 SIRPYWR-------CYFP-------------NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+..+.. .+++ .+++++++.+.+. .+++.... .++.... ...++++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCC
Confidence 4444332 2221 2345666666432 12333321 2222222 3679999999999864
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
........+.. ...+...+++++++||+++ |++++|..+.+.+.+.
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 31111111111 1222334577999999999 9999999999887643
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=116.32 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=96.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh-----cCCCcc--ccc---ccc----------eeEEEE-----------------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ-----MGEVVS--TIP---TIG----------FNVETV----------------- 56 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~-----~~~~~~--~~~---t~~----------~~~~~~----------------- 56 (182)
..+...+++.|.+|+||||+++.+. +.+..- ..+ ..+ ......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3677889999999999999999997 433211 011 000 000000
Q ss_pred -------------EE-cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhccc
Q 030149 57 -------------QY-NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 57 -------------~~-~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
.. .+..+.+|||||..+...... ..+.. +++++++|+....+.................
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 00 135899999999865432211 24566 8999999975443322222221111111122
Q ss_pred CCCeEEEEeecCCCCCCCCHHHHHHHhcc------c-------------------cccCCccEEEEecccCCCChHHHHH
Q 030149 117 RGAVVLIFANKQDLPGALDDAAVTEALEL------H-------------------KIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
.+.|+++|+||+|+......+++.+.+.. . .......+++++||++++|++++++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 36899999999998643211112221100 0 0011234689999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
++.+.+..
T Consensus 250 ~i~~~~~~ 257 (262)
T 1yrb_A 250 LAYEHYCT 257 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99988754
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=133.32 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=85.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC------------Ccc-------cccccceeEEEEEEc----------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS-------TIPTIGFNVETVQYN---------------- 59 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~------------~~~-------~~~t~~~~~~~~~~~---------------- 59 (182)
.+..||+|+|++++|||||+++++... +.. ...|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 567899999999999999999997531 110 112444444445554
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
+..+++|||||+.++...+..+++.+|++|+|+|+.+..++.....| ..... .+.|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence 68899999999999999999999999999999999988776654433 33322 478999999999985
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-18 Score=130.22 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=78.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCc----ccccccceeEEEE----------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETV---------------------------------- 56 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~----~~~~t~~~~~~~~---------------------------------- 56 (182)
...++|+|+|.+|+|||||+|++++.++. ...|+........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999988763 2223221100000
Q ss_pred ----EEcC---eEEEEEEcCCCCC-----------CcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC
Q 030149 57 ----QYNN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG 118 (182)
Q Consensus 57 ----~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+.. ..+.+|||||... +...+..++..+|++|+|+|+++.........++..+. ..+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcC
Confidence 0000 3689999999764 33455667788999999999987554444444444432 235
Q ss_pred CeEEEEeecCCCCCC
Q 030149 119 AVVLIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~Dl~~~ 133 (182)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 789999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=123.64 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=73.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-c--------ccccceeEEEEEE----cCeEEEEEEcCCCCCCc------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~------ 75 (182)
.-.++|+++|++|+|||||++.+++..+.. . .+|.......+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456889999999999999999999876532 1 1222221111111 22478999999976431
Q ss_pred -c------------------hhhhccCCCC--eEEEEEeCCCcchHHHHH-HHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 76 -P------------------YWRCYFPNTQ--AIIYVVDSSDTERLVIAK-DEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 76 -~------------------~~~~~~~~~d--~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
. +...++.+++ +++|+++.+. .+++... .++..+ . .+.|+|+|+||+|+..+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 1 1123344544 4555555431 2333333 344333 2 37899999999998643
Q ss_pred CCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
........... ......+++++++|+.++.++++++..+...+
T Consensus 183 ~ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22211111111 11223356799999999999999888777654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=125.48 Aligned_cols=114 Identities=21% Similarity=0.173 Sum_probs=82.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------CC------cc-------cccccceeEEEEEEc-------CeEEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV------VS-------TIPTIGFNVETVQYN-------NIKFQVW 66 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--------~~------~~-------~~~t~~~~~~~~~~~-------~~~~~~~ 66 (182)
.+..||+|+|+.++|||||..+|+.. .. .. +.-|+.....++.+. ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56789999999999999999998521 11 10 111344445555553 6899999
Q ss_pred EcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
||||+.+|.......++-+|++|+|+|+...-. ......|.+... .+.|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 999999999999999999999999999976532 122344444444 37999999999998644
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-17 Score=126.27 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=97.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---cc------------------------------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TI------------------------------------------ 49 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~------------------------------------------ 49 (182)
..-++|+|+|.+++|||||+|++++..+.+... |.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355899999999999999999999877632111 10
Q ss_pred -----ce----eEEEEEE-cCeEEEEEEcCCCCCC-------------cchhhhcc-CCCCeEEEEEeCCCcchHHHHHH
Q 030149 50 -----GF----NVETVQY-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTQAIIYVVDSSDTERLVIAKD 105 (182)
Q Consensus 50 -----~~----~~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~ 105 (182)
++ ....+.. ....+.++||||.... ..+...++ ..+|++++|+|++.+..-.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00 0111111 2346899999995441 12233344 57899999999987543222212
Q ss_pred HHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 106 EFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
. .......+.|+++|+||+|+...... ..+.. ...........+++++||++|.|+++|++.+.+
T Consensus 209 l----l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 I----AKEVDPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp H----HHHHCTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred H----HHHHHhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2 22223357899999999999754332 22211 111111223456899999999999999998876
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-18 Score=124.58 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCCcc--ccc--cc-------------------ceeEEE---------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVVS--TIP--TI-------------------GFNVET--------- 55 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~------~~~~~--~~~--t~-------------------~~~~~~--------- 55 (182)
..+...|+++|++|+||||+++.+.+ .+... ..+ +. ......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 35678899999999999999999952 11110 000 00 000000
Q ss_pred -----------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEE
Q 030149 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
....+..+.++||||....... ....+|++++|+|+...+....... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0024678999999997654332 4578999999999865532111100 00 13578999
Q ss_pred eecCCCCCCCCHHH----HHHHhccccc--cCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 125 ANKQDLPGALDDAA----VTEALELHKI--KNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 125 ~nK~Dl~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+||+|+........ +...+..... .....+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999864311221 1111111110 111346999999999999999999988765
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=108.83 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-c--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCCc--
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIR-- 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~-- 75 (182)
++|+++|.+|+|||||+|++.+..... . ..|.+.+...+.+.+ ..+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999876322 2 235555555555544 579999999987642
Q ss_pred -----chhhhccCCCCeEEEEEeCCC
Q 030149 76 -----PYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 76 -----~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222345789999999999976
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=113.73 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcCeEEEEEEcCCCCCC-------cchhhhccCCCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTQ 86 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..+|+++|.|++|||||+|++.+.+... ...|.......+.+.+.+++++||||.-.. .......++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 3689999999999999999999866432 344777888889999999999999994321 122334567899
Q ss_pred eEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 87 AIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
++++|+|+++|..... +...+..+ .......|.++++||.|.
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred ccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 9999999987632211 11111111 112234666777777774
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=107.34 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=89.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce----------------eEEEEEE-------------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF----------------NVETVQY------------------- 58 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~----------------~~~~~~~------------------- 58 (182)
.+.++|+++|.+|||||||+++++...+.. +.++++. ....+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998654322 2222221 1111110
Q ss_pred -cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CC
Q 030149 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~ 135 (182)
.+..+.++|++|.-... ..+-...+..+.++|......... . .... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--K-HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--T-CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--h-hhhH------hhcCCEEEEeccccCchhHHH
Confidence 01257777777732111 111123456677777532211110 0 0111 14788999999998532 23
Q ss_pred HHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
.++....... .....+++++||++|.|++++|+.+.+.+...
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333333322 13456899999999999999999999888654
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=105.59 Aligned_cols=175 Identities=21% Similarity=0.302 Sum_probs=115.1
Q ss_pred hHHHhhhhcCCcccEEEEEcCC-CCCHHHHHHHHhcCC-Ccc-------cccccc--ee-----EEEEEE----------
Q 030149 5 FTRLFSSLFGNKEARILVLGLD-NAGKTTILYRLQMGE-VVS-------TIPTIG--FN-----VETVQY---------- 58 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~-~~GKtsli~~~~~~~-~~~-------~~~t~~--~~-----~~~~~~---------- 58 (182)
.+.|+.++.++..++++++|+. ..=..+|+.++...+ ..+ ...-+| +. ...+++
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 4567788888999999999963 234558888887644 221 111111 11 111111
Q ss_pred ------c----CeEEEEEEcC------CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHH---HHHhhc-ccCC
Q 030149 59 ------N----NIKFQVWDLG------GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFH---AILEEE-ELRG 118 (182)
Q Consensus 59 ------~----~~~~~~~D~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~-~~~~ 118 (182)
. -.++.....| |+..++.+|..|++++|++|||+|.++.+.++ .+..+. .++... ...+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 0 0123333444 78899999999999999999999999887654 444442 233222 2367
Q ss_pred CeEEEEeecC-CCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 119 AVVLIFANKQ-DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 119 ~~iivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
.|++|+.||. |+.......++.+.+..... ...|.+..|||++|+|+.+-++||.+.+.+++
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 8999999995 78888889999999887765 47899999999999999999999998887654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=110.75 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=89.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc------CCCcc--cccc--------------cc-----eeEEE------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM------GEVVS--TIPT--------------IG-----FNVET------------ 55 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~------~~~~~--~~~t--------------~~-----~~~~~------------ 55 (182)
.+...++++|++|||||||++.+.+ ++..- ..++ ++ .....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 5667899999999999999999973 32211 0000 00 00000
Q ss_pred ----------EEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 56 ----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 56 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
+...+..+.++||||...... .....+|.+++++|+...+........ +. ..+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEE
Confidence 112578999999999754322 234689999999998644321111100 11 23457788
Q ss_pred ecCCCCCCCC-H----HHHHHHhcccccc--CCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 126 NKQDLPGALD-D----AAVTEALELHKIK--NRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 126 nK~Dl~~~~~-~----~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
||+|+..... . +++.......... ....+++.+|++++.|++++++.|.+.+.
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999753211 1 1222222111100 01245899999999999999999988764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=103.78 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=88.4
Q ss_pred cCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHH---HHHhhc-ccCCCeEEEEeec-CCCCCCCCHHHHHHH
Q 030149 68 LGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFH---AILEEE-ELRGAVVLIFANK-QDLPGALDDAAVTEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~-~~~~~~iivv~nK-~Dl~~~~~~~~~~~~ 142 (182)
.+|++..+.+|..|++++|++|||+|+++.++++ ....+. .++... ...+.|++|+.|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999988765 333333 333222 1368999999997 589888889999999
Q ss_pred hccccccCCccEEEEecccCCCChHHHHHHHHHHHhhcC
Q 030149 143 LELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSIG 181 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~~ 181 (182)
+...... ..+-+..|||.+|+|+.|-++||.+.+.+++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 8876654 7889999999999999999999999987654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=105.61 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCc--c-cccccceeEEEEEE---------------------cCeEEEEEEcCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~--~-~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (182)
++|+++|.+|+|||||++++.+.... . ...|...+.....+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999875421 1 11234433333332 245799999999765
Q ss_pred Cc-------chhhhccCCCCeEEEEEeCCC
Q 030149 74 IR-------PYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.. .....+++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223345789999999999975
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=97.88 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (182)
....+|+++|.+|+|||||+|++.+..... ...|...+...+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999876522 223555555555543 235999999997653
Q ss_pred c-------chhhhccCCCCeEEEEEeCCCcc
Q 030149 75 R-------PYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 75 ~-------~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
. ..+..+++.+|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 24566789999999999987643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=91.95 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCcchhhhccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccccc
Q 030149 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (182)
++.+..+...+++++|++++|+|+++++ ++..+..|+..+.. .+.|+++|+||+|+.++...+...+... ...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~--~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS--IYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH--HHH
Confidence 6677777788999999999999999886 77777777765433 5799999999999974311011111111 111
Q ss_pred CCccEEEEecccCCCChHHHHHHHH
Q 030149 150 NRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
..+.+++++||++|.|++++++.+.
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2356799999999999999998764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=91.20 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=60.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcC-----------------eEEEEEEcCCCC-
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNN-----------------IKFQVWDLGGQT- 72 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~- 72 (182)
.+..+|+++|++|+|||||+|++.+..... ..| |...+...+.+.+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 456899999999999999999999866422 233 5555666666654 468999999943
Q ss_pred ------CCcchhhhccCCCCeEEEEEeCCC
Q 030149 73 ------SIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345566789999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-12 Score=96.23 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----CCccccccccee--EEEEEEcCeEEEEEEcCCCCCCcch--------hhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG-----EVVSTIPTIGFN--VETVQYNNIKFQVWDLGGQTSIRPY--------WRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~-----~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 81 (182)
..+|+++|.+|+|||||+|++.+. ......+..+.+ ...+.. +..+.++||||....... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~-~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL-ESGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC-STTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe-CCCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999875 222222222222 222322 234899999995433211 1111
Q ss_pred c--CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 82 F--PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
+ ...+.++++++......+..+.. +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 1 66899999999843211111110 22333356899999999998644
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=91.44 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=87.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccccc-----------ceeEEEE----------------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIPTI-----------GFNVETV---------------- 56 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~t~-----------~~~~~~~---------------- 56 (182)
.+...|+++|.+|+||||+++.+. +.+... +.+.. +......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 443211 11100 0111110
Q ss_pred -EEcCeEEEEEEcCCCCCCcc-hhh---hc--cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecC
Q 030149 57 -QYNNIKFQVWDLGGQTSIRP-YWR---CY--FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQ 128 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~-~~~---~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~ 128 (182)
...+..+.++||||...... .+. .. ...+|.+++|+|+...... ......+.. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCC
Confidence 11567899999999764322 111 11 1268999999999775431 112222211 2564 8999999
Q ss_pred CCCCCCCH-HHHHHHhccc--------cc--cCCccEEEEecccCCCC-hHHHHHHHHHH
Q 030149 129 DLPGALDD-AAVTEALELH--------KI--KNRQWAIFKTSAIKGEG-LFEGLDWLSNT 176 (182)
Q Consensus 129 Dl~~~~~~-~~~~~~~~~~--------~~--~~~~~~~~~~S~~~~~g-i~~l~~~l~~~ 176 (182)
|....... -.+...+..- .. .....+.+.+|+..|.| +++|++.+.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98744322 1222222110 00 00112345689999999 99999988754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=84.63 Aligned_cols=142 Identities=11% Similarity=0.148 Sum_probs=72.9
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc---c--ccccceeEEEEEEc--C--eEEEEEEcCCCCCCcc------
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS---T--IPTIGFNVETVQYN--N--IKFQVWDLGGQTSIRP------ 76 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~--~~t~~~~~~~~~~~--~--~~~~~~D~~g~~~~~~------ 76 (182)
..+...++++|+|++|+|||||++.+.+..+.. . .+........+... . ..+.++|++|......
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhh
Confidence 334455779999999999999999998865322 1 11111111111111 1 3689999998543210
Q ss_pred --------hh----hhc---------cCC--CCe-EEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 77 --------YW----RCY---------FPN--TQA-IIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 77 --------~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+ ..+ ..+ +|+ ++++.|...+.+-.+ ..++.... .+.|+|+|+||+|...
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccc
Confidence 11 111 122 234 445556544322111 23333333 5799999999999875
Q ss_pred CCCHHHHHHHhccccccCCccEEEEecc
Q 030149 133 ALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
+.....+...+.. .....+++++.+|.
T Consensus 191 ~~E~~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 191 KSELTKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred hHHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence 4333333333322 12335666666664
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-11 Score=87.97 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=70.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------CcccccccceeEEEEEE-cCeEEEEEEcCCCCCCcch--------hhhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE------VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY--------WRCY 81 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~------~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~--------~~~~ 81 (182)
..+|+++|.+|+|||||+|++.+.. .....+..+.+.....+ -+..+.++||||......+ ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 4689999999999999999998752 22122233333222222 1223899999995433211 1111
Q ss_pred --cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 82 --FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
....+.++++++.........+. .+......+.|+++++||.|.......+...+.+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 35678999999873321111110 0223333568999999999987554444444333
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-11 Score=86.81 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccc
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (182)
..+.|...+..+.+.++++++|+|+.+++ ..|...+.+.. .+.|+++|+||+|+.+... .+...+.+.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 45677888888888999999999998753 23333333322 3789999999999965432 2233222111 11
Q ss_pred cCCcc---EEEEecccCCCChHHHHHHHHHHHh
Q 030149 149 KNRQW---AIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~---~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..++ +++.+||++|.|++++++.+.+...
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 11223 6999999999999999999977543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=80.85 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=87.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccc--cccc----eeEEEEEEcC-eEEEEEEcCCCCCCcc----hh-hhcc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTI--PTIG----FNVETVQYNN-IKFQVWDLGGQTSIRP----YW-RCYF 82 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~--~t~~----~~~~~~~~~~-~~~~~~D~~g~~~~~~----~~-~~~~ 82 (182)
.+...++++|++|||||||+|.+.+....... ...+ ......+... ..+.++|++|...... .. ...+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34568999999999999999999874322110 0000 0011111121 3689999998532111 11 1123
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC---------CCCCHHHHHHHhcccc-----c
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP---------GALDDAAVTEALELHK-----I 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~ 148 (182)
...+..+. ++...... .+..+...+.. .+.|+++|.||.|+. ++...+++.+.+.... .
T Consensus 147 ~~~~~~~~-lS~G~~~k---qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH---HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555 77653221 11222222222 368999999999963 2233444444433321 1
Q ss_pred c-CCccEEEEecc--cCCCChHHHHHHHHHHHhh
Q 030149 149 K-NRQWAIFKTSA--IKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~-~~~~~~~~~S~--~~~~gi~~l~~~l~~~~~~ 179 (182)
. .....++.+|+ ..+.|++++.+.+.+.+++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 11234788999 5666799999999887754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-10 Score=77.65 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCccc----------ccccceeEEEEEE------cCeEEEEEEcCCCCCCc-----
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVST----------IPTIGFNVETVQY------NNIKFQVWDLGGQTSIR----- 75 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~----------~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~----- 75 (182)
.++++++|++|+|||||++.+++...... ..+... ..+.+ -...+.++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~--~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI--KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC--CEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee--eeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 47899999999999999999986432210 011111 11111 12378999999832210
Q ss_pred --chh---------------------hhccCCCCeEEEEEeCC-CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 76 --PYW---------------------RCYFPNTQAIIYVVDSS-DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 76 --~~~---------------------~~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
... ...+..++++++++|.. .+-.-.. ...+..+ ... .++++|+||+|..
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L----~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL----SKV-VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH----HTT-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH----Hhc-CcEEEEEeccccC
Confidence 000 01123468899999964 2221111 2222222 223 8999999999987
Q ss_pred CC
Q 030149 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=85.32 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=68.6
Q ss_pred CCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccc
Q 030149 70 GQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 148 (182)
.++.|...+..+.+.++++++|+|+.++++ .|...+.... .+.|+++|+||+|+..... .+...+.+.. ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 477788888888889999999999998763 2222222222 3789999999999975432 2333322211 11
Q ss_pred cCCc---cEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 149 KNRQ---WAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~---~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+..+ .+++.+||++|.|++++++.+.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 1222 368999999999999999999876543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-10 Score=79.58 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=67.0
Q ss_pred EEEcCCCC-CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHh
Q 030149 65 VWDLGGQT-SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEAL 143 (182)
Q Consensus 65 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~ 143 (182)
+-..||+. .........+..+|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44678875 445566667899999999999998876532 1222222 479999999999997531112222222
Q ss_pred ccccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 144 ELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
+..+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123457999999999999999998887765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=76.57 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE--EEEEcCeEEEEEEcCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE--TVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~ 73 (182)
..+.++|+++|.+|+|||||+|++.+.......++.+.+.. .+.. +..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcCC
Confidence 35678999999999999999999998775554443332221 2222 45789999999643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-10 Score=77.54 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~ 74 (182)
++++++|.+|+|||||+|++.+.......++.+.+.....+ .+..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 69999999999999999999987765544444433221111 2457899999996543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=73.43 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=63.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCcc-----ccc-----------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------GEVVS-----TIP-----------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~~~~~-----~~~-----------t~~~~~~~~----------------- 56 (182)
+...|+++|.+|+||||++..+.. .+..- +.+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999862 22110 111 011111100
Q ss_pred EEcCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 57 QYNNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
...+..+.++||||......... .....+|.+++|+|+....... .....+.. .-.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~----~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKE----ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHh----hCCCeEEEEECCCC
Confidence 00247899999999654332111 1123579999999987643322 22222221 23456789999998
Q ss_pred CC
Q 030149 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-08 Score=74.74 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc-cccc-----ccceeEEEEE---EcCeEEEEEEcCCCCC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIP-----TIGFNVETVQ---YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~-~~~~-----t~~~~~~~~~---~~~~~~~~~D~~g~~~ 73 (182)
..+..+|+|+|.+|+|||||+|++.+.... .... |.+....... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 467799999999999999999999987642 2221 2222222122 1567899999999543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-08 Score=75.89 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
..++|+|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=70.92 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=62.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCcc-----ccc-------------------c--cceeEEEE------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG------EVVS-----TIP-------------------T--IGFNVETV------QY 58 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~------~~~~-----~~~-------------------t--~~~~~~~~------~~ 58 (182)
...|+++|.+|+||||+++.+... +..- +.+ . .+.+...+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998641 1110 000 0 00000000 01
Q ss_pred cCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCC-e-EEEEeecCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGA-V-VLIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~Dl 130 (182)
.+..+.++||||......... .....+|.+++|+|+..... .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999765322111 12236899999999865431 11112121 1 234 4 8999999998
Q ss_pred CC
Q 030149 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-08 Score=70.26 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=58.9
Q ss_pred cCCCC-CCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccc
Q 030149 68 LGGQT-SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELH 146 (182)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (182)
.||+. .........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.++...+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l--~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S--RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T--TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c--CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 46754 33445666789999999999998886543211 11 1 1 789999999999975322122222221
Q ss_pred cccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 147 KIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
..+.++ .+||+++.|++++++.+..
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 124457 9999999999999887643
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=65.65 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=56.2
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCcc
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQW 153 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~ 153 (182)
....+.++|.+++|+|+.+|..-... +..++......++|.++|+||+|+.++.. .+.+.+.+. ..+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~ 151 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGY 151 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCC
Confidence 33457889999999999877543332 22222222224789999999999986522 122222221 1235
Q ss_pred EEEEecccCCCChHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~ 172 (182)
+++.+|+.++.|+++|++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6999999999998877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.9e-06 Score=60.88 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEEE-----------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~~----------------- 56 (182)
+...|+++|++|+||||++..+. +.+..- +.+ ..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35688999999999999999986 222110 000 011111100
Q ss_pred EEcCeEEEEEEcCCCCC--Ccchh----hh--ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 57 QYNNIKFQVWDLGGQTS--IRPYW----RC--YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~--~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
...+..+.++||||... ..... .. .....+.+++|+|+...+...... ..+... -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~----~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA----SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH----CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc----cCCcEEEEecc
Confidence 01367899999999644 21111 10 112468999999997654322222 222211 24568899999
Q ss_pred CCCC
Q 030149 129 DLPG 132 (182)
Q Consensus 129 Dl~~ 132 (182)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.16 E-value=5.7e-06 Score=60.13 Aligned_cols=86 Identities=21% Similarity=0.117 Sum_probs=52.1
Q ss_pred ccCCCCeEEEEEeCCCcchHHH-HHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 81 YFPNTQAIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...++|.+++|... .|..-.. +..++... . ..++|.++|+||+|+.++...+....... .....+++++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-E---TLQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-H---HHTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEe
Confidence 35789999987654 4543222 22222222 1 13688899999999975421111222111 1233456799999
Q ss_pred ccCCCChHHHHHHH
Q 030149 160 AIKGEGLFEGLDWL 173 (182)
Q Consensus 160 ~~~~~gi~~l~~~l 173 (182)
+.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999987653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=60.78 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCCcc-----ccc-----------ccceeEEE-----------------EE
Q 030149 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVET-----------------VQ 57 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~------~~~~~~-----~~~-----------t~~~~~~~-----------------~~ 57 (182)
...++++|++|+||||++..+. +.+..- +.+ ..+..... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578889999999999999985 222110 111 00110000 00
Q ss_pred EcCeEEEEEEcCCCCC--Ccc-hhh-----hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecC
Q 030149 58 YNNIKFQVWDLGGQTS--IRP-YWR-----CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
..++.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322 111 12346899999999864321 2222222211 244 67899999
Q ss_pred CCCC
Q 030149 129 DLPG 132 (182)
Q Consensus 129 Dl~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=58.55 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=62.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCCc-----ccccc-----------cceeEEE--------------E--
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ-------MGEVV-----STIPT-----------IGFNVET--------------V-- 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~-------~~~~~-----~~~~t-----------~~~~~~~--------------~-- 56 (182)
+...|+++|.+|+||||++..+. +.+.. .+.+. .+..... +
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999986 32221 11110 0111000 0
Q ss_pred -EEcCeEEEEEEcCCCCCCcchhh------hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecC
Q 030149 57 -QYNNIKFQVWDLGGQTSIRPYWR------CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQ 128 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
...++.+.++||||......... .....++.+++|+|+...... ......+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 01467899999999765432211 124468999999998654322 122222211 233 34689999
Q ss_pred CCCCC
Q 030149 129 DLPGA 133 (182)
Q Consensus 129 Dl~~~ 133 (182)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-07 Score=69.14 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=50.5
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE----cCeEEEEEEcCCCCC--Ccchh--------
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTS--IRPYW-------- 78 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~-------- 78 (182)
+......|+++|.+||||||+.+++.........++...+...+.. ......+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999754322222222211111000 113446788888632 22222
Q ss_pred hhccCCCCeEEEEEeCCCcc
Q 030149 79 RCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~ 98 (182)
..++...++.++|+|.++..
T Consensus 115 ~~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHHTTCCSEEEEESCCCS
T ss_pred HHHHHhCCCCEEEEeCCCCC
Confidence 44555678889999998873
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=59.10 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.8
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+..-|.|+|++++|||+|+|++++
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 346778899999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.7e-05 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.1e-05 Score=51.60 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.++....+.-.+++.|++|+|||||++.+.+
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34444434567899999999999999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=2.4e-05 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+...|+++|++||||||+++.+.
T Consensus 24 ~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp --CCCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999999998
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2e-05 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.66 E-value=3.4e-05 Score=51.40 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.1
Q ss_pred hhcCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 11 SLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 11 ~~~~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+....+..-|+++|++|||||||++.|.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344456677899999999999999999753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.62 E-value=3e-05 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.9e-05 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|+|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999999864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.4e-05 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---++++|++|||||||++.+.+-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3346899999999999999999764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.6e-05 Score=50.13 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458899999999999999754
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00061 Score=45.32 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=45.5
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~ 131 (182)
.+.+.++|+|+.. .......+..+|.+++++..+... ......+..+.... ..++.++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999866 334445566799999999876544 44444444443221 13456789999999954
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.8e-05 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+.-.++++|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999999763
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.57 E-value=5.1e-05 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-.++++|++||||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999865
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4e-05 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---++++|++|||||||++.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3456889999999999999999764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.56 E-value=5.4e-05 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+..-++++|++||||||+++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568999999999999999997653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.1e-05 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999998643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.52 E-value=5.8e-05 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|+||+|||||||++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.50 E-value=6.7e-05 Score=48.60 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 030149 18 ARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~ 37 (182)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+++.+.+.......+++.|++|+|||++++.+..
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 3344444444557799999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.47 E-value=9.5e-05 Score=48.67 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=22.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++...|+++|.+||||||+.+.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667899999999999999999864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.47 E-value=6.7e-05 Score=48.23 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+--.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999997654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.46 E-value=8e-05 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
...|+++|++||||||+++.+.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999997643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=56.09 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=37.3
Q ss_pred cCeEEEEEEcCCCCCCcch-hh-----hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPY-WR-----CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.++.+.++||||....... .. ...-.+|.+++|+|+..... .......+... -...-+|+||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 3568999999996554221 11 11225889999999854321 22222222111 12346788999964
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-05 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.2e-05 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999865
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-05 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998643
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..+|+++|.+||||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=48.98 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.9
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+...|++.|.+||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.44 E-value=8.2e-05 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998643
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.43 E-value=8.2e-05 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+...|+++|++||||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999999653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.2e-05 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.42 E-value=9.3e-05 Score=53.83 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999997554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.42 E-value=8.3e-05 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+.+-|+++|++|||||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566789999999999999999884
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.41 E-value=9.1e-05 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.41 E-value=8.7e-05 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00011 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.8e-05 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.1e-05 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--.++++|+.|||||||++.+.+-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.39 E-value=9.8e-05 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4445799999999999999999875
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=9.5e-05 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997643
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999764
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....|+++|.+||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.37 E-value=9.8e-05 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=47.34 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3346899999999999999999864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00013 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+...|+++|++||||||+.+.+.+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 335567899999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998643
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3346899999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.++++|+.|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=47.87 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++.-.++|+|++|||||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4556799999999999999999863
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+|+|+|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999875
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999863
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
...++++|++|||||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=51.09 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|+.|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=46.87 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.+.......+++.|++|+|||+++..+..
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 33333334566889999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00016 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00015 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999999764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00015 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+...|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999999864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999863
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0002 Score=46.66 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998653
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00019 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00019 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.++|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999863
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999997643
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00028 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=48.00 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+...|+++|++||||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~ 42 (182)
-.++++|++|||||||++.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4689999999999999999986543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.27 E-value=9.2e-05 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=16.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q 030149 17 EARILVLGLDNAGKTTILYRLQ-MG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~-~~ 40 (182)
.--++++|++||||||+++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3344899999999999999999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
---++++|++|||||||++.+.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=4.8e-05 Score=54.23 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999998654
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00021 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
++...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 56678999999999999999999764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00024 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.23 E-value=7.8e-05 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999998874
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00023 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++...|++.|.+||||||+.+.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999986
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00027 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457999999999999999998643
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+...|++.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4457899999999999999999753
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0003 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+...|+++|++||||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00018 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|++|+|||+|++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00027 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|++.|++||||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999964
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-+++|+|++|||||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00029 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33468999999999999999998643
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=47.35 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00032 Score=46.70 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|++.|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=51.64 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468899999999999999998643
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--.++++|+.|||||||++.+.+-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457899999999999999998644
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+.-.++|+|++|||||||++.+.+-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=47.20 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999853
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00021 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+.-.++++|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00036 Score=51.92 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 4445799999999999999999975
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00034 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...++++|.+|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3467899999999999999998643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
--.++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467899999999999999998643
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00036 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+..+|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00032 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00045 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00029 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357899999999999999998654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00037 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999975
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0003 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33467899999999999999998643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34579999999999999999986
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.-.++|+|++||||||+++.+++-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00038 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0004 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0003 Score=49.85 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=20.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-+++.|+||+|||++++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445778889999999999999964
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00046 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-|+++|+|||||+|....+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999998863
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|+|++||||||+...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999863
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00043 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++.+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00036 Score=49.69 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|+.||||||++..+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999863
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0081 Score=40.22 Aligned_cols=68 Identities=6% Similarity=-0.105 Sum_probs=44.5
Q ss_pred cCeEEEEEEcCCC-CCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 59 NNIKFQVWDLGGQ-TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
..+.+.++|+|+. ... .....+..+|.+|+++..+ ..+.......+..+.... +.++.+++|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999987 433 3344566799999999865 334444444444433211 456889999999654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0006 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999999753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00024 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-.++++|+.|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468999999999999999998643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|++|||||||++.+.+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3346899999999999999999864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00069 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00051 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+++|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999986
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0004 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00043 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998853
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00053 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00048 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00057 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|++.|.+||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00034 Score=48.44 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00055 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00057 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-+|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999853
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00059 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+|||+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00048 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.--++++|++|+|||||+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3468899999999999999987
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00077 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999753
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00055 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.+++.|+||+|||+++.++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999888864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00049 Score=44.99 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+|||||++++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00017 Score=48.46 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999863
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00053 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999999764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00059 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999975
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00024 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+--.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999998653
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00038 Score=49.83 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
......+...+.+.|+||+|||++++.++.
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 334456778999999999999999999864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0005 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++|+|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334689999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00097 Score=48.36 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+..+|+++|++|+||||+...+.+
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 345567899999999999999987753
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00047 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+--.++|+|+.|||||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34568999999999999999999754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0008 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|.+||||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00065 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.001 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++..-+.....-+++++|++|+|||++++.+..
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3344444445567899999999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00083 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999999754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00065 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00089 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0007 Score=49.16 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+-=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999998753
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00072 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 445689999999999999999976
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00089 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....|++.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00081 Score=42.67 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00091 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+||||++..+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00096 Score=48.61 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++|+.||||||++..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999863
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=48.64 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-++|+|..|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=46.82 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567999999999999999999753
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00098 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+.-.++++|+.|||||||++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 44578999999999999999986
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00098 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999865
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0014 Score=48.89 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|+||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00058 Score=48.33 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.+.|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998853
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|+.|||||||++.+.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0013 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999964
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00095 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.++++|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=48.45 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455899999999999999999974
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=49.80 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.+-=+++++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344579999999999999999998653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457899999999999999999754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0013 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0018 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-|++.|+||+|||++++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999999974
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0013 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999998765
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0018 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-....-|++.|+||+|||+|++++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35567899999999999999999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=44.67 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+--.++++|+.|||||||++.+.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34456899999999999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999754
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0016 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++++++|++||||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999998853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=43.43 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
....|+++|++|+|||+|...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
---++|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0017 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.3
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
|...--....-|++.|+||+|||+|++++.+
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3333334567899999999999999999974
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..-|+|+|++|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346899999999999999999754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|+.|+|||||++.+.+.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3447899999999999999999864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++|.|++|+|||++++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+ .+|+|+.|||||||++++.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5599999999999999985
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0081 Score=45.03 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..+..-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4567778899999999999999664
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4457999999999999999999753
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0021 Score=47.89 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....-|+++|.+||||||+.+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999998753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0016 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.--++++|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999987774
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998643
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00089 Score=42.07 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999998654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+...|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|+.|||||||++.+.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3346899999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0018 Score=43.62 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.002 Score=42.86 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0023 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.001 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457899999999999999988753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=45.62 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=59.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------C-CCcc-----cccc-----------cceeEEEE-----------EEcCe
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM------G-EVVS-----TIPT-----------IGFNVETV-----------QYNNI 61 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~------~-~~~~-----~~~t-----------~~~~~~~~-----------~~~~~ 61 (182)
+.-.++++|++|+||||++..+.. + +..- +.++ .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 445899999999999999999852 2 1100 1110 00000000 01456
Q ss_pred EEEEEEcCCCCCCcch----hhhccC--CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 62 KFQVWDLGGQTSIRPY----WRCYFP--NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+.++||+|....... ....+. ..+.+++++|++.. ...+..+ .......+ ..-+++||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~----~~~~~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHI----VKRFSSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHH----TTTTSSSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHH----HHHHhcCC-CCEEEEeCCCccc
Confidence 8999999997654321 112232 36778999987643 2223222 22211112 2346669999764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0023 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+|+|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.002 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
=.++++|+.|||||||++.+.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0025 Score=46.42 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-.+++.|++|+|||||++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.002 Score=42.14 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999999864
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0026 Score=50.96 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.++...+......++++.|+||+|||++++.+..
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 34444444445667899999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0024 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+--.++++|++|||||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998753
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.003 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=27.1
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++++...+......+++++|++|+|||++++.+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34444444556678899999999999999999864
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0021 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0032 Score=46.87 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....-|++.|+||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 45678999999999999999999753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+---+.|+|++|+|||||+..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
=.++++|+.|||||||++.+.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0011 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999964
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0033 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0025 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....|++.|++|+|||++++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999964
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0032 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-.+++.|+||+|||.|..++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 44599999999999999999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.-.++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4468899999999999999885
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0026 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....|++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....+++.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.003 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-|++.|+||+|||+|++++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 5667899999999999999999974
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0029 Score=42.28 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999973
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0028 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..-.+++.|++|+|||++++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.004 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...+++.|++|+|||+++..+..
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHH
Confidence 334599999999999999998864
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0042 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999753
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+++.|++|+|||+++..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 182 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-46 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-44 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 7e-41 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 8e-36 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-35 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-34 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-31 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 7e-31 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 1e-30 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 4e-30 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 6e-29 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-27 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-24 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 4e-24 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-23 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-23 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-22 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 1e-21 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-21 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-19 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-19 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 8e-19 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-18 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-18 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-16 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-16 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 1e-15 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-15 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-14 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-13 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 2e-13 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 5e-13 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 6e-13 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 7e-13 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 1e-12 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 5e-12 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-11 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-11 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-11 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 2e-11 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-10 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 4e-10 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-09 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 1e-09 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-09 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 8e-09 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-08 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 2e-08 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 3e-08 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 4e-08 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-08 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 6e-08 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 8e-08 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-07 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 2e-07 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 4e-07 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 5e-07 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 6e-07 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 1e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 1e-06 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 2e-06 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-06 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 3e-06 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 8e-06 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 8e-05 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 5e-04 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 148 bits (375), Expect = 1e-46
Identities = 93/172 (54%), Positives = 128/172 (74%)
Query: 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D+GGQ IRP WR Y+ TQ +I+VVD +D +R+ A+ E H I+ + E+R A++LIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
KQDLP A+ + E L L +I++R W + + A G+GL+EGL WL++ K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 143 bits (360), Expect = 2e-44
Identities = 110/179 (61%), Positives = 142/179 (79%), Gaps = 1/179 (0%)
Query: 2 GIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
G +F+ +F L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y N
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV 120
+K VWDLGGQTSIRPYWRCY+ +T A+I+VVDS+D +R+ A E H +L+EEEL+ A
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+L+FANKQD PGAL + V++ L L ++K+R W+I +SAIKGEG+ EGLDWL + +K
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 134 bits (337), Expect = 7e-41
Identities = 86/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)
Query: 2 GIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
GI+FTR++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 GILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
+F +WD+GGQ S+R W Y+ NT+ +I VVDS+D ER+ + ++E + +L E+LR A +
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
LIFANKQD+ + A +++ L+L IK+ QW I A+ GEGL +GL+W+ + LK
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 121 bits (303), Expect = 8e-36
Identities = 80/172 (46%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 8 LFSSLFG--NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQV 65
+ L ++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K V
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64
Query: 66 WDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125
WD+GGQ IRPYWR YF NT +IYV+DS+D +R E +LEEE+L VLIFA
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 126 NKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
NKQDL A + + E L LH I++R W I SA+ GEG+ +G++W+ +
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 120 bits (300), Expect = 1e-35
Identities = 82/164 (50%), Positives = 114/164 (69%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E R+L+LGLDNAGKTTIL + +V + PT+GFN++T+++ K +WD+GGQ S+R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
YWR YF +T +I+VVDS+D +R+ + E ++L EE L GA +LIFANKQDLPGAL
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
A+ EALEL I++ W I SA+ GE L G+DWL + + S
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 116 bits (290), Expect = 5e-34
Identities = 99/159 (62%), Positives = 127/159 (79%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
R YF NTQ +I+VVDS+D ER+ A++E +L E+ELR AV+L+FANKQDLP A++ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 VTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+T+ L LH +++R W I T A G+GL+EGLDWLSN L
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 110 bits (274), Expect = 2e-31
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 13/185 (7%)
Query: 6 TRLFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQ 64
+ + L K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
Query: 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124
+DLGG R W+ Y P I+++VD +D ERL+ +K+E +++ +E + +LI
Sbjct: 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120
Query: 125 ANKQDLPGALDDAAVTEALELH------------KIKNRQWAIFKTSAIKGEGLFEGLDW 172
NK D P A+ + + E L+ ++ R +F S +K +G EG W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180
Query: 173 LSNTL 177
++ +
Sbjct: 181 MAQYI 185
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 109 bits (274), Expect = 7e-31
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
R+L+LG +GK+TI+ ++++ VV T G Q + + F ++D+GGQ
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 75 RPYWRCYFPNTQAIIYVVDSS----------DTERLVIAKDEFHAILEEEELRGAVVLIF 124
R W F + AII+VV SS T RL A + F +I LR V++F
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 125 ANKQDLP 131
NKQDL
Sbjct: 121 LNKQDLL 127
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (268), Expect = 1e-30
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
++L LGLDNAGKTT+L+ L+ + + PT E + NIKF +DLGG R W
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAA 138
+ YFP I+++VD++D ER A+ E A+ EL+ +I NK D P A+ +A
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 VTEALELHKI-------KNRQWAIFKTSAIKGEGLFEGLDWLS 174
+ AL L R +F S + G E WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 106 bits (264), Expect = 4e-30
Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E + ++GL +GKTT + + G+ + PT+GFN+ + N+ ++WD+GGQ
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
R W Y AI+Y+VD++D E++ +K+E H +L++ +L+G VL+ NK+DLPGAL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
D+ + E + L I++R+ + S + + + L WL K
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 103 bits (256), Expect = 6e-29
Identities = 108/165 (65%), Positives = 133/165 (80%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSI
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
RPYWRCY+ NT A+IYVVDS D +R+ I+K E A+LEEEELR A++++FANKQD+ A+
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + +L L +K+R+W IFKTSA KG GL E ++WL TLKS
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 100 bits (250), Expect = 1e-27
Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E ++L+LG +GK+T + ++++ S +PT G ++ F++ D+GGQ S R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVI----------AKDEFHAILEEEELRGAVVLIFA 125
W F N +I+++V S+ +++++ +K F I+ + + V++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDL--------------------PGALDDAA---VTEALELHKIKNRQWAIFKTSAIK 162
NK+DL A + ++L+ ++ T A
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GEGLFEGLDWLSNTL 177
E + + +T+
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.0 bits (225), Expect = 4e-24
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GKT +L+R ST I TIG F + T++ + IK Q+WD GQ
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ I+ V D ++ + ++ I E +++
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
E + +TSA + L+ +K+
Sbjct: 128 QVSKERGE----KLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.5 bits (226), Expect = 4e-24
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+ +IL+LG +GK+T L ++++ PT G + + N+ F++ D+GGQ S R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLV----------IAKDEFHAILEEEELRGAVVLIFA 125
W F + +I+++V SS+ ++++ + + F I+ +++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQD 129
NK D
Sbjct: 119 NKTD 122
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.1 bits (220), Expect = 2e-23
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+IL++G GK+ +L R + + I TIG + + + +K Q+WD GQ
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ II V D +D ++ + E A +L+ NK D+
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERT-FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ A EA K ++SA + + E L+ ++
Sbjct: 123 VVTADQGEA----LAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.1 bits (222), Expect = 2e-23
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP 76
+L +GL ++GKT + RL G+ T +I + + N + DL G S+R
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 77 YWRC-YFPNTQAIIYVVDSSDTERLVI-AKDEFHAILEEEELRGAV--VLIFANKQDLPG 132
+ + +A+++VVDS+ +R V + + +L + +LI NKQD+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163
A + + LE R S +
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (210), Expect = 6e-22
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQYNNIKFQVWDLGGQTS 73
+IL++G GK+++L R + +V N K +WD GQ
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ Q +I V D + + V + + + V ++ NK D
Sbjct: 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-- 126
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ V L + + SA +G+ + L +
Sbjct: 127 --NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 85.4 bits (210), Expect = 1e-21
Identities = 33/195 (16%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E ++L+LG +GK+TI+ ++++ G + ++ F+++D+GGQ S R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAK----------DEFHAILEEEELRGAVVLIFA 125
W F AII+ V SD + ++ F +I + +++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 NKQ-----------------DLPGALDDAAVTEALELH------KIKNRQWAIFKTSAIK 162
NK+ + G+ ++ + ++ T A
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 163 GEGLFEGLDWLSNTL 177
+ + D +++ +
Sbjct: 177 TKNVQFVFDAVTDVI 191
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (204), Expect = 4e-21
Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 10/166 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVET----VQYNNIKFQVWDLGGQT 72
+++++G GKT +L R + G ++ I T+G + V +K Q+WD GQ
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
R Y+ + A++ + D ++ + I E + A++L+
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS--- 124
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ V K +TSA G + ++ LK
Sbjct: 125 -AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (195), Expect = 1e-19
Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
++L++G GK+ +L R I TIG + + + +K Q+WD GQ
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ + II V D +D E K I +L+
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL---- 123
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
D V + + +TSA+ + + ++ +K
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 168
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.6 bits (190), Expect = 5e-19
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTS 73
+IL++G + GKT+ L+R + V+ IK Q+WD GQ
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ I + D ++ E +D I V+L+
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ + + + F+ SA + + + L + +
Sbjct: 127 VVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.3 bits (189), Expect = 8e-19
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 9/166 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPT-----IGFNVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + G + V +K Q+WD GQ
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R R Y+ + V D + E + ++L K
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + +TSA+ GE + E + + +
Sbjct: 127 EVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILN 168
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.4 bits (189), Expect = 1e-18
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
+ I++ G N+GKT++L L V T+ + + Y+ + D G +R
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 77 YWRCYFPN----TQAIIYVVDSSDTERLVIAKDEF----HAILEEEELRGAVVLIFANKQ 128
Y + +I++VDS+ + + EF +I E G +LI NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121
Query: 129 DLPGALDDAAVTEAL--ELHKIKNRQWA---IFKTSAIKGEGLFEGLDWLSNT 176
+L A + + +AL E+ K+ R+ + + + LD L +T
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 1e-18
Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 18/175 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--------------FNVETVQYNNIKF 63
++L LG GKTT LYR + I T+G N + + +
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 64 QVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLI 123
Q+WD GQ R +F + + + D + + + ++ + +++
Sbjct: 67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
Query: 124 FANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
NK DLP + +A EL F+TSA G+ + + ++ L + +
Sbjct: 127 IGNKADLPDQREVNE-RQARELADKYG--IPYFETSAATGQNVEKAVETLLDLIM 178
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.6 bits (174), Expect = 1e-16
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 6/165 (3%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQY----NNIKFQVWDLGGQTS 73
++++LG GK++I+ R + PTIG T + + +KF++WD GQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
Y+ N QA + V D + + + A+ + E+ + ++ + NK D+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDMLQE 123
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ V + + F+TSA GE + + + +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 7e-16
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPT-----IGFNVETVQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L++ + ++ P G + V IK Q+WD GQ
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R R Y+ + V D + V+++ NK DL
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADLEAQ 124
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D EA + + + SA GE + + + +
Sbjct: 125 -RDVTYEEAKQFAEENG--LLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 1e-15
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GKT ++ R G + F ++TV+ N +K Q+WD GQ
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R + Y+ + A+I D + E + I + + VL+
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-- 124
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
V++ + + +TSA + + + + L+ L
Sbjct: 125 --RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 1e-15
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 7/162 (4%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ----YNNIKFQVWDLGGQ 71
+E +++VLG GK+ + + G + + + + ++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
Y N Q I V + + K I+ + V++ NK DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+ + +E L + + +TSA + E +
Sbjct: 122 SE-REVSSSEGRALAEEWGCPF--METSAKSKTMVDELFAEI 160
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (165), Expect = 2e-15
Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 9/167 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+ +L R E + F ++Q + IK Q+WD GQ
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y+ + V D + + + + + V+++ NK DL
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR-- 122
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
AV + + +TSA+ + E + + I
Sbjct: 123 -HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.0 bits (157), Expect = 3e-14
Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 11/172 (6%)
Query: 14 GNKEA--RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF-----NVETVQYNNIKFQVW 66
GNK ++++LG GK++++ R G+ + + +KF++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126
D GQ Y+ QA I V D ++ E AK+ + + V+ + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGN 119
Query: 127 KQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
K DL + AV + +TSA + E ++ L
Sbjct: 120 KADLA---NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 63.0 bits (152), Expect = 2e-13
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSI 74
+++++G GK+ + + E V + + ++ + D GQ
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
YF + + + V ++ E D IL +E L+ NK DL
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE--- 122
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
D V+ ++ +TSA + + L +++
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 2e-13
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 16/172 (9%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQ 64
SSLF ++++LG GK++++ R + + V + + Q
Sbjct: 4 SSLF-----KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 65 VWDLGGQTSIRPYWRCYFPNTQAII---YVVDSSDTERLVIAKDEFHAILEEEELRGAVV 121
+WD GQ R ++ + + V DS + L K EF + +E
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 122 LIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+I NK D+ + TE + N + F+TSA + +
Sbjct: 119 VILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 5e-13
Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L + TIG + IK Q+WD GQ S
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R R Y+ + V D + E + V+++ NK DL
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLE-- 121
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
V + +TSA + E + +
Sbjct: 122 -SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 6e-13
Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQY----NNIKFQVWDLGGQTS 73
+++ LG + GKT+++ R +T TIG + + I+ Q+WD GQ
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
R Y ++ A + V D ++ + E ++L+ NK DL
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLA-- 118
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
D V+ K K +TSA G + + ++ L
Sbjct: 119 -DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (147), Expect = 7e-13
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-----IKFQVWDLGGQTS 73
++++LG GKT+++ R + T + N + +WD GQ
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
Y+ ++ I V D +D + K+ + + + ++
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
E+ ++ + TSA + +G+ E L +
Sbjct: 125 HVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.4 bits (145), Expect = 1e-12
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 9/148 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL------GGQT 72
+I+V+G N GKT + YR G + +I + + G +
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
+ + Y+ N A+++V D ++ + ++ NK DL
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSA 160
A+ A + + +F+TSA
Sbjct: 124 AIQVPT-DLAQKFADTHS--MPLFETSA 148
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (142), Expect = 5e-12
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 5/164 (3%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
++++LG GKT+++ + + TIG + T + + Q+WD GQ
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+ ++ + V D + L + R F +
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ T+ + F+TSA + + + ++
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 7/168 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN----NIKFQVWDLGG 70
++ +++V+G GK+ + + VS + T + + + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
Q Y + V +D + F IL ++ V++ NK DL
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
V + + A F+ SA + E + L ++
Sbjct: 124 E---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 1e-11
Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 9/169 (5%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQYNNIKFQVWDLGG 70
+E ++ +LG GK++I++R I + Q KF +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
R Y+ + A I V D + E K+ + + V +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122
Query: 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179
+ + +TSA + E +S + S
Sbjct: 123 DVREVMERDAKDY----ADSIHAIFVETSAKNAININELFIEISRRIPS 167
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (138), Expect = 1e-11
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 10/160 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI-----KFQVWDLGGQTS 73
+++V+G GK++++ R G + + + +WD GQ
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+ Y+ QA + V ++D E ++ E + NK DL
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLL-- 119
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
DD+ + K + ++TS + + E +L
Sbjct: 120 -DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 2e-11
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 8/167 (4%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIK---FQVWDLGGQ 71
E +++V+G GK+ + +L V PTI + + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
Y + + V ++T+ I ++ +++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
++ + ++ +TSA +G+ + L ++
Sbjct: 122 ARTVESRQAQD----LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 2e-10
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 6/167 (3%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVE---TVQYNNIKFQVWDLGGQ 71
+E +++VLG GK+ + + G V PTI + V ++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
Y N Q V + +D IL ++ +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 GALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ N + ++SA + E L +
Sbjct: 122 DERVVGKEQGQNLARQWCNCAF--LESSAKSKINVNEIFYDLVRQIN 166
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 4e-10
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72
+ R+ V G GK++++ R G + T+ V + + Q+ D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
R A I V + + L K + I E + ++ ++ +
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ +EA L + + +TSA + E L N K
Sbjct: 122 PSREVQSSEAEALARTWKCAF--METSAKLNHNVKELFQELLNLEK 165
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 1e-09
Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 21/175 (12%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQ 71
+ + +V+G GKT +L F+ + + +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 72 TSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131
+P T + + +++ + +++ K DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 132 GALDDAAVTEALELHKIKNRQWAI-------------FKTSAIKGEGLFEGLDWL 173
DD E L+ K+ + + SA+ GL D
Sbjct: 123 ---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 1e-09
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
Y+ Q I + D + + ++ +++ NK D+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD- 121
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+A + + + + SA + WL+ L
Sbjct: 122 ----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.4 bits (124), Expect = 2e-09
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG-----FNVETVQYNNIKFQVWDLGGQT 72
++++LG GKT++++R + TIG V QVWD GQ
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG---AVVLIFANKQD 129
+ ++ + V D ++ K L + +I NK D
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123
Query: 130 LPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+ + A EL K +F TSA + + +
Sbjct: 124 AEESKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEI 166
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 50.5 bits (119), Expect = 8e-09
Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 23/183 (12%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
A I+ G N GK+T++YRL G+ V G + ++ ++ D+ G +
Sbjct: 1 ATIIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGL 59
Query: 78 WRCYFPNTQA--------------IIYVVDSSDTERLVIAKDEFHAILEEE-------EL 116
+ + + +V +I + E + +
Sbjct: 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 119
Query: 117 RGAVVLIFANKQDLPGALDDAAVTEALELHK-IKNRQWAIFKTSAIKGEGLFEGLDWLSN 175
++ NK D + + A + + SA G+ + + +
Sbjct: 120 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 179
Query: 176 TLK 178
++
Sbjct: 180 VIR 182
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFN---VETVQYNNIKFQVWDLGGQTS 73
+++++G GKT +L + +PT+ N V ++ +WD G
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+P+T I+ + L +++ ++ +++ NK+DL
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121
Query: 134 LDDAAVTEALELHKIKNRQW----------AIFKTSAIKGEGLFEGLDWL 173
++ +K + + SA +G+ E +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 2e-08
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGG 70
+K +I +LG + GK+++ + G+ V + I + TV Q+ D G
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
Q + + Y + I V + + + K +L+ +++ NK+DL
Sbjct: 62 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121
Query: 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
+ E L + N + ++SA + + + +
Sbjct: 122 HME-RVISYEEGKALAESWNAAF--LESSAKENQTAVDVFRRI 161
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.9 bits (115), Expect = 3e-08
Identities = 27/160 (16%), Positives = 44/160 (27%), Gaps = 11/160 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+++V+G GK+ + + V I + V D GQ
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
Y + V +D IL ++ +++ ANK DL
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM--- 122
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKG----EGLFEGL 170
VT +TSA + F L
Sbjct: 123 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 162
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 4e-08
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 7/166 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSI 74
R++V+G GK+ + + V+ + + + + D GQ
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
Y + + V +D IL ++ +++ NK DL
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD--- 123
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
VT+ + + + SA + + L ++
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 48.1 bits (113), Expect = 5e-08
Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 8/170 (4%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE-----TVQYNNIKFQVWDLGGQT 72
A + ++G NAGK+++L + P + +F + D+ G
Sbjct: 2 ADVGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 73 SIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132
+ I + +E+ + +
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 133 ALDDAAVTEALELHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
D EA++ + A+ SA+ G GL + L ++S
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 170
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 6e-08
Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 6/163 (3%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR 75
++L+LG GK+ + E G + V+D+ Q R
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
A + V +D A + + + +++ NK DL
Sbjct: 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV---R 119
Query: 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
V+ +TSA + + + ++
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 8e-08
Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 17/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIK---FQVWDLGGQTSI 74
+ +V+G GKT +L + S +PT+ N + ++D GQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
+P T + K+++ + L+ + DL
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDP 123
Query: 135 DDAAVT-----------EALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
A +L + + SA+ +GL D
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKA-VKYVECSALTQKGLKNVFDEA 172
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (111), Expect = 1e-07
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNNIK---FQVWDLGGQTS 73
+I+V+G GKT +L+ + +PT+ N + + +WD G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+P++ A++ D S E L ++ ++E ++L+ K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRTD 121
Query: 134 LDDAAVTEALELHKIKNRQWAI----------FKTSAIKGE 164
+ + Q A + SA++ E
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 162
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 2e-07
Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 10/161 (6%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG--QTS 73
E ++ + G GK+ ++ R + PT+ + + ++
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133
+ + + V D +D + + E ++ + +++ NK DL
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-- 119
Query: 134 LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG----LFEGL 170
V+ A ++ SA GEG +F L
Sbjct: 120 -HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 45.5 bits (106), Expect = 4e-07
Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 4/161 (2%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF--QVWDLGGQTSIRP 76
++++ G NAGK+++L L E G + ++ + + +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD 136
+ ++ +D ++ A+ E + + A
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 137 AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
E L + ++ A+ + SA GEG+ + L ++
Sbjct: 123 DITGETLGMSEVNG--HALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 45.1 bits (105), Expect = 5e-07
Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 3/164 (1%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
A +L++G N GK+T+ +L + G + VQ + T
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 60
Query: 78 WRCYFPNTQAIIYVVDSSDTERLVI--AKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
+ + ++ LV+ + E+E L + + + +
Sbjct: 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 136 DAAVTEALELHKIKNRQWA-IFKTSAIKGEGLFEGLDWLSNTLK 178
+ E ++ + + SA L L+ + L+
Sbjct: 121 NLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 45.3 bits (106), Expect = 6e-07
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 10/173 (5%)
Query: 18 ARILVLGLDNAGKTTILYRL--QMGEVVSTIP-TIGFNVETVQY-NNIKFQVWDLGGQTS 73
A + ++G + GK+T+L + ++ T+ N+ V+ + F + DL G
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP-- 131
I + + + + + + P
Sbjct: 62 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121
Query: 132 ---GALDDAAVTEALELHKIK-NRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180
+D E LE K K + +F SA+ EGL E L ++N L++
Sbjct: 122 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (103), Expect = 1e-06
Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 9/166 (5%)
Query: 20 ILVLGLDNAGKTTILYRL--QMGEVVSTIP-TIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
I ++G N GK+T+L +L Q + S T + + ++ +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEF----HAILEEEELRGAVVLIFANKQDLPG 132
+A + + V+ + +L + A V++ NK D
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 133 ALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ A + L+ + I SA G + + L
Sbjct: 128 --EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 44.3 bits (103), Expect = 1e-06
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 14/167 (8%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIG---------FNVETVQYNNIKFQVWDLGG 70
+ ++G N GK+T+L L +V P Q +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 71 QTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130
+ + + VV D +DE A + + +L+ NK D
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 131 PGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177
+ EA++ + + SA+ + E L +
Sbjct: 128 AKYPE-----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 2e-06
Identities = 18/158 (11%), Positives = 54/158 (34%), Gaps = 3/158 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
E R+ VLG +GK+++++R G T + + + + + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135
+ + ++ ++ ++ + V + L E G + + + + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 136 DAAVTEALELHKIKNRQWAIFKTSAIKGEG---LFEGL 170
++ + ++T A G +F+ +
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 10/170 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
I + G N GK++ + L + ++ T N + V G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 74 IRPYWRCYFPNTQAIIYVVDSSDTERLVI-----AKDEFHAILEEEELRGAVVLIFANKQ 128
+ + + I + ++ ++ + E + G V++ A K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
D + + + + + S+ +G E + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 3e-06
Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 18/169 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+ +V+G GKT +L V T+ TV ++D GQ
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
+P T + + K+E+ L+E L+ + DL
Sbjct: 71 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDP 129
Query: 135 DDAAVTEALELHKI----------KNRQWAIFKTSAIKGEG---LFEGL 170
A ++ I + + SA+ +G +F+
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 8e-06
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET----VQYNNIKFQVWDLGGQTSI 74
R++++G N GK+T+L RL + G + + I F++ D G S
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL 134
+ + + + ++ A + R + +
Sbjct: 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKV 117
Query: 135 DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWL 173
D E+ + K SA+KGEGL + + +
Sbjct: 118 DVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (90), Expect = 8e-05
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDLGGQTSI 74
++ ++G N GK+T+ + E P G + V + K+ D G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 75 RPYWRCYFPNTQAIIYVVDSSDTERLVI-------AKDEFHAILEEEELRGAVVLIFANK 127
V + +VI + + E RG ++ NK
Sbjct: 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNK 129
Query: 128 QDLPGALDDAAVTEALEL-HKIKNRQWA-IFKTSAIKGEGLFEGLDWLSNTLKS 179
DL + K+ ++ + TSA KG + +D ++ S
Sbjct: 130 WDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 8/170 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGFNVETVQYNN----IKFQVWDL 68
N R++++G GK+T+ + S +G + + D+
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 69 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128
+ + +V S E L + +I +
Sbjct: 61 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120
Query: 129 DLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178
+ +V+E + + ++ +TSA + E + + ++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKF--IETSAAVQHNVKELFEGIVRQVR 168
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 5e-04
Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 11/172 (6%)
Query: 15 NKEARILVLGLDNAGKTTILYRL---QMGEVVSTIPTIGFNVETVQYNN-------IKFQ 64
+ + G NAGK++ L L + S P + + + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73
Query: 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIF 124
++ + + + + KD ++E VL+
Sbjct: 74 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133
Query: 125 ANKQDLPGALDDAAVTEALELHKIKNRQWA-IFKTSAIKGEGLFEGLDWLSN 175
K D + A + + + S++K +G+ + L
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.97 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.91 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.9 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.9 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.86 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.84 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.83 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.82 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.82 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.82 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.82 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.69 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.65 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.65 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.61 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.58 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.26 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.19 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.19 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.17 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.16 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.05 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.65 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.31 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.28 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.24 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.21 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.15 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.14 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 98.05 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.97 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.91 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.9 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.86 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.86 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.81 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.8 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.79 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.77 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.75 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.66 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.62 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.61 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.6 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.59 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.59 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.56 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.54 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.53 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.52 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.52 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.51 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.5 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.49 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.48 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.48 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.48 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.47 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.47 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.45 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.44 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.44 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.43 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.43 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.42 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.41 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.4 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.39 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.35 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.34 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.33 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.33 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.32 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.31 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.3 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.3 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.29 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.28 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.28 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.26 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.23 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.21 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.21 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.19 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.14 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 97.13 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.12 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.12 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.12 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.11 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.09 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.07 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.05 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.96 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.89 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.81 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.81 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.77 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.76 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.74 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.69 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.69 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.62 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.51 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.5 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 96.46 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.45 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.39 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.29 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.29 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.26 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.25 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.25 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.22 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.16 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.16 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.15 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 96.13 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 96.1 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.09 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.08 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.06 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.05 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.0 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.97 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.96 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.96 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.93 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.91 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.89 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.88 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.77 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.75 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.58 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.5 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.44 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.41 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.38 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.36 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.35 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 95.32 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 95.3 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.29 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.24 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.17 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.06 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.92 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.82 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.76 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.56 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.34 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.22 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.5 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.4 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.02 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.9 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.32 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 92.3 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.25 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.35 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.18 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 91.11 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 90.91 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.78 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.46 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 89.92 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.0 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.66 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.44 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.25 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.8 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.79 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 87.63 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 87.37 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 86.66 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.94 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 84.49 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 84.27 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.01 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 81.65 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 81.6 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.56 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=2e-39 Score=215.18 Aligned_cols=179 Identities=61% Similarity=1.093 Sum_probs=158.5
Q ss_pred ccchHHHhhhhcC-CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhh
Q 030149 2 GIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|..|+++++.++. .+.+||+++|++|||||||++++..+.+....||.+.........+..+.+||+||++.+...+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 4568888887644 788999999999999999999999888888889999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecc
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (182)
++..+|++++|+|++++.++.....++..........+.|+++++||+|+......+++.+.+........++++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 99999999999999999999999999988877777778999999999999887778888888877777777889999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|+|+++++++|.+.+.+.
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=2.8e-38 Score=208.02 Aligned_cols=169 Identities=54% Similarity=1.034 Sum_probs=154.1
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+++++..+.+||+++|++|||||||++++..+.+....+|.+............+.+||+||+......+..+++.++++
T Consensus 4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 83 (173)
T d1e0sa_ 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 83 (173)
T ss_dssp HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred hhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence 34445688999999999999999999999999888888899998888888999999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
++|+|+++.+++.....++....+.....+.|+++++||+|+.......++...++.......++.+++|||++|+||+|
T Consensus 84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e 163 (173)
T d1e0sa_ 84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163 (173)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence 99999999999999999999888777777899999999999988778888888887777777788999999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+|++|.+.+
T Consensus 164 ~~~~l~~~~ 172 (173)
T d1e0sa_ 164 GLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=9.8e-38 Score=203.98 Aligned_cols=165 Identities=50% Similarity=0.882 Sum_probs=150.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|++|||||||+++|.+..+....||.+.....+...+..+.+||+||++.+...+..+++.++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46899999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHH
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~ 175 (182)
+..++.....++..........+.|+++|+||+|+.+....++....+.........+++++|||++|+|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988888877766778999999999999887777888777776666777889999999999999999999999
Q ss_pred HHhhc
Q 030149 176 TLKSI 180 (182)
Q Consensus 176 ~~~~~ 180 (182)
++.++
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 88753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=1.2e-37 Score=205.64 Aligned_cols=164 Identities=48% Similarity=0.856 Sum_probs=150.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+.+.+||+++|++|||||||++++.++++....++.+.+...+.+.+..+.+||++|++.+...+..+++.+|++++|+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 91 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence 44678999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
|+++..++.....++..........+.|+++++||+|+........+.+.+.........+++++|||++|+|++++|++
T Consensus 92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~ 171 (176)
T d1fzqa_ 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 171 (176)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999988887777778999999999999887777888887776666777889999999999999999999
Q ss_pred HHHH
Q 030149 173 LSNT 176 (182)
Q Consensus 173 l~~~ 176 (182)
|.+.
T Consensus 172 l~~~ 175 (176)
T d1fzqa_ 172 VCKN 175 (176)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=2e-37 Score=202.23 Aligned_cols=162 Identities=34% Similarity=0.693 Sum_probs=149.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+.+||+++|++|+|||||++++..+.+.. +.||.+.....+..++..+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 46899999999999999999999988866 78899999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
++.+++.....++..+......++.|+++|+||.|+.+.....++.+.+.........++++++||++|+|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999998887788999999999999988778888888888777777888999999999999999999998
Q ss_pred HHH
Q 030149 175 NTL 177 (182)
Q Consensus 175 ~~~ 177 (182)
+.+
T Consensus 161 ~~~ 163 (164)
T d1zd9a1 161 QHS 163 (164)
T ss_dssp HTC
T ss_pred Hcc
Confidence 753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-36 Score=197.57 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||++++.+..+....++.+... ..+.. ....+.+||++|++.+..++..+++.+|++|+|+|+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 699999999999999999999887766666555433 23444 447889999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~ 172 (182)
+++++++.+..|+..+.........|+++|+||+|+.+... ..+.. .+ ....+++|++|||++|.|++++|+.
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-AC----AVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHH-HH----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999887776667789999999999865322 22222 22 2334567999999999999999999
Q ss_pred HHHHHhhc
Q 030149 173 LSNTLKSI 180 (182)
Q Consensus 173 l~~~~~~~ 180 (182)
|.+.+..+
T Consensus 157 l~~~i~~~ 164 (168)
T d2gjsa1 157 VVRQIRLR 164 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-36 Score=198.06 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=133.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc-eeEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+.+||+++|++|||||||++++..+.+.. +.+|.. .....+..+ ...+.+||++|++++...+..+++.+|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 45788999999999999999999999988776 555544 223334444 46788899999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
++|+|.+++.++..+..|+..+.......+.|+++|+||+|+.... ..++. ..+ .+..+++|++|||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAF----GASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhh-hHH----HHhcCCEEEEEeCCCCcCH
Confidence 9999999999999999999998877666789999999999986432 22222 222 2334678999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 030149 167 FEGLDWLSNTLKSIG 181 (182)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (182)
+++|+.|++.+.+..
T Consensus 157 ~e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 157 DEAFEQLVRAVRKYQ 171 (173)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-35 Score=192.98 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=131.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEE-EE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETV-QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+++|++|||||||++++..+++.. +.||.+...... .. ....+.+||++|++.+...+..+++.+|++|+
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 467899999999999999999999999877 677776443322 22 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++++|+.+..|+..+.+....++.|+++|+||+|+.... ..++...... ...+++|++|||++|+||++
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e 156 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHH
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHH
Confidence 99999999999999999998877666789999999999996432 2222222221 22457899999999999999
Q ss_pred HHHHHHHHHh
Q 030149 169 GLDWLSNTLK 178 (182)
Q Consensus 169 l~~~l~~~~~ 178 (182)
+|++|.+++.
T Consensus 157 ~F~~l~~~i~ 166 (167)
T d1c1ya_ 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=4.1e-34 Score=188.58 Aligned_cols=176 Identities=49% Similarity=0.886 Sum_probs=154.5
Q ss_pred ccchHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc
Q 030149 2 GIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
|..|+++. ++++++.+||+|+|.+|||||||++++.++++....++.+.........+..+.+||+++.+.....+..+
T Consensus 1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 79 (177)
T d1zj6a1 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79 (177)
T ss_dssp CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence 45677776 78889999999999999999999999999999888888888888888899999999999999999999999
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEeccc
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (182)
+..++++++++|.++.+++.....+...........+.|+++|+||+|+.......++.+.+.........++++++||+
T Consensus 80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 159 (177)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence 99999999999999999999888877777777777789999999999998887788888888777777788899999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030149 162 KGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 162 ~~~gi~~l~~~l~~~~~ 178 (182)
+|+|+++++++|.+++.
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-36 Score=194.82 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=132.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.+||+++|++|+|||||++++.++.+.. +.||.+... ..+..+ ...+.+||++|.+.+..++..+++.+|++|+
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 567899999999999999999999888776 678887553 233443 4678899999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++..+..|+..+.+.....+.|+++|+||+|+... ...++..+. .+..+++|++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHH-----HHHcCCEEEEEecCCCCCHHH
Confidence 9999999999999999999988777778999999999998643 233333222 223356799999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+.|+..+.+
T Consensus 157 ~f~~li~~~~K 167 (167)
T d1xtqa1 157 VFRRIILEAEK 167 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999987753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.4e-35 Score=193.24 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=127.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. +.++.+.+... +.. ....+.+|||||++++..++..+++.+|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35899999999999999999999888766 66666644443 333 34689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....++..... ......|+++++||+|+.+.. ..++... +. +..+++|++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~-~~----~~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQ-LA----DHLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHH-HH----HHcCCEEEEecCCCCcCHHH
Confidence 9999999999999888877644 345689999999999986532 2233322 22 23356899999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|++|.+.+.++
T Consensus 158 ~f~~l~~~i~ek 169 (169)
T d3raba_ 158 TFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999988653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-35 Score=192.93 Aligned_cols=156 Identities=21% Similarity=0.334 Sum_probs=127.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+.+.. +.||.+........ ....+.+||++|+..+..++..+++++|++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5799999999999999999999988776 77888866655544 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|++++++|+.+..|+..+.... .+.|+++|+||+|+......++. .......+++|+++||++|.||+++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~-----~~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTS-----HHHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHH-----HHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876653 58999999999999765433221 122344577899999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
+|.+.+.+
T Consensus 156 ~l~~~l~~ 163 (170)
T d1i2ma_ 156 WLARKLIG 163 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 99998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=190.48 Aligned_cols=161 Identities=14% Similarity=0.253 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+|+|++|+|||||++++..+.+.. +.||.+.... .... ....+.+||++|++.+..++..+++++|++|+|+
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4689999999999999999999998876 6777763332 2222 4568999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---------ccc-cCCccEEEEecccC
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL---------HKI-KNRQWAIFKTSAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~S~~~ 162 (182)
|++++++|+....|+........ ++.|+++|+||+|+.+.....+....... ..+ .....+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999988888776543 67999999999999754222111111111 011 11235799999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030149 163 GEGLFEGLDWLSNTLK 178 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~ 178 (182)
|.||+++|+.+.+++.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=192.14 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=127.5
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAI 88 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++...+||+++|++|+|||||++++..+.+.. +.||.+..... +.. ....+.+||++|++.+...+..+++.+|++
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ 84 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 84 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence 44677999999999999999999999988766 67777633332 222 347789999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc---------cccc-cCCccEEEEe
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE---------LHKI-KNRQWAIFKT 158 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~ 158 (182)
++|||++++++|+....|+....+.. ..+.|+++|+||+|+.+............ ...+ ....++|++|
T Consensus 85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~ 163 (185)
T d2atxa1 85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163 (185)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999888888777654 46899999999999975321111110000 0011 1123579999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q 030149 159 SAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~ 178 (182)
||++|.||+++|+.+.+++.
T Consensus 164 SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 164 SALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHc
Confidence 99999999999999988763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=2.1e-35 Score=193.29 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=128.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|+|||||++++..+++.. +.||.+... ..+.. ....+.+||++|++++..++..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 35799999999999999999999888766 778887543 23334 346788999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|.++++++..+..|+..+.+....++.|+++|+||+|+.+. ...++..... +..+++|++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHHH
Confidence 999999999999999999887766678999999999998643 2233332222 233567999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|++|++.+.+
T Consensus 158 f~~l~~~i~~ 167 (168)
T d1u8za_ 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999998865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-35 Score=193.65 Aligned_cols=155 Identities=20% Similarity=0.326 Sum_probs=127.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+.+.. +.||.+........ ....+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999888766 77888755444433 347889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++.+..|+..+.... .+.|+++|+||+|+.+.. ..++.. .+. +..+++|+++||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE-GLA----KRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH-HHH----HHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhH-HHH----HHcCCEEEEeccCCCcCHHHH
Confidence 99999999999999988876543 478999999999986432 223322 222 234568999999999999999
Q ss_pred HHHHHHHHh
Q 030149 170 LDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~~~ 178 (182)
|+.|.+.+.
T Consensus 155 f~~l~~~~l 163 (164)
T d1z2aa1 155 FKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-36 Score=194.72 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=129.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee-EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+++|++|||||||+++++++.+.. +.||.+.. ...... ....+.+||++|++.+...+..+++++|++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 478999999999999999999999988776 66676633 222333 34688999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....|+..+......++.|+++|+||+|+.... ..++. ..+. +..+++|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~e~Sak~g~~i~e 155 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG-RALA----EEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH-HHHH----HHHTSCEEEECTTCHHHHHH
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH-HHHH----HHcCCeEEEECCCCCcCHHH
Confidence 99999999999999999988776666789999999999986432 22222 2222 22345799999999999999
Q ss_pred HHHHHHHHHh
Q 030149 169 GLDWLSNTLK 178 (182)
Q Consensus 169 l~~~l~~~~~ 178 (182)
+|+.|.+++.
T Consensus 156 ~f~~i~~~i~ 165 (167)
T d1kaoa_ 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=183.28 Aligned_cols=160 Identities=62% Similarity=1.088 Sum_probs=144.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|++|||||||++++.++++....++........+.....+.+||++|.......+..++..++++++|+|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999998887766666666667777899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHHHHH
Q 030149 98 ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
.++.....++.+..........|+++++||.|+......+++.........+..++++++|||++|+|++++|++|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999998887778899999999999988878888888777777777888999999999999999999998864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-35 Score=190.96 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=122.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++..+.+.. +.||.+........ ....+.+||++|++++..++..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 46899999999999999999999988877 77777755544433 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++||+.+..|+..+... .....|+++++||+|+... ...++.... ++..+++|++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~-----a~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHH-----HHHcCCeEEEEecCCCcCHHH
Confidence 99999999999999998876544 3467899999999998643 233333322 233457899999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+.|.+.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-35 Score=191.05 Aligned_cols=158 Identities=23% Similarity=0.291 Sum_probs=129.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.+||+++|++|+|||||++++..+++.. +.+|.+........ ....+.+||++|++.+..++..+++.+|++|
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 478999999999999999999999988876 67777765554433 3466789999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|+++++++..+..|+...... ...+.|+++|+||+|+.+. ...++..+. ....+++|++|||++|.||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY-----ADSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHH-----HHHcCCEEEEEecCCCCCHH
Confidence 999999999999999988776544 4468999999999999643 233333222 23346789999999999999
Q ss_pred HHHHHHHHHHh
Q 030149 168 EGLDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~l~~~~~ 178 (182)
++|..|.++++
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999998874
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-35 Score=191.78 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=129.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccce-eEEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++++||+++|++|||||||++++..+.+.. +.||.+. ....+..+ ...+.+||++|..++...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 356899999999999999999999888766 6777663 23333443 4689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|.+++++++.+..|+..+.........|+++|+||+|+... ...++..+. .+..+++|++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL-----ARQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH-----HHHcCCEEEEEcCCCCcCHHH
Confidence 9999999999999999998887776778999999999998654 233333222 233457899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 030149 169 GLDWLSNTLKSIG 181 (182)
Q Consensus 169 l~~~l~~~~~~~~ 181 (182)
+|+.|.+.+.+..
T Consensus 158 ~f~~l~~~i~k~~ 170 (171)
T d2erya1 158 AFHELVRVIRKFQ 170 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-35 Score=190.30 Aligned_cols=156 Identities=20% Similarity=0.319 Sum_probs=128.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|||||||++++.++++.. +.++.+........ ....+.+||++|++.+...+..+++.+|++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 589999999999999999999888776 67777755554443 3478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|.+++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+. .+..+++|++|||++|+||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHH-----HHHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999999876543 368999999999998643 222222222 23345679999999999999999
Q ss_pred HHHHHHHhh
Q 030149 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~~~~ 179 (182)
++|+++|+.
T Consensus 155 ~~i~~~l~g 163 (164)
T d1yzqa1 155 RRVAAALPG 163 (164)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhhCC
Confidence 999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-35 Score=191.72 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=131.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|+|||||++++.++.+.. +.||.+... ..+.. ....+.+||++|++.+..++..+++.+|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 56899999999999999999999988766 667766433 22333 457889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCC-ChHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGE-GLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gi~~ 168 (182)
+|++++++|..+..|+..+.+.....+.|+++++||+|+.... ..++..+.. +..+++|+++||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHHH
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH-----HHcCCEEEEEcCCCCCcCHHH
Confidence 9999999999999999998877666789999999999987542 333333222 2234679999999986 9999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|+.|.+.+.++
T Consensus 158 ~F~~l~~~i~~~ 169 (169)
T d1x1ra1 158 TFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988763
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-34 Score=188.51 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=131.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEE-E--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ-Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~-~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|||||||++++.++.+.. +.++.+....... . ....+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 56899999999999999999999988777 5667764433322 2 457789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|.+++.+++....|+..+.+.....+.|+++|+||+|+.......+..+.+. +..+++|++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999999888776667899999999999965433333333332 22346799999999999999999
Q ss_pred HHHHHHhh
Q 030149 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~~~~ 179 (182)
.|.+.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-35 Score=191.84 Aligned_cols=159 Identities=23% Similarity=0.326 Sum_probs=126.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|||||||++++..+.+.. +.++.+.. ...+.+. ...+.+|||||++.+..++..++++++++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 35899999999999999999999988766 55555543 4444443 4678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|.+++.++.....|+..+.+. .....|+++|+||+|+.... ..++..+ +. ...++++++|||++|+||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~-~~----~~~~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEE-FS----EAQDMYYLETSAKESDNVEK 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHH-HH----HHHTCCEEECCTTTCTTHHH
T ss_pred eeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHH-HH----HhCCCEEEEEccCCCCCHHH
Confidence 99999999999999999887654 33578999999999986432 2233222 22 23356799999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|.+|+..+...
T Consensus 158 ~f~~l~~~l~~~ 169 (171)
T d2ew1a1 158 LFLDLACRLISE 169 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988776543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-35 Score=192.65 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=126.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE-EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||+++++.+.+.. +.||.+..... ...+ ...+.+||++|++.+...+..+++.+|++++|+
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~ 81 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 81 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence 5799999999999999999999988766 77888754333 2333 367888999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEE-ELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+++++++..+..|+..+.+.. ...+.|+++|+||+|+... ...++..+ +. +..+++|++|||++|.||+++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-~~----~~~~~~~~e~Sak~~~~v~e~ 156 (171)
T d2erxa1 82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA----RTWKCAFMETSAKLNHNVKEL 156 (171)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHHH
T ss_pred ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH-HH----HHcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999998876543 3357899999999998543 22233322 22 234568999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|+.|.+.+.++
T Consensus 157 f~~l~~~~~~~ 167 (171)
T d2erxa1 157 FQELLNLEKRR 167 (171)
T ss_dssp HHHHHHTCCSS
T ss_pred HHHHHHHHHHh
Confidence 99999876543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.5e-35 Score=190.55 Aligned_cols=161 Identities=22% Similarity=0.371 Sum_probs=128.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+.+.. +.||.+.... .+.. ....+.+||++|++.+..++..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 5899999999999999999999998777 7778875443 4444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|.+++.+++....|+...... .....|+++++||+|+.+......+.....+..++..+++|++|||++|.||+++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 9999999999999998876554 335789999999999854322222211111222234467899999999999999999
Q ss_pred HHHHHHh
Q 030149 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~~~ 178 (182)
.|.+++.
T Consensus 162 ~i~~~i~ 168 (170)
T d1ek0a_ 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHhc
Confidence 9987764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-34 Score=189.06 Aligned_cols=157 Identities=23% Similarity=0.339 Sum_probs=128.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++..+++.. +.+|.+........ ....+.+||++|++.+..++..+++++|++++|
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 85 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence 5799999999999999999999988776 67777766554433 347889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|.++.+++.....|+..+.+. ..++.|+++|+||+|+.... ..++. +.+ .+..+++|++|||++|+||+++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~-~~~----~~~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 86 YDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEA-QSY----ADDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH-HHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred eccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHH-HHH----HHhcCCEEEEeeCCCCCCHHHH
Confidence 9999999999999998887654 34689999999999986432 22222 222 2334578999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.|.+.+.+
T Consensus 160 f~~l~~~i~~ 169 (170)
T d1r2qa_ 160 FMAIAKKLPK 169 (170)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHhh
Confidence 9999887653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-34 Score=187.81 Aligned_cols=156 Identities=18% Similarity=0.291 Sum_probs=124.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. +.++.+.. ......+ ...+.+||++|++.+..++..+++.+|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 35899999999999999999999888776 44544433 3334443 4689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++.+++.....|+..+.+. .....|+++++||+|+.... ..++... + .+..++++++|||++|+||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQ-F----AEENGLLFLEASAKTGENVED 156 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988877544 44678999999999985432 2222222 2 223456899999999999999
Q ss_pred HHHHHHHHH
Q 030149 169 GLDWLSNTL 177 (182)
Q Consensus 169 l~~~l~~~~ 177 (182)
+|+.|.+.+
T Consensus 157 ~f~~i~~~i 165 (166)
T d1z0fa1 157 AFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=187.25 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=127.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEE-E--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ-Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~-~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+++|++|+|||||++++..+.+.. +.||.+....... . ....+.+||++|++++..++..+++.+|++++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 80 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 80 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence 357899999999999999999999998766 6778775443322 2 34689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHH---------Hhccccc-cCCccEEEEecc
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTE---------ALELHKI-KNRQWAIFKTSA 160 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~S~ 160 (182)
|||+++++||+.+..|+....... ..+.|+++|+||+|+.+.....+... ...+..+ ...+.+|++|||
T Consensus 81 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 159 (191)
T d2ngra_ 81 CFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159 (191)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred ccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence 999999999999998888776654 36799999999999864311111000 0000011 223467999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|.||+++|+.+...+.+.
T Consensus 160 k~~~~V~e~f~~l~~~~~~~ 179 (191)
T d2ngra_ 160 LTQKGLKNVFDEAILAALEP 179 (191)
T ss_dssp TTCTTHHHHHHHHHHHHTSC
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999876543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=187.12 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=126.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE-EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+|+|++|||||||++++..+.+.. +.||.+.... .+.. ....+.+||++|++.+..++..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 578999999999999999999999998766 6777773332 2333 45778999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---------ccc-cCCccEEEEecc
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL---------HKI-KNRQWAIFKTSA 160 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~S~ 160 (182)
|+|++++++|+.+..++....+.. ..+.|+++|+||+|+.++....+....... ..+ ....++|++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999988777766654 357899999999998643111111011000 000 123468999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030149 161 IKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~ 178 (182)
++|.||+++|+.|.+.+.
T Consensus 162 k~~~~V~e~F~~l~~~il 179 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVL 179 (183)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHc
Confidence 999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=188.91 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEE-E--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ-Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~-~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++..+.+.. +.||.+....... . ....+.+||++|++.+. ....+++.+|++++|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 5799999999999999999999998766 7888886544332 2 33789999999998764 5566788999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCC-hHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG-LFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g-i~~l 169 (182)
|+++++++..+..|+..........+.|+++|+||+|+... ...++..+.. +..+++|++|||++|+| |+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH-----HHhCCeEEEEccccCCcCHHHH
Confidence 99999999999888766655555578999999999998643 2333332222 22356799999999985 9999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|..|.+.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-34 Score=188.18 Aligned_cols=159 Identities=20% Similarity=0.299 Sum_probs=128.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|||||||++++..+++.. +.+|.+.......+ ....+.+||+||++.+..++..+++.+|++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 34899999999999999999999888766 56666655443333 45679999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-HHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-AAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|.++++++..+..|+..+.... ..+.|+++|+||+|+...... .+....+. ...+++|+++||++|+|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA----QENELMFLETSALTGENVEEA 158 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHH----HhCCCEEEEeeCCCCcCHHHH
Confidence 999999999999999999886654 368999999999998543222 22222222 234578999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 159 f~~l~~~i~~ 168 (174)
T d2bmea1 159 FVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-33 Score=188.29 Aligned_cols=158 Identities=24% Similarity=0.352 Sum_probs=128.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+|+|++|||||||++++..+.+.. +.||.+.... .+.+ ....+.+|||||++.+..++..+++++|++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888766 6777775544 3444 45788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|+++++++.....++..+... ...+.|+++|+||+|+.+.... ++..... ...+.+|+++||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 99999999999999888877543 4478999999999999754322 2222221 23456699999999999999
Q ss_pred HHHHHHHHHhh
Q 030149 169 GLDWLSNTLKS 179 (182)
Q Consensus 169 l~~~l~~~~~~ 179 (182)
+|+.|.+.+.+
T Consensus 159 ~f~~l~~~i~~ 169 (194)
T d2bcgy1 159 AFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-34 Score=187.02 Aligned_cols=158 Identities=21% Similarity=0.312 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+|+|++|||||||++++.++++.. +.++.. ........ ....+.+||++|++.+..++..+++.+|++|+|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999888766 444444 33333333 347889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
+|++++++++....|+..+.+. ...+.|+++|+||+|+... ...++.. .+. +..+++|+++||++|.||+++
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~-~~a----~~~~~~~~e~Sa~tg~~V~e~ 156 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGE-AFA----REHGLIFMETSAKTACNVEEA 156 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEEECTTTCTTHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHH-HHH----HHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999888654 3468999999999998542 2222222 222 234568999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|..+.+.+.++
T Consensus 157 f~~i~~~i~~~ 167 (173)
T d2a5ja1 157 FINTAKEIYRK 167 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-33 Score=182.97 Aligned_cols=159 Identities=20% Similarity=0.322 Sum_probs=125.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+||+++|++|||||||++++.++.+.. +.++.+ .....+..++ ..+.+||++|++.+...+..+++.+|++|+
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 35799999999999999999999988766 555554 3344445544 688999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC-HHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD-DAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|+|.++++++.....|+..+.... .++.|+++|+||+|+.+... ..+...... ...+.++++|||++|+|++++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhh----cccCceEEEEecCCCcCHHHH
Confidence 999999999999999998886554 36789999999999974321 122222221 234567999999999999999
Q ss_pred HHHHHHHHhh
Q 030149 170 LDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~~~~ 179 (182)
|+.+.+.+.+
T Consensus 158 f~~l~~~i~~ 167 (175)
T d2f9la1 158 FKNILTEIYR 167 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-32 Score=181.81 Aligned_cols=161 Identities=21% Similarity=0.329 Sum_probs=131.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. +.++.+.. ...+.+ ....+.+|||||++++..++..++..+|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999988766 55555443 334444 34679999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|++++.++.....|+..+.........|+++++||.|.............+. +..+++|+++||++|+|++++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~tg~gv~e~f 161 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA----RKHSMLFIEASAKTCDGVQCAF 161 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH----HHCCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999987776677899999999999865433222222222 2345679999999999999999
Q ss_pred HHHHHHHhhc
Q 030149 171 DWLSNTLKSI 180 (182)
Q Consensus 171 ~~l~~~~~~~ 180 (182)
+++++.+.+.
T Consensus 162 ~~l~~~l~~~ 171 (177)
T d1x3sa1 162 EELVEKIIQT 171 (177)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHccC
Confidence 9999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-33 Score=181.91 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=115.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE-----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
-+||+++|++|||||||++++.++++.. +.||.+........ ....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999888766 56666644333333 33678999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCCCC--CHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPGAL--DDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|+|.+++.++.....|+.++.... ...+.|+++|+||+|+.+.. ...+..+.+.. .....+|++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~e~SA~~g~g 158 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAIN 158 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH---HcCCCeEEEEeCCCCcC
Confidence 999999999999999888776542 23468999999999986431 11222222222 22346699999999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 030149 166 LFEGLDWLSNTLKSIG 181 (182)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (182)
|+++|++|.+.+.++.
T Consensus 159 v~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 159 VDTAFEEIARSALQQN 174 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.2e-32 Score=182.61 Aligned_cols=160 Identities=16% Similarity=0.244 Sum_probs=129.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEEEEE----cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+|+|.+|||||||++++.++++.. +.||.+.+.....+ ....+.+||++|+......+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 689999999999999999999988766 77788866655544 4578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHH
Q 030149 93 DSSDTERLVIAKDEFHAILEEE---ELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l 169 (182)
|.+++.++..+..|+..+.... ...+.|+++|+||+|+.+.....+....+. ....++++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 9999999999998887776542 234679999999999865433333322222 1234677999999999999999
Q ss_pred HHHHHHHHhhc
Q 030149 170 LDWLSNTLKSI 180 (182)
Q Consensus 170 ~~~l~~~~~~~ 180 (182)
|++|.+.+.+.
T Consensus 160 f~~l~~~i~~~ 170 (184)
T d1vg8a_ 160 FQTIARNALKQ 170 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99998877653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-34 Score=187.06 Aligned_cols=159 Identities=23% Similarity=0.329 Sum_probs=100.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-ccccccee--EEEEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIY 90 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..+ ...+.+|||||++.+..++..+++.+|++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 45799999999999999999999888655 55666544 3445554 4678889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH--HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 91 VVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD--AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
|+|++++.++..+..++..+.. ....+.|+++|+||+|+...... ++.... ....+++|++|||++|+||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~g~gv~e 158 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVEN 158 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHHH
T ss_pred EEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHH-----HHhcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998888754 34467999999999998754322 222221 133467899999999999999
Q ss_pred HHHHHHHHHhhc
Q 030149 169 GLDWLSNTLKSI 180 (182)
Q Consensus 169 l~~~l~~~~~~~ 180 (182)
+|++|.+.+.++
T Consensus 159 ~f~~l~~~i~~k 170 (173)
T d2fu5c1 159 AFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-33 Score=183.54 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=119.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccceeEEE--EEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+||+++|++++|||||++++..+.+.. +.++.+.+... +...+ ..+.+|||||++.+..++..+++++|+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence 45799999999999999999999888654 44555555444 33333 67899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEEEEecccCCCChH
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAIFKTSAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (182)
+|+|.++++++.....++....... ....|+++|+||+|+..... .++..... +..+++|+++||++|.||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNVD 158 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999998876654 35789999999999875422 23332222 2234679999999999999
Q ss_pred HHHHHHHHHHhh
Q 030149 168 EGLDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~l~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 159 e~f~~l~~~i~k 170 (170)
T d2g6ba1 159 LAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 999999988753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-33 Score=181.40 Aligned_cols=159 Identities=27% Similarity=0.382 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEE--EEEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-+||+++|++|+|||||+++++.+++.. +.||.+.... .+... ...+.+|||||++.+..++..+++++|++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999988766 6777765444 34433 46788899999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHH
Q 030149 92 VDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
+|.+++++++....++...... .....|++++++|.|+.......+....+.. ..++++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHH
Confidence 9999999999988887776554 3467899999999998765444444333332 2356799999999999999999
Q ss_pred HHHHHHhhc
Q 030149 172 WLSNTLKSI 180 (182)
Q Consensus 172 ~l~~~~~~~ 180 (182)
+|.+.+.++
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-34 Score=190.41 Aligned_cols=160 Identities=22% Similarity=0.401 Sum_probs=127.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE------------cCeEEEEEEcCCCCCCcchhhh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY------------NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+||+++|++|+|||||++++.++.+.. +.++.+... ..+.+ ....+.+|||+|++++..++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 34899999999999999999999988766 555554332 22322 1357999999999999999999
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEe
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++|+|+|++++.+++.+..|+..+.........|+++|+||+|+.+. ...++..+.. +..++++++|
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH-----HHcCCEEEEE
Confidence 99999999999999999999999999888776666677899999999999643 2233332222 2345679999
Q ss_pred cccCCCChHHHHHHHHHHHhhc
Q 030149 159 SAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
||++|+||+++|+.|.+.+.++
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=7.7e-31 Score=171.29 Aligned_cols=166 Identities=65% Similarity=1.092 Sum_probs=150.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.+||+++|.+|||||||++++.++++....+|.+........+...+.+||.+|...........+...+++++++|+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 82 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhh
Confidence 46789999999999999999999999998888899888888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCChHHHHHHHH
Q 030149 95 SDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~ 174 (182)
.+..++.....++............|+++++||.|+.......++.............++|+++||++|+||+++|++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~ 162 (169)
T d1upta_ 83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162 (169)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999888888888877777777899999999999988877888888877777777889999999999999999999999
Q ss_pred HHHhhc
Q 030149 175 NTLKSI 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.++
T Consensus 163 ~~l~~k 168 (169)
T d1upta_ 163 ETLKSR 168 (169)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 988765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-32 Score=179.27 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE-EEEEE--cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++..+.+.. +.||.+... ..+.. ....+.+||++|++.+...+..+++.+|++++|+
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4789999999999999999999998876 677766332 22332 4478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC--------------CHHHHHHHhccccccCCccEEEEe
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL--------------DDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+++++||+....++........ .+.|+++|+||+|+.... ..++...... .....+|++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~~~y~E~ 156 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATYIEC 156 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEEEEC
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH----HhCCCeEEEE
Confidence 99999999999988888766544 589999999999985421 1112211111 1123579999
Q ss_pred cccCCC-ChHHHHHHHHHHHhhc
Q 030149 159 SAIKGE-GLFEGLDWLSNTLKSI 180 (182)
Q Consensus 159 S~~~~~-gi~~l~~~l~~~~~~~ 180 (182)
||++|+ |++++|+.+...+.++
T Consensus 157 SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 157 SALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCCcCHHHHHHHHHHHHhcC
Confidence 999998 5999999999887653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-32 Score=176.97 Aligned_cols=160 Identities=16% Similarity=0.281 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeEEE--EEEc--CeEEEEEEcCCCCCCcchhhhccCCCCeEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTQAII 89 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..-+||+|+|++|||||||++++..+++.. +.+|.+..... .... ...+.+||++|.......+..++..+++++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 83 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence 345799999999999999999999988776 66666654333 2333 467899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhh---cccCCCeEEEEeecCCCCCC-CCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEE---EELRGAVVLIFANKQDLPGA-LDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
+++|.+++.+++....|+..+... ....+.|+++|+||+|+.+. ...++..+... +...++|++|||++|.|
T Consensus 84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~g 159 (174)
T d1wmsa_ 84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATN 159 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTT
T ss_pred EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcC
Confidence 999999999999999888776554 33346899999999999653 23333333222 12345799999999999
Q ss_pred hHHHHHHHHHHHh
Q 030149 166 LFEGLDWLSNTLK 178 (182)
Q Consensus 166 i~~l~~~l~~~~~ 178 (182)
|+++|+.|++.+.
T Consensus 160 I~e~f~~l~~~il 172 (174)
T d1wmsa_ 160 VAAAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-33 Score=181.48 Aligned_cols=161 Identities=13% Similarity=0.085 Sum_probs=121.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccce--eEEEEEEc--CeEEEEEEcCCCCCC-cchhhhccCCCCeE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGF--NVETVQYN--NIKFQVWDLGGQTSI-RPYWRCYFPNTQAI 88 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~~-~~~~~~~~~~~d~i 88 (182)
.-+||+++|++|+|||||++++.+..+.. ..+|.+. ....+..+ ...+.+||+++.... +.++..+++.+|++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ 81 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence 34799999999999999999998776543 4445543 33344443 456788998764322 22566788999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 89 IYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
|+|+|+++++++..+..|+..+......++.|+++|+||+|+... ...++. +.+ ....+++|+++||++|.||
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHNV 156 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSH
T ss_pred eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHH----HHHcCCeEEEEeCCCCcCH
Confidence 999999999999999999998877766778999999999998643 222332 222 2334578999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 030149 167 FEGLDWLSNTLKSIG 181 (182)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (182)
+++|+.|++.+..++
T Consensus 157 ~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 157 KELFEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999987654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=175.02 Aligned_cols=157 Identities=14% Similarity=0.165 Sum_probs=120.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEE-EEEEcC--eEEEEEEcCCCCCCcchhhhccCCCCeEEEE
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYV 91 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.+||+++|++|+|||||++++.++.+....+|.+.... .+..++ ..+.+|||+|+..+ .+++.+|++|+|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV 77 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV 77 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence 4579999999999999999999999998777666654433 344444 77899999998754 367789999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCC----HHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 92 VDSSDTERLVIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALD----DAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
||+++++||+.+..|...+... ....+.|+++|+||.|+..... .++..... ....+++|++|||++|.|
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~----~~~~~~~~~e~SAk~~~~ 153 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC----ADMKRCSYYETCATYGLN 153 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHH----HTSTTEEEEEEBTTTTBT
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHH----HHhCCCeEEEeCCCCCcC
Confidence 9999999999998888776543 3345679999999999854322 22222211 133467899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
++++|..+++.+.+.
T Consensus 154 v~~~F~~l~~~i~~~ 168 (175)
T d2bmja1 154 VDRVFQEVAQKVVTL 168 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.9e-32 Score=177.79 Aligned_cols=153 Identities=25% Similarity=0.375 Sum_probs=120.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCCcc-hhhhccCCCCeEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRP-YWRCYFPNTQAII 89 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 89 (182)
+.+||+++|++|||||||++++..+++.. +.++.+... ..... ....+.+||++|...... .+..+++++|++|
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 35799999999999999999999888766 555555333 33333 567899999999876654 4677899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC--CCHHHHHHHhccccccCCccEEEEecccC---CC
Q 030149 90 YVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA--LDDAAVTEALELHKIKNRQWAIFKTSAIK---GE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~ 164 (182)
+|+|++++++++.+..|+..+.+.....+.|+++|+||+|+.++ ...++..+ +. +..+++|++|||++ +.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FA----DTHSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEEECCSSSGGGGS
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-HH----HHCCCEEEEEecccCCcCc
Confidence 99999999999999999999888777778999999999998654 23333322 22 23356799999987 55
Q ss_pred ChHHHHHHH
Q 030149 165 GLFEGLDWL 173 (182)
Q Consensus 165 gi~~l~~~l 173 (182)
||+++|++|
T Consensus 156 ~V~e~F~~l 164 (165)
T d1z06a1 156 HVEAIFMTL 164 (165)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 999999886
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-29 Score=164.93 Aligned_cols=157 Identities=37% Similarity=0.639 Sum_probs=139.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcc
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTE 98 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|+|||||++++.++++..+.||.+.......+.+....+||++|...+...+..+...++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 79999999999999999999999988999999999888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccc-------cCCccEEEEecccCCCChHHHHH
Q 030149 99 RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKI-------KNRQWAIFKTSAIKGEGLFEGLD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~gi~~l~~ 171 (182)
++.....++..........+.|+++++||.|+.......++.+.+..... ....+.+++|||++|+|++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 99988888888877777788999999999999877777777666543222 23466799999999999999999
Q ss_pred HHHH
Q 030149 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
+|.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.97 E-value=3.9e-29 Score=165.50 Aligned_cols=165 Identities=32% Similarity=0.617 Sum_probs=134.2
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEE
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.++..||+++|++|||||||++++.++.+....|+.+.+...+.+.+..+.+||+++.......+..+.+..+.+++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 88 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence 45888999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc------------ccCCccEEEEecc
Q 030149 93 DSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK------------IKNRQWAIFKTSA 160 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S~ 160 (182)
|..+...+......+..........+.|+++++||.|+.......++.+...... ....++++++|||
T Consensus 89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (186)
T d1f6ba_ 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence 9999999888888777777777778899999999999987777777666554321 1223567999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 030149 161 IKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~ 177 (182)
++|+|++|+|++|.+++
T Consensus 169 ~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 169 LKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.6e-28 Score=163.34 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=131.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
|.+||+++|..|||||||++++..+.+ .+.||+|.....+......+.+||++|++.+...+..+++.++++++++|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 568999999999999999999988877 4779999999999999999999999999999999999999999999999987
Q ss_pred Ccc----------hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC------------------CCHHHHHH-----H
Q 030149 96 DTE----------RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA------------------LDDAAVTE-----A 142 (182)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------------~~~~~~~~-----~ 142 (182)
+.+ .+.+....|..++......+.|+++++||.|+.+. .+...... .
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 754 34555677777777777789999999999997321 11111111 1
Q ss_pred hccccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 143 LELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
..........+.++++||++|+||+++|+.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 11122233566789999999999999999999888653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=3.8e-27 Score=155.09 Aligned_cols=156 Identities=16% Similarity=0.062 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccc----cccceeEEEEEEcCeEEEEEEcCCCCCCcchh--------hhccC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI----PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFP 83 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 83 (182)
+.-.|+|+|++|+|||||+|+|++.+..... .|...........+..+.+|||||........ ..+++
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence 4457999999999999999999987654322 24445555666788999999999976543322 34578
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCC
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (182)
.+|++|+|+|++++... ...++...++.. ..+.|+++|+||+|+... .++..+.... ......++++||++|
T Consensus 84 ~ad~il~v~D~~~~~~~--~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~---~~~~~~~~~iSA~~~ 155 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHE---LLPEAEPRMLSALDE 155 (178)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHH---TSTTSEEEECCTTCH
T ss_pred cccceeeeechhhhhcc--cccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHh---hcccCceEEEecCCC
Confidence 89999999999876443 334454554432 246899999999999653 2333333322 123345899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 030149 164 EGLFEGLDWLSNTLKS 179 (182)
Q Consensus 164 ~gi~~l~~~l~~~~~~ 179 (182)
.|+++|++.|.+.+++
T Consensus 156 ~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 156 RQVAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999987754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=2e-27 Score=158.39 Aligned_cols=161 Identities=22% Similarity=0.356 Sum_probs=125.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|+.|||||||++++....+ ||.+.....+......+.+||++|++.+...+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 568999999999999999999975543 5677777888889999999999999999999999999999999999998
Q ss_pred CcchH----------HHHHHHHHHHHhhcccCCCeEEEEeecCCCCC-----------------CCCHHHHHH----Hhc
Q 030149 96 DTERL----------VIAKDEFHAILEEEELRGAVVLIFANKQDLPG-----------------ALDDAAVTE----ALE 144 (182)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~-----------------~~~~~~~~~----~~~ 144 (182)
+.+++ .+...++..++........|+++++||+|+.. +....+... .+.
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 87654 34556677777777778899999999998621 111111111 111
Q ss_pred c--ccccCCccEEEEecccCCCChHHHHHHHHHHHhhc
Q 030149 145 L--HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 145 ~--~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
. .......+.+++|||++|+||+++|+.+.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 1 11223466788999999999999999999887653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.95 E-value=4.1e-28 Score=159.78 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=113.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc----------ccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccC
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----------TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
..|.++|+++|++++|||||+|+|.+.......+ +.......+...+..+.++|+||+.++.......+.
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence 4678999999999999999999998644322111 122333344558899999999999988888888899
Q ss_pred CCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHH---HHhccccccCCccEEEEecc
Q 030149 84 NTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVT---EALELHKIKNRQWAIFKTSA 160 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~S~ 160 (182)
.+|++++++|+.+..... ....+... ...+.|+++|+||+|+......+... +............+++++||
T Consensus 82 ~~d~~ilv~d~~~g~~~~-~~~~~~~~----~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPKTQ-TGEHMLIL----DHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp SCCEEEEEEETTTCSCHH-HHHHHHHH----HHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hccccccccccccccchh-hhhhhhhh----hhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 999999999998764322 12222222 22478999999999997653222221 22211222334567999999
Q ss_pred cCCCChHHHHHHHHHHHhhc
Q 030149 161 IKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 161 ~~~~gi~~l~~~l~~~~~~~ 180 (182)
++|+|+++|++.|.+.+++.
T Consensus 157 ~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 157 KTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TTCTTHHHHHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHhcCCcc
Confidence 99999999999999988764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.1e-26 Score=155.53 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=120.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+-+||+++|++|||||||++++. -...+.||.|.....+.+....+.+||++|++.++..+..+++.++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 35899999999999999999993 2233788999999999999999999999999999999999999999999999998
Q ss_pred Ccc----------hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC------------------CCHHHHHHHhcccc
Q 030149 96 DTE----------RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA------------------LDDAAVTEALELHK 147 (182)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------------------~~~~~~~~~~~~~~ 147 (182)
+.. ++.....++..+++.....+.|+++++||+|+.+. .+.+...+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 743 45666777888888777789999999999997321 11122222211111
Q ss_pred ------ccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 148 ------IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 148 ------~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.....+.++++||++++||+++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 11234557789999999999999999887654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.6e-27 Score=150.97 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc--ccc--ccceeEEEEEEcCeEEEEEEcCCCCCCcch--------hhhccCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|||||||+|+|++.+... ..+ +.......+...+..+.++|+||..+.... ...++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 689999999999999999999876543 222 333555667778999999999996544321 23446789
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|++++++|..+..++.....+...+ ... ..+.|+++|+||+|+..+.. ...+....+++++||++|.|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~-~~~-~~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFI-ARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGEG 149 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHH-HHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCTT
T ss_pred cccceeeccccccchhhhhhhhhhh-hhc-ccccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCCC
Confidence 9999999999887766655443333 332 24789999999999854321 12234567899999999999
Q ss_pred hHHHHHHHHHHH
Q 030149 166 LFEGLDWLSNTL 177 (182)
Q Consensus 166 i~~l~~~l~~~~ 177 (182)
+++|+++|.+.|
T Consensus 150 i~~L~~~l~~~l 161 (161)
T d2gj8a1 150 VDVLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999998864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.5e-26 Score=151.36 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCCCCC-------cchhhhccCCCCe
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-------RPYWRCYFPNTQA 87 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 87 (182)
+|+++|.+|||||||+|+|++..... ...|...+...... .+..+.+|||||.... .......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 59999999999999999998766433 22233333333333 5678999999994321 2223355788999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHh-hcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCCh
Q 030149 88 IIYVVDSSDTERLVIAKDEFHAILE-EEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGL 166 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (182)
+++++|..... ......+...+.. .....++|+++|+||+|+..+...++..+.+. ..+.+++++||++|+|+
T Consensus 83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~gi 156 (180)
T d1udxa2 83 LLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGL 156 (180)
T ss_dssp EEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTTH
T ss_pred hhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCCH
Confidence 99999986542 2222222222111 11223589999999999975433333333332 34667999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030149 167 FEGLDWLSNTLKSI 180 (182)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (182)
++|++.|.+.+...
T Consensus 157 d~L~~~i~~~l~~~ 170 (180)
T d1udxa2 157 PALKEALHALVRST 170 (180)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.6e-26 Score=152.02 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=110.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc---c-ccccceeEEEEEEcCeEEEEEEcCCCCCC------------cch
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSI------------RPY 77 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~---~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~ 77 (182)
..+.+||+++|++|+|||||+|++++.+... . ..+.......+...+..+.++|+||.... ...
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 3567999999999999999999999876533 2 22333444556678899999999995432 223
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC--HHHHHHHhccccccCCccEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD--DAAVTEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (182)
....++.+|++++|+|+..+..- ....+...... .+.|+++|+||+|+..... .+++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~--~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITR--QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccchh--hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 34456789999999999766432 22223333222 4789999999999864432 24444444333333345579
Q ss_pred EEecccCCCChHHHHHHHHHHHhhc
Q 030149 156 FKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 156 ~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
+++||++|.|+++|++.|.+.+...
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998887654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=7.9e-27 Score=154.27 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCc---------------chhhhccC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------------PYWRCYFP 83 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------------~~~~~~~~ 83 (182)
.|+++|.+|+|||||+|++.+.+... .++.+.+.....+....+.++||||..... .......+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~-~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 80 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS-SSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence 68999999999999999999876532 222222222222333456789999953221 11234467
Q ss_pred CCCeEEEEEeCCCcchHHHHHH------HHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcc---ccccCCccE
Q 030149 84 NTQAIIYVVDSSDTERLVIAKD------EFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALEL---HKIKNRQWA 154 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~------~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~ 154 (182)
.+|++++|+|+..+........ .-..+.+.....+.|+++|+||+|+.++ .+........ .........
T Consensus 81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
T d2cxxa1 81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN--VQEVINFLAEKFEVPLSEIDKV 158 (184)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC--HHHHHHHHHHHHTCCGGGHHHH
T ss_pred ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhh--HHHHHHHHHHHhcccccccCCe
Confidence 7999999999865432211110 0011222223357999999999998754 2222222211 112223445
Q ss_pred EEEecccCCCChHHHHHHHHHHHhhc
Q 030149 155 IFKTSAIKGEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 155 ~~~~S~~~~~gi~~l~~~l~~~~~~~ 180 (182)
++++||++|+|+++|++.|.+.++++
T Consensus 159 ~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 159 FIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHccCC
Confidence 89999999999999999999998864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.1e-25 Score=145.49 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc----cccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhccCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI----PTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 84 (182)
+||+++|.+|+|||||+|+|++.+..... .+.......+...+..+.+|||||.... .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 58999999999999999999887644322 2333555566778999999999994221 1122334677
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCC
Q 030149 85 TQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (182)
+|++++|+|++++....... .... ....++++++||+|+.+....+++...+.. ..+++++||++|+
T Consensus 81 ad~ii~v~d~~~~~~~~~~~-~~~~------~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRK-ILER------IKNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHH-HHHH------HTTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhh-hhhh------cccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence 99999999999887644322 1111 136789999999999988777777665542 3459999999999
Q ss_pred ChHHHHHHHHH
Q 030149 165 GLFEGLDWLSN 175 (182)
Q Consensus 165 gi~~l~~~l~~ 175 (182)
|+++|++.|.+
T Consensus 148 gi~~L~~~I~k 158 (160)
T d1xzpa2 148 GLEKLEESIYR 158 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999998865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=2.8e-25 Score=145.13 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcc----cccccceeEEEEEEcCeEEEEEEcCCCCCC---------cchhhhccCCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPNT 85 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 85 (182)
.|+++|++|||||||+++|++..... ...|.......+......+.++|++|.... .......+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 68999999999999999999876543 222444556667778999999999994322 11233446889
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccCCCC
Q 030149 86 QAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (182)
|+++++.|.+....... ..+...+.. .++|+++|+||+|+.++.. .+....+ .+....+++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~-~~~~~~~----~~~~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFE-REVKPEL----YSLGFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHH-HHTHHHH----GGGSSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhh-hHHHHHH----HhcCCCCeEEEecCCCCC
Confidence 99999999876654322 222222222 3689999999999863211 1111121 122233479999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 030149 166 LFEGLDWLSNTLKSI 180 (182)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (182)
+++++++|.+.+++.
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1e-25 Score=150.26 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=101.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc-cccccc--eeEEEEEEcCeEEEEEEcCCCCCCc-------------chh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIR-------------PYW 78 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~-------------~~~ 78 (182)
....+|+++|++|||||||+|+|.+.+... ..+..+ ...... .....+.+.|+++..... ...
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc-cccccceEEEEEeeccccccccccchhhhHHhhh
Confidence 444599999999999999999999865322 222222 111111 234556678887732211 122
Q ss_pred hhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEe
Q 030149 79 RCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
......+|++++++|+..+.. .....+...+. ..++|+++|+||+|+..+...++..+.+.+........+++++
T Consensus 100 ~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~---~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (195)
T d1svia_ 100 ITTREELKAVVQIVDLRHAPS--NDDVQMYEFLK---YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHH---HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred hccccchhhhhhhhhcccccc--ccccccccccc---cccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 234567899999999976532 22222222222 2478999999999987665555555555444445567789999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q 030149 159 SAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 159 S~~~~~gi~~l~~~l~~~~~ 178 (182)
||++|+|+++++++|.+.+.
T Consensus 175 SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999998874
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=7.6e-25 Score=148.51 Aligned_cols=161 Identities=27% Similarity=0.357 Sum_probs=125.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+..||+++|+.|||||||++++..+. ..||.|.....+.+++..+.+||++|++.++..|..+++.++++++++|.+
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s 81 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence 56899999999999999999996443 458999999999999999999999999999999999999999999999987
Q ss_pred Cc----------chHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC------CCHH----------------------
Q 030149 96 DT----------ERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA------LDDA---------------------- 137 (182)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~------~~~~---------------------- 137 (182)
+. .++.+....+..+++.....+.|+++++||+|+.+. ....
T Consensus 82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~ 161 (221)
T d1azta2 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED 161 (221)
T ss_dssp GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCC
T ss_pred ccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCc
Confidence 53 345666777888888877789999999999998421 1100
Q ss_pred ----HHHH----Hhc----cccccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 138 ----AVTE----ALE----LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 138 ----~~~~----~~~----~~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.... .+. ........+...++||.++.+|+.+|+.+.+.+.+
T Consensus 162 ~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 1111 110 11111234556789999999999999888776653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=5e-24 Score=143.23 Aligned_cols=157 Identities=24% Similarity=0.329 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE---cCeEEEEEEcCCCCCCc-chhhhccCCCCeEEEEEeC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR-PYWRCYFPNTQAIIYVVDS 94 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|++|||||||++++.++.+....||.+.+...+.+ .+..+.+||++|++.++ ..+..++..++.+++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 7999999999999999999999888877888877777766 46789999999998775 4667778899999999999
Q ss_pred CCcchH-HHHHHHHHHHHhh--cccCCCeEEEEeecCCCCCCCCHHHHHHHhccc-------------------------
Q 030149 95 SDTERL-VIAKDEFHAILEE--EELRGAVVLIFANKQDLPGALDDAAVTEALELH------------------------- 146 (182)
Q Consensus 95 ~~~~s~-~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~------------------------- 146 (182)
++..++ .....++..++.. ......|+++++||+|+......+++.+.+...
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 887653 4444555555432 223468999999999998766665554432110
Q ss_pred ---------cccCCccEEEEecccCCCC------hHHHHHHHHH
Q 030149 147 ---------KIKNRQWAIFKTSAIKGEG------LFEGLDWLSN 175 (182)
Q Consensus 147 ---------~~~~~~~~~~~~S~~~~~g------i~~l~~~l~~ 175 (182)
........++++|+++|.| ++++-+||.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 0011345799999999987 7777666654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.92 E-value=2.4e-25 Score=151.57 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccc---cccceeEE------------------EEEEcCeEEEEEEcCCCCCCcc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI---PTIGFNVE------------------TVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~---~t~~~~~~------------------~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..|+|+|++++|||||+++|++....... .+...... .+...+..+.++||||+..+..
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~ 85 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence 34999999999999999999764322210 01111111 1223567899999999999988
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHH---H---------------
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDA---A--------------- 138 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~---~--------------- 138 (182)
.....+..+|++|+|+|+.+.-.-. ....+.. ....+.|+|+++||+|+....... .
T Consensus 86 ~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~----~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (227)
T d1g7sa4 86 LRKRGGALADLAILIVDINEGFKPQ-TQEALNI----LRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK 160 (227)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHH----HHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred cchhcccccceEEEEEecccCcccc-hhHHHHH----hhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence 8888899999999999997653221 1122222 223578999999999986532110 0
Q ss_pred HHHH-------hcccc----------ccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 139 VTEA-------LELHK----------IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 139 ~~~~-------~~~~~----------~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
.... +.... ......+++++||++|.|+++|++.|....++
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0000 00000 01124579999999999999999999887754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.91 E-value=7.3e-25 Score=145.99 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=106.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc--c----ccccce--eEEEE---------------------EEcCeEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--T----IPTIGF--NVETV---------------------QYNNIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~----~~t~~~--~~~~~---------------------~~~~~~~~ 64 (182)
++..+||+++|+.++|||||+++|.+..... . .-|... ..... ......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 3567899999999999999999998643211 1 111111 11111 11235689
Q ss_pred EEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhc
Q 030149 65 VWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALE 144 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~ 144 (182)
++||||+..|.......+..+|++++++|+.+..........+... ... ...++++++||+|+.+.....+......
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~-~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHH-HHh--cCccceeeeecccchhhHHHHHHHHHHH
Confidence 9999999999888888889999999999998763222223332222 221 2356889999999975422222221111
Q ss_pred c--ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 145 L--HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 145 ~--~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
. .......++++++||++|+|+++|++.+.+.++
T Consensus 159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1 112234578999999999999999999988764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=8.4e-25 Score=144.58 Aligned_cols=157 Identities=26% Similarity=0.254 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEE-cCeEEEEEEcCCC----CCCcc---hhhhccCCCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQ----TSIRP---YWRCYFPNTQ 86 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~----~~~~~---~~~~~~~~~d 86 (182)
.+|+++|.+|+|||||+|+|.+.+... ...|.........+ .+..+.+|||||. ..... .....+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 369999999999999999998766432 23345555555555 4568999999994 12112 1223356689
Q ss_pred eEEEEEeCCCcchHHHHHHH--HH--HHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 87 AIIYVVDSSDTERLVIAKDE--FH--AILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~--~~--~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
.++++++....+........ .. .........++|+++|+||+|+.+. .+..+.+... ...+.+++++||++
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~---~~~~~~~~~~--~~~~~~v~~iSA~~ 156 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEK--LTDDYPVFPISAVT 156 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHH--CCSCCCBCCCSSCC
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH---HHHHHHHHHH--hccCCcEEEEECCC
Confidence 99999987655432222211 11 1111233346899999999999753 2222222211 22356799999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|.|+++|++.+.+.+.+
T Consensus 157 g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 157 REGLRELLFEVANQLEN 173 (185)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999999865
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=2.8e-23 Score=139.23 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=105.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccc--cceeEEEE--------------------------EEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPT--IGFNVETV--------------------------QYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t--~~~~~~~~--------------------------~~~~ 60 (182)
++.+||+++|+.++|||||+++|++..... ...+ .+...... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 566899999999999999999998632211 0000 01111111 0112
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHH
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVT 140 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~ 140 (182)
..+.++|+||+.+|.......+..+|++|+|+|+.+.-.....+..+... ... .-.|+|+++||+|+..........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~~--~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GII--GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HHc--CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999888888899999999999997752212222222222 221 235889999999997543222221
Q ss_pred HHhcc--ccccCCccEEEEecccCCCChHHHHHHHHHHHh
Q 030149 141 EALEL--HKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLK 178 (182)
Q Consensus 141 ~~~~~--~~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~ 178 (182)
..... .......++++++||++|.|+++|++.+.+.++
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 11111 122334678999999999999999999887764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.90 E-value=8.8e-24 Score=140.06 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=109.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-------CC----------cc--cccccceeEEEEEEcCeEEEEEEcCCCCCCcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG-------EV----------VS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~-------~~----------~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
+.+||+++|+.++|||||+++|++. .. .+ ..-|+......+.+.+..+.++||||+.+|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4689999999999999999999641 00 00 11133344455666889999999999999988
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCH-H----HHHHHhccccccCC
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDD-A----AVTEALELHKIKNR 151 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
.....+..+|++++|+|+.+... ......+...... ...|+|+++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888999999999999977532 2222223332221 24689999999998753221 1 22222222233345
Q ss_pred ccEEEEecccCC----------CChHHHHHHHHHHHh
Q 030149 152 QWAIFKTSAIKG----------EGLFEGLDWLSNTLK 178 (182)
Q Consensus 152 ~~~~~~~S~~~~----------~gi~~l~~~l~~~~~ 178 (182)
..+++++|+++| +++.+|++.+.+.++
T Consensus 158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 678999999998 588888888876653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=4.9e-23 Score=137.56 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=98.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC--------CCcc------------cccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
+.+||+++|++++|||||+++|+.. .... +.-|+......+.+.+..+.++||||+.+|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 4689999999999999999999621 0000 1225666677788899999999999999999
Q ss_pred chhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCCCCC-HH----HHHHHhcccccc
Q 030149 76 PYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPGALD-DA----AVTEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 149 (182)
......+..+|++|+|+|+.+...... ...+..... .+.| +++++||+|+.+... .+ ++...+....+.
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 999889999999999999977644322 222333222 3555 788899999865321 12 222233333333
Q ss_pred CCccEEEEecccC
Q 030149 150 NRQWAIFKTSAIK 162 (182)
Q Consensus 150 ~~~~~~~~~S~~~ 162 (182)
....++++.|+..
T Consensus 157 ~~~i~~i~~sa~~ 169 (204)
T d2c78a3 157 GDEVPVIRGSALL 169 (204)
T ss_dssp TTTSCEEECCHHH
T ss_pred cccceeeeeechh
Confidence 4556789999864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.87 E-value=1.6e-21 Score=131.42 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=101.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCc--c----------------------------------cccccceeEEEEE
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--S----------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~--~----------------------------------~~~t~~~~~~~~~ 57 (182)
+...+||+++|+.++|||||+++|+..... . ...|.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 456789999999999999999999521100 0 0112233344455
Q ss_pred EcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCC-CeEEEEeecCCCCCCCCH
Q 030149 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRG-AVVLIFANKQDLPGALDD 136 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl~~~~~~ 136 (182)
..+..+.++|+||+..|..........+|++++|+|+.+...- .......+... .+ ..+|+++||+|+.+....
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~--Qt~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT--QTRRHSYIASL---LGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH--HHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc--chHHHHHHHHH---cCCCEEEEEEEccccccccce
Confidence 5788999999999999999998889999999999999765322 22222222222 34 458999999999764322
Q ss_pred --H----HHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 137 --A----AVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 137 --~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+ ++...+....+....++++++||++|.|+.+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 1 2222222333344567899999999998843
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4.3e-21 Score=125.82 Aligned_cols=156 Identities=18% Similarity=0.082 Sum_probs=103.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCccc--cc-cc-ceeEEEEEEcCeEEEEEEcCCCCCCc---------chhhhcc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVST--IP-TI-GFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYF 82 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~--~~-t~-~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 82 (182)
..-.|+++|.+|+|||||+|+|++.+.... .+ |. .........+...+..+|++|..... .......
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 83 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence 345699999999999999999998775432 11 22 23344445577888889999854221 1122234
Q ss_pred CCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEecccC
Q 030149 83 PNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (182)
..+++++++.|..+.... ...++..+. ....|.++++||+|.... ..+..........+....+++++||++
T Consensus 84 ~~~~~~l~~~d~~~~~~~--~~~~~~~l~----~~~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 84 GDVELVIFVVEGTRWTPD--DEMVLNKLR----EGKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAET 155 (179)
T ss_dssp CCEEEEEEEEETTCCCHH--HHHHHHHHH----SSSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred hhcceeEEEEecCccchh--HHHHHHHhh----hccCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence 567888899998654322 222222222 246789999999998754 333333333333344556899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 030149 163 GEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 163 ~~gi~~l~~~l~~~~~~ 179 (182)
|+|+++|++.|.+.+++
T Consensus 156 g~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 156 GLNVDTIAAIVRKHLPE 172 (179)
T ss_dssp TTTHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999888754
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.5e-20 Score=129.72 Aligned_cols=113 Identities=22% Similarity=0.165 Sum_probs=87.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC--CC------------cc-------cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG--EV------------VS-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~--~~------------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
+..||+++|+.|+|||||+++++.. .. .. ..-|+......+.+++.+++++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 4458999999999999999999521 00 00 122566777888999999999999999999
Q ss_pred cchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 75 RPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
.......++-+|..|+|+|+.+.-.. .....|.... ..+.|.++++||+|....
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~-~T~~~w~~a~----~~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEP-QSETVWRQAE----KYKVPRIAFANKMDKTGA 138 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCH-HHHHHHHHHH----TTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhhhheEEeccccCCcch-hHHHHHHHHH----HcCCCEEEEEeccccccc
Confidence 99999999999999999999776332 2233444443 358999999999998653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.84 E-value=2.4e-20 Score=128.44 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--C------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCCCCcc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE--V------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.||+++|+.++|||||+.+++... . . ....|+......+.+++.+++++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 479999999999999999995211 0 0 022266677788889999999999999999999
Q ss_pred hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCC
Q 030149 77 YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLP 131 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 131 (182)
.....++-+|.+|+|+|+.+.-... ....|.... ..+.|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~-t~~~~~~~~----~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVG-TERAWTVAE----RLGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHH----HTTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccch-hHHHHHhhh----hccccccccccccccc
Confidence 9999999999999999998664322 223333332 2579999999999964
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.83 E-value=5.3e-21 Score=130.80 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=90.9
Q ss_pred HhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCC--Cc--------------------------------ccccccceeE
Q 030149 8 LFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE--VV--------------------------------STIPTIGFNV 53 (182)
Q Consensus 8 ~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~--~~--------------------------------~~~~t~~~~~ 53 (182)
.++....++.+||+++|+.++|||||+.+|+... .. ....++....
T Consensus 15 ~~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~ 94 (245)
T d1r5ba3 15 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR 94 (245)
T ss_dssp THHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C
T ss_pred HHHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccc
Confidence 3445556778899999999999999999994211 00 0111223334
Q ss_pred EEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchH-----H-HHHHHHHHHHhhcccCCC-eEEEEee
Q 030149 54 ETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERL-----V-IAKDEFHAILEEEELRGA-VVLIFAN 126 (182)
Q Consensus 54 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~-~iivv~n 126 (182)
..+.+....+.++||||+..|..........+|++++|+|+.+...- . .....+ .+... .+. ++++++|
T Consensus 95 ~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~---~~i~~iiv~iN 170 (245)
T d1r5ba3 95 AYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART---QGINHLVVVIN 170 (245)
T ss_dssp CEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH---TTCSSEEEEEE
T ss_pred cccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH---cCCCeEEEEEE
Confidence 44556778999999999999999999899999999999999764210 0 111111 22222 234 5889999
Q ss_pred cCCCCCCCC-HH---HHHHHhcc----ccc--cCCccEEEEecccCCCChHHHH
Q 030149 127 KQDLPGALD-DA---AVTEALEL----HKI--KNRQWAIFKTSAIKGEGLFEGL 170 (182)
Q Consensus 127 K~Dl~~~~~-~~---~~~~~~~~----~~~--~~~~~~~~~~S~~~~~gi~~l~ 170 (182)
|+|+..... .. ++.+.+.. ... ....++++++||++|+||.+++
T Consensus 171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 999975432 22 22222211 111 1125689999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.1e-20 Score=125.37 Aligned_cols=120 Identities=25% Similarity=0.332 Sum_probs=87.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhc----cCCCCeEEEE
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY----FPNTQAIIYV 91 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~ii~v 91 (182)
...+|+++|++|||||||+|+|.+.++.+.. |.......+...+..+.+||+||++.....+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 4579999999999999999999988765432 2233344455578889999999998766655443 4556889999
Q ss_pred EeCCC-cchHHHHHHHHHHHH---hhcccCCCeEEEEeecCCCCCCCCH
Q 030149 92 VDSSD-TERLVIAKDEFHAIL---EEEELRGAVVLIFANKQDLPGALDD 136 (182)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~~iivv~nK~Dl~~~~~~ 136 (182)
+|+.+ ..+++....++.... ......+.|+++++||+|+......
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~ 129 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 129 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcH
Confidence 99764 556666666654433 3445568999999999999765444
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.4e-20 Score=124.13 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=91.7
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCCccccc---ccceeEE-EEEEcCeEEEEEEcCCC-CCCcc--------
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVE-TVQYNNIKFQVWDLGGQ-TSIRP-------- 76 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~---t~~~~~~-~~~~~~~~~~~~D~~g~-~~~~~-------- 76 (182)
.+++..+.++|+++|.+|+|||||+|++.+.+...... +...... .....+......+.++. .....
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 45566888999999999999999999998877544222 2222222 22224444443333331 11111
Q ss_pred --hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhcccc-ccCCcc
Q 030149 77 --YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHK-IKNRQW 153 (182)
Q Consensus 77 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 153 (182)
.........+.++.+.+....... ....++.... ....++++++||+|+..........+.+.+.. ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhh----hccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 111122344556666666554322 2222333322 24788999999999876544333333332221 223456
Q ss_pred EEEEecccCCCChHHHHHHHHHHH
Q 030149 154 AIFKTSAIKGEGLFEGLDWLSNTL 177 (182)
Q Consensus 154 ~~~~~S~~~~~gi~~l~~~l~~~~ 177 (182)
+++++||++|.|+++|++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999987765
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=5e-20 Score=125.36 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--C-------------------Cc-------------ccccccceeEEEEEEcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG--E-------------------VV-------------STIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~--~-------------------~~-------------~~~~t~~~~~~~~~~~~ 60 (182)
...+||+++|+.++|||||+.+|+.. . .. ...-|+......+.+.+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 45689999999999999999999521 0 00 02336667777888899
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchH------HHHHHHHHHHHhhcccCCC-eEEEEeecCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERL------VIAKDEFHAILEEEELRGA-VVLIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~~~ 133 (182)
.++.++||||+.+|...+......+|++|+|+|+.....- ......+. +... .+. ++|+++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~---~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH---cCCCeEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999753210 01122222 2222 244 58899999998764
Q ss_pred CCH------HHHHHHhccccccCCccEEEEecccCCCChHH
Q 030149 134 LDD------AAVTEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 134 ~~~------~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
... +++...+.........++++++|+..|.|+.+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 322 12222222222333457799999999988643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.82 E-value=2.4e-20 Score=126.27 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=97.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC--c--------------------------------ccccccceeEEEEEEcCe
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEV--V--------------------------------STIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~--~--------------------------------~~~~t~~~~~~~~~~~~~ 61 (182)
+.+||+++|+.++|||||+.+|+...- . ....|.......+++.+.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 468999999999999999999852110 0 011233444556677889
Q ss_pred EEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchH------HHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCC-
Q 030149 62 KFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERL------VIAKDEFHAILEEEELRGAVVLIFANKQDLPGAL- 134 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~- 134 (182)
.+.++||||+.+|.......++-+|+.|+|+|+.+...- ......+ .+.... ...++|+++||+|+..+.
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~~--~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTM--GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHHHh--CCCceEEEEEcccCCCccc
Confidence 999999999999999999999999999999999875211 0111111 111111 235689999999987532
Q ss_pred CHHHH-------HHHhccccccCCccEEEEecccCCCChHH
Q 030149 135 DDAAV-------TEALELHKIKNRQWAIFKTSAIKGEGLFE 168 (182)
Q Consensus 135 ~~~~~-------~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (182)
+...+ ...+..........+++++||..|.|+-+
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 22111 11222223344567899999999998754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1.1e-16 Score=116.55 Aligned_cols=157 Identities=17% Similarity=0.078 Sum_probs=92.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCcc----c---c-cccceeEEEEEE-cCeEEEEEEcCCCCCCcch-----hhh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----T---I-PTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY-----WRC 80 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~----~---~-~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~-----~~~ 80 (182)
...++|+|+|.+|+|||||+|++.+..... . . .|..... ... +...+.+|||||....... ...
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence 456999999999999999999999754322 1 1 1222222 222 4456899999995433221 222
Q ss_pred ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC---------CCCHHHHHHHh----cc--
Q 030149 81 YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG---------ALDDAAVTEAL----EL-- 145 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~---------~~~~~~~~~~~----~~-- 145 (182)
....+|+++++.|..-.+ .....+..+. ..++|+++|.||+|... ....+...+.+ ..
T Consensus 132 ~~~~~d~~l~~~~~~~~~---~d~~l~~~l~----~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l 204 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKK---NDIDIAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 204 (400)
T ss_dssp TGGGCSEEEEEESSCCCH---HHHHHHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhcceEEEEecCCCCCH---HHHHHHHHHH----HcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence 355689888888754321 1222233332 24799999999999521 11122222111 11
Q ss_pred ccccCCccEEEEecccC--CCChHHHHHHHHHHHhhc
Q 030149 146 HKIKNRQWAIFKTSAIK--GEGLFEGLDWLSNTLKSI 180 (182)
Q Consensus 146 ~~~~~~~~~~~~~S~~~--~~gi~~l~~~l~~~~~~~ 180 (182)
........++|.+|..+ ..|+.+|.+.+.+.+++.
T Consensus 205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence 11112334588888765 458999999998887653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.66 E-value=1.1e-15 Score=105.08 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=78.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCCccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCcc-------hhh--hc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------YWR--CY 81 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~--~~ 81 (182)
...++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||..+... ... ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 5779999999999999999999998775442 2244566666777899999999999532211 111 11
Q ss_pred cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcc-cCCCeEEEEeecCCCCCC
Q 030149 82 FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEE-LRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 133 (182)
....|++++|++.+...--......+..+....+ ....++++|+||+|...+
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 2456899999988654211222233333322211 123578999999998753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.5e-16 Score=111.33 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=91.0
Q ss_pred HhhhhcC--CcccEEEEEcCCCCCHHHHHHHHhc------CCCcc--ccccccee-------------------EEEEEE
Q 030149 8 LFSSLFG--NKEARILVLGLDNAGKTTILYRLQM------GEVVS--TIPTIGFN-------------------VETVQY 58 (182)
Q Consensus 8 ~~~~~~~--~~~~~v~v~G~~~~GKtsli~~~~~------~~~~~--~~~t~~~~-------------------~~~~~~ 58 (182)
++..+++ .+.++|+|.|+||+|||||++++.. .+... ..|+...+ .+.-..
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~ 122 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPV 122 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEE
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccc
Confidence 4444433 5789999999999999999999962 22211 11111110 000000
Q ss_pred ----------------------cCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhccc
Q 030149 59 ----------------------NNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEEL 116 (182)
Q Consensus 59 ----------------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
.+..+.+++|.|..... ......+|.+++|.++...+........+..+
T Consensus 123 ~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~------ 193 (327)
T d2p67a1 123 PSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV------ 193 (327)
T ss_dssp CC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH------
T ss_pred ccccccccchhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc------
Confidence 13467777777743321 22456789999999875554433333333222
Q ss_pred CCCeEEEEeecCCCCCCCCHHH----HHHHhccc--cccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 117 RGAVVLIFANKQDLPGALDDAA----VTEALELH--KIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 117 ~~~~iivv~nK~Dl~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+-++|+||+|+........ +...+... .......+++.|||.+|+|+++|++.|.+....
T Consensus 194 ---aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~ 259 (327)
T d2p67a1 194 ---ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 259 (327)
T ss_dssp ---CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ---ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 3389999999875322221 12222111 112234579999999999999999999876543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.8e-16 Score=112.32 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=78.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--Ccc-----------------cccccceeEEEEEE----------------cC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE--VVS-----------------TIPTIGFNVETVQY----------------NN 60 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~--~~~-----------------~~~t~~~~~~~~~~----------------~~ 60 (182)
+..||+|+|+.++|||||+.+++... ... +.-|+......+.+ +.
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 34579999999999999999996211 000 11133333444433 34
Q ss_pred eEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDL 130 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 130 (182)
+.++++||||+.+|.......++-+|++++|+|+.+.-.... ...+..... .+.|+++++||+|.
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT-~~~~~~a~~----~~~p~i~viNKiDr 160 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALG----ERIKPVVVINKVDR 160 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCEEEEEEECHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH-HHHHHHHHH----cCCCeEEEEECccc
Confidence 679999999999999999999999999999999987643222 233333333 47999999999996
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.61 E-value=4.7e-16 Score=106.16 Aligned_cols=116 Identities=15% Similarity=0.003 Sum_probs=67.5
Q ss_pred eEEEEEEcCCCCCCcchhhh-----ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCC
Q 030149 61 IKFQVWDLGGQTSIRPYWRC-----YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 135 (182)
..+.++|+||+......... -....+++++++|+.....-...................|.++++||+|+.....
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 46899999998765332211 1234678999999754322121111111111111123689999999999986433
Q ss_pred HHHHHHHh----------ccc---------------cccCCccEEEEecccCCCChHHHHHHHHHH
Q 030149 136 DAAVTEAL----------ELH---------------KIKNRQWAIFKTSAIKGEGLFEGLDWLSNT 176 (182)
Q Consensus 136 ~~~~~~~~----------~~~---------------~~~~~~~~~~~~S~~~~~gi~~l~~~l~~~ 176 (182)
.+...... ... ......++++++||++|+|+++|+..|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 22221110 000 001235679999999999999999988775
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.58 E-value=3.1e-15 Score=105.60 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=91.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------CCc--cccccc-------------------ceeEEEE-----------
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTI-------------------GFNVETV----------- 56 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~------~~~--~~~~t~-------------------~~~~~~~----------- 56 (182)
.+.++|.|.|+||+|||||++++... +.. ...|+. +...+.-
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 57899999999999999999999631 100 000000 0001000
Q ss_pred -----------EEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 57 -----------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 57 -----------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
...+..+.+++|.|....... ....+|..++|..+...+.....+.-+.. .+-++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHH---------HCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhh---------hhheeeE
Confidence 013568899999986543333 33468999999998776543333222222 3349999
Q ss_pred ecCCCCCCCCHHH-H----HHHhcccc--ccCCccEEEEecccCCCChHHHHHHHHHHHhh
Q 030149 126 NKQDLPGALDDAA-V----TEALELHK--IKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 126 nK~Dl~~~~~~~~-~----~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
||+|+.+...... . ...+.... ......+++.+||++|+|++++++.+.+....
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~ 257 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 257 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 9999875432211 1 11111111 12234569999999999999999999877653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=1.7e-11 Score=85.73 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=70.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcc--cccccc-eeEEEE------------------------------------
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNVETV------------------------------------ 56 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~--~~~t~~-~~~~~~------------------------------------ 56 (182)
...+|+|+|..++|||||+|++++.++.+ ..|+.. .+....
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999887644 222221 111110
Q ss_pred -------------EE---cCeEEEEEEcCCCCCC-------------cchhhhccCCCCeE-EEEEeCCCcchHHHHHHH
Q 030149 57 -------------QY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTQAI-IYVVDSSDTERLVIAKDE 106 (182)
Q Consensus 57 -------------~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~~~ 106 (182)
.. ....+.++|+||.... ..+...|+...+.+ +++.++..+.+......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 00 1235889999994221 23445666777755 455566555443333333
Q ss_pred HHHHHhhcccCCCeEEEEeecCCCCCC
Q 030149 107 FHAILEEEELRGAVVLIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~Dl~~~ 133 (182)
. +.......++++|+||+|...+
T Consensus 185 ~----~~~~~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 A----KEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp H----HHHCTTCSSEEEEEECGGGSCT
T ss_pred H----HHhCcCCCceeeEEeccccccc
Confidence 3 3333346789999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.19 E-value=7.3e-11 Score=82.76 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=41.7
Q ss_pred eEEEEEEcCCCCCC-------------cchhhhccCCCCeEEEEE-eCCCcchHHHHHHHHHHHHhhcccCCCeEEEEee
Q 030149 61 IKFQVWDLGGQTSI-------------RPYWRCYFPNTQAIIYVV-DSSDTERLVIAKDEFHAILEEEELRGAVVLIFAN 126 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
..+.++|+||.... ..+...|+..++.+++++ +...+..-..... +.+.......++++|+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~----~~~~~~~~~~r~i~Vit 206 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQ----LAKEVDPEGKRTIGVIT 206 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHH----HHHHHCSSCSSEEEEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHH----HHHHhCcCCCeEEEEEe
Confidence 46889999994321 235567788888876665 4433322222222 22333334578999999
Q ss_pred cCCCCCC
Q 030149 127 KQDLPGA 133 (182)
Q Consensus 127 K~Dl~~~ 133 (182)
|+|....
T Consensus 207 k~D~~~~ 213 (306)
T d1jwyb_ 207 KLDLMDK 213 (306)
T ss_dssp CTTSSCS
T ss_pred ccccccc
Confidence 9998644
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=3.6e-11 Score=84.82 Aligned_cols=79 Identities=27% Similarity=0.301 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcc-ccc--ccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~-~~~--t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
++|+++|.|+||||||+|++.+.+... ..| |...+...+. .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 579999999999999999998765322 222 3333222211 1225699999999
Q ss_pred CCC-------CcchhhhccCCCCeEEEEEeCCC
Q 030149 71 QTS-------IRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 71 ~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
--. ........++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 321 22233445788999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.17 E-value=2.5e-11 Score=83.99 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCcc---cccccceeEEEEEEcC-----------------eEEEEEEcCCCC----
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
.++|+++|-|+||||||++++.+.+... ...|...+...+...+ ..+.++|+||--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 3799999999999999999998765432 2335555555565532 358899999942
Q ss_pred ---CCcchhhhccCCCCeEEEEEeCC
Q 030149 73 ---SIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.........++.+|++++|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 22334456688999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.16 E-value=1.1e-10 Score=81.49 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCC--cc--cccccceeEEEEEEcC-----------------eEEEEEEcCCC--
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS--TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQ-- 71 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~~~--~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~-- 71 (182)
...++|+++|.|+||||||.|++.+... .. ...|+..+...+...+ ..+.++|.||.
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4678999999999999999999997543 22 2336666666666543 47899999982
Q ss_pred -----CCCcchhhhccCCCCeEEEEEeCCC
Q 030149 72 -----TSIRPYWRCYFPNTQAIIYVVDSSD 96 (182)
Q Consensus 72 -----~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
..........++.+|++++|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2233455667899999999999855
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.05 E-value=9e-11 Score=80.95 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=39.4
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEE-cCeEEEEEEcCCC
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~ 71 (182)
...+.++|+|+|.|++|||||+|++.+.+.....++.|.+...... .+.++.++||||.
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence 4457799999999999999999999998877776666655433222 4567999999995
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.1e-08 Score=68.08 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=71.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCccccc-------ccceeEEE--------EEE-----------------------
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIP-------TIGFNVET--------VQY----------------------- 58 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~-------t~~~~~~~--------~~~----------------------- 58 (182)
..-.+|.|.-|||||||+++++......... ..+..... ...
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~ 82 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 82 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHHH
Confidence 4567899999999999999997643211100 01111000 001
Q ss_pred -----cCeEEEEEEcCCCCCCcchhhhc--------cCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEe
Q 030149 59 -----NNIKFQVWDLGGQTSIRPYWRCY--------FPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFA 125 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
......++.+.|........... .-..+.+|.++|+...+..-.....+...+.. .-++++
T Consensus 83 ~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivl 156 (222)
T d1nija1 83 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILL 156 (222)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEE
T ss_pred HhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccc
Confidence 01244677777765443332211 11257889999987654322222223233332 238899
Q ss_pred ecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 126 NKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 126 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
||+|+.++ .+.+.+.+.. .++..++++++
T Consensus 157 NK~Dl~~~--~~~~~~~l~~---lNP~a~Ii~~~ 185 (222)
T d1nija1 157 TKTDVAGE--AEKLHERLAR---INARAPVYTVT 185 (222)
T ss_dssp ECTTTCSC--THHHHHHHHH---HCSSSCEEECC
T ss_pred cccccccH--HHHHHHHHHH---HhCCCeEEEee
Confidence 99999754 3444444433 35566677765
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.65 E-value=1.3e-08 Score=69.90 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=63.7
Q ss_pred hhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEE
Q 030149 78 WRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
....+..+|++|+|+|+.+|.+..+ ..+..++ .++|.++|+||+|+.++...+...+.+. ..+...+.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i~ 76 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLS 76 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHH-----hcCCccce
Confidence 3456889999999999988765432 2333333 2689999999999986543444444433 23445899
Q ss_pred ecccCCCChHHHHHHHHHHHhh
Q 030149 158 TSAIKGEGLFEGLDWLSNTLKS 179 (182)
Q Consensus 158 ~S~~~~~gi~~l~~~l~~~~~~ 179 (182)
+|+.++.+..++.+.+.+.+.+
T Consensus 77 isa~~~~~~~~~~~~~~~~l~~ 98 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQE 98 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhhh
Confidence 9999999998888877766554
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=7.7e-08 Score=63.58 Aligned_cols=87 Identities=28% Similarity=0.229 Sum_probs=58.6
Q ss_pred ccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 81 YFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...+.|.+++|+.+.+|+ +...+..++..... .+.+.++|+||+||.++.+.+.+..... ......+++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEec
Confidence 356889999999988765 33334444444433 4789999999999975432222222222 122345699999
Q ss_pred ccCCCChHHHHHHHH
Q 030149 160 AIKGEGLFEGLDWLS 174 (182)
Q Consensus 160 ~~~~~gi~~l~~~l~ 174 (182)
++++.|+++|.+.+.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred cccchhHhhHHHHhc
Confidence 999999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=3.2e-08 Score=65.47 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc---cc--------ccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST---IP--------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~---~~--------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
...+++|.+|+|||||+|++.+...... .. |..... +.+. ..-.++||||..++.
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l--~~l~-~gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFD-FGGYVVDTPGFANLE 161 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EECT-TSCEEESSCSSTTCC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeE--EEEC-CCcEEEeCCcccccc
Confidence 4679999999999999999987543321 11 222222 2222 236889999966543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.37 E-value=8.1e-08 Score=63.68 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCccc-----------ccccceeEEEEEEcCeEEEEEEcCCCCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
-..+++|++|+|||||+|++.+...... ..|..... +..++ -.++||||..++.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETT--EEEESSCSCSSCC
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--EecCC--CEEEECCcccccc
Confidence 4568999999999999999987543221 11222222 22333 3588999977654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=5.7e-08 Score=64.43 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=58.1
Q ss_pred ccCCCCeEEEEEeCCCcc-hHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCCCCCHHHHHHHhccccccCCccEEEEec
Q 030149 81 YFPNTQAIIYVVDSSDTE-RLVIAKDEFHAILEEEELRGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTS 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...+.|.+++|+++.+|+ +...+..++..... .+.+.++|+||+||.++.+.++..+.+... ....+.+++.+|
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~-y~~~g~~v~~~S 81 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAED-YRNIGYDVYLTS 81 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHH-HHHHTCCEEECC
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHH-Hhhccccceeee
Confidence 356899999999987764 34444444444332 478999999999998653322222222111 122356799999
Q ss_pred ccCCCChHHHHHHH
Q 030149 160 AIKGEGLFEGLDWL 173 (182)
Q Consensus 160 ~~~~~gi~~l~~~l 173 (182)
+.++.|+++|.+.+
T Consensus 82 a~~~~gl~~L~~~l 95 (231)
T d1t9ha2 82 SKDQDSLADIIPHF 95 (231)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred cCChhHHHHHHHhh
Confidence 99999999887655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=2e-06 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=21.6
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.+...|+++|++|+||||.+-++.
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34566778999999999999988875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=5e-06 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=20.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+..-|+++|++||||||.+-++.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445678899999999999988874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.21 E-value=3.1e-06 Score=55.27 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=38.9
Q ss_pred cCeEEEEEEcCCCCCCcchhhh------ccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEEEEeecCCCCC
Q 030149 59 NNIKFQVWDLGGQTSIRPYWRC------YFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVLIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 132 (182)
.+..+.++||+|.......... .....+-+++|.|+...+.- . .....+.+.. .+-=+++||.|...
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~--~-~~~~~f~~~~----~~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA--L-SVARAFDEKV----GVTGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH--H-HHHHHHHHHT----CCCEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhH--H-HHHHHHHhhC----CCCeeEEeecCccc
Confidence 3568999999996554332211 12356899999998665322 2 2222222221 12347889999643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.15 E-value=5.7e-07 Score=57.31 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+||+++|++|+|||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999975
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.15 E-value=2e-06 Score=56.24 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=15.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.--|+++|++|+||||.+-++.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 444567789999999999988885
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=9.2e-07 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+..-|+++|++||||||.+-++.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344567889999999999999885
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=98.05 E-value=1.4e-06 Score=55.09 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++.++|++.|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=1.5e-06 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
..+|+|.|++|||||||++.|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.97 E-value=1.9e-06 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-++|+++|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=2.9e-06 Score=53.36 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
-++|+|.+|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.90 E-value=3.5e-06 Score=52.06 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|++.|+|||||||+++.+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.90 E-value=3.9e-06 Score=54.03 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++.++|+++|+|||||||....|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999863
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.86 E-value=4.3e-06 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+|+|+|||||||+.+.+..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.86 E-value=5.4e-06 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+-++|+++|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 46779999999999999999999974
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.86 E-value=3.8e-06 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++++|+++|++||||||+.+.|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999863
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.82 E-value=5.9e-06 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...|+|+|+|||||||+.+.|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999964
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=6.3e-06 Score=52.59 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+||+++|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.80 E-value=6.4e-06 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||||+.+.|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=5.3e-05 Score=51.57 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=53.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCCcc------cccccceeEEEEEE---cCeEEEEEEcCCCCCCcc--------
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRP-------- 76 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~~~~~~------~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~-------- 76 (182)
..+..-|.|+|+.++|||+|+|.+++....- ...|.|.-...... .+..+.++||.|......
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~ 108 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 108 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHH
Confidence 4567789999999999999999999766321 22366654444433 467899999999543221
Q ss_pred hhhhccCCCCeEEEEEeCC
Q 030149 77 YWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~ 95 (182)
+....+--++++||-....
T Consensus 109 i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 109 IFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHHhCEEEEecccc
Confidence 1111223367777766543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=8e-06 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++|+++|+|||||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999964
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=8e-06 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++|+++|+|||||||..+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.70 E-value=1.1e-05 Score=50.74 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030149 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~ 38 (182)
+.|+|.+|||||||++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999996
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=2.2e-05 Score=50.43 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=28.2
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.++..-+...++-+++++|+||+|||++++.+..
T Consensus 31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence 34455556667788999999999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.69 E-value=1.1e-05 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
-|++.|++||||||+.+.|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.66 E-value=1.7e-05 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.0
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++..-|+++|.|||||||++.++..
T Consensus 10 ~~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 10 LSPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=1.5e-05 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+|++.|++|+|||||+..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999986
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=3e-05 Score=52.42 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=28.2
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++..-+....+-+++++|++|+|||++++.+..
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHH
Confidence 34455556667778999999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=1.7e-05 Score=49.25 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=2e-05 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++.|+|+|+|||||||....+..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.60 E-value=2.3e-05 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.2
Q ss_pred hcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 12 LFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 12 ~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.....++-|+|.|++|||||||.+.|.
T Consensus 17 ~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 17 IKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 444667889999999999999999985
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=1.7e-05 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999999988885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.9e-05 Score=52.64 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+-=.|+|+|++|||||||++.+.+-
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.58 E-value=2.8e-05 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-|++.|+||+||||++..+.+
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344589999999999999999965
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=2.7e-05 Score=50.17 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+...|+++|+|||||||+...|..
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35567799999999999999999964
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.54 E-value=2.8e-05 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++.++|+|-|++||||||....|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999963
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.53 E-value=2.3e-05 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 44568999999999999999887643
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=2.7e-05 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=-++++|+.|||||||++.+.+-
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3446899999999999999999753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.52 E-value=2.7e-05 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+|+|++|||||||++.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.51 E-value=3e-05 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+--.++++|++|||||||++.+.+
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.50 E-value=2.8e-05 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
--.++++|+.|||||||++.+.+-
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcc
Confidence 346889999999999999999764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.50 E-value=3.9e-05 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+-..|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445778899999999999998886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.49 E-value=3e-05 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.-|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999973
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.49 E-value=3e-05 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988853
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.48 E-value=3e-05 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=.++++|++|||||||++.+.+-
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcc
Confidence 4457999999999999999999753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=3.2e-05 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+-=.++++|++|||||||++.+.+-
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 34468999999999999999999753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.48 E-value=3.1e-05 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-|+|.|.+||||||+++.+.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999884
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=3.2e-05 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-|+++|++||||||+++.+...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=3.5e-05 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030149 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56799999999999999998643
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=3.5e-05 Score=48.26 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.--++++|++||||||+.+.|..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.45 E-value=3.8e-05 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-|++.|++||||||+.+.+...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.44 E-value=3.8e-05 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33468999999999999999997643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=3.9e-05 Score=49.26 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
|+|+|++||||||+++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=3.5e-05 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=-++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34568999999999999999998643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.43 E-value=0.00041 Score=42.83 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=38.2
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhcCCC---cccccccceeEEEEEEcCeEEEEEEcCC
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV---VSTIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
+.+.+.+...++..-|++-|+-|||||||++.++..-- ...+||..... ........+.=+|.--
T Consensus 21 la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~-~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE-EYNIAGKMIYHFDLYR 88 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE-EEEETTEEEEEEECTT
T ss_pred HHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEE-eeccCCceEEEEEEec
Confidence 34444333335566789999999999999999975322 22566665322 1122444444455543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.42 E-value=4e-05 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.+-=.++|+|+.|||||||++.+.+-
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34457899999999999999999763
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=4.3e-05 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030149 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~ 40 (182)
|+++|++|+|||||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.41 E-value=5.9e-05 Score=50.49 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....|++.|+||+|||++++++..
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHhh
Confidence 3456799999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.41 E-value=6.1e-05 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...+|+|.|++||||||++++++.
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGG
T ss_pred hCCCEEEEeeccccchHHHHHHhh
Confidence 345799999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.40 E-value=5e-05 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..-|+++|+|||||||+...|..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999964
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.39 E-value=4.8e-05 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=.++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468999999999999999998654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.35 E-value=3.4e-05 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=-++++|+.|||||||++.+.+-.
T Consensus 26 Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3458999999999999999998643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=5.8e-05 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030149 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-++++||+|||||||++.+...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.33 E-value=6.1e-05 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|+||+||||+++.+.+
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.33 E-value=7.8e-05 Score=46.74 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
-|++.|.+||||||+.+.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467779999999999999965
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.33 E-value=5.9e-05 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=-++++|+.|||||||++.+.+-.
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=7.2e-05 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030149 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++-|+|.|++||||||+.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999884
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.31 E-value=3.7e-05 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+-=.++|+|++|||||||++.+.+
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHh
Confidence 3456899999999999999998865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=4.6e-05 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
-=-++++|+.|||||||++.+.+-
T Consensus 25 Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 25 GEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999873
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.30 E-value=6.8e-05 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
.|+++|++||||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47789999999999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.30 E-value=7.6e-05 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+...+++.|++|+||||+++.+..
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445799999999999999999865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00011 Score=50.74 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.|+.......++-|+|.|++||||||+.+.+.
T Consensus 70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 34455555778999999999999999988874
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.28 E-value=7.2e-05 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=.++++|+.|||||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 44568999999999999999998643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=7.6e-05 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|+||+||||+++.+..
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHh
Confidence 345799999999999999999874
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.26 E-value=7.9e-05 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
-=-++++|+.|||||||++.+.+-.
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.23 E-value=4e-05 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
+-=.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34578999999999999999998643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00016 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....|++.|+||+|||++++++..
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHH
Confidence 345699999999999999999985
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=4.8e-05 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+...|.++|.+||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999963
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.21 E-value=9.4e-05 Score=49.67 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
=-++++|+.|||||||++.+.+-.
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 357999999999999999998653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.20 E-value=9.3e-05 Score=47.53 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..+.+-|+|-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999999964
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.19 E-value=9.9e-05 Score=46.89 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=17.0
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q 030149 19 RI-LVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v-~v~G~~~~GKtsli~~~~ 38 (182)
|| +|.|.+||||||+++.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 45 567999999999999985
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.14 E-value=0.00013 Score=52.02 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.8
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++..-+.+...-|++++|+||+|||++++.+..
T Consensus 32 ~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 32 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 4444556667788899999999999999987753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.13 E-value=0.00015 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..-.|+|.|++|+|||||+.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 345688999999999999999863
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00018 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+..++++.|++|+||||+++.+..
T Consensus 34 ~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 34 GNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCchhhHHHHHH
Confidence 4445799999999999999998863
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00021 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+..++++.|++|+||||++..++.
T Consensus 31 ~~~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 31 ANLPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp TTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Confidence 3345699999999999999999874
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.00022 Score=47.92 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....+++.|+||+|||++++++..
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceeEEecCCCCCchHHHHHHHH
Confidence 3455799999999999999999975
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.11 E-value=0.00026 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.....+++.|++|+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.10 E-value=0.00016 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++-|+|.|.+||||||+.+.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999999998864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.09 E-value=0.00023 Score=46.24 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.8
Q ss_pred hhhhcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 9 ~~~~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+...+++..-|.+.|.|||||||+.+.|.
T Consensus 16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 16 RTELRNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HHHHHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445566788899999999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.07 E-value=0.00018 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
....+++.|++|+||||++..++..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.05 E-value=0.00016 Score=49.92 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.-.++++||||+|||.|.+++..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 346799999999999999999974
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00026 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....+++.|+||+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHH
Confidence 345699999999999999999974
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00027 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+..++++.|++|+||||++..++.
T Consensus 34 ~~~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 34 KLPHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChhHHHHHHHH
Confidence 334699999999999999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00027 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+-|+|.|+|||||+|....+..
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578889999999999999863
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.00028 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+-||+++||+|||||-|++++..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999963
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.00047 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
.....|++.|++|+|||+|++++...
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 34557999999999999999999754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00047 Score=44.67 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=26.3
Q ss_pred hHHHhhhhcCCcccE-EEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEAR-ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~-v~v~G~~~~GKtsli~~~~~ 39 (182)
++++.+.....+-.. +++.|++|+||||++..+..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 455555555555555 99999999999999998764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.77 E-value=0.00064 Score=45.72 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.|+||+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00055 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHH
Q 030149 15 NKEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~ 37 (182)
.+.+-|+|.|.+|||||||...+
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHH
Confidence 55788999999999999998766
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.00032 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030149 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++++.|++|+||||++..+..
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999865
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.69 E-value=0.00028 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=17.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
.+..-|+|.|++||||||+.++|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 455679999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.69 E-value=0.00055 Score=44.09 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00079 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---+.|.|+||+|||+|+..++.
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 445688999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00087 Score=43.35 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030149 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-|+|.|.+||||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45889999999999999988643
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=96.46 E-value=0.039 Score=36.59 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=40.8
Q ss_pred CeEEEEEEcCCCCCCcc-hhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCe-EEEEeecCCCCC
Q 030149 60 NIKFQVWDLGGQTSIRP-YWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAV-VLIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 132 (182)
...+.++|+|+...... ........+|.++++.+.. ..++.........+.......+.+ .-++.|+.+...
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence 35799999997543322 2233345678888888763 445554444443333322223333 347889988754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.0013 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+-|+|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998853
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.39 E-value=0.0011 Score=46.69 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++..-+++.||||+|||++..++.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999999999863
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.00099 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---+.|.|+||+|||+|+.++..
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445688999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.29 E-value=0.0011 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.--++|.|+||+|||+|.-+++.
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 334688999999999999998864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.29 E-value=0.00057 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
=+|++.|+||+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 379999999999999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0013 Score=42.52 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-|+|-|..||||||+++.|.
T Consensus 4 fIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999999885
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.25 E-value=0.0023 Score=43.25 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
....-|+|.|..|+|||||+..+.+
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3455788999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.25 E-value=0.0015 Score=41.02 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
..-|++.|++|+||||+.-.+....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999987543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.16 E-value=0.0017 Score=40.75 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999987543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.16 E-value=0.0024 Score=45.56 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=25.0
Q ss_pred hhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 10 SSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
........--|+|.|++||||||.+.+++.
T Consensus 151 ~~l~~~~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 151 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHhhhhceEEEEcCCCCCccHHHHHHhh
Confidence 444556677899999999999999999975
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0011 Score=43.65 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..|+|-|..||||||+++.|..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGG
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=96.13 E-value=0.04 Score=34.44 Aligned_cols=31 Identities=29% Similarity=0.156 Sum_probs=22.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-cccccc
Q 030149 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG 50 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~~~~~~-~~~t~~ 50 (182)
++|+|...||||.+.+++....... |..|..
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~ 33 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEccC
Confidence 6899999999999999997543222 455543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=96.10 E-value=0.0017 Score=44.78 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+++.|+||+|||.+.+.+..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 345579999999999999964
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.00026 Score=45.30 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.+|+|+.||||||++.++.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999984
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.08 E-value=0.0017 Score=42.66 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+.--++|.|+||+|||+|+.++..
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 455688999999999999988853
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0025 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030149 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~ 39 (182)
-.++++|++|+|||.|+.++..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3789999999999999999863
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0019 Score=41.75 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
=|+|-|..||||||+++.+.
T Consensus 5 lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47777999999999888774
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.97 E-value=0.002 Score=42.28 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++|.|++|+|||+|+..++.
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334678999999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.96 E-value=0.0025 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
...-+++++||+|||||-+.+++..
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 4567899999999999999999863
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.96 E-value=0.0015 Score=45.28 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++.++|.|=|..|+||||+++.+..
T Consensus 2 ~m~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 2 KMGVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred CccceEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999964
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.93 E-value=0.0024 Score=39.82 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030149 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~~~~~ 41 (182)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3568999999999999998887543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0029 Score=41.72 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
.+++.|++|+|||+++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999875
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0016 Score=44.50 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 030149 20 ILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~ 37 (182)
-+++|+.||||||++.++
T Consensus 27 nvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEECCTTTCSTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 368999999999999988
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0026 Score=41.94 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+---++|.|++|+|||+|..+++.
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0025 Score=45.34 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=17.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHH
Q 030149 16 KEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~ 37 (182)
+.++ +|+|+.|||||+++.++
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHH
Confidence 4454 47899999999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0028 Score=41.65 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999964
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.58 E-value=0.0038 Score=41.88 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-++|.|+||+|||+|+..+.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999988775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.54 E-value=0.0038 Score=40.57 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++.--++|.|++|+|||+|+..++
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345567888999999999987764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.50 E-value=0.0041 Score=40.28 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030149 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~v~G~~~~GKtsli~~~~~ 39 (182)
+.+.|++|+|||-|++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999964
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.44 E-value=0.0052 Score=42.57 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++|.|=|..|+||||+++.+..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 457999999999999999999964
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.41 E-value=0.003 Score=42.89 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q 030149 19 RILVLGLDNAGKTTIL 34 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli 34 (182)
.++|.|.+||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4789999999999764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.38 E-value=0.0049 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030149 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~~ 39 (182)
-|++.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999954
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.36 E-value=0.0043 Score=39.61 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+++--+++.|++++|||.++.+++.
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 5667889999999999999998853
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.35 E-value=0.0046 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
..++|.|=|..|+||||+++.+..
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred CceEEEEECCcCCCHHHHHHHHHH
Confidence 346799999999999999999964
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0044 Score=44.34 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
...+++|+|.+|||||+++..++
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHH
Confidence 34569999999999999988775
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=95.30 E-value=0.17 Score=33.71 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred CeEEEEEEcCCCCCCcchhh-hccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeE-EEEeecCCCC
Q 030149 60 NIKFQVWDLGGQTSIRPYWR-CYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVV-LIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~ 131 (182)
.+.+.++|+|+......... .....++.++++.... ..+..........+.......+.++ -++.|+.+..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 46889999987543322222 2234567777666543 4444444444444433222234444 4788998754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.29 E-value=0.046 Score=36.48 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=47.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
..--+.+.|++++|||+|+-.+....- -.+....++||-+.-........-+ +.|-++ ++.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~il-~~~-- 119 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQ---------------AAGGVAAFIDAEHALDPDYAKKLGV-DTDSLL-VSQ-- 119 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHH---------------HTTCEEEEEESSCCCCHHHHHHHTC-CGGGCE-EEC--
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHHh---------------cCCCEEEEEECCccCCHHHHHHhCC-CHHHeE-Eec--
Confidence 345577899999999999877652110 1244567889998543332222222 233333 344
Q ss_pred CcchHHHHHHHHHHHHhhcccCCCeEEEEeecC
Q 030149 96 DTERLVIAKDEFHAILEEEELRGAVVLIFANKQ 128 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
+.+.+...+.+..+.. .+.+.++|+-=+
T Consensus 120 -~~~~E~~~~~~~~l~~----~~~~~liIiDSi 147 (269)
T d1mo6a1 120 -PDTGEQALEIADMLIR----SGALDIVVIDSV 147 (269)
T ss_dssp -CSSHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred -CCCHHHHHHHHHHHHh----cCCCCEEEEecc
Confidence 3344555544444433 244555554333
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.24 E-value=0.0041 Score=42.57 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCHHHHH
Q 030149 19 RILVLGLDNAGKTTIL 34 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli 34 (182)
.++|.|.+||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0058 Score=39.51 Aligned_cols=21 Identities=48% Similarity=0.506 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
.=|++=|..||||||+++.|.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 348899999999999998885
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.011 Score=40.63 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred Cccc-EEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEA-RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~-~v~v~G~~~~GKtsli~~~~ 38 (182)
.+.. .++++|++|+|||.+.+.+.
T Consensus 50 ~kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 50 NRPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCCceEEEEECCCcchHHHHHHHHH
Confidence 3444 67888999999999999885
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.96 E-value=0.012 Score=39.38 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 5667788889999999999999864
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0076 Score=40.25 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-.++.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999998774
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.82 E-value=0.0091 Score=39.52 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=26.0
Q ss_pred chHHHhhhhc--CCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 4 MFTRLFSSLF--GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 4 ~~~~~~~~~~--~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.++++.+... .....-|+|.|++|+||+.+.+.+-.
T Consensus 8 ~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 8 KMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 4555555432 24556789999999999999998853
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.01 Score=40.17 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
.+-=|++|+|++|+|||+|+..+..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 3456899999999999999988864
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.011 Score=41.35 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHH
Q 030149 17 EARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~ 37 (182)
..-++|.|++|+|||+++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 346889999999999987553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.34 E-value=0.071 Score=35.52 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=41.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCcccccccceeEEEEEEcCeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCc
Q 030149 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
.-+.+.|++++|||+|+-.++..-. ..+..+.++||-+.-........-+ +.|-++ ++. +
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~~aq---------------k~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~---~ 117 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVAQAQ---------------KAGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQ---P 117 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH---------------HTTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EEC---C
T ss_pred eEEEEecCCccchHHHHHHHHHHHH---------------hCCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEc---C
Confidence 4677899999999999988763211 1234567889887443322222222 233333 344 3
Q ss_pred chHHHHHHHHHHHHh
Q 030149 98 ERLVIAKDEFHAILE 112 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~ 112 (182)
.+.+...+.+..+.+
T Consensus 118 ~~~E~~~~~~~~l~~ 132 (268)
T d1xp8a1 118 DNGEQALEIMELLVR 132 (268)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 444555555555443
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.22 E-value=0.15 Score=32.64 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCCCCCcchhhhccCCCCeEEEEEeCCCcchHHHHHHHHHHHHhhcccCCCeEE-EEeecCCCCCCCCHHH
Q 030149 60 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTERLVIAKDEFHAILEEEELRGAVVL-IFANKQDLPGALDDAA 138 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~~~~~~~ 138 (182)
.+.+.++|+|+... ......+..+|.++++...+ ..+..........+. ..+.|++ +|+|+.|.......+.
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~----~~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK----KAGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH----HTTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHh----hhhhhhhhhhhcccccccchhhhH
Confidence 46899999998653 33444567799999999864 334444444443332 2456665 8899998765433333
Q ss_pred H
Q 030149 139 V 139 (182)
Q Consensus 139 ~ 139 (182)
.
T Consensus 184 ~ 184 (237)
T d1g3qa_ 184 A 184 (237)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.50 E-value=0.029 Score=32.51 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 030149 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
++-+.|.+-|..|+|||++.+++.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 566899999999999999999984
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.027 Score=37.57 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..--+.+.|++|+|||+|+-.++
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHH
Confidence 33457899999999999987775
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.02 E-value=0.035 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 030149 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
+-=|++++|++|+|||+|+..+..
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 334799999999999999888863
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.32 E-value=0.042 Score=32.30 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=17.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
..-..++.+++|+|||.++-.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 33455789999999999886654
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.029 Score=37.37 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHH
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~ 37 (182)
+..+..+....+..+-++.|+.|||||-..-..
T Consensus 92 i~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 92 HQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence 344556666678889999999999999875444
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.044 Score=35.75 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHH
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~ 37 (182)
...+.....+..+.++.|++|||||-..-..
T Consensus 66 ~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 66 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence 4555566677889999999999999885554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.35 E-value=0.085 Score=33.40 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=25.0
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHhc
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~~ 39 (182)
++++.++ .....+++-|++|+|||++...+..
T Consensus 6 l~~~i~~---~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 6 LKRIIEK---SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp HHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHhc---CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455443 3567999999999999999998864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.12 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHhhhhcCCcccEEEEEcCCCCCHHHHHHHH
Q 030149 7 RLFSSLFGNKEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~ 37 (182)
.......++...-|++.|..|+||||+.-.+
T Consensus 10 ~~~~~~~~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 10 ALVDDIARNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp HHHHHHHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 3434445455555666799999999986665
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.11 E-value=0.11 Score=32.42 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=17.7
Q ss_pred hHHHhhhhcCCcccEEEEEcCCCCCHHHH
Q 030149 5 FTRLFSSLFGNKEARILVLGLDNAGKTTI 33 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~v~G~~~~GKtsl 33 (182)
..+.++.... -++++++++|+|||..
T Consensus 14 Q~~~~~~~~~---~n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 14 QEVIYAKCKE---TNCLIVLPTGLGKTLI 39 (200)
T ss_dssp HHHHHHHGGG---SCEEEECCTTSCHHHH
T ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHH
Confidence 3344444432 3578999999999974
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.085 Score=34.37 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030149 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli~~~~ 38 (182)
--++|.|+..+||||+++++.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 347899999999999999984
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.78 E-value=0.044 Score=31.98 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=15.0
Q ss_pred CcccEEEEEcCCCCCHHHH
Q 030149 15 NKEARILVLGLDNAGKTTI 33 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKtsl 33 (182)
++.-++++.+++|+|||..
T Consensus 5 ~~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp STTCEEEECCCTTSSTTTT
T ss_pred HcCCcEEEEcCCCCChhHH
Confidence 3456788889999999944
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.46 E-value=0.098 Score=33.84 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-+++.|+..+||||+++++.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 37899999999999999984
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.92 E-value=0.078 Score=35.64 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 030149 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~~~ 40 (182)
+-=|++++|++|+|||+|+..+..+
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHHh
Confidence 4457899999999999998777543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.09 Score=35.69 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=13.3
Q ss_pred EEEEcCCCCCHHHHH
Q 030149 20 ILVLGLDNAGKTTIL 34 (182)
Q Consensus 20 v~v~G~~~~GKtsli 34 (182)
-++.|-+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 479999999999975
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.66 E-value=0.16 Score=32.10 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.1
Q ss_pred cEEEEEcCC-CCCHHHHHHHHh
Q 030149 18 ARILVLGLD-NAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~v~G~~-~~GKtsli~~~~ 38 (182)
.++.|.|.. |+||||+.-.|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 478899995 999999977763
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.44 E-value=0.097 Score=35.66 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=13.4
Q ss_pred EEEEcCCCCCHHHHH
Q 030149 20 ILVLGLDNAGKTTIL 34 (182)
Q Consensus 20 v~v~G~~~~GKtsli 34 (182)
-++.|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 589999999999975
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.25 E-value=0.098 Score=34.97 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 030149 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
+-=|++|+|++|+|||+|+..+.
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHHH
Confidence 34578999999999999987654
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.80 E-value=0.12 Score=35.18 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.6
Q ss_pred EEEEcCCCCCHHHHH
Q 030149 20 ILVLGLDNAGKTTIL 34 (182)
Q Consensus 20 v~v~G~~~~GKtsli 34 (182)
-++.|-+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 469999999999987
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.28 Score=32.51 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHH
Q 030149 17 EARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 17 ~~~v~v~G~~~~GKtsli~~~ 37 (182)
..-|.+.|..|+||||+.-.+
T Consensus 8 p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHH
Confidence 345678999999999987666
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.63 E-value=0.094 Score=33.07 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.6
Q ss_pred cEEEEEcCCCCCHHHHH
Q 030149 18 ARILVLGLDNAGKTTIL 34 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli 34 (182)
-++++.+++|+|||...
T Consensus 41 ~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp SCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCCchhHHH
Confidence 47899999999999763
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.37 E-value=1 Score=26.57 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=14.3
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030149 21 LVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 21 ~v~G~~~~GKtsli~~~~ 38 (182)
+++|+=.|||||-+-+..
T Consensus 11 lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 11 VIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHHH
Confidence 458999999999765553
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=86.66 E-value=0.23 Score=29.38 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.9
Q ss_pred EEEcCCCCCHHH-HHHHH
Q 030149 21 LVLGLDNAGKTT-ILYRL 37 (182)
Q Consensus 21 ~v~G~~~~GKts-li~~~ 37 (182)
+++|+=.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 56555
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.94 E-value=0.21 Score=33.30 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.0
Q ss_pred CcccEEEEEcCCCCCHHH
Q 030149 15 NKEARILVLGLDNAGKTT 32 (182)
Q Consensus 15 ~~~~~v~v~G~~~~GKts 32 (182)
.+.-.+++.+++|+|||.
T Consensus 7 ~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 7 RKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp STTCEEEECCCTTSSTTT
T ss_pred hcCCcEEEEECCCCCHHH
Confidence 455668999999999995
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.49 E-value=0.6 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHHHHHh
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli~~~~ 38 (182)
...++..... -+.++.+++|+|||-++-.+.
T Consensus 76 ~eav~~~~~~--~~~ll~~~tG~GKT~~a~~~~ 106 (206)
T d2fz4a1 76 EKALERWLVD--KRGCIVLPTGSGKTHVAMAAI 106 (206)
T ss_dssp HHHHHHHTTT--SEEEEEESSSTTHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcEEEeCCCCCceehHHhHH
Confidence 3444444433 367788999999998765554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.27 E-value=2.6 Score=24.73 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=17.1
Q ss_pred EEEEEcC-CCCCHHHHHHHHhcCCC
Q 030149 19 RILVLGL-DNAGKTTILYRLQMGEV 42 (182)
Q Consensus 19 ~v~v~G~-~~~GKtsli~~~~~~~~ 42 (182)
||+|+|. ..+| +++...+.....
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~~ 25 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSPL 25 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred eEEEECCCChHH-HHHHHHHHhCCc
Confidence 7999995 7899 666777765544
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.01 E-value=0.18 Score=32.58 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred cEEEEEcCCCCCHHHHH
Q 030149 18 ARILVLGLDNAGKTTIL 34 (182)
Q Consensus 18 ~~v~v~G~~~~GKtsli 34 (182)
-.+++++++|+|||...
T Consensus 59 ~~~~i~apTGsGKT~~~ 75 (237)
T d1gkub1 59 ESFAATAPTGVGKTSFG 75 (237)
T ss_dssp CCEECCCCBTSCSHHHH
T ss_pred CCEEEEecCCChHHHHH
Confidence 47899999999999653
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=81.65 E-value=2.9 Score=25.43 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=17.6
Q ss_pred CcccEEEEEcC-CCCCHHHHHHHHhcCC
Q 030149 15 NKEARILVLGL-DNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~v~G~-~~~GKtsli~~~~~~~ 41 (182)
.+.+||.|+|. .+.|= +|+-.+..+.
T Consensus 22 k~~~kV~I~GA~G~Ig~-~l~~~La~g~ 48 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISN-HLLFKLASGE 48 (175)
T ss_dssp CCCEEEEEETTTSHHHH-HHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHH-HHHHHHHcCc
Confidence 46789999997 55664 4555555444
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.64 Score=31.53 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=24.0
Q ss_pred HHHhhhhcCCcccEEEEEcCCCCCHHHHH
Q 030149 6 TRLFSSLFGNKEARILVLGLDNAGKTTIL 34 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~v~G~~~~GKtsli 34 (182)
..+..+........|+..|.+|||||-.+
T Consensus 65 ~~lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 65 KKIVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCCcceeeecccCCCCceec
Confidence 34556667788899999999999999876
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.56 E-value=0.51 Score=35.72 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030149 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~v~G~~~~GKtsli~~~~ 38 (182)
-|++-|.+|||||.-.+.++
T Consensus 88 sIiisGeSGsGKTe~~k~il 107 (684)
T d1lkxa_ 88 CVIISGESGAGKTEASKKIM 107 (684)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 59999999999999877663
|