Citrus Sinensis ID: 030165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccEEcccccHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHcccccccEEEEEEccEEEEEEEccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcHHHHcccEEcccccHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEEEEcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAMKNCFQVSSVYStragvvqcyqpfssvkkihlpisnglnksnfsftsscsslslplgsrsrnsLILCKAREAVNEVQVVTDSswenlvissenpvlvefwapwcgpcrmiAPAIEELAKEYAGKVAcfklntddspniatkygirsiptvlffkngekkesiigavpkstlsstldkyve
Flexible Loop (DISEMBL)
MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKlntddspniatkygirsiptVLFFKNGEkkesiigavpkstlsstldkyve
Low Complexity Region (SEG)
MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKsnfsftsscsslslplgsrsrnslILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE
Disordered region (IsUnstruct)
*****CFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFT**************RNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE****II*****************
Disordered Region (DISOPRED)
*****CFQVSSVY****************************************************************VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE
Disordered Region (DISEMBL)
MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS***********
Disordered Region (DISPRO)
***************************************************************NSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P48384	172	Thioredoxin M-type, chlor	N/A	no	0.631	0.668	0.782	7e-52
P07591	181	Thioredoxin M-type, chlor	N/A	no	0.961	0.966	0.556	1e-50
Q41864	167	Thioredoxin M-type, chlor	N/A	no	0.895	0.976	0.494	8e-46
Q9ZP21	175	Thioredoxin M-type, chlor	N/A	no	0.923	0.96	0.489	2e-45
Q9ZP20	172	Thioredoxin M5, chloropla	yes	no	0.934	0.988	0.535	9e-43
Q9SEU8	186	Thioredoxin M2, chloropla	yes	no	0.807	0.790	0.506	7e-42
Q9XGS0	177	Thioredoxin M-type, chlor	N/A	no	0.681	0.700	0.540	1e-40
Q6H7E4	173	Thioredoxin M1, chloropla	yes	no	0.670	0.705	0.588	4e-40
Q9SEU6	193	Thioredoxin M4, chloropla	no	no	0.769	0.725	0.513	1e-38
Q7X8R5	180	Thioredoxin M2, chloropla	no	no	0.637	0.644	0.550	9e-37

>sp|P48384|TRXM_PEA Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1

 Score =  202 bits (515), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 104/115 (90%)

Query: 67  ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK 126
           +L  AREAVNEVQVV DSSW+ LVI SE PVLV+FWAPWCGPCRMIAP I+ELAKEYAGK
Sbjct: 58  VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGK 117

Query: 127 VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + C+KLNTD+SPN ATKYGIRSIPTVLFFKNGE+K+S+IGAVPK+TLS  ++KY+
Sbjct: 118 IKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.
Pisum sativum (taxid: 3888)

>sp|P07591|TRXM_SPIOL Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 137/185 (74%), Gaps = 10/185 (5%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCY----QPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSL 56
           MA++NC Q+S+  S     V+ +    QP S   K+++P   GL +S   F +  SS+S 
Sbjct: 1   MAIENCLQLSTSASVGTVAVKSHVHHLQPSS---KVNVPTFRGLKRS---FPALSSSVSS 54

Query: 57  PLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAI 116
               + R S ++CKA EAV EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I
Sbjct: 55  SSPRQFRYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVI 114

Query: 117 EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176
           +ELAKEY+GK+A +KLNTD++P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +
Sbjct: 115 DELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDS 174

Query: 177 LDKYV 181
           ++KY+
Sbjct: 175 IEKYL 179

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.

Spinacia oleracea (taxid: 3562)

>sp|Q41864|TRXM_MAIZE Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1

 Score =  182 bits (463), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 123/182 (67%), Gaps = 19/182 (10%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MAM+ CF+  ++++          P  S  ++ +         N    S  +   L +G 
Sbjct: 1   MAMETCFRAWALHA----------PAGSKDRLLV--------GNLVLPSKRALAPLSVGR 42

Query: 61  -RSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
             +R    +C+++ AV+EV V  + +W+ LV++ E PVLVEFWAPWCGPCRMIAP I+EL
Sbjct: 43  VATRRPRHVCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDEL 102

Query: 120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           AK+YAGK+ C K+NTDDSPN+A+ YGIRSIPTVL FK GEKKES+IGAVPKSTL++ +DK
Sbjct: 103 AKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDK 162

Query: 180 YV 181
           Y+
Sbjct: 163 YI 164

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.

Zea mays (taxid: 4577)

>sp|Q9ZP21|TRXM_WHEAT Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1

 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 122/186 (65%), Gaps = 18/186 (9%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQ-----CYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLS 55
           MA++ C +  ++Y+ +AG+ +      Y P          +S    KS            
Sbjct: 1   MALETCLRGWALYAPQAGIRERLSSGSYAPSRPRTAAPAVVSPSPYKSA----------- 49

Query: 56  LPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA 115
             L +  R S  +CK +  V+EV V  + +W+N+VI+ E+PVLVEFWAPWCGPCRMIAP 
Sbjct: 50  --LVAARRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPV 107

Query: 116 IEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS 175
           I+ELAK+Y GK+ C K+NTDD PNIA+ YGIRSIPTVL FK+GEKKES+IGAVPK+TL +
Sbjct: 108 IDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCT 167

Query: 176 TLDKYV 181
            +DKY+
Sbjct: 168 IIDKYI 173

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.

Triticum aestivum (taxid: 4565)

>sp|Q9ZP20|TRXM5_ORYSJ Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MA++ CF+  +        +   QP SS       + +G   S      S +S S PL  
Sbjct: 1   MALETCFRAWAT-------LHAPQPPSSGGSRDRLLLSGAGSSQSKPRLSVASPS-PLRP 52

Query: 61  RSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA 120
            SR     C+    V+EV V  + +W+++V+ SE PVLVEFWAPWCGPCRMIAP I+ELA
Sbjct: 53  ASR---FACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELA 109

Query: 121 KEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           KEY GK+ C K+NTDDSPNIAT YGIRSIPTVL FKNGEKKES+IGAVPK+TL++ +DKY
Sbjct: 110 KEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKY 169

Query: 181 V 181
           V
Sbjct: 170 V 170

Thiol-disulfide oxidoreductase probably involved in the redox regulation of chloroplastic enzymes. Required for chloroplast biogenesis and differentiation. Functions as an electron donor for plastidial 2-Cys peroxiredoxins and participates in hydrogen peroxide scavenging system in chloroplasts. Possesses reducing activity towards insulin disulfide bonds.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SEU8|TRXM2_ARATH Thioredoxin M2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2

 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 111/148 (75%), Gaps = 1/148 (0%)

Query: 34  LPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISS 93
           LP S+GL        +S +S+  P  SR R +++ C+A+E   ++QVV DS+W++LV+ +
Sbjct: 39  LPESSGLRIRLSLSPASLTSIHQPRVSRLRRAVV-CEAQETTTDIQVVNDSTWDSLVLKA 97

Query: 94  ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153
             PV+V+FWAPWCGPC+MI P + +LA+ Y GK+  +KLNTD+SPN   +YG+RSIPT++
Sbjct: 98  TGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIM 157

Query: 154 FFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            F  GEKK++IIGAVPK+TL+S+LDK++
Sbjct: 158 IFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

Thiol-disulfide oxidoreductase that may participate in various redox reactions. May activate NADP-malate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XGS0|TRXM_BRANA Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 98/124 (79%)

Query: 59  GSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEE 118
            SR R   I+C+A++    + +V DS+WE+LV+ ++ PV+V+FWAPWCGPC+MI P + E
Sbjct: 54  ASRLRRGGIICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNE 113

Query: 119 LAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           LA++Y GK+  FKLNTDDSP    KYG+RSIPT++ F  GEKK++IIGAVPK+TL++++D
Sbjct: 114 LAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSID 173

Query: 179 KYVE 182
           K+++
Sbjct: 174 KFLQ 177

Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase.

Brassica napus (taxid: 3708)

>sp|Q6H7E4|TRXM1_ORYSJ Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0639900 PE=2 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 60  SRSRNSLILCKAREAVNEVQV--VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIE 117
            R+R   ++C A+      QV  VT S+W++LV+ SE PVLVEFWA WCGPC+MI P I 
Sbjct: 48  GRARGVSVVCAAQGQETSFQVPDVTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIG 107

Query: 118 ELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
           +L+KEY GK+ C+KLNTD++P+IAT++GIRSIPT++ FKNGEKK+++IGAVP+STL S++
Sbjct: 108 KLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSI 167

Query: 178 DKYV 181
           DKY+
Sbjct: 168 DKYI 171

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 105/144 (72%), Gaps = 4/144 (2%)

Query: 42  KSNFSFTSSCSSLSLPLGSR-SRNSLILCKARE---AVNEVQVVTDSSWENLVISSENPV 97
           KS+ S  +  +SL     +R +R   I C+A++   A  EV  ++DS W+  V+ S+ PV
Sbjct: 48  KSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPV 107

Query: 98  LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157
           LVEFWAPWCGPCRMI P +++LAK++AGK   +K+NTD+SPN A +YGIRS+PTV+ FK 
Sbjct: 108 LVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKG 167

Query: 158 GEKKESIIGAVPKSTLSSTLDKYV 181
           GEKK+SIIGAVP+ TL  T+++++
Sbjct: 168 GEKKDSIIGAVPRETLEKTIERFL 191

Thiol-disulfide oxidoreductase involved in the redox regulation of enzyme of the oxidative pentose phosphate pathway. Under reducing conditions, inhibits the glucose-6-phosphate dehydrogenase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7X8R5|TRXM2_ORYSJ Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0530600 PE=2 SV=2

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 97/118 (82%), Gaps = 2/118 (1%)

Query: 67  ILCKAREAVNEVQV--VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA 124
           ++C  +     +QV  VT S+W++LV+ SE PVLV +WA WCGPC+MI P + +L+KEY 
Sbjct: 62  VVCAVQGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPVVGKLSKEYE 121

Query: 125 GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           GK+ C+KLNTD++P+IA++YG+RSIPT++ FKNGEKK+++IGAVP+STL ++++K+VE
Sbjct: 122 GKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLIASIEKFVE 179

Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
225457807	183	PREDICTED: thioredoxin M-type, chloropla	1.0	0.994	0.697	7e-66
255558440	183	thioredoxin m(mitochondrial)-type, putat	0.978	0.972	0.736	6e-65
351727076	181	uncharacterized protein LOC100305596 [Gl	0.956	0.961	0.670	5e-63
224066755	179	thioredoxin m [Populus trichocarpa] gi|2	0.978	0.994	0.681	3e-62
83776783	180	chloroplast thioredoxin M-type [Arachis	0.983	0.994	0.675	5e-62
224082390	180	thioredoxin m [Populus trichocarpa] gi|1	0.978	0.988	0.677	3e-61
118488834	179	unknown [Populus trichocarpa x Populus d	0.978	0.994	0.681	7e-61
351721601	185	uncharacterized protein LOC100500292 [Gl	0.956	0.940	0.672	1e-60
388504900	181	unknown [Lotus japonicus]	0.961	0.966	0.648	5e-59
356551189	182	PREDICTED: LOW QUALITY PROTEIN: thioredo	0.989	0.989	0.622	1e-56

>gi|225457807|ref|XP_002266022.1| PREDICTED: thioredoxin M-type, chloroplastic [Vitis vinifera] gi|302142749|emb|CBI19952.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 153/182 (84%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MA++NCFQVS+V   RAGV+Q + PFS+ +K++LP   G+  S  SF+SS SSL      
Sbjct: 1   MALENCFQVSTVSCARAGVLQSHHPFSAKEKLNLPTCKGVKPSILSFSSSPSSLDYSFHR 60

Query: 61  RSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA 120
             R S I+CKAREAV+EVQVVTDSSW N+VI+SENPVLVEFWAPWCGPCRMIAP I+ELA
Sbjct: 61  ICRKSRIVCKAREAVDEVQVVTDSSWSNVVIASENPVLVEFWAPWCGPCRMIAPVIDELA 120

Query: 121 KEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           KEYAGK+ C K+NTDD PNIAT+YGIRSIPTVLFFKNGE+KES+IGAVPKSTL++T++KY
Sbjct: 121 KEYAGKIVCCKVNTDDCPNIATQYGIRSIPTVLFFKNGERKESVIGAVPKSTLTATIEKY 180

Query: 181 VE 182
           V+
Sbjct: 181 VD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558440|ref|XP_002520245.1| thioredoxin m(mitochondrial)-type, putative [Ricinus communis] gi|223540464|gb|EEF42031.1| thioredoxin m(mitochondrial)-type, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 155/186 (83%), Gaps = 8/186 (4%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPI-SNGLNKSNFSFTSSCSSLS--LP 57
           MAMKNCFQVS+V S RAGVVQC+     V KI+LP    GLN SN S +SS SS S   P
Sbjct: 1   MAMKNCFQVSTVSSARAGVVQCFH----VDKIYLPTYCKGLNISNLSLSSSASSSSPFFP 56

Query: 58  -LGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAI 116
            L SRS+NS I+CKAREA++EVQ VTDS WE+LVI+SENPVLVEFWAPWCGPCRMIAP I
Sbjct: 57  HLRSRSQNSRIVCKAREALDEVQAVTDSGWESLVIASENPVLVEFWAPWCGPCRMIAPVI 116

Query: 117 EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176
            ELAKEYAGK+ACFK+NTD+ PNIA KYGIRSIPTVLFF  GEKKES+IGAVPK+TLSST
Sbjct: 117 NELAKEYAGKIACFKVNTDECPNIANKYGIRSIPTVLFFNKGEKKESVIGAVPKTTLSST 176

Query: 177 LDKYVE 182
           ++KYV+
Sbjct: 177 IEKYVD 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727076|ref|NP_001237660.1| uncharacterized protein LOC100305596 [Glycine max] gi|255626027|gb|ACU13358.1| unknown [Glycine max]

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/188 (67%), Positives = 146/188 (77%), Gaps = 14/188 (7%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPF--SSVKKIHLPISNGLNKSNFSFTSSCSSLSLPL 58
           MA++NC +V++V +      QC+ PF  SS  K+  P   G  KS        S+LS P 
Sbjct: 1   MALENCLRVTTVGT---ATPQCFSPFFPSSRDKLVFPTHRGFKKS-----LQNSTLSYPY 52

Query: 59  ----GSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAP 114
               G+  R S  +C AREAVNEV+VVTDSSW NLVI+SE PVLVEFWAPWCGPCRMIAP
Sbjct: 53  LYSTGAAYRKSRFVCNAREAVNEVKVVTDSSWNNLVIASETPVLVEFWAPWCGPCRMIAP 112

Query: 115 AIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 174
           AI+ELAKEYAGK+ACFKLNTDDSPNIAT+YGIRSIPTVLFFKNGEKKESIIGAVPKSTLS
Sbjct: 113 AIDELAKEYAGKIACFKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 172

Query: 175 STLDKYVE 182
           +T++KYV+
Sbjct: 173 ATVEKYVD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066755|ref|XP_002302199.1| thioredoxin m [Populus trichocarpa] gi|222843925|gb|EEE81472.1| thioredoxin m [Populus trichocarpa]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 148/182 (81%), Gaps = 4/182 (2%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MAMKNCFQVSSV +TRAGV     PF+ V+K+ LP S GLN SN   +S  SS    L S
Sbjct: 1   MAMKNCFQVSSVSTTRAGVCH---PFAPVEKLQLPTSKGLNTSNLLLSSPSSSFPPSLRS 57

Query: 61  RSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA 120
           R + S I+CKAREAV+ VQV TD+SW + VI  + PVLVEFWAPWCGPC+MIAP IEELA
Sbjct: 58  RCQESRIVCKAREAVDAVQVATDASW-DAVIGGDTPVLVEFWAPWCGPCKMIAPVIEELA 116

Query: 121 KEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           +EYAGK+AC+K+NTDD P+IATKYGIRSIPTVLFFK GEKKES+IGAVPK+TLSS+++KY
Sbjct: 117 QEYAGKIACYKVNTDDCPSIATKYGIRSIPTVLFFKKGEKKESVIGAVPKTTLSSSIEKY 176

Query: 181 VE 182
           ++
Sbjct: 177 ID 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83776783|gb|ABC46707.1| chloroplast thioredoxin M-type [Arachis hypogaea]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 139/182 (76%), Gaps = 3/182 (1%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSL-PLG 59
           MA++NC ++S+   T    +QC  P SS KK+      G NKS    T S S+ SL    
Sbjct: 1   MALENCLRLSTTVGT--ARIQCLSPLSSWKKLVFSSYRGFNKSMLYSTVSNSNPSLYSTA 58

Query: 60  SRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
             SR S  +C ARE VNEVQVVTDSSW  LVI SE PVLVEFWAPWCGPCRMIAP I+EL
Sbjct: 59  GTSRKSSFVCNAREKVNEVQVVTDSSWNKLVIGSETPVLVEFWAPWCGPCRMIAPIIDEL 118

Query: 120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           AKEYAGK+AC+K+NTDD PNIAT+YGIRSIPTVLFFKNGEKKES+IGAVPKSTLS+TLDK
Sbjct: 119 AKEYAGKIACYKINTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSATLDK 178

Query: 180 YV 181
           YV
Sbjct: 179 YV 180

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082390|ref|XP_002306676.1| thioredoxin m [Populus trichocarpa] gi|118485971|gb|ABK94830.1| unknown [Populus trichocarpa] gi|118489710|gb|ABK96656.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856125|gb|EEE93672.1| thioredoxin m [Populus trichocarpa]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 124/183 (67%), Positives = 148/183 (80%), Gaps = 5/183 (2%)

Query: 1   MAMKNCFQVSSV-YSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLG 59
           MAMKNCFQVSSV  +TRAGV     PF+ V+K+ LP   G N SN S +S  SS    L 
Sbjct: 1   MAMKNCFQVSSVSTTTRAGVCH---PFAPVEKLQLPTCKGPNTSNLSLSSPSSSFPRSLR 57

Query: 60  SRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
           SR + S ++CKAREAV+ VQV TD+SW+  VI S+ PVLVEFWAPWCGPC+MIAP +EEL
Sbjct: 58  SRCQKSRVVCKAREAVDAVQVATDASWDT-VIGSDTPVLVEFWAPWCGPCKMIAPVVEEL 116

Query: 120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           AKEYAGK+AC+K+NTDD PNIATKYGIRSIPTVLFFK GEKKES+IGAVPK+TLS+++DK
Sbjct: 117 AKEYAGKIACYKVNTDDCPNIATKYGIRSIPTVLFFKKGEKKESVIGAVPKTTLSNSIDK 176

Query: 180 YVE 182
           Y++
Sbjct: 177 YID 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488834|gb|ABK96227.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 148/182 (81%), Gaps = 4/182 (2%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MAMKNCFQVSSV +TRAGV     PF+ V+K+ LP S GLN SN   +S  SS    L S
Sbjct: 1   MAMKNCFQVSSVSTTRAGVCH---PFAPVEKLQLPTSKGLNPSNLLLSSPSSSFPPSLRS 57

Query: 61  RSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA 120
           R + S I+CKAREAV+ VQV TD+SW + VI  + PVLVEFWAPWCGPC+MIAP IEELA
Sbjct: 58  RCQESRIVCKAREAVDAVQVATDASW-DAVIGGDTPVLVEFWAPWCGPCKMIAPVIEELA 116

Query: 121 KEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           +EYAGK+AC+K+NTDD P+IATKYGIRSIPTVLFFK GEKKES+IGAVPK+TLSS+++KY
Sbjct: 117 QEYAGKIACYKVNTDDCPSIATKYGIRSIPTVLFFKKGEKKESVIGAVPKTTLSSSIEKY 176

Query: 181 VE 182
           ++
Sbjct: 177 ID 178

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721601|ref|NP_001235935.1| uncharacterized protein LOC100500292 [Glycine max] gi|255629952|gb|ACU15328.1| unknown [Glycine max]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 140/180 (77%), Gaps = 6/180 (3%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPF--SSVKKIHLPISNGLNKSNFSFTSSCSSLSLPL 58
           M M+NC +V++V +      QC  PF  SS  K+  P   G  KS  + T SC SL    
Sbjct: 1   MGMENCLRVTTVGT---ATPQCLSPFFPSSRDKLVFPTHRGFKKSLQNSTLSCPSL-YST 56

Query: 59  GSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEE 118
           G+  R S  +C AREAVNEV+VVTDSSW NLVI+SE PVLVEFWAPWCGPCRMIAP I+E
Sbjct: 57  GAAYRRSRFVCNAREAVNEVKVVTDSSWNNLVIASETPVLVEFWAPWCGPCRMIAPVIDE 116

Query: 119 LAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           LAK+YAGK+AC+KLNTDDSPNIAT+YGIRSIPTVLFFKNGEKKESIIGAVPKSTLS+T++
Sbjct: 117 LAKDYAGKIACYKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVE 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504900|gb|AFK40516.1| unknown [Lotus japonicus]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 146/185 (78%), Gaps = 10/185 (5%)

Query: 1   MAMKNCFQVSSVYSTRAGVV---QCYQPFSSVKKIHLPISNGLNKS-NFSFTSSCSSLSL 56
           MAM++C QV++V     G V   Q   PFS+ +K+  P   G  K  + S TSS  SL  
Sbjct: 1   MAMESCLQVTTV-----GTVARPQSLHPFSAREKVVFPTYRGFKKCFSKSATSSNPSLYS 55

Query: 57  PLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAI 116
             G+  + S+I C AREAVNEV+VVT+SSW +LVI+SE PVLV+FWAPWCGPCRMIAP I
Sbjct: 56  AAGTNRKFSVI-CNAREAVNEVKVVTESSWNDLVIASEIPVLVDFWAPWCGPCRMIAPLI 114

Query: 117 EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176
           +ELAKEYAGK+AC+KLNTDDSPNIAT+YGIRSIPTVLFFKNGEKKES+IGAVPKSTL+++
Sbjct: 115 DELAKEYAGKIACYKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLTAS 174

Query: 177 LDKYV 181
           L+KY+
Sbjct: 175 LEKYI 179

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551189|ref|XP_003543960.1| PREDICTED: LOW QUALITY PROTEIN: thioredoxin M-type, chloroplastic-like [Glycine max]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/183 (62%), Positives = 136/183 (74%), Gaps = 3/183 (1%)

Query: 1   MAMKNCFQVSSVYSTRAGVVQCYQPFSSVKKIHLPISNGLNKSNFSFTSSCSSLSLPLGS 60
           MA++N  +V++V +      QC  PFS  + +         KS      S SSL     S
Sbjct: 1   MALENYVRVTTVGT--GATPQCLHPFSQRENLVFATYRVFKKSLSITALSNSSLYFAASS 58

Query: 61  RS-RNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
            + R S  +C AREAVNEV+VVTDSSW NLVI+SE PVLVEFWAPWCGPCRMI P I+EL
Sbjct: 59  TAKRKSHFVCNAREAVNEVRVVTDSSWSNLVIASETPVLVEFWAPWCGPCRMIXPVIDEL 118

Query: 120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           AKEY+GK+ACFKLNTDD PNIAT+YGIRSI TVLFFKNGEKKES++GAVPKSTLS+T++K
Sbjct: 119 AKEYSGKIACFKLNTDDYPNIATEYGIRSISTVLFFKNGEKKESVVGAVPKSTLSATVEK 178

Query: 180 YVE 182
           YV+
Sbjct: 179 YVD 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
UNIPROTKB|P07591	181	P07591 "Thioredoxin M-type, ch	0.978	0.983	0.510	1.8e-46
UNIPROTKB|Q9ZP20	172	TRXM "Thioredoxin M5, chloropl	0.620	0.656	0.707	4.5e-43
TAIR|locus:2128756	186	ATHM2 [Arabidopsis thaliana (t	0.631	0.618	0.556	3e-37
TAIR|locus:2090126	193	TRX-M4 "thioredoxin M-type 4"	0.631	0.595	0.567	1.5e-35
TAIR|locus:2020813	179	THM1 "thioredoxin M-type 1" [A	0.631	0.642	0.513	5.8e-34
UNIPROTKB|P52231	107	trxA "Thioredoxin" [Synechocys	0.554	0.943	0.584	8.5e-33
TIGR_CMR|DET_0661	107	DET_0661 "thioredoxin" [Dehalo	0.576	0.981	0.485	2.5e-26
TIGR_CMR|DET_0695	107	DET_0695 "thioredoxin" [Dehalo	0.576	0.981	0.485	2.5e-26
TAIR|locus:2053573	174	ATHM3 [Arabidopsis thaliana (t	0.543	0.568	0.515	6.6e-26
UNIPROTKB|P0AA25	109	trxA "thioredoxin 1" [Escheric	0.538	0.899	0.510	9.7e-25

UNIPROTKB|P07591 P07591 "Thioredoxin M-type, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 93/182 (51%), Positives = 124/182 (68%)

Query:     1 MAMKNCFQVSSVYSTRAGVVQCY-QPFSSVKKIHLPISNGLNKXXXXXXXXXXXXXXXXX 59
             MA++NC Q+S+  S     V+ +        K+++P   GL +                 
Sbjct:     1 MAIENCLQLSTSASVGTVAVKSHVHHLQPSSKVNVPTFRGLKRSFPALSSSVSSSSPRQF 60

Query:    60 XXXXXXXILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
                    ++CKA EAV EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+EL
Sbjct:    61 RYSS---VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDEL 117

Query:   120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
             AKEY+GK+A +KLNTD++P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++K
Sbjct:   118 AKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 177

Query:   180 YV 181
             Y+
Sbjct:   178 YL 179

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZP20 TRXM "Thioredoxin M5, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 80/113 (70%), Positives = 96/113 (84%)

Query:    69 CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVA 128
             C+    V+EV V  + +W+++V+ SE PVLVEFWAPWCGPCRMIAP I+ELAKEY GK+ 
Sbjct:    58 CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIK 117

Query:   129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             C K+NTDDSPNIAT YGIRSIPTVL FKNGEKKES+IGAVPK+TL++ +DKYV
Sbjct:   118 CCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IMP

TAIR|locus:2128756 ATHM2 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 64/115 (55%), Positives = 95/115 (82%)

Query:    67 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK 126
             ++C+A+E   ++QVV DS+W++LV+ +  PV+V+FWAPWCGPC+MI P + +LA+ Y GK
Sbjct:    71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGK 130

Query:   127 VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             +  +KLNTD+SPN   +YG+RSIPT++ F  GEKK++IIGAVPK+TL+S+LDK++
Sbjct:   131 IKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2090126 TRX-M4 "thioredoxin M-type 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 67/118 (56%), Positives = 93/118 (78%)

Query:    67 ILCKARE---AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY 123
             I C+A++   A  EV  ++DS W+  V+ S+ PVLVEFWAPWCGPCRMI P +++LAK++
Sbjct:    74 IACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDF 133

Query:   124 AGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             AGK   +K+NTD+SPN A +YGIRS+PTV+ FK GEKK+SIIGAVP+ TL  T+++++
Sbjct:   134 AGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2020813 THM1 "thioredoxin M-type 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 59/115 (51%), Positives = 92/115 (80%)

Query:    67 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK 126
             ++C+A++    + VV DS+W++LV+ ++ PV V+FWAPWCGPC+MI P + ELA++YAG+
Sbjct:    65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQ 124

Query:   127 VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
                +KLNTD+SP    +YG+RSIPT++ F NGEKK++IIGAV K TL+++++K++
Sbjct:   125 FKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P52231 trxA "Thioredoxin" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 59/101 (58%), Positives = 87/101 (86%)

Query:    81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
             V+D+S++  V+ SE PVLV+FWAPWCGPCRM+AP ++E++++Y GKV   KLNTD++PN 
Sbjct:     7 VSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNT 66

Query:   141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             A++YGIRSIPT++ FK G++ + ++GAVPK+TL+STL+KY+
Sbjct:    67 ASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_0661 DET_0661 "thioredoxin" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 51/105 (48%), Positives = 76/105 (72%)

Query:    78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
             V  +TD S+   V+ S+ PVLV+FWAPWCGPCRM+AP I++L+ +Y GK    KLN D++
Sbjct:     2 VMEITDQSFAAEVLKSDKPVLVDFWAPWCGPCRMVAPIIDKLSTKYEGKFKFCKLNVDEN 61

Query:   138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
                A +Y + SIPT+LFFK+G+  + ++GAVP+S LS  +D+ ++
Sbjct:    62 KTTAAQYRVMSIPTLLFFKSGQVADMVVGAVPESALSQKIDQLLQ 106

GO:0009055 "electron carrier activity" evidence=ISS

TIGR_CMR|DET_0695 DET_0695 "thioredoxin" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 51/105 (48%), Positives = 76/105 (72%)

Query:    78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
             V  +TD S+   V+ S+ PVLV+FWAPWCGPCRM+AP I++L+ +Y GK    KLN D++
Sbjct:     2 VMEITDQSFAAEVLKSDKPVLVDFWAPWCGPCRMVAPIIDKLSTKYEGKFKFCKLNVDEN 61

Query:   138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
                A +Y + SIPT+LFFK+G+  + ++GAVP+S LS  +D+ ++
Sbjct:    62 KTTAAQYRVMSIPTLLFFKSGQVADMVVGAVPESALSQKIDQLLQ 106

GO:0009055 "electron carrier activity" evidence=ISS

TAIR|locus:2053573 ATHM3 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 51/99 (51%), Positives = 72/99 (72%)

Query:    81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
             VT  SWE+ V+ SE PVLVEF+  WCGPCRM+   I+E+A +YAGK+ C+ LN D+   +
Sbjct:    72 VTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPV 131

Query:   141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
             A +Y I+++P VL FKNGEK+ESI+G +PK    S +++
Sbjct:   132 AEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIER 170

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA;IMP

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:0010647 "positive regulation of cell communication" evidence=IMP

GO:0048509 "regulation of meristem development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=TAS

UNIPROTKB|P0AA25 trxA "thioredoxin 1" [Escherichia coli K-12 (taxid:83333)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 50/98 (51%), Positives = 68/98 (69%)

Query:    81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
             +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct:     8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67

Query:   141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
             A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    68 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0022900 "electron transport chain" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA;IMP

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZP20	TRXM5_ORYSJ	No assigned EC number	0.5359	0.9340	0.9883	yes	no
Q9SEU8	TRXM2_ARATH	No assigned EC number	0.5067	0.8076	0.7903	yes	no
Q6H7E4	TRXM1_ORYSJ	No assigned EC number	0.5887	0.6703	0.7052	yes	no
P07591	TRXM_SPIOL	No assigned EC number	0.5567	0.9615	0.9668	N/A	no
P48384	TRXM_PEA	No assigned EC number	0.7826	0.6318	0.6686	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	3e-49
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	5e-45
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-39
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	4e-34
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	3e-33
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	3e-32
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	3e-24
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	7e-24
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	1e-21
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	3e-21
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	3e-20
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	3e-20
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	8e-20
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-19
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	3e-18
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	4e-17
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	8e-17
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	8e-17
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	9e-16
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-15
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	3e-15
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	3e-15
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	7e-14
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	6e-13
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	1e-12
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	4e-12
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	5e-12
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	2e-11
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	3e-11
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	3e-11
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	6e-11
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	2e-09
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	1e-08
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	1e-08
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	4e-08
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	6e-08
cd02948	102	cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase	8e-08
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	1e-07
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	1e-07
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	2e-07
TIGR00411	82	TIGR00411, redox_disulf_1, small redox-active disu	8e-07
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	1e-06
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	4e-06
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	6e-06
TIGR00385	173	TIGR00385, dsbE, periplasmic protein thiol:disulfi	1e-05
cd03010	127	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a	2e-05
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	3e-05
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	3e-05
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	2e-04
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	2e-04
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	2e-04
PHA02125	75	PHA02125, PHA02125, thioredoxin-like protein	6e-04
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	0.001

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score =  154 bits (391), Expect = 3e-49
 Identities = 58/101 (57%), Positives = 81/101 (80%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD++++  + SS+ PVLV+FWAPWCGPC+MIAP +EELAKEY GKV   KLN D++P+I
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KYGIRSIPT+L FKNG++ +  +GA+PK+ L   ++K +
Sbjct: 61  AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKNL 101

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  143 bits (364), Expect = 5e-45
 Identities = 46/104 (44%), Positives = 73/104 (70%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            V+V+TD +++  V  S+ PVLV+F+APWCGPC+ +AP  E+LA+EY   V   K++ D+
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE 60

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           +P++A++YG+R  PT+ FFKNG+K    +GA  K  L + + K+
Sbjct: 61  NPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score =  129 bits (327), Expect = 1e-39
 Identities = 49/95 (51%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 84  SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK 143
             +E L+ S++ PV+V+FWAPWCGPC+ IAP +EELA+EY  KV   K++ D++P +A +
Sbjct: 1   EEFEELIKSAK-PVVVDFWAPWCGPCKAIAPVLEELAEEY-PKVKFVKVDVDENPELAEE 58

Query: 144 YGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           YG+RSIPT LFFKNG++ + ++GA PK  L   L+
Sbjct: 59  YGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score =  116 bits (291), Expect = 4e-34
 Identities = 50/98 (51%), Positives = 68/98 (69%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 68  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105

Length = 109

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score =  114 bits (288), Expect = 3e-33
 Identities = 40/88 (45%), Positives = 61/88 (69%)

Query: 91  ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP 150
           +  + PV+++FWAPWCGPCR  AP  E++A E +GKV   K+NT+    ++ ++ IRSIP
Sbjct: 49  LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP 108

Query: 151 TVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           T++ FKNG+  + + GAVPK+   S L+
Sbjct: 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLN 136

Length = 139

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score =  116 bits (293), Expect = 3e-32
 Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 81  VTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           VT++++E  VI  S E PVLV+FWAPWCGPC+ + P +E+LA EY GK    K+N D  P
Sbjct: 28  VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP 87

Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            +A ++G++SIPTV  FK+G+  +   GA P+S L   LDK +
Sbjct: 88  MVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVL 130

Length = 304

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 90.7 bits (226), Expect = 3e-24
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDS 137
            +TD +++ LV  S   VLVEF+APWCG C+ +AP  E+LAKE    GKV   K++   +
Sbjct: 2   ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKK 161
            ++ ++YG+R  PT+  F NG K+
Sbjct: 61  NDLCSEYGVRGYPTIKLFPNGSKE 84

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 90.7 bits (224), Expect = 7e-24
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 82  TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-SPNI 140
            D +  +L      PVLV+FWAPWC PCR  AP +EELA+EY G V    +N DD +P++
Sbjct: 20  LDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDL 79

Query: 141 ATKYG--IRSIPTVLFFKNGEKKESIIG--AVPKSTLSSTLDKYV 181
           A ++G  +RSIPT+L FK+G++ + ++G   +PK  L   L + +
Sbjct: 80  AAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGELL 124

Length = 127

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 83.9 bits (208), Expect = 1e-21
 Identities = 31/85 (36%), Positives = 53/85 (62%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           +V  +TDS+++  V++S++  LVEF+APWCG C+ +AP  ++ AK   G V    ++ D 
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKK 161
             ++A +YG+R  PT+  F  G+  
Sbjct: 61  HQSLAQQYGVRGFPTIKVFGAGKNS 85

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 83.1 bits (206), Expect = 3e-21
 Identities = 35/90 (38%), Positives = 54/90 (60%)

Query: 89  LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRS 148
           L  S++ PV+V+FWAP   P + + P +E LA+EY G+    K+N D  P IA ++G+++
Sbjct: 7   LQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA 66

Query: 149 IPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           +PTV  F  G+  +   GA P+  L   LD
Sbjct: 67  LPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 80.8 bits (200), Expect = 3e-20
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTD 135
           V  +TDS+++ +V   +  VLVEF+APWCG C+ +AP  E+LA  +A    V   K++ D
Sbjct: 2   VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD 61

Query: 136 DS-PNIATKYGIRSIPTVLFFKNGEKK 161
           ++  ++A KYG+   PT+ FF  G  +
Sbjct: 62  EANKDLAKKYGVSGFPTLKFFPKGSTE 88

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 80.3 bits (198), Expect = 3e-20
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V +VT  +     +S    V+V+F+A WCGPC+ IAP  EE +KEY  K+   K++ D+ 
Sbjct: 2   VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDEL 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
             +A K  I S+PT   FKNG   ++++GA
Sbjct: 61  SEVAEKENITSMPTFKVFKNGSVVDTLLGA 90

Length = 98

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 79.2 bits (196), Expect = 8e-20
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 82  TDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           ++  +E L+ S  +  +++ FWAPW  PC+ +    EELAKE    V    +  ++ P I
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI 60

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           + K+ I ++PT +FF+NG   + + GA PK 
Sbjct: 61  SEKFEITAVPTFVFFRNGTIVDRVSGADPKE 91

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 78.1 bits (193), Expect = 3e-19
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSP 138
           +T S+++ +V+S++  VLVEF+APWCG C+ +AP  E+LAKE      +   K++     
Sbjct: 1   LTASNFDEIVLSNK-DVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           ++A+++G+   PT+ FF  G+K     G      +   +++  
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 75.3 bits (186), Expect = 3e-18
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 5/90 (5%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTD 135
           V+VV   +++ +V+ S+  VLVEF+APWCG C+ +AP  EELA++  G   V   K+  D
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKM--D 59

Query: 136 DSPN-IATKYGIRSIPTVLFFKNGEKKESI 164
            + N + +++ +   PT+LFF  G+K   I
Sbjct: 60  ATANDVPSEFVVDGFPTILFFPAGDKSNPI 89

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 51  CSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR 110
              + L                     V V+TDS+++   I+    VLV+F+APWCG C+
Sbjct: 12  LLLILLAFAVFGSAEEHFIS-----EHVTVLTDSTFDKF-ITENEIVLVKFYAPWCGHCK 65

Query: 111 MIAPAIEELAKEYA---GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
            +AP  ++ AK       ++    ++  +   +A ++G+R  PT+ FF  G    
Sbjct: 66  RLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVN 120

Length = 477

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 71.6 bits (176), Expect = 8e-17
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            V  +T   +  LV++ + P LV+F+APWCGPC+ + P + + A+   GKV    ++   
Sbjct: 2   SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKK 161
             ++  +  IR+ PT+  +     K
Sbjct: 62  YESLCQQANIRAYPTIRLYPGNASK 86

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 74.7 bits (183), Expect = 8e-17
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 72  REAVNEVQVVTDSSWENLVISSEN----PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV 127
            E  N + ++ D ++E L  +S      P  V+F+APWC  CR +APA E LAK   G+V
Sbjct: 26  AEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQV 85

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 159
               L+   + N+A ++ I+  PT+L F  G+
Sbjct: 86  NVADLDATRALNLAKRFAIKGYPTLLLFDKGK 117

Length = 224

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 68.7 bits (168), Expect = 9e-16
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152
           S+  +LV + +P CGPCR + P + ++  E+ G V   +++ D+   IA   GI   PTV
Sbjct: 12  SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTV 71

Query: 153 LFFKNGEKKESIIGAVPKS 171
            FFK+ E  + I G   KS
Sbjct: 72  QFFKDKELVKEISGVKMKS 90

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAP----AIEELAKEYAGKVACFKL 132
           +V V+T  ++ +  I S   VLVEF+APWCG C+ +AP    A +EL K+    +   K+
Sbjct: 2   DVLVLTKDNF-DDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKK-GPPIKLAKV 59

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKES 163
           +  +  ++A KYG+   PT+  F+NGE   S
Sbjct: 60  DATEEKDLAQKYGVSGYPTLKIFRNGEDSVS 90

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNT 134
           V+V+   +++ +V+     VLVEF+APWCG C+ +AP  EELA++Y      V   K+  
Sbjct: 348 VKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKM-- 405

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
           D + N    + +   PT+ F   G+K E +
Sbjct: 406 DATANDVPPFEVEGFPTIKFVPAGKKSEPV 435

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 67.6 bits (166), Expect = 3e-15
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 31/99 (31%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK----VACFKLNTDDSPN------------ 139
            VLV FWA WC PCR   P +E LAKEY       V    +N DD               
Sbjct: 21  VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVG---VNVDDDDPAAVKAFLKKYGI 77

Query: 140 -----------IATKYGIRSIPTVLFF-KNGEKKESIIG 166
                      +A  YG+R +PT     ++G  +   +G
Sbjct: 78  TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 63.8 bits (156), Expect = 7e-14
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 13/76 (17%)

Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEY--------AGKVACFKLNTDDSPNIATKY 144
           +E    V+F+APWCG C+ +AP  E+LAK++          KV C    T     + +++
Sbjct: 15  AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC----TQHR-ELCSEF 69

Query: 145 GIRSIPTVLFFKNGEK 160
            +R  PT+L FK+GEK
Sbjct: 70  QVRGYPTLLLFKDGEK 85

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 62.4 bits (152), Expect = 6e-13
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 91  ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---PNIATKYGIR 147
           +S+  P LVEF+A WC  C+ +AP + +L ++Y  +V    LN D+    P I  +Y + 
Sbjct: 17  LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEI-DRYRVD 75

Query: 148 SIPTVLFFKN-GEKKESIIGAVPKSTLSSTLD 178
            IP  +F    G ++   IG  PK  L+  LD
Sbjct: 76  GIPHFVFLDREGNEEGQSIGLQPKQVLAQNLD 107

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 21/89 (23%)

Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEY-----------AGKVACF---------KL 132
           S  PVLV FWA WC  CR  +P + +LA +Y            G VA F          +
Sbjct: 19  SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVI 78

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKK 161
           N D    I+ ++G+   P ++    G   
Sbjct: 79  N-DPDGVISARWGVSVTPAIVIVDPGGIV 106

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 59.4 bits (144), Expect = 4e-12
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 98  LVEFWAPWCGPCRMIAPAIEELAKE---YAGKVACFKLNTDDSPNIATKYGIRSIPTVLF 154
           LV+F+APWCG C+ + P   E+  E       V   KL+     +IA+++G+R  PT+  
Sbjct: 19  LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78

Query: 155 FKNG 158
            K  
Sbjct: 79  LKGD 82

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 59.3 bits (144), Expect = 5e-12
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN- 139
           +T  +++ +V ++    LVEF+APWCG C+ + P   + AKE  G V    ++ D+  N 
Sbjct: 5   LTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK 64

Query: 140 -IATKYGIRSIPTVLFFKNGEKKES 163
            +  KYG++  PT+  F+  +K   
Sbjct: 65  PLCGKYGVQGFPTLKVFRPPKKASK 89

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTD 135
           V+VV  +++E +V  S+  VL+E +APWCG C+ + P   EL ++Y     +   K+N  
Sbjct: 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEK 160
            +     ++   + PT+LF K GE+
Sbjct: 419 ANETPLEEFSWSAFPTILFVKAGER 443

Length = 477

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPC-RMI---APAIEELAKEYAGKVACFKL 132
           +V  +TD  +    +  E  VLV F+APWCG C +M      A  EL ++  G +A    
Sbjct: 1   DVVHLTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
              +   +  +Y ++  PT  +F+NG+  E
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENGKFVE 89

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 17/99 (17%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNI------------ 140
           PVLV F  P C  C+ +   +    ++ +          +N DDS  +            
Sbjct: 7   PVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKE 66

Query: 141 -ATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTL 177
            A KYG+R  PT++F   +G++   + G +P       L
Sbjct: 67  LARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 55.4 bits (133), Expect = 6e-11
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 98  LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI---ATKYGIRSIPTVLF 154
           LV F+APWC  C+ + P + ELA    G V    ++ D+ P +     +YG+  +PT++ 
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKG-VKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 155 FKNGEKK 161
           F  G   
Sbjct: 60  FGPGIGV 66

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA---KEYAGKVACFKLNT 134
           V  +TDS+W  LV+  E   ++EF+APWC  C+ + P  EE A    +    VA  K++ 
Sbjct: 3   VVELTDSNW-TLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVA--KVDV 57

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGE 159
              P ++ ++ + ++PT+   K+G 
Sbjct: 58  TQEPGLSGRFFVTALPTIYHAKDGV 82

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 98  LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNTDDSPNIATKYGI------RSIP 150
           LVEF+  W   C   AP   EL+ +Y      F K++    PN+A K+ +      + +P
Sbjct: 51  LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLP 110

Query: 151 TVLFFKNG 158
           T++ F+ G
Sbjct: 111 TIILFQGG 118

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY------AGKVACFKLNTDDSPNIATK 143
           ++ S   VLV F+A WC   +M+ P  EE A +       AGKV   K++ D   +IA +
Sbjct: 14  ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR 73

Query: 144 YGIRSIPTVLFFKNGE--KKE 162
           Y I   PT+  F+NG   K+E
Sbjct: 74  YRINKYPTLKLFRNGMMMKRE 94

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSI 149
                LV  +APWC  C+ +  + EELA++ AG   KVA F  + +       +  ++S 
Sbjct: 20  RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79

Query: 150 PTVLFFKNGEKK 161
           PT+LFF    ++
Sbjct: 80  PTILFFPKNSRQ 91

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 24/83 (28%), Positives = 37/83 (44%)

Query: 91  ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP 150
           ++S     V F++P C  C  +AP   E AKE  G +    +N  D   +    G+ S P
Sbjct: 15  VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYP 74

Query: 151 TVLFFKNGEKKESIIGAVPKSTL 173
           ++  F +G   E   G   K +L
Sbjct: 75  SLYVFPSGMNPEKYYGDRSKESL 97

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239246 cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V++     WE L+ S++   +V+ +  WCGPC+ +    +++  E    +  F     D+
Sbjct: 2   VEINNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
            +   +Y  +  PT LF+KNGE    I GA
Sbjct: 61  IDTLKRYRGKCEPTFLFYKNGELVAVIRGA 90

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which is also associated with microtubular structures. The other members of this group are hypothetical insect proteins containing a TRX domain and outer arm dynein light chains (14 and 16kDa) of Chlamydomonas reinhardtii. Using standard assays, the fusion proteins have shown no TRX enzymatic activity. Length = 102

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 98  LVEFWAPWCGPCRMIAPAIEELAK---EYAGKVACFKLNTDDSPNIAT--KYGIRSIPTV 152
           LVEF+A WCG CR  AP  ++LA+   ++   V    ++  D  N+A    +G+   PT+
Sbjct: 23  LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82

Query: 153 LFFK 156
            +F 
Sbjct: 83  RYFP 86

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
           V SSE  V+  F+ P    C+++   +E LAK++       K+N + +P +  K  I+ +
Sbjct: 19  VKSSER-VVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVL 76

Query: 150 PTVLFFKNGEKKESIIG 166
           PTV+ FKNG+  + I+G
Sbjct: 77  PTVILFKNGKTVDRIVG 93

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLN-TDDSPNIA---TKYGIRS 148
           PV V+F A WC  C++    +    E+       V   + + T + P I     ++G+  
Sbjct: 13  PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG 72

Query: 149 IPTVLFFKNGEKKESII 165
            PT LF+  G + E + 
Sbjct: 73  PPTYLFYGPGGEPEPLR 89

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|129505 TIGR00411, redox_disulf_1, small redox-active disulfide protein 1

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 101 FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160
           F +P C  C      +EE+AKE    V    +N  ++P  A +YGI ++P ++   NG  
Sbjct: 6   FTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-- 61

Query: 161 KESIIGAVPKSTLSSTLDK 179
               IGA  K  L   + K
Sbjct: 62  DVEFIGAPTKEELVEAIKK 80

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin [Unknown function, General]. Length = 82

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 94  ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIP 150
           + P LV  +APWC  C+ +  + EELA++ AG   KVA F+ + D       +  + S P
Sbjct: 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424

Query: 151 TVLFFKNGEKK 161
           T+L F     +
Sbjct: 425 TILLFPKNSSR 435

Length = 457

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 26/102 (25%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATK------------ 143
           V + FW  WC PC    P + EL  +Y  K V    +N D+   +A K            
Sbjct: 64  VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-TELAVKNFVNRYGLTFPV 122

Query: 144 -----------YGIRSIPTVLFF-KNGEKKESIIGAVPKSTL 173
                      YG+  +PT     K+G+  + I G + +  L
Sbjct: 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQL 164

Length = 173

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 27/92 (29%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPN-------------- 139
             VL+ FWA WC PCR   P ++EL ++    KV    ++ D                  
Sbjct: 2   KVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEWKKYLKKMPKDWL 61

Query: 140 -----------IATKYGIRSIPTVLFF-KNGE 159
                      +   YG+++IPT++   K+G 
Sbjct: 62  NVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|129481 TIGR00385, dsbE, periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKE 122
           PVL+  WA WC PCR   P + ELAK+
Sbjct: 65  PVLLNVWASWCPPCRAEHPYLNELAKQ 91

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins [Protein fate, Protein folding and stabilization]. Length = 173

>gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 91  ISSEN----PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY 144
           ++S +    P L+  WA WC PCR   P +  LA++  G+V  + +N  D+P  A  +
Sbjct: 18  LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ--GRVPIYGINYKDNPENALAW 73

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 76  NEVQVVTDSSWENLVISSE--NPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACF 130
           N V  ++    ENL+   E     LV  +APWC  C+ +  +  ELA++ AG   KVA F
Sbjct: 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKF 410

Query: 131 KLNTDDSPNIATKYGIRSIPTVLFF 155
           + + D       +  + S PT+LFF
Sbjct: 411 RADGDQKEFAKQELQLGSFPTILFF 435

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 94  ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---PNIATKYGIRSIP 150
           E+   V F+A WC       P    L+  +  ++    +  ++S   P++ ++YG+   P
Sbjct: 18  EDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAI--EESSIKPSLLSRYGVVGFP 74

Query: 151 TVLFF 155
           T+L F
Sbjct: 75  TILLF 79

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           ++ VT +S    V+       V F+ P    C+++   +EELA +Y  +    K+N + +
Sbjct: 15  LEEVTKASKGTRVV-------VHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA 66

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIG 166
             +     I+ +PT+L +KNGE  ++I+G
Sbjct: 67  -FLVNYLDIKVLPTLLVYKNGELIDNIVG 94

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLN-TDDSPNIAT---KYGIRS 148
           PV+++F+A WC  C+          ++ +     V   + + T + P I     + G+  
Sbjct: 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVL-LQADVTANDPAITALLKRLGVFG 534

Query: 149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
           +PT LFF   G + E + G +        L++
Sbjct: 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLER 566

Length = 569

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIE--ELAKEYAGKVACFKLN-TDDSPNIATKYGIRSIPTV 152
           P+LV+F A WC  C+ +          K  A K    +++ T   PN+      + +P V
Sbjct: 19  PLLVDFGADWCPTCQALDRDFLSDPRVKALAEKFVLLRVDVTTRDPNLLLDG--QGVPHV 76

Query: 153 LFF 155
           +F 
Sbjct: 77  VFL 79

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|133998 PHA02125, PHA02125, thioredoxin-like protein

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 101 FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160
           F A WC  C+M+ P +  +   Y        ++TD+   +  K+ IRS+PT++   N   
Sbjct: 5   FGAEWCANCKMVKPMLANVEYTY------VDVDTDEGVELTAKHHIRSLPTLV---NTST 55

Query: 161 KESIIGAVPKS 171
            +   G VP++
Sbjct: 56  LDRFTG-VPRN 65

Length = 75

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---IATK 143
           E L  +    V++EF     GP   I P + +L++     V    +N D++ +   +  +
Sbjct: 8   EALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRT-CNDVVFLLVNGDENDSTMELCRR 66

Query: 144 YGIRSIPTVLFFKNGEKKESIIGAVP 169
             I  +P  LF+K+GEK     G  P
Sbjct: 67  EKIIEVPHFLFYKDGEKIHEEEGIGP 92

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.97
PRK10996	139	thioredoxin 2; Provisional	99.96
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.95
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.93
PHA02278	103	thioredoxin-like protein	99.93
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.93
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.93
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.92
PRK09381	109	trxA thioredoxin; Provisional	99.92
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.92
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.91
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.91
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.91
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.91
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.91
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.91
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.9
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.9
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.9
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.89
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.89
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.89
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.89
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.89
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.89
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.88
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.88
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.88
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.87
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.87
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.87
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.87
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.87
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.86
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.86
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.86
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.85
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.85
PTZ00051	98	thioredoxin; Provisional	99.85
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.84
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.84
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.84
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.83
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.83
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.82
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.81
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.79
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.79
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.79
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.79
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.78
PTZ00102	477	disulphide isomerase; Provisional	99.78
PTZ00102	477	disulphide isomerase; Provisional	99.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.77
PLN02309	457	5'-adenylylsulfate reductase	99.77
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.76
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.76
PTZ00062	204	glutaredoxin; Provisional	99.75
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.73
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.72
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.69
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.69
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.66
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.65
PHA02125	75	thioredoxin-like protein	99.65
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.65
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.64
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.64
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.64
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.64
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.64
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.63
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.61
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.61
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.6
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.59
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.59
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.57
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.56
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.56
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.55
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.54
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.54
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.51
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.51
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.5
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.5
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.5
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.5
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.46
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.45
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.43
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.41
PTZ00056	199	glutathione peroxidase; Provisional	99.4
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.4
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.4
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.37
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.32
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.3
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.3
smart00594	122	UAS UAS domain.	99.29
PLN02412	167	probable glutathione peroxidase	99.29
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.28
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.27
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.26
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.26
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.2
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.15
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.14
PTZ00256	183	glutathione peroxidase; Provisional	99.13
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.12
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.11
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.09
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	99.07
KOG1672	211	consensus ATP binding protein [Posttranslational m	99.07
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.98
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.95
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.95
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.92
PF13728	215	TraF: F plasmid transfer operon protein	98.91
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.9
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.88
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.86
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.86
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.86
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.85
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.85
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.84
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.84
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.81
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.81
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.79
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.77
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.77
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.75
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.73
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.72
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.71
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.71
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.7
PRK13190	202	putative peroxiredoxin; Provisional	98.68
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.66
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.64
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.63
PRK11200	85	grxA glutaredoxin 1; Provisional	98.62
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	98.61
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.61
PRK15000	200	peroxidase; Provisional	98.58
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.58
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.54
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.54
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.52
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	98.51
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.49
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	98.49
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.48
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.42
PRK13599	215	putative peroxiredoxin; Provisional	98.41
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.4
PRK13189	222	peroxiredoxin; Provisional	98.38
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.35
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.34
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.33
PRK13191	215	putative peroxiredoxin; Provisional	98.33
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.32
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.31
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.25
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	98.23
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.22
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.22
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.21
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.2
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.2
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.18
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.17
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.15
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.13
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.09
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.09
PRK10329	81	glutaredoxin-like protein; Provisional	98.02
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.98
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.94
PHA03050	108	glutaredoxin; Provisional	97.91
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.88
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.85
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.8
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.78
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.77
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.67
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.54
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.48
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.44
PRK10638	83	glutaredoxin 3; Provisional	97.34
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.33
KOG3171	273	consensus Conserved phosducin-like protein [Signal	97.3
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.27
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.21
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.15
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.99
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	96.97
PRK10824	115	glutaredoxin-4; Provisional	96.96
COG1331	667	Highly conserved protein containing a thioredoxin	96.89
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	96.86
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	96.63
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	96.47
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.45
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.44
PTZ00062	204	glutaredoxin; Provisional	96.43
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.0
KOG2640	319	consensus Thioredoxin [Function unknown]	95.84
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	95.33
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	95.32
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	95.22
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	95.17
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.14
cd02978	72	KaiB_like KaiB-like family; composed of the circad	95.03
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	94.89
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	94.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.79
COG3019	149	Predicted metal-binding protein [General function	94.24
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.07
PHA03075	123	glutaredoxin-like protein; Provisional	93.76
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	93.38
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	92.54
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	92.38
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	92.27
PRK09301	103	circadian clock protein KaiB; Provisional	91.86
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	91.74
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	90.54
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	89.55
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	89.4
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	89.19
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	88.9
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	88.84
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	88.79
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	88.73
PRK13730	212	conjugal transfer pilus assembly protein TrbC; Pro	88.51
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	87.78
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	87.21
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	87.02
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	86.89
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	86.79
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	86.41
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	86.34
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	86.29
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	84.32
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	84.26
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	83.62
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	81.94
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	81.66
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	81.25
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	80.51
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	80.15

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-31  Score=197.53  Aligned_cols=108  Identities=48%  Similarity=0.937  Sum_probs=104.1

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+..++.++|++.+++++.||+|+|||+||+||+++.|.++++..+|.++++|+++|+|++.+++.+|+|+++||+++
T Consensus        42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+||++++++.|..+.+++.++|+++|+
T Consensus       122 fknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999874

>PRK10996 thioredoxin 2; Provisional

Probab=99.96  E-value=3.4e-28  Score=180.58  Aligned_cols=138  Identities=33%  Similarity=0.626  Sum_probs=126.7

Q ss_pred             eeeccCCCCcccccCcccccCCCCCCCCCcccchhhhhhhhhhccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhh
Q 030165           31 KIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR  110 (182)
Q Consensus        31 ~~~~p~~~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~  110 (182)
                      +..||.|...+|+|....     .-...|++       |......+.+.+++.++|++ +..++++++|+||++||++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~-~i~~~k~vvv~F~a~wC~~C~   68 (139)
T PRK10996          2 NTVCTSCQAINRLPDERI-----EDAAKCGR-------CGHDLFDGEVINATGETLDK-LLQDDLPVVIDFWAPWCGPCR   68 (139)
T ss_pred             eEECCCCCCcCCCCCccc-----cCCCcCCC-------CCCccCCCCCEEcCHHHHHH-HHhCCCeEEEEEECCCCHHHH
Confidence            568999999999988776     56667777       77778888899999999998 456789999999999999999


Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.|.|+++++++.+++.++++|.+++++++++|+|+++||+++|++|+.+.++.|..+.++|.+||++++
T Consensus        69 ~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996         69 NFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            99999999999999889999999999999999999999999999999999999999999999999999875

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.95  E-value=5.5e-27  Score=169.71  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=101.0

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChh--hh--hhhHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP--CR--MIAPAIEELAKEY--AGKVACFKLNTDDSPNIATKYGIRS  148 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~--C~--~~~p~l~~~a~~~--~~~v~~~~vd~d~~~~l~~~~~I~~  148 (182)
                      ...+..+|+++|++.+.+++.++|++||+.||++  |+  ++.|.+++++.++  .+++.|++||+|++++++++|||++
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            3568889999999999999999999999999988  99  9999999999998  7889999999999999999999999


Q ss_pred             ccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          149 IPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       149 iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +||+++|+||+.+. +.|..+++.|.+||+++++
T Consensus        88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~~  120 (120)
T cd03065          88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLIE  120 (120)
T ss_pred             ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence            99999999999887 9999999999999999874

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.93  E-value=7.6e-26  Score=161.88  Aligned_cols=88  Identities=18%  Similarity=0.397  Sum_probs=81.1

Q ss_pred             hhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165           83 DSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        83 ~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      .++|++.+.. +++++||+|||+||+||++|.|.|+++++++++.+.|++||+|++++++++|+|+++||+++|+||+.+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v   81 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM   81 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence            4677876653 688999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             EEEEcCCCH
Q 030165          162 ESIIGAVPK  170 (182)
Q Consensus       162 ~~~~G~~~~  170 (182)
                      .+..|..+.
T Consensus        82 ~~~~G~~~~   90 (114)
T cd02954          82 KIDLGTGNN   90 (114)
T ss_pred             EEEcCCCCC
Confidence            999987654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PHA02278 thioredoxin-like protein

Probab=99.93  E-value=2.3e-25  Score=157.36  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=84.9

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEEC
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++|.+.+ ..+++++|+|||+||+||+.+.|.|+++++++..++.|+++|+|.+    ++++++|+|+++||+++|+|
T Consensus         3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            346788755 6789999999999999999999999999988766688999999986    68999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHH
Q 030165          158 GEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~  176 (182)
                      |++++++.|..+.+++.++
T Consensus        82 G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEEEEeCCCCHHHHHhh
Confidence            9999999999999988775

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.93  E-value=2.2e-25  Score=159.92  Aligned_cols=102  Identities=12%  Similarity=0.172  Sum_probs=95.0

Q ss_pred             CccEEcChhhHHHHH--HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH-HHcCCCcccEE
Q 030165           76 NEVQVVTDSSWENLV--ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA-TKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~--~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~-~~~~I~~iPTl  152 (182)
                      ..+.++++++|++.+  ..++++++|+|||+||++|+++.|.|+++++.+.+.+.|++||++++.+++ ++|+|+++||+
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl   88 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI   88 (113)
T ss_pred             CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence            568999999999853  578999999999999999999999999999999988999999999999999 58999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      ++|++|+...++.|..+.++|..|+
T Consensus        89 ~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          89 HLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             EEEECCccceEEeCCCCHHHHHhhC
Confidence            9999999999999999999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.93  E-value=1e-24  Score=151.93  Aligned_cols=103  Identities=39%  Similarity=0.804  Sum_probs=98.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      |..+++++|++.+..+++++||+||++||++|+.+.|.|+++++++.+++.|+.+|++++.+++++|+|+++||+++|++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN   80 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence            46789999999777779999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHH
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      |+.+.++.|..+.+.|.+||++.
T Consensus        81 g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   81 GKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHcC
Confidence            99999999999999999999873

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.3e-25  Score=180.36  Aligned_cols=106  Identities=46%  Similarity=0.895  Sum_probs=100.5

Q ss_pred             CccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ..+.++|..+|+..++.  ..+||||+||+|||++|+.+.|.+++++.+|.|++.+++||+|+++.++.+|||++|||++
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~  102 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY  102 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence            34899999999998764  4569999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .|++|+.++.+.|..+.+++.+||++++
T Consensus       103 af~dGqpVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118         103 AFKDGQPVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             EeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999876

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.92  E-value=7.9e-25  Score=153.98  Aligned_cols=101  Identities=27%  Similarity=0.573  Sum_probs=94.4

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .+.+++.++|++.+..++++++|+||++||++|+.+.|.++++++++.+.+.|+++|++++++++++|+|+++||+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            36788999999988888889999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CC-eEEEEEEcCCC-HHHHHHHH
Q 030165          157 NG-EKKESIIGAVP-KSTLSSTL  177 (182)
Q Consensus       157 ~G-~~v~~~~G~~~-~~~l~~~l  177 (182)
                      +| +.+.++.|..+ .++|.+||
T Consensus        82 ~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCCCceEccCCCCCHHHHHhhC
Confidence            88 89999999987 99998875

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.92  E-value=3.1e-24  Score=152.26  Aligned_cols=108  Identities=46%  Similarity=0.914  Sum_probs=101.8

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.++++++++|.+.+.+.+++++|+||++||++|+.+.|.|+++++++.+++.++.+|++.++.++++|+|+++||+++
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            35688899999998777889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |++|+.+.+..|..+.+++.++|++.|+
T Consensus        82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         82 FKNGEVAATKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999998774

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.92  E-value=9.6e-25  Score=152.98  Aligned_cols=99  Identities=26%  Similarity=0.477  Sum_probs=92.9

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      ++.+++.++|++.+ ..+++++|+||++||++|+++.|.|+++++++++.+.|+++|+++++.++++|+|+++||+++|+
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   80 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP   80 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence            57889999999965 56699999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHH
Q 030165          157 NGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~  176 (182)
                      +|+.+.++.|..+.+.|.+|
T Consensus        81 ~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          81 SGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCCCcccCCCCCCHHHHHhh
Confidence            99999999999999988876

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.91  E-value=6.3e-24  Score=147.21  Aligned_cols=94  Identities=36%  Similarity=0.751  Sum_probs=87.8

Q ss_pred             hHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEE
Q 030165           85 SWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES  163 (182)
Q Consensus        85 ~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~  163 (182)
                      +|++.+.++ +++++|+||++||++|+++.|.++++++.+.+.+.++++|++.+.+++++|+|.++||+++|++|+.+.+
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~   81 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG   81 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence            577767555 7899999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHH
Q 030165          164 IIGAVPKSTLSSTLD  178 (182)
Q Consensus       164 ~~G~~~~~~l~~~l~  178 (182)
                      +.|..+.++|.+||+
T Consensus        82 ~~g~~~~~~l~~~l~   96 (96)
T cd02956          82 FQGAQPEEQLRQMLD   96 (96)
T ss_pred             ecCCCCHHHHHHHhC
Confidence            999999999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.91  E-value=1.5e-23  Score=147.98  Aligned_cols=96  Identities=22%  Similarity=0.353  Sum_probs=84.7

Q ss_pred             ChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEEC
Q 030165           82 TDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP---NIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~---~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++|++.+.+. ++++||+|||+||++|+++.|.|+++++++ +++.|+++|.|++.   +++++|+|+++||+++|+|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            467888877644 899999999999999999999999999999 56999999999875   7999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHH
Q 030165          158 GEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      |+++.++.|. .+++|.+.+.+
T Consensus        81 G~~v~~~~G~-~~~~l~~~~~~  101 (103)
T cd02985          81 GEKIHEEEGI-GPDELIGDVLY  101 (103)
T ss_pred             CeEEEEEeCC-CHHHHHHHHHh
Confidence            9999999995 55667776654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.91  E-value=7.9e-24  Score=151.31  Aligned_cols=102  Identities=24%  Similarity=0.375  Sum_probs=93.1

Q ss_pred             EEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           79 QVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        79 ~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..++.++|.+.+..  .+++++|+||++||++|+++.|.++++++++.+ ++.++++|++.++.++++|+|+++||+++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            34678889876653  689999999999999999999999999999975 499999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++|+.+.+..|..+.+.|.++|+++
T Consensus        87 ~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          87 INGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             ECCEEEEEecCCCCHHHHHHHHhcC
Confidence            9999999999999999999999874

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.91  E-value=1.9e-23  Score=147.09  Aligned_cols=97  Identities=26%  Similarity=0.576  Sum_probs=88.3

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCe
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE  159 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~  159 (182)
                      -+.++|+. ++.++++++|+|||+||++|+.+.|.|+++++++++ .+.|+.+|.| +++++++|+|+++||+++|++|+
T Consensus         5 ~~~~~~~~-~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           5 NNQEEWEE-LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             cCHHHHHH-HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence            47788888 456789999999999999999999999999999975 4789999999 78899999999999999999999


Q ss_pred             EEEEEEcCCCHHHHHHHHHHH
Q 030165          160 KKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       160 ~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      .+.+..|. +.+.+.++|+++
T Consensus        83 ~~~~~~G~-~~~~~~~~i~~~  102 (102)
T cd02948          83 LVAVIRGA-NAPLLNKTITEL  102 (102)
T ss_pred             EEEEEecC-ChHHHHHHHhhC
Confidence            99999995 889999999864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.2e-24  Score=149.72  Aligned_cols=89  Identities=34%  Similarity=0.802  Sum_probs=81.5

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP  169 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~  169 (182)
                      ....+++++|+|||+|||||+++.|.|++++.+|++ +.|+++|+|+.++++++|+|+++||+++|++|++++++.|+..
T Consensus        17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~   95 (106)
T KOG0907|consen   17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK   95 (106)
T ss_pred             hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence            334579999999999999999999999999999998 9999999999999999999999999999999999999999754


Q ss_pred             HHHHHHHHHHH
Q 030165          170 KSTLSSTLDKY  180 (182)
Q Consensus       170 ~~~l~~~l~~~  180 (182)
                      . ++.+.|+++
T Consensus        96 ~-~l~~~i~~~  105 (106)
T KOG0907|consen   96 A-ELEKKIAKH  105 (106)
T ss_pred             H-HHHHHHHhc
Confidence            4 788877654

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.91  E-value=3.2e-23  Score=153.62  Aligned_cols=101  Identities=16%  Similarity=0.302  Sum_probs=91.1

Q ss_pred             cChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE-EEECC
Q 030165           81 VTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL-FFKNG  158 (182)
Q Consensus        81 l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~-~f~~G  158 (182)
                      -+.++|++.+. ..+++|||+|||+||+||+++.|.|+++++++++.+.|++||+|+++++++.|+|++.||++ +|++|
T Consensus         9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410          9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence            35788888776 46889999999999999999999999999999988999999999999999999999887666 88999


Q ss_pred             e-EEEEEEc--------CCCHHHHHHHHHHHh
Q 030165          159 E-KKESIIG--------AVPKSTLSSTLDKYV  181 (182)
Q Consensus       159 ~-~v~~~~G--------~~~~~~l~~~l~~~l  181 (182)
                      + .+.+..|        ..+.++|.+.++.++
T Consensus        89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             eEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence            9 8899999        678999999988765

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.90  E-value=3.2e-23  Score=147.51  Aligned_cols=98  Identities=15%  Similarity=0.285  Sum_probs=91.3

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ....+|.++|++.+ +.+.+++|+||++|  |++|+.+.|.|++++++|++++.|+++|+|++++++.+|+|+++||+++
T Consensus        11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~   89 (111)
T cd02965          11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF   89 (111)
T ss_pred             CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence            35678999999854 88899999999997  9999999999999999999999999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSS  175 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~  175 (182)
                      |+||+.+++..|..+.+++.+
T Consensus        90 fkdGk~v~~~~G~~~~~e~~~  110 (111)
T cd02965          90 FRDGRYVGVLAGIRDWDEYVA  110 (111)
T ss_pred             EECCEEEEEEeCccCHHHHhh
Confidence            999999999999999888753

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.90  E-value=4.3e-23  Score=146.34  Aligned_cols=100  Identities=32%  Similarity=0.563  Sum_probs=89.8

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc------CceEEEEEeCCCChHHHHHcCCCccc
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA------GKVACFKLNTDDSPNIATKYGIRSIP  150 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~------~~v~~~~vd~d~~~~l~~~~~I~~iP  150 (182)
                      .+.++++++|++. ...+++++|+|||+||++|+++.|.++++++.+.      +++.++++|+|++++++++|+|+++|
T Consensus         2 ~v~~l~~~~f~~~-i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDI-LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHH-HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            4788999999985 4778899999999999999999999999998763      24899999999999999999999999


Q ss_pred             EEEEEECCeE-EEEEEcCCCHHHHHHHH
Q 030165          151 TVLFFKNGEK-KESIIGAVPKSTLSSTL  177 (182)
Q Consensus       151 Tl~~f~~G~~-v~~~~G~~~~~~l~~~l  177 (182)
                      |+++|++|++ ..++.|..+.++|.+||
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999999984 47888999999998885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.90  E-value=6.1e-23  Score=145.16  Aligned_cols=101  Identities=28%  Similarity=0.565  Sum_probs=93.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++++++|++.+...+++++|+||++||++|+.+.|.|+++++++.+.+.++.+|+++  +.+++++|+|+++||+++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            67899999999888889999999999999999999999999999999889999999998  8899999999999999999


Q ss_pred             ECCe-----EEEEEEcCCCHHHHHHHHH
Q 030165          156 KNGE-----KKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       156 ~~G~-----~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++|+     ....+.|..+.++|.+||.
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHhC
Confidence            9886     4567889999999999973

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.89  E-value=1.4e-22  Score=141.41  Aligned_cols=98  Identities=30%  Similarity=0.656  Sum_probs=90.0

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +.++++++|++.+..  ++++|+||++||++|+.+.|.++++++++.+   ++.++++|++.+..++++|+|.++||+++
T Consensus         2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            578899999996643  3599999999999999999999999999976   69999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      |++|+++.++.|..+.++|.+||
T Consensus        80 ~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCeeeEeeCCCCHHHHHhhC
Confidence            99999999999999999988875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.89  E-value=2e-22  Score=141.03  Aligned_cols=99  Identities=26%  Similarity=0.555  Sum_probs=88.6

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .+.+++.++|++.+ . + .++|+|||+||++|+++.|.|+++++.+.+ ++.++++|+++++.++++|+|+++||+++|
T Consensus         2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            47889999999854 3 3 379999999999999999999999998764 599999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      ++|+. .++.|..+.++|.+||++
T Consensus        79 ~~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          79 KDGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCCCE-EEecCCCCHHHHHHHHhC
Confidence            99974 788999999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR01068 thioredoxin thioredoxin

Probab=99.89  E-value=4.6e-22  Score=137.88  Aligned_cols=101  Identities=57%  Similarity=1.123  Sum_probs=94.1

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ++.++|.+.+...+++++|+||++||++|+.+.+.|+++++++++++.|+.+|++++..++++|+|.++||+++|++|+.
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~   80 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE   80 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence            46778888777777899999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHh
Q 030165          161 KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +.++.|..+.+++.++|++.|
T Consensus        81 ~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        81 VDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             eeeecCCCCHHHHHHHHHhhC
Confidence            999999999999999998864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.89  E-value=3.2e-22  Score=139.83  Aligned_cols=100  Identities=33%  Similarity=0.637  Sum_probs=92.7

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++++++|++.+...+++++|+||++||++|+++.|.|+++++++.+++.++.+|++++.+++++|+|+++||+++|++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence            67889999999777778889999999999999999999999999998889999999999999999999999999999998


Q ss_pred             C-eEEEEEEcCCCHHHHHHHH
Q 030165          158 G-EKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       158 G-~~v~~~~G~~~~~~l~~~l  177 (182)
                      | +....+.|..+.++|.+|+
T Consensus        82 ~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          82 GKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCcceeecCCCCCHHHHHHHh
Confidence            8 5566888999999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=158.87  Aligned_cols=107  Identities=32%  Similarity=0.587  Sum_probs=98.6

Q ss_pred             cCccEEcChhhHHHHHHcC----CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc
Q 030165           75 VNEVQVVTDSSWENLVISS----ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP  150 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~----~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iP  150 (182)
                      ...+.++++++|++.+..+    +++++|+|||+||++|+.+.|.++++++++.+.+.++++|++++++++++|+|+++|
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            3568999999999976543    589999999999999999999999999999988999999999999999999999999


Q ss_pred             EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++|++|+.+....|..+.++|.+|+++.+
T Consensus       109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             EEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            9999999999888889999999999998764

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.89  E-value=5.4e-22  Score=142.38  Aligned_cols=91  Identities=29%  Similarity=0.524  Sum_probs=82.3

Q ss_pred             CccEEcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           76 NEVQVVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        76 ~~v~~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +.+.++++ ++|.+.+ .++++++|+||++||++|+.+.|.++++++++++ +.|++||.+++++++++|+|+++||+++
T Consensus         4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~   81 (113)
T cd02989           4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVIL   81 (113)
T ss_pred             CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence            45677777 8888854 5678999999999999999999999999999875 8999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCC
Q 030165          155 FKNGEKKESIIGAV  168 (182)
Q Consensus       155 f~~G~~v~~~~G~~  168 (182)
                      |++|++++++.|..
T Consensus        82 fk~G~~v~~~~g~~   95 (113)
T cd02989          82 FKNGKTVDRIVGFE   95 (113)
T ss_pred             EECCEEEEEEECcc
Confidence            99999999988754

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.89  E-value=1.4e-22  Score=142.40  Aligned_cols=84  Identities=20%  Similarity=0.472  Sum_probs=79.0

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCH
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~  170 (182)
                      ..+++++|+|||+||++|+++.|.|+++++++++ +.++++|.+ +++.++++|+|+++||+++|++| .+.++.|..+.
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~   93 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL   93 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence            5789999999999999999999999999999975 889999999 78999999999999999999999 88999999999


Q ss_pred             HHHHHHH
Q 030165          171 STLSSTL  177 (182)
Q Consensus       171 ~~l~~~l  177 (182)
                      ++|.+||
T Consensus        94 ~~l~~f~  100 (100)
T cd02999          94 DSLAAFY  100 (100)
T ss_pred             HHHHhhC
Confidence            9999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.88  E-value=7.2e-23  Score=146.68  Aligned_cols=91  Identities=27%  Similarity=0.533  Sum_probs=83.7

Q ss_pred             CccEEcChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.+.+++.++|.+.+...  +++++|+||++||++|+.+.|.|+++++++++ +.|+++|++++ +++++|+|+++||++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            567889999999977665  48999999999999999999999999999975 89999999999 999999999999999


Q ss_pred             EEECCeEEEEEEcCC
Q 030165          154 FFKNGEKKESIIGAV  168 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~  168 (182)
                      +|++|+.++++.|..
T Consensus        82 ~f~~G~~v~~~~G~~   96 (113)
T cd02957          82 VYKNGELIDNIVGFE   96 (113)
T ss_pred             EEECCEEEEEEecHH
Confidence            999999999999854

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.88  E-value=8e-22  Score=146.91  Aligned_cols=99  Identities=32%  Similarity=0.655  Sum_probs=88.9

Q ss_pred             hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE-ECCe
Q 030165           83 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFF-KNGE  159 (182)
Q Consensus        83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f-~~G~  159 (182)
                      ..+|+. ++..++++||+|||+||++|+.+.|.++++++++.+++.|+.+|+|..  .+++++|+|+++||+++| ++|+
T Consensus        10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~   88 (142)
T cd02950          10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN   88 (142)
T ss_pred             cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence            345665 557889999999999999999999999999999988889999998865  578999999999999999 4899


Q ss_pred             EEEEEEcCCCHHHHHHHHHHHhC
Q 030165          160 KKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       160 ~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++.++.|..+.++|.++|+++++
T Consensus        89 ~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHc
Confidence            99999999999999999998874

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.88  E-value=1.1e-21  Score=137.31  Aligned_cols=99  Identities=27%  Similarity=0.575  Sum_probs=90.3

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCC--ChHHHHHcCCCcccEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDD--SPNIATKYGIRSIPTVL  153 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~  153 (182)
                      +.++++++|++.+ +.+++++|+||++||++|+.+.|.++++++.+.  +.+.++++|+++  +..++++|+|+++||++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5778999999855 556699999999999999999999999999987  568899999998  89999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHH
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      +|++|+.+.++.|..+.+++.+||
T Consensus        81 ~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeEEeCCCCCHHHHHhhC
Confidence            999999999999999999998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.87  E-value=1.8e-21  Score=138.62  Aligned_cols=98  Identities=15%  Similarity=0.302  Sum_probs=84.0

Q ss_pred             hhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165           83 DSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        83 ~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      .++|++.+.. .+++|||+|||+||++|+.+.|.|+++++++++.+.|++||+|+.++++++|+|++.||+++|+||+-+
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            3567776664 599999999999999999999999999999986699999999999999999999999999999999977


Q ss_pred             EEEEcC----------CCHHHHHHHHHHH
Q 030165          162 ESIIGA----------VPKSTLSSTLDKY  180 (182)
Q Consensus       162 ~~~~G~----------~~~~~l~~~l~~~  180 (182)
                      .-..|.          .++++|.+.++-+
T Consensus        82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            654442          2467787777643

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.87  E-value=1.6e-21  Score=135.61  Aligned_cols=100  Identities=33%  Similarity=0.695  Sum_probs=91.8

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEEECC
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG  158 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G  158 (182)
                      +++++|++.+ ..+++++|+||++||++|+.+.+.++++++.+.+  ++.++.+|++++.+++++|+|+++|++++|++|
T Consensus         1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            4678899865 4889999999999999999999999999999987  699999999999999999999999999999988


Q ss_pred             eEEEEEEcCCCHHHHHHHHHHHh
Q 030165          159 EKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       159 ~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +...++.|..+.++|..||++.+
T Consensus        80 ~~~~~~~g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        80 KKPVDYEGGRDLEAIVEFVNEKS  102 (102)
T ss_pred             CcceeecCCCCHHHHHHHHHhcC
Confidence            77888999999999999999764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.87  E-value=3.5e-21  Score=134.10  Aligned_cols=93  Identities=32%  Similarity=0.587  Sum_probs=87.4

Q ss_pred             HHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEE
Q 030165           86 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESII  165 (182)
Q Consensus        86 ~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~  165 (182)
                      ++..+.+.+++++|+||++||+.|+.+.|.++++++++.+++.++++|.+++++++++|+|.++||+++|++|+++.++.
T Consensus         5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~   84 (97)
T cd02949           5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS   84 (97)
T ss_pred             HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence            45666778999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHH
Q 030165          166 GAVPKSTLSSTLD  178 (182)
Q Consensus       166 G~~~~~~l~~~l~  178 (182)
                      |..+.++|.++|+
T Consensus        85 g~~~~~~~~~~l~   97 (97)
T cd02949          85 GVKMKSEYREFIE   97 (97)
T ss_pred             CCccHHHHHHhhC
Confidence            9999999998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.87  E-value=3.4e-21  Score=133.45  Aligned_cols=95  Identities=32%  Similarity=0.705  Sum_probs=84.3

Q ss_pred             ChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           82 TDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +.++|++.+... +++++|+||++||++|+.+.+.|+++++++..++.++++|.+++++++++|+|.++||+++|++|++
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~   80 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI   80 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence            356788866554 6999999999999999999999999999976689999999999999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHH
Q 030165          161 KESIIGAVPKSTLSSTL  177 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l  177 (182)
                      +.+..|. ..++|.++|
T Consensus        81 ~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          81 VDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEEeCC-CHHHHHHhh
Confidence            9999995 566676665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.87  E-value=3.5e-21  Score=144.83  Aligned_cols=91  Identities=24%  Similarity=0.480  Sum_probs=83.8

Q ss_pred             CccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCc-----
Q 030165           76 NEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRS-----  148 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~-----  148 (182)
                      ..+.+++.++|++.+.. .+++++|+||++||++|+++.|.|+++++++++ ++.|++||+|++++++++|+|.+     
T Consensus        28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~  107 (152)
T cd02962          28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK  107 (152)
T ss_pred             CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence            56888999999987654 457999999999999999999999999999974 59999999999999999999998     


Q ss_pred             -ccEEEEEECCeEEEEEEc
Q 030165          149 -IPTVLFFKNGEKKESIIG  166 (182)
Q Consensus       149 -iPTl~~f~~G~~v~~~~G  166 (182)
                       +||+++|++|+++.++.|
T Consensus       108 ~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         108 QLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CCCEEEEEECCEEEEEEec
Confidence             999999999999999997

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.86  E-value=2.7e-21  Score=135.11  Aligned_cols=99  Identities=33%  Similarity=0.711  Sum_probs=90.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++++++|++.+...+++++|+||++||++|+.+.|.++++++.+.+  ++.++++|++++ +++..+++.++||+++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            678999999998878889999999999999999999999999999876  599999999987 68889999999999999


Q ss_pred             ECCe--EEEEEEcCCCHHHHHHHH
Q 030165          156 KNGE--KKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       156 ~~G~--~v~~~~G~~~~~~l~~~l  177 (182)
                      ++|+  ...++.|..+.++|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            9887  667889999999998885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.86  E-value=3e-21  Score=134.93  Aligned_cols=100  Identities=36%  Similarity=0.687  Sum_probs=90.7

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCC-ChHHHHHcCCCcccEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDD-SPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~-~~~l~~~~~I~~iPTl~~  154 (182)
                      +.++++++|++.+...+++++|+||++||++|+.+.|.++++++++.  +++.++.+|++. +..++++|+|+++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            57789999999776677899999999999999999999999999987  469999999999 999999999999999999


Q ss_pred             EECC-eEEEEEEcCCCHHHHHHHH
Q 030165          155 FKNG-EKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       155 f~~G-~~v~~~~G~~~~~~l~~~l  177 (182)
                      |++| +....+.|..+.++|.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            9866 6777888999999998875

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.86  E-value=7.5e-21  Score=146.29  Aligned_cols=103  Identities=18%  Similarity=0.341  Sum_probs=89.9

Q ss_pred             cCccEEcCh-hhHHHHHHcCC--CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTD-SSWENLVISSE--NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~-~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      -+.+.+++. ++|.+.+...+  .+|||+||++||++|+.+.|.|++++++|+ .++|++||+++. .++.+|+|+++||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence            477888988 99999776544  499999999999999999999999999997 499999999988 8999999999999


Q ss_pred             EEEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165          152 VLFFKNGEKKESIIGAV-------PKSTLSSTLDK  179 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~-------~~~~l~~~l~~  179 (182)
                      +++|++|+.+.++.|..       +.++|+.+|.+
T Consensus       139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            99999999999998753       45666666654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.85  E-value=3.1e-21  Score=135.81  Aligned_cols=94  Identities=18%  Similarity=0.438  Sum_probs=84.1

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~f~  156 (182)
                      +.|.+ ++.++++++|+||++||++|+++.+.+   +++++.+.+++.++.+|.++    ..+++++|+|.++||+++|+
T Consensus         2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~   80 (104)
T cd02953           2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG   80 (104)
T ss_pred             HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            45666 557889999999999999999999988   68888888789999999987    56899999999999999997


Q ss_pred             --CCeEEEEEEcCCCHHHHHHHHH
Q 030165          157 --NGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       157 --~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                        +|+.+.++.|..+.++|.++|+
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHhC
Confidence              8999999999999999998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.85  E-value=1.8e-20  Score=134.45  Aligned_cols=91  Identities=22%  Similarity=0.362  Sum_probs=82.5

Q ss_pred             HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEE--EEEcCC
Q 030165           91 ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE--SIIGAV  168 (182)
Q Consensus        91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~--~~~G~~  168 (182)
                      +..+..++|+||++||++|+.+.|.++++++.+ +++.++++|.|++++++++|+|+++||+++|++|+...  ++.|..
T Consensus        19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~   97 (113)
T cd02975          19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP   97 (113)
T ss_pred             hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence            356778999999999999999999999999887 56999999999999999999999999999999876555  788999


Q ss_pred             CHHHHHHHHHHHhC
Q 030165          169 PKSTLSSTLDKYVE  182 (182)
Q Consensus       169 ~~~~l~~~l~~~l~  182 (182)
                      +..+|.++|+.++.
T Consensus        98 ~~~el~~~i~~i~~  111 (113)
T cd02975          98 AGYEFASLIEDIVR  111 (113)
T ss_pred             chHHHHHHHHHHHh
Confidence            99999999998863

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PTZ00051 thioredoxin; Provisional

Probab=99.85  E-value=3.3e-20  Score=128.80  Aligned_cols=93  Identities=39%  Similarity=0.764  Sum_probs=82.0

Q ss_pred             EEcC-hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           79 QVVT-DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        79 ~~l~-~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      ++++ .++|.+ +...+++++|+||++||++|+.+.+.|+++++++.+ +.|+.+|.+++.+++++|+|+++||+++|++
T Consensus         3 ~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   80 (98)
T PTZ00051          3 HIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN   80 (98)
T ss_pred             EEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence            4444 456666 567889999999999999999999999999998865 8999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHH
Q 030165          158 GEKKESIIGAVPKSTLS  174 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~  174 (182)
                      |++++++.|. ..++|.
T Consensus        81 g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         81 GSVVDTLLGA-NDEALK   96 (98)
T ss_pred             CeEEEEEeCC-CHHHhh
Confidence            9999999995 556554

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.84  E-value=2.6e-20  Score=132.47  Aligned_cols=101  Identities=28%  Similarity=0.488  Sum_probs=87.4

Q ss_pred             ccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-ChHHHH-HcCCCcccE
Q 030165           77 EVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-SPNIAT-KYGIRSIPT  151 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-~~~l~~-~~~I~~iPT  151 (182)
                      .+.+++.++|+.++.  .++++++|.||++||++|+++.|.++++++.+.+ ++.++.+|+|. +..++. .|+|+++||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            478899999999774  4689999999999999999999999999999986 49999999998 577876 499999999


Q ss_pred             EEEEECC-eEEEEEEcC-CCHHHHHHHH
Q 030165          152 VLFFKNG-EKKESIIGA-VPKSTLSSTL  177 (182)
Q Consensus       152 l~~f~~G-~~v~~~~G~-~~~~~l~~~l  177 (182)
                      +++|++| +....+.|. .+.+.|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999765 567778885 6888888875

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.84  E-value=3.5e-20  Score=130.55  Aligned_cols=94  Identities=29%  Similarity=0.581  Sum_probs=83.0

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ++|++ + ..+++++|+||++||++|+++.|.|+++++++.+   .+.++.+|++..++++++|+|+++||+++|++|. 
T Consensus         7 ~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-   83 (104)
T cd03000           7 DSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-   83 (104)
T ss_pred             hhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence            56776 3 4467999999999999999999999999999843   4899999999999999999999999999997774 


Q ss_pred             EEEEEcCCCHHHHHHHHHHH
Q 030165          161 KESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ..++.|..+.++|.+|+++.
T Consensus        84 ~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          84 AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ceeecCCCCHHHHHHHHHhh
Confidence            56788999999999999874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.84  E-value=6.1e-20  Score=133.47  Aligned_cols=100  Identities=13%  Similarity=0.275  Sum_probs=83.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----------HHHHHc
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----------NIATKY  144 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----------~l~~~~  144 (182)
                      .....++.+++.+ ...+++.++|+||++||++|+++.|.|++++++.  ++.++++|+|.+.           ++.++|
T Consensus         6 ~~~~~it~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         6 KGLEVTTVVRALE-ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ccceecCHHHHHH-HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            3467788899998 4467888999999999999999999999999983  4778888888543           456776


Q ss_pred             CC----CcccEEEEEECCeEEEEEEc-CCCHHHHHHHHH
Q 030165          145 GI----RSIPTVLFFKNGEKKESIIG-AVPKSTLSSTLD  178 (182)
Q Consensus       145 ~I----~~iPTl~~f~~G~~v~~~~G-~~~~~~l~~~l~  178 (182)
                      ++    .++||+++|++|+++.+..| ..+.++|.+++.
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            65    45999999999999999999 556999988864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.2e-20  Score=147.65  Aligned_cols=102  Identities=38%  Similarity=0.752  Sum_probs=90.5

Q ss_pred             cEEc-ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      |+.+ ++.+|+..+. ...+.|+|+|+|+|||||++++|+|++++.+|++ ..|++||+|+++..+..+||.+.||+++|
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff   81 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFF   81 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence            3444 5677877554 4568999999999999999999999999999986 89999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .||..++++.|+ ++..|++.+.+++
T Consensus        82 ~ng~kid~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   82 RNGVKIDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence            999999999995 7788999988875

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.83  E-value=3.5e-20  Score=127.56  Aligned_cols=97  Identities=37%  Similarity=0.744  Sum_probs=87.5

Q ss_pred             EcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           80 VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +++.++|.+.+ .++++++|+||++||++|+.+.+.++++++.+  .+.+.++.+|++++..++++|+|+++||+++|++
T Consensus         2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            57888999844 44559999999999999999999999999999  5779999999999999999999999999999987


Q ss_pred             C-eEEEEEEcCCCHHHHHHHH
Q 030165          158 G-EKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       158 G-~~v~~~~G~~~~~~l~~~l  177 (182)
                      | +...++.|..+.+++.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            7 8888999999999998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.82  E-value=2.3e-19  Score=130.24  Aligned_cols=97  Identities=22%  Similarity=0.396  Sum_probs=83.5

Q ss_pred             hHHHHHHcCC-CcEEEEEEcCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCCCC-------------hHHHHHcCCC
Q 030165           85 SWENLVISSE-NPVLVEFWAPWCGPCRMIAPAIE---ELAKEYAGKVACFKLNTDDS-------------PNIATKYGIR  147 (182)
Q Consensus        85 ~~~~~~~~~~-~~vlV~F~a~wC~~C~~~~p~l~---~~a~~~~~~v~~~~vd~d~~-------------~~l~~~~~I~  147 (182)
                      ++++ +++++ ++++|+||++||++|+.+.+.+.   ++.+.+.+++.++.+|.++.             .+++.+|+|+
T Consensus         5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~   83 (125)
T cd02951           5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR   83 (125)
T ss_pred             HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence            4444 55677 99999999999999999999884   56667766789999999865             6899999999


Q ss_pred             cccEEEEEE-C-CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          148 SIPTVLFFK-N-GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       148 ~iPTl~~f~-~-G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++||+++|. + |+++.++.|..+.+++.++|+++++
T Consensus        84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            999999997 4 6999999999999999999998763

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.81  E-value=2.7e-19  Score=139.52  Aligned_cols=101  Identities=21%  Similarity=0.399  Sum_probs=87.6

Q ss_pred             cCccEEcChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      -+.+.+++.++|...+...  +.+|||+||++||++|+.+.|.|++++++|+. ++|+++|++..   ..+|+|+++||+
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTl  156 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTI  156 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEE
Confidence            4789999999999877654  35899999999999999999999999999974 99999999863   689999999999


Q ss_pred             EEEECCeEEEEEEcC-------CCHHHHHHHHHH
Q 030165          153 LFFKNGEKKESIIGA-------VPKSTLSSTLDK  179 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~-------~~~~~l~~~l~~  179 (182)
                      ++|+||+.++++.|.       .+.++|..+|.+
T Consensus       157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            999999999999985       356667666654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.79  E-value=5e-19  Score=127.07  Aligned_cols=83  Identities=28%  Similarity=0.598  Sum_probs=75.0

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcccE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTD--DSPNIATKYGIRSIPT  151 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d--~~~~l~~~~~I~~iPT  151 (182)
                      .+.+++.++|++.+...+++++|+||++||++|+.+.|.|+++++++.+   .+.|+++|++  .+.+++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            5788999999998888889999999999999999999999999998753   5899999975  4678999999999999


Q ss_pred             EEEEECCe
Q 030165          152 VLFFKNGE  159 (182)
Q Consensus       152 l~~f~~G~  159 (182)
                      +++|++|+
T Consensus        82 ~~lf~~~~   89 (114)
T cd02992          82 LRYFPPFS   89 (114)
T ss_pred             EEEECCCC
Confidence            99999887

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.2e-19  Score=154.38  Aligned_cols=106  Identities=33%  Similarity=0.625  Sum_probs=98.6

Q ss_pred             ccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCccc
Q 030165           74 AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIP  150 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iP  150 (182)
                      ....+.+++.++|+. .+..+..++|.||||||++|+.++|.|++.++.+..   .+..++||+.++.+++.+|+|+++|
T Consensus        23 ~~~~Vl~Lt~dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cccceEEEecccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            357789999999999 668889999999999999999999999999999865   5899999999999999999999999


Q ss_pred             EEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      |+.+|+||+....+.|....+.+..|+.+.
T Consensus       102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq  131 (493)
T KOG0190|consen  102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQ  131 (493)
T ss_pred             eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence            999999999878899999999999999875

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.79  E-value=2.6e-18  Score=115.91  Aligned_cols=92  Identities=52%  Similarity=1.062  Sum_probs=83.0

Q ss_pred             hHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEE
Q 030165           85 SWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI  164 (182)
Q Consensus        85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~  164 (182)
                      +|+. ....+++++|+||++||++|+.+.+.+++++++ .+++.++.+|.+.+.+++++|++.++||+++|++|+.+..+
T Consensus         2 ~~~~-~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~   79 (93)
T cd02947           2 EFEE-LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV   79 (93)
T ss_pred             chHH-HHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence            4665 334459999999999999999999999999988 56799999999999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHH
Q 030165          165 IGAVPKSTLSSTLD  178 (182)
Q Consensus       165 ~G~~~~~~l~~~l~  178 (182)
                      .|..+.++|.++|+
T Consensus        80 ~g~~~~~~l~~~i~   93 (93)
T cd02947          80 VGADPKEELEEFLE   93 (93)
T ss_pred             ecCCCHHHHHHHhC
Confidence            99999899988873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.79  E-value=2e-18  Score=149.28  Aligned_cols=104  Identities=32%  Similarity=0.645  Sum_probs=95.1

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.++++++|++.+ ..+++++|+|||+||++|+.+.|.++++++.+.+   ++.|+.+|++++.+++++|+|.++||++
T Consensus         2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~   80 (462)
T TIGR01130         2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK   80 (462)
T ss_pred             CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence            47889999999855 6678999999999999999999999999988764   3999999999999999999999999999


Q ss_pred             EEECCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEK-KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~-v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+. +.++.|..+.+.|.+|+.+.+
T Consensus        81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  109 (462)
T TIGR01130        81 IFRNGEDSVSDYNGPRDADGIVKYMKKQS  109 (462)
T ss_pred             EEeCCccceeEecCCCCHHHHHHHHHHhc
Confidence            9999988 788999999999999998875

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.78  E-value=1.8e-18  Score=150.03  Aligned_cols=106  Identities=27%  Similarity=0.448  Sum_probs=90.6

Q ss_pred             cCccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCCh-HHH-HHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP-NIA-TKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~-~l~-~~~~I~~i  149 (182)
                      ...|.+++.++|++++.  ..++++||+|||+||++|+.+.|.|+++++++.++ +.|+++|+|.+. +++ ++|+|+++
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~  429 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF  429 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence            45789999999999764  57899999999999999999999999999999764 899999999764 454 78999999


Q ss_pred             cEEEEEECCe-EEEEEE-cCCCHHHHHHHHHHH
Q 030165          150 PTVLFFKNGE-KKESII-GAVPKSTLSSTLDKY  180 (182)
Q Consensus       150 PTl~~f~~G~-~v~~~~-G~~~~~~l~~~l~~~  180 (182)
                      ||+++|++|+ ....+. |..+.+.|..||+.+
T Consensus       430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            9999999885 334454 578999999999764

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.78  E-value=1.9e-18  Score=150.65  Aligned_cols=107  Identities=28%  Similarity=0.578  Sum_probs=97.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      ...+..+++++|++.+.+++++|+|+|||+||++|+.+.|.|+++++.+.+  .+.++++|.+.+...+++|+|+++||+
T Consensus       356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~  435 (477)
T PTZ00102        356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI  435 (477)
T ss_pred             CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence            456888999999998888999999999999999999999999999998864  589999999999999999999999999


Q ss_pred             EEEECCeEE-EEEEcCCCHHHHHHHHHHHh
Q 030165          153 LFFKNGEKK-ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~~G~~v-~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|++|+.+ .++.|..+.+++.+||++.+
T Consensus       436 ~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        436 LFVKAGERTPIPYEGERTVEGFKEFVNKHA  465 (477)
T ss_pred             EEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence            999977665 57899999999999999865

>PTZ00102 disulphide isomerase; Provisional

Probab=99.77  E-value=4.6e-18  Score=148.26  Aligned_cols=104  Identities=30%  Similarity=0.649  Sum_probs=95.0

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      ..+..++.++|++. ...++.++|+|||+||++|+++.|.++++++.+.   .++.++.+|++++.+++++|+|+++||+
T Consensus        32 ~~v~~l~~~~f~~~-i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         32 EHVTVLTDSTFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI  110 (477)
T ss_pred             CCcEEcchhhHHHH-HhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence            56889999999994 4667899999999999999999999999997774   3599999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|++|+.+ ++.|..+.+.|.+|+++++
T Consensus       111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~  138 (477)
T PTZ00102        111 KFFNKGNPV-NYSGGRTADGIVSWIKKLT  138 (477)
T ss_pred             EEEECCceE-EecCCCCHHHHHHHHHHhh
Confidence            999999877 8899999999999999875

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.77  E-value=1.9e-18  Score=124.05  Aligned_cols=99  Identities=17%  Similarity=0.261  Sum_probs=83.4

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEc--CCCh---hhhhhhHHHHHHHHHhcCceEEEEEeCC-----CChHHHHHcCC
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWA--PWCG---PCRMIAPAIEELAKEYAGKVACFKLNTD-----DSPNIATKYGI  146 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a--~wC~---~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----~~~~l~~~~~I  146 (182)
                      .+..+++++|++ ++.+++.+||.|||  |||+   +|++++|.+.+.+.    .+.+++||++     ++.+|+++|+|
T Consensus         2 g~v~L~~~nF~~-~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           2 GCVDLDTVTFYK-VIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             CeeECChhhHHH-HHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence            367899999999 55778899999999  9999   77777777666553    3889999994     57889999999


Q ss_pred             C--cccEEEEEECCe--EEEEEEcC-CCHHHHHHHHHHH
Q 030165          147 R--SIPTVLFFKNGE--KKESIIGA-VPKSTLSSTLDKY  180 (182)
Q Consensus       147 ~--~iPTl~~f~~G~--~v~~~~G~-~~~~~l~~~l~~~  180 (182)
                      +  ++||+.+|++|+  ....+.|. .+.+.|.+||.+.
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9  999999999985  44678897 9999999999863

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.77  E-value=4.6e-18  Score=147.36  Aligned_cols=105  Identities=29%  Similarity=0.496  Sum_probs=91.4

Q ss_pred             CccEEcChhhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC-CChHHHH-HcCCCccc
Q 030165           76 NEVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD-DSPNIAT-KYGIRSIP  150 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d-~~~~l~~-~~~I~~iP  150 (182)
                      ..+.+++.++|++++.  ..++++||+|||+||++|++|.|.|+++++++.+. +.|+++|+| ++.+++. +|+|.++|
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P  424 (457)
T PLN02309        345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP  424 (457)
T ss_pred             CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence            5788999999999764  57899999999999999999999999999999754 999999999 7788886 69999999


Q ss_pred             EEEEEECCeE-EEEEE-cCCCHHHHHHHHHHH
Q 030165          151 TVLFFKNGEK-KESII-GAVPKSTLSSTLDKY  180 (182)
Q Consensus       151 Tl~~f~~G~~-v~~~~-G~~~~~~l~~~l~~~  180 (182)
                      |+++|++|.. ...+. |..+.+.|.+||+.+
T Consensus       425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999987753 33454 468999999999875

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.76  E-value=5.8e-18  Score=118.36  Aligned_cols=89  Identities=19%  Similarity=0.356  Sum_probs=82.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEEEEC--CeEEEEEEcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPTVLFFKN--GEKKESIIGAV  168 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPTl~~f~~--G~~v~~~~G~~  168 (182)
                      +++++++.||++||++|+++.|.++++++++.+++.|+++|.++++.+++.|||.  ++|+++++++  |++.....|.+
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~   90 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL   90 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence            3789999999999999999999999999999999999999999999999999999  9999999988  77766666767


Q ss_pred             CHHHHHHHHHHHh
Q 030165          169 PKSTLSSTLDKYV  181 (182)
Q Consensus       169 ~~~~l~~~l~~~l  181 (182)
                      +.++|.+||++++
T Consensus        91 ~~~~l~~fi~~~~  103 (103)
T cd02982          91 TAESLEEFVEDFL  103 (103)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.76  E-value=1.5e-17  Score=111.64  Aligned_cols=81  Identities=31%  Similarity=0.524  Sum_probs=74.4

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~  176 (182)
                      .+..||++||++|+.+.|.+++++++++.++.++++|.+++++++++|||+++||+++  +|+  .++.|..+.+++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~   77 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence            4778999999999999999999999998889999999999999999999999999986  886  378899999999999


Q ss_pred             HHHHh
Q 030165          177 LDKYV  181 (182)
Q Consensus       177 l~~~l  181 (182)
                      |+++|
T Consensus        78 l~~~~   82 (82)
T TIGR00411        78 IKKRL   82 (82)
T ss_pred             HHhhC
Confidence            98865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00062 glutaredoxin; Provisional

Probab=99.75  E-value=1.4e-17  Score=130.65  Aligned_cols=90  Identities=13%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      .+.+++.+.+....+.+|++|||+||++|+.+.|++++++++|+. +.|+.||.|        |+|.++||+++|+||++
T Consensus         4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~   74 (204)
T PTZ00062          4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQL   74 (204)
T ss_pred             CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEE
Confidence            356778885544447899999999999999999999999999975 999999987        99999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHH
Q 030165          161 KESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++++.|+ ++.+|..++.++
T Consensus        75 i~r~~G~-~~~~~~~~~~~~   93 (204)
T PTZ00062         75 INSLEGC-NTSTLVSFIRGW   93 (204)
T ss_pred             EeeeeCC-CHHHHHHHHHHH
Confidence            9999996 577787777665

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.73  E-value=2.5e-17  Score=118.98  Aligned_cols=96  Identities=17%  Similarity=0.330  Sum_probs=76.2

Q ss_pred             cChhhHHHHHHcC-CCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcC
Q 030165           81 VTDSSWENLVISS-ENPVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIATKYG  145 (182)
Q Consensus        81 l~~~~~~~~~~~~-~~~vlV~F~a-------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~~~~  145 (182)
                      -+.++|.+.+... +++++|+|||       +||++|+++.|.++++++++++++.|++||+++       +.+++.+|+
T Consensus         7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~   86 (119)
T cd02952           7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK   86 (119)
T ss_pred             cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence            3567777766543 6899999999       999999999999999999999779999999976       458999999


Q ss_pred             CC-cccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          146 IR-SIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       146 I~-~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      |. ++||+++|++|+.+... .-.+.+.+..++
T Consensus        87 I~~~iPT~~~~~~~~~l~~~-~c~~~~~~~~~~  118 (119)
T cd02952          87 LTTGVPTLLRWKTPQRLVED-ECLQADLVEMFF  118 (119)
T ss_pred             cccCCCEEEEEcCCceecch-hhcCHHHHHHhh
Confidence            98 99999999877533221 123555555443

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.72  E-value=1.6e-17  Score=119.91  Aligned_cols=94  Identities=19%  Similarity=0.388  Sum_probs=73.4

Q ss_pred             HHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCc--ccEEEEEE-CCeEEEE
Q 030165           88 NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-NIATKYGIRS--IPTVLFFK-NGEKKES  163 (182)
Q Consensus        88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~l~~~~~I~~--iPTl~~f~-~G~~v~~  163 (182)
                      +.+..++++++|+|||+||++|+.+.|.+.+..........|+.+|++.+. ...++|++.+  +||+++|. +|+++.+
T Consensus        13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence            335678999999999999999999999999987765444577778887664 4568899987  99999995 9999885


Q ss_pred             E---EcCCCHHHHHHHHHHHh
Q 030165          164 I---IGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       164 ~---~G~~~~~~l~~~l~~~l  181 (182)
                      +   .|..+.+.+...|+.++
T Consensus        93 ~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          93 IINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             hccCCCCccccccCCCHHHHH
Confidence            4   45566666666665543

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.69  E-value=2e-16  Score=125.29  Aligned_cols=87  Identities=21%  Similarity=0.400  Sum_probs=75.8

Q ss_pred             CcEEEEEEc---CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE-EEEEcCCC
Q 030165           95 NPVLVEFWA---PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK-ESIIGAVP  169 (182)
Q Consensus        95 ~~vlV~F~a---~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v-~~~~G~~~  169 (182)
                      ...++.|++   +||++|+++.|.++++++++++ ++.++.+|.|++++++++|+|.++||+++|++|+.+ .++.|..+
T Consensus        20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~   99 (215)
T TIGR02187        20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA   99 (215)
T ss_pred             CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence            344666877   9999999999999999999964 255777777799999999999999999999999998 48999999


Q ss_pred             HHHHHHHHHHHh
Q 030165          170 KSTLSSTLDKYV  181 (182)
Q Consensus       170 ~~~l~~~l~~~l  181 (182)
                      .+++.+||+.++
T Consensus       100 ~~~l~~~i~~~~  111 (215)
T TIGR02187       100 GYEFAALIEDIV  111 (215)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.69  E-value=1.8e-16  Score=137.14  Aligned_cols=105  Identities=30%  Similarity=0.611  Sum_probs=93.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.+..++.++|.+.+...+++++|+||++||++|+.+.|.++++++.+.+   ++.|+++|++.+. +.. |+|+++||
T Consensus       345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt  422 (462)
T TIGR01130       345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPT  422 (462)
T ss_pred             CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCE
Confidence            356788999999998888899999999999999999999999999999987   7999999999765 333 99999999


Q ss_pred             EEEEECCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKK--ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v--~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+..  ..+.|..+.+.|.+||++..
T Consensus       423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  454 (462)
T TIGR01130       423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA  454 (462)
T ss_pred             EEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence            9999988763  57789999999999998754

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.66  E-value=1.7e-16  Score=112.58  Aligned_cols=86  Identities=27%  Similarity=0.565  Sum_probs=68.2

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHH---HHHHhcCceEEEEEeCCCC--------------------hHHHHHcCCCc
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEE---LAKEYAGKVACFKLNTDDS--------------------PNIATKYGIRS  148 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~---~a~~~~~~v~~~~vd~d~~--------------------~~l~~~~~I~~  148 (182)
                      .++++++|+||++||++|+.+.+.+.+   +...+..++.++.++.+..                    .+++++|||++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            568999999999999999999999875   4445555688888888754                    35899999999


Q ss_pred             ccEEEEEE-CCeEEEEEEcCCCHHHHHHHH
Q 030165          149 IPTVLFFK-NGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       149 iPTl~~f~-~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      +||++++. +|+++.++.|.+++++|.++|
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999995 899999999999999999875

...

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.65  E-value=2.2e-15  Score=116.78  Aligned_cols=87  Identities=21%  Similarity=0.477  Sum_probs=73.6

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-----------------------HHHHcCCCc
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-----------------------IATKYGIRS  148 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-----------------------l~~~~~I~~  148 (182)
                      ..+++++|+||++||++|+...|.++++.++   .+.++.|+.+++.+                       +...|||.+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            3689999999999999999999999998653   47888888755432                       445789999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+.+++ ++|+.+.++.|.++.++++++|+.++
T Consensus       143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            9976666 69999999999999999999999886

>PHA02125 thioredoxin-like protein

Probab=99.65  E-value=1.8e-15  Score=100.67  Aligned_cols=71  Identities=27%  Similarity=0.574  Sum_probs=60.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSST  176 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~~  176 (182)
                      +++||++||++|+.+.|.|+++.      +.++++|.+++++++++|+|.++||++   +|+.+++..|.. +..+|++.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~   72 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK   72 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence            78999999999999999998653      568999999999999999999999987   788889999963 33666554


Q ss_pred             H
Q 030165          177 L  177 (182)
Q Consensus       177 l  177 (182)
                      |
T Consensus        73 ~   73 (75)
T PHA02125         73 L   73 (75)
T ss_pred             h
Confidence            4

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.65  E-value=1.5e-15  Score=101.42  Aligned_cols=73  Identities=21%  Similarity=0.400  Sum_probs=62.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSST  176 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~~  176 (182)
                      .|+||++||++|+.+.|.+++++++++.++.++++|   +.+.+.+|||.++||+++  ||+++  +.|.. +.+++.++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~   74 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence            488999999999999999999999998888888887   344588899999999999  99877  77754 45777776


Q ss_pred             H
Q 030165          177 L  177 (182)
Q Consensus       177 l  177 (182)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            5

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.64  E-value=2.7e-15  Score=118.83  Aligned_cols=96  Identities=23%  Similarity=0.421  Sum_probs=80.0

Q ss_pred             EEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           79 QVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      ..++.+..+. +...++++ ++.||++||++|+.+.+.+++++.++ +++.+.++|.+++++++++|||.++||++++++
T Consensus       118 ~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~  195 (215)
T TIGR02187       118 PGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKG  195 (215)
T ss_pred             CCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecC
Confidence            3455554544 33455665 55599999999999999999999886 469999999999999999999999999999988


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHH
Q 030165          158 GEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      |+.   +.|..+.++|.+||++
T Consensus       196 ~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       196 VEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             CEE---EECCCCHHHHHHHHHh
Confidence            863   8899999999999975

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.64  E-value=2.3e-15  Score=113.44  Aligned_cols=87  Identities=21%  Similarity=0.485  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC------------hHHH-HHc---CCCcccEEEEEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS------------PNIA-TKY---GIRSIPTVLFFK  156 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~------------~~l~-~~~---~I~~iPTl~~f~  156 (182)
                      .++..+|+|||+||++|+++.|.++++++++.  +.++.|+.|+.            .+.. ..|   +|.++||+++++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID  126 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN  126 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence            45677999999999999999999999999984  56666666643            2333 345   899999999995


Q ss_pred             -CCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165          157 -NGEK-KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 -~G~~-v~~~~G~~~~~~l~~~l~~~l  181 (182)
                       +|+. +....|.++.+++.+.|+++|
T Consensus       127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       127 VNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence             6665 557899999999999998875

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.64  E-value=2.8e-15  Score=109.20  Aligned_cols=98  Identities=14%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHH--------cCCCccc
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATK--------YGIRSIP  150 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~--------~~I~~iP  150 (182)
                      +++.+.. +.+++|+|+|+|+++||++|++|.+. |  .++++.+..++.++++|.++.++++++        ||+.++|
T Consensus         4 ~~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P   82 (124)
T cd02955           4 GEEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP   82 (124)
T ss_pred             CHHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence            4455555 77889999999999999999999874 3  467777777799999999998887653        5999999


Q ss_pred             EEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHHH
Q 030165          151 TVLFF-KNGEKKESIIGA-----VPKSTLSSTLDKY  180 (182)
Q Consensus       151 Tl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~~  180 (182)
                      |++++ .+|+.+....+.     .+...+.++++++
T Consensus        83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence            99999 589998877665     3445677776654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.64  E-value=6.6e-15  Score=107.79  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=88.7

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcC--CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAP--WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~--wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ....++.++++..+ ..+...+|+|-.+  -++..-...-+|++++++|.+ +++|++||+|++++++.+|||+++||++
T Consensus        18 g~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl   96 (132)
T PRK11509         18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_pred             CCCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            45567778888855 4444444444432  378888899999999999984 5999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+||+.++++.|..+.+++.++|+++|+
T Consensus        97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~  125 (132)
T PRK11509         97 VFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_pred             EEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999874

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.64  E-value=1.7e-15  Score=135.45  Aligned_cols=99  Identities=17%  Similarity=0.479  Sum_probs=83.5

Q ss_pred             ChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccE
Q 030165           82 TDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPT  151 (182)
Q Consensus        82 ~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPT  151 (182)
                      +.+++++.+.   .++++|+|+|||+||++|+.+++..   +++.++++ ++.++++|.+++    .+++++|+|.++||
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt  537 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT  537 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence            4566766543   3579999999999999999999875   67878876 489999999854    57899999999999


Q ss_pred             EEEEE-CCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFK-NGEKK--ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~-~G~~v--~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|+ ||+++  .++.|..+++++.++++++.
T Consensus       538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            99996 88884  68899999999999999864

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.63  E-value=1.8e-15  Score=132.96  Aligned_cols=90  Identities=20%  Similarity=0.481  Sum_probs=77.0

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEe----------------------------CCCChHH
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLN----------------------------TDDSPNI  140 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd----------------------------~d~~~~l  140 (182)
                      .++.+++|||+|||+||++|+.+.|.|+++++++. +++.++.|.                            .|.+..+
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            34578999999999999999999999999999986 346665543                            3456678


Q ss_pred             HHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          141 ATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       141 ~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      ++.|+|+++||++++ ++|+++.++.|.++.++|.++|+.
T Consensus       132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            999999999999766 799999999999999999999983

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.61  E-value=6.6e-15  Score=112.82  Aligned_cols=88  Identities=24%  Similarity=0.496  Sum_probs=73.0

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCCc
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIRS  148 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~~  148 (182)
                      ..+++++|+||++||++|+.+.|.++++.++   ++.++.|+.+                       ....+++.|++.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            3579999999999999999999999988754   3666666643                       3335677899999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+.+++ +||+++.++.|.++.++++++|+++++
T Consensus       138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            9966666 799999999999999999999999874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.5e-16  Score=133.24  Aligned_cols=102  Identities=32%  Similarity=0.638  Sum_probs=89.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .++..+.+++|++++.++++.|||.|||||||||++++|+++++++.|++  ++.++++|.+.|.--  ...|+++|||+
T Consensus       366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~  443 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTIL  443 (493)
T ss_pred             CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEE
Confidence            56899999999999999999999999999999999999999999999986  488999998876542  35777899999


Q ss_pred             EEECCe--EEEEEEcCCCHHHHHHHHHH
Q 030165          154 FFKNGE--KKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       154 ~f~~G~--~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +|+.|.  ....+.|..+.++|..+|++
T Consensus       444 ~~pag~k~~pv~y~g~R~le~~~~fi~~  471 (493)
T KOG0190|consen  444 FFPAGHKSNPVIYNGDRTLEDLKKFIKK  471 (493)
T ss_pred             EecCCCCCCCcccCCCcchHHHHhhhcc
Confidence            998665  45677899999999999875

>TIGR02740 TraF-like TraF-like protein

Probab=99.60  E-value=1.5e-14  Score=118.35  Aligned_cols=87  Identities=17%  Similarity=0.338  Sum_probs=73.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEEC-CeE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------SPNIATKYGIRSIPTVLFFKN-GEK  160 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------~~~l~~~~~I~~iPTl~~f~~-G~~  160 (182)
                      .++++||+||++||++|+.+.|.|++++++|.  +.++.|++|.           +..++++|||+++||++++++ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            57899999999999999999999999999986  5666677664           357899999999999999975 666


Q ss_pred             EEE-EEcCCCHHHHHHHHHHHh
Q 030165          161 KES-IIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       161 v~~-~~G~~~~~~l~~~l~~~l  181 (182)
                      +.. ..|.++.++|.+.|..+.
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHh
Confidence            554 559999999999887653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.59  E-value=9.2e-15  Score=106.05  Aligned_cols=79  Identities=24%  Similarity=0.604  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------CCChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-----------------------DDSPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~I~~i  149 (182)
                      .+++++|+||++||++|+.+.|.++++.+++.  +.++.|+.                       |.+..++..|++.++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            47899999999999999999999999988863  66666653                       455678889999999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCCHHHH
Q 030165          150 PTVLFF-KNGEKKESIIGAVPKSTL  173 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~~~~l  173 (182)
                      |+.+++ ++|+++.++.|.++++.|
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHhc
Confidence            966666 699999999999998765

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.59  E-value=5.2e-15  Score=120.30  Aligned_cols=99  Identities=32%  Similarity=0.572  Sum_probs=89.1

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-----GKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-----~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      +.++++. +..+...|+|.|||+||+..++++|+|++.++.+.     +++.+.+||+|.+..++++|.|..+||+-+|.
T Consensus         2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            4566777 56778999999999999999999999999887663     57999999999999999999999999999999


Q ss_pred             CCeEEE-EEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKKE-SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v~-~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||..+. .+.|..+.+.|.++|++.+
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~  106 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQL  106 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHh
Confidence            999887 7789999999999999876

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.57  E-value=5.6e-14  Score=106.81  Aligned_cols=102  Identities=26%  Similarity=0.563  Sum_probs=83.9

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC--------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD--------------------  136 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~--------------------  136 (182)
                      +..++++.+.. ....+++++|+||++||++|+...+.+.++++++.+. +.++.++.|+                    
T Consensus        46 ~~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~  124 (173)
T PRK03147         46 LTDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI  124 (173)
T ss_pred             eecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            44555555543 2235789999999999999999999999999999754 8888888753                    


Q ss_pred             --ChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          137 --SPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       137 --~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                        +.++.+.|+|.++|+++++ ++|+.+..+.|..+.+++.++++++
T Consensus       125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence              3567899999999998888 5899988999999999999998864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.57  E-value=2.2e-14  Score=135.85  Aligned_cols=89  Identities=21%  Similarity=0.435  Sum_probs=78.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeC---------------------------CCChHHHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNT---------------------------DDSPNIATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~  144 (182)
                      .+++|||+|||+||++|+++.|.|++++++|+++ +.++.|..                           |.+..++++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            5899999999999999999999999999999765 77777742                           2234578899


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|.++||++++ ++|+++.++.|....+++.++|++++
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence            99999999999 69999999999999999999999876

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.4e-14  Score=123.79  Aligned_cols=105  Identities=34%  Similarity=0.643  Sum_probs=93.8

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      ....++...+.......+++++|+||+|||++|+.+.|.+++++..+.+.+.+..||++.+.+++++|+|.++||+.+|.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~  109 (383)
T KOG0191|consen   30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR  109 (383)
T ss_pred             chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence            34445566777778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .|.....+.|..+.+.+.+++.+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~  134 (383)
T KOG0191|consen  110 PGKKPIDYSGPRNAESLAEFLIKEL  134 (383)
T ss_pred             CCCceeeccCcccHHHHHHHHHHhh
Confidence            8866777778889999999888765

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.56  E-value=2.9e-14  Score=106.56  Aligned_cols=71  Identities=20%  Similarity=0.440  Sum_probs=59.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCCCCh-------------------------H
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--------KVACFKLNTDDSP-------------------------N  139 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--------~v~~~~vd~d~~~-------------------------~  139 (182)
                      .+++++|+|||+||++|+.+.|.|.++++++.+        ++.++.|+.|++.                         .
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            579999999999999999999999998876653        4888888876532                         3


Q ss_pred             HHHHcCCCcccEEEEEE-CCeEEEE
Q 030165          140 IATKYGIRSIPTVLFFK-NGEKKES  163 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~-~G~~v~~  163 (182)
                      ++.+|+|.++||++++. +|+++.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEee
Confidence            67789999999999995 8888765

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.55  E-value=3e-14  Score=103.96  Aligned_cols=72  Identities=24%  Similarity=0.505  Sum_probs=60.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCC------------------------hHHHHHcC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDS------------------------PNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~  145 (182)
                      .++++||+||++||++|+.+.|.+.++.+++.+   ++.++.++.|..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            578999999999999999999999999988863   477888877654                        35778899


Q ss_pred             CCcccEEEEEE-CCeEEEEE
Q 030165          146 IRSIPTVLFFK-NGEKKESI  164 (182)
Q Consensus       146 I~~iPTl~~f~-~G~~v~~~  164 (182)
                      |.++|++++++ +|+++.+.
T Consensus        97 v~~~P~~~lid~~G~i~~~~  116 (131)
T cd03009          97 IEGIPTLIILDADGEVVTTD  116 (131)
T ss_pred             CCCCCEEEEECCCCCEEccc
Confidence            99999999995 88877654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.54  E-value=8.4e-15  Score=119.23  Aligned_cols=98  Identities=27%  Similarity=0.581  Sum_probs=80.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +..++++ |.+  .+.+..++|+||||||++|+++.|++.++.-++.+   .+++.++|+..-+.++.+|||+++||+.+
T Consensus        30 VeDLddk-Fkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~  106 (468)
T KOG4277|consen   30 VEDLDDK-FKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF  106 (468)
T ss_pred             hhhhhHH-hhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence            4444443 333  35678899999999999999999999999876653   48999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      |++|..+ .+.|...++.+.++..+
T Consensus       107 ~kgd~a~-dYRG~R~Kd~iieFAhR  130 (468)
T KOG4277|consen  107 FKGDHAI-DYRGGREKDAIIEFAHR  130 (468)
T ss_pred             ecCCeee-ecCCCccHHHHHHHHHh
Confidence            9988655 45577889999888664

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.54  E-value=5.5e-14  Score=96.85  Aligned_cols=66  Identities=38%  Similarity=0.873  Sum_probs=56.3

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCCh-------------------------HHHHHcCC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSP-------------------------NIATKYGI  146 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~-------------------------~l~~~~~I  146 (182)
                      +++++|+||++||++|+...|.++++.++|+  +++.++.|+.|+..                         .+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5899999999999999999999999999999  77999999987653                         37788999


Q ss_pred             CcccEEEEEE-CCe
Q 030165          147 RSIPTVLFFK-NGE  159 (182)
Q Consensus       147 ~~iPTl~~f~-~G~  159 (182)
                      .++|+++++. +|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            9999999995 665

...

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.51  E-value=2e-13  Score=98.24  Aligned_cols=95  Identities=26%  Similarity=0.548  Sum_probs=71.9

Q ss_pred             EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------CCCC
Q 030165           79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN---------------------TDDS  137 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd---------------------~d~~  137 (182)
                      ..++++.+... ...+++++|+||++||++|+.+.|.+.++++++.  +..+.+|                     .|.+
T Consensus         6 ~~~~g~~~~~~-~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           6 TTLDGEQFDLE-SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             ecCCCCEeeHH-HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            34555555542 3346899999999999999999999999987742  2222222                     1345


Q ss_pred             hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165          138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       138 ~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~  176 (182)
                      .+++++|+|.++|+++++++|++..+..|..++++|.+.
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence            679999999999999999755588899999999998764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.51  E-value=1.1e-13  Score=101.46  Aligned_cols=72  Identities=24%  Similarity=0.513  Sum_probs=60.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCCh-------------------------HHHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSP-------------------------NIATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~-------------------------~l~~~~  144 (182)
                      .+++++|+||++||++|+...|.++++++++.+   ++.++.++.|...                         .+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            479999999999999999999999999988875   4778888877542                         456779


Q ss_pred             CCCcccEEEEEE-CCeEEEEE
Q 030165          145 GIRSIPTVLFFK-NGEKKESI  164 (182)
Q Consensus       145 ~I~~iPTl~~f~-~G~~v~~~  164 (182)
                      +|.++||+++++ +|+++.+.
T Consensus        96 ~v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             CCCCCCEEEEECCCCCEEchh
Confidence            999999999995 78776554

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.50  E-value=1.3e-13  Score=89.29  Aligned_cols=61  Identities=23%  Similarity=0.495  Sum_probs=54.5

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      -++.||++||++|+.+.+.++++++.++ ++.+..+|.+++++++++|||.++||+++  +|+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~   62 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV   62 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence            3778999999999999999999987654 59999999999999999999999999866  6754

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.50  E-value=3.1e-13  Score=92.93  Aligned_cols=78  Identities=17%  Similarity=0.269  Sum_probs=65.9

Q ss_pred             cCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCH
Q 030165           92 SSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus        92 ~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~  170 (182)
                      .-++| -+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|||.++||+++  ||+.+.  .|..+.
T Consensus         9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~   83 (89)
T cd03026           9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTL   83 (89)
T ss_pred             hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCH
Confidence            33455 5888999999999999999999998886 59999999999999999999999999975  898766  476665


Q ss_pred             HHHH
Q 030165          171 STLS  174 (182)
Q Consensus       171 ~~l~  174 (182)
                      +++.
T Consensus        84 ~e~~   87 (89)
T cd03026          84 EEIL   87 (89)
T ss_pred             HHHh
Confidence            5543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.50  E-value=3.2e-13  Score=104.00  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=69.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-------------hHHHHHcCC--CcccEEEEE-ECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-------------PNIATKYGI--RSIPTVLFF-KNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-------------~~l~~~~~I--~~iPTl~~f-~~G~~v  161 (182)
                      +|.||++||++|+++.|.+++++++|+  +.++.|+.|+.             ..+.+.|++  .++||.+++ ++|+++
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            778999999999999999999999985  67777776533             236678995  699998888 689886


Q ss_pred             -EEEEcCCCHHHHHHHHHHHhC
Q 030165          162 -ESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       162 -~~~~G~~~~~~l~~~l~~~l~  182 (182)
                       ..+.|.++.+++.+.|+++++
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence             579999999999999998863

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.50  E-value=4.8e-13  Score=95.66  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             HHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEEE--CCeE
Q 030165           88 NLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFFK--NGEK  160 (182)
Q Consensus        88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f~--~G~~  160 (182)
                      +.+.+++++++|+|+++||.+|+.|... |  +++.+.+..+..++++|.+  +..+++..|++.++|+++++.  +|+.
T Consensus        11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~   90 (114)
T cd02958          11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV   90 (114)
T ss_pred             HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence            3355689999999999999999999874 4  5677777777888888887  456789999999999999994  7999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHh
Q 030165          161 KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +.+..|..++++|...|++.+
T Consensus        91 l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          91 LKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             eEEEcCCCCHHHHHHHHHHHH
Confidence            999999999999999998875

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=3.5e-14  Score=123.62  Aligned_cols=107  Identities=21%  Similarity=0.495  Sum_probs=86.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTD--DSPNIATKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d--~~~~l~~~~~I~~i  149 (182)
                      .+.+..++.++|...+..+.+..+|+||++|||+|+.++|.|+++++++.+   -++++.||+-  +|..+|++|+|+++
T Consensus        38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~  117 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY  117 (606)
T ss_pred             CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence            478999999999998878888999999999999999999999999988754   4888899984  57789999999999


Q ss_pred             cEEEEEECCeEE----EEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFKNGEKK----ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~~G~~v----~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||+.+|+.+-..    ..+.|...+.++.+.+.+.|
T Consensus       118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l  153 (606)
T KOG1731|consen  118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL  153 (606)
T ss_pred             ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence            999999533222    34445555666666665544

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.45  E-value=6.1e-13  Score=92.79  Aligned_cols=74  Identities=41%  Similarity=0.873  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDS-----------------------PNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~I~~  148 (182)
                      .+++++|+||++||++|+...+.+.++.+++. .++.++.++.|..                       .++.+.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            37899999999999999999999999999986 4599999999986                       77899999999


Q ss_pred             ccEEEEE-ECCeEEEEEEc
Q 030165          149 IPTVLFF-KNGEKKESIIG  166 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G  166 (182)
                      +|+++++ ++|+.+.++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            9999999 48988887765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=5.5e-13  Score=114.04  Aligned_cols=105  Identities=31%  Similarity=0.523  Sum_probs=96.5

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.+++..+|...+...+..++|.||+|||++|+.+.|.+++++..+.  ..+.+..+|++....++++++|+++||+.+
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~  224 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL  224 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence            388999999999888999999999999999999999999999999885  568999999998899999999999999999


Q ss_pred             EECCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEK-KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~-v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|.. .....|..+.+.+..|+++..
T Consensus       225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~  252 (383)
T KOG0191|consen  225 FPPGEEDIYYYSGLRDSDSIVSFVEKKE  252 (383)
T ss_pred             ecCCCcccccccccccHHHHHHHHHhhc
Confidence            998888 778888899999999998754

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.41  E-value=1.3e-12  Score=92.66  Aligned_cols=70  Identities=20%  Similarity=0.450  Sum_probs=54.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--------------------ChHHHHHcCCCcccEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--------------------SPNIATKYGIRSIPTV  152 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--------------------~~~l~~~~~I~~iPTl  152 (182)
                      .+++++|+||++||++|+.+.|.++++++++.+++.++.+..++                    ..++.++|++.++|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~   99 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA   99 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence            47899999999999999999999999999887777777663111                    1135667888899998


Q ss_pred             EEEE-CCeEEE
Q 030165          153 LFFK-NGEKKE  162 (182)
Q Consensus       153 ~~f~-~G~~v~  162 (182)
                      ++++ +|+.+.
T Consensus       100 ~vid~~G~v~~  110 (114)
T cd02967         100 VLLDEAGVIAA  110 (114)
T ss_pred             EEECCCCeEEe
Confidence            8885 776654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.40  E-value=1.7e-12  Score=101.87  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHHcCC--------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S----PNIATKYGI--------------  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~----~~l~~~~~I--------------  146 (182)
                      .++++||.|||+||++|+...|.|.++.++|.+ .+.++.|++++       .    ...++++++              
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            578999999999999999999999999999975 38899997631       2    223444443              


Q ss_pred             ----------------------Cccc----EEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          147 ----------------------RSIP----TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       147 ----------------------~~iP----Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                            .++|    |+++-++|+++.++.|..+.+++.+.|+++|+
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  1223    34444899999999999999999999998873

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.40  E-value=2.8e-12  Score=95.02  Aligned_cols=94  Identities=32%  Similarity=0.636  Sum_probs=73.7

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCC---------------------
Q 030165           81 VTDSSWENLVISSENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDS---------------------  137 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~---------------------  137 (182)
                      .++..+.- ....+++++|+||+. ||++|+...|.+.++.+.|..+ +.++.|..+.+                     
T Consensus        16 ~~g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~   94 (146)
T PF08534_consen   16 LDGKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD   94 (146)
T ss_dssp             TTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred             CCCCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence            44444443 224689999999999 9999999999999999987654 88888876544                     


Q ss_pred             hHHHHHcCCC---------cccEEEEE-ECCeEEEEEEcCCC--HHHHHH
Q 030165          138 PNIATKYGIR---------SIPTVLFF-KNGEKKESIIGAVP--KSTLSS  175 (182)
Q Consensus       138 ~~l~~~~~I~---------~iPTl~~f-~~G~~v~~~~G~~~--~~~l~~  175 (182)
                      ..+.++|++.         ++|+++++ ++|+++....|..+  .+++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~  144 (146)
T PF08534_consen   95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA  144 (146)
T ss_dssp             SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred             HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence            3578889998         99988777 69999999999877  344443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.40  E-value=2.7e-12  Score=103.00  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-h---HHH-HHc
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-P---NIA-TKY  144 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~---~l~-~~~  144 (182)
                      +..++++.+.. ..-.++++||.||++||++|+...|.|.+++++|.++ +.++.|++++       . .   +.+ +++
T Consensus        84 l~d~~G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~  162 (236)
T PLN02399         84 VKDIDGKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF  162 (236)
T ss_pred             EECCCCCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence            34455544432 2225789999999999999999999999999999754 8888888641       1 1   222 232


Q ss_pred             C----------------------------------CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          145 G----------------------------------IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       145 ~----------------------------------I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +                                  |+..|+.+++ ++|+++.++.|..+++++++.|+++|+
T Consensus       163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence            2                                  1234777777 799999999999999999999999884

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.37  E-value=4.6e-12  Score=91.93  Aligned_cols=75  Identities=19%  Similarity=0.443  Sum_probs=63.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------------DSPNIATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~  144 (182)
                      .++++||+||+.||++|+...|.|+++++++.+ .+.++.|+.+                           ....+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            578999999999999999999999999999974 4788877542                           222467779


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcC
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGA  167 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~  167 (182)
                      ++.++|+++++ ++|+++..+.|.
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            99999999999 589999998885

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.32  E-value=9.7e-12  Score=85.91  Aligned_cols=87  Identities=48%  Similarity=1.058  Sum_probs=75.6

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcC--CCcccEEEEEECCeEEEEEEc--CC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYG--IRSIPTVLFFKNGEKKESIIG--AV  168 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~--I~~iPTl~~f~~G~~v~~~~G--~~  168 (182)
                      ++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ...++...|+  +..+|+++++.+|+.+....+  ..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  111 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL  111 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence            789999999999999999999999999999877999999997 8899999999  999999999999987777766  56


Q ss_pred             CHHHHHHHHHHH
Q 030165          169 PKSTLSSTLDKY  180 (182)
Q Consensus       169 ~~~~l~~~l~~~  180 (182)
                      +...+......+
T Consensus       112 ~~~~~~~~~~~~  123 (127)
T COG0526         112 PKEALIDALGEL  123 (127)
T ss_pred             CHHHHHHHhcch
Confidence            666666555443

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.30  E-value=1.6e-11  Score=94.98  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEE------EEEeCCCC----------------------------
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVAC------FKLNTDDS----------------------------  137 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~------~~vd~d~~----------------------------  137 (182)
                      -.+|+.||.|||.||++|++.+|.++++.++   ++.+      +.||.|+.                            
T Consensus        57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            3599999999999999999999999999643   2445      56666542                            


Q ss_pred             -hHHHHHcCCCcccEE-EEE-ECCeEEEEEEcCCCHHHHHHH
Q 030165          138 -PNIATKYGIRSIPTV-LFF-KNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       138 -~~l~~~~~I~~iPTl-~~f-~~G~~v~~~~G~~~~~~l~~~  176 (182)
                       ..+...||+.++|+. +++ ++|+++.++.|.++.+++.+.
T Consensus       134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~  175 (184)
T TIGR01626       134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV  175 (184)
T ss_pred             cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence             235678999999865 455 799999999999998877663

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.30  E-value=1.1e-11  Score=90.78  Aligned_cols=80  Identities=16%  Similarity=0.252  Sum_probs=58.2

Q ss_pred             HHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE-ECCeEEEE
Q 030165           88 NLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKES  163 (182)
Q Consensus        88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~  163 (182)
                      +.+.+++|+++|+|+++||++|+++...+   .++.+....++..+.++.|....-....+ .++||++|+ .+|+++.+
T Consensus        17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~   95 (130)
T cd02960          17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRAD   95 (130)
T ss_pred             HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccc
Confidence            44567899999999999999999999865   45566565556666777653211111234 689999999 59999998


Q ss_pred             EEcCC
Q 030165          164 IIGAV  168 (182)
Q Consensus       164 ~~G~~  168 (182)
                      +.|..
T Consensus        96 i~Gy~  100 (130)
T cd02960          96 ITGRY  100 (130)
T ss_pred             ccccc
Confidence            88865

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>smart00594 UAS UAS domain

Probab=99.29  E-value=4.5e-11  Score=86.65  Aligned_cols=93  Identities=11%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             hHHHHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEE-CC
Q 030165           85 SWENLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFK-NG  158 (182)
Q Consensus        85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~-~G  158 (182)
                      +-.+.+.+.+|+++|+|+++||++|+.+...+   .++.+.+..++.++.+|.+.  ..+++++|+++++|+++++. +|
T Consensus        18 ~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       18 AAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             HHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence            33343556789999999999999999998754   56667777678887888764  45689999999999999994 55


Q ss_pred             -----eEEEEEEcCCCHHHHHHHH
Q 030165          159 -----EKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       159 -----~~v~~~~G~~~~~~l~~~l  177 (182)
                           +.+.++.|..++++|...|
T Consensus        98 g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       98 GQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             CceeEEEeccccCCCCHHHHHHhh
Confidence                 3567888999999998876

>PLN02412 probable glutathione peroxidase

Probab=99.29  E-value=3.1e-11  Score=92.09  Aligned_cols=90  Identities=14%  Similarity=0.214  Sum_probs=72.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-hHH----HHHcC--------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-PNI----ATKYG--------------  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~~l----~~~~~--------------  145 (182)
                      .++++||.||++||++|+...|.|.++.++|.++ +.++.|+.+.       . .++    .++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            4689999999999999999999999999999854 8889888642       1 121    12211              


Q ss_pred             --------------------CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          146 --------------------IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       146 --------------------I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                          |...|+.+++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                3345887777 799999999999999999999999874

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.28  E-value=2.7e-11  Score=94.19  Aligned_cols=84  Identities=23%  Similarity=0.428  Sum_probs=63.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--------------------CChHHHHHcCCCcccEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--------------------DSPNIATKYGIRSIPTV  152 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--------------------~~~~l~~~~~I~~iPTl  152 (182)
                      .+++++|+||++||++|+.+.|.+.++.+++..  .++.++.+                    ...++.+.|++.++|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            578999999999999999999999999877643  34444321                    13467788999999987


Q ss_pred             EEE-ECCeEEEEEEcC-CCHHHHHHHHHHH
Q 030165          153 LFF-KNGEKKESIIGA-VPKSTLSSTLDKY  180 (182)
Q Consensus       153 ~~f-~~G~~v~~~~G~-~~~~~l~~~l~~~  180 (182)
                      +++ ++|+...+  |. ...++++++++.+
T Consensus       151 ~lID~~G~I~~~--g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       151 VLLDQDGKIRAK--GLTNTREHLESLLEAD  178 (189)
T ss_pred             EEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence            777 58877664  43 4567777777643

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.27  E-value=1.3e-11  Score=108.51  Aligned_cols=102  Identities=19%  Similarity=0.469  Sum_probs=80.9

Q ss_pred             EEcChh-hHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcc
Q 030165           79 QVVTDS-SWENLVIS-SENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP----NIATKYGIRSI  149 (182)
Q Consensus        79 ~~l~~~-~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I~~i  149 (182)
                      +.++.. +.++...+ .+|||+|||||+||-.||.+++..   .+...+.. ++...+.|.+++.    ++.++||+-++
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            344444 67764433 345999999999999999999874   23444444 4889999987654    47899999999


Q ss_pred             cEEEEEE-CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFK-NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~-~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++++|. +|++.....|.++++.+.+++++..
T Consensus       536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence            9999996 8988888999999999999998853

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.26  E-value=9.1e-11  Score=89.42  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=72.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCC-------h----------------------HHHH
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDS-------P----------------------NIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~-------~----------------------~l~~  142 (182)
                      .++++||+||++||+.|....+.+.++.+++. .++.++.++.|..       .                      .+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            57899999999999999999999999999997 4699999987642       1                      3567


Q ss_pred             HcCCCcccEEEEE-ECCeEEEEEE---------cCCCHHHHHHHHHHHhC
Q 030165          143 KYGIRSIPTVLFF-KNGEKKESII---------GAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       143 ~~~I~~iPTl~~f-~~G~~v~~~~---------G~~~~~~l~~~l~~~l~  182 (182)
                      .|+|..+|+++++ ++|+++....         +..+.+++.+.|+.+|.
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  153 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA  153 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence            8999999999999 4888775531         22456889999988763

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.26  E-value=5.1e-11  Score=89.36  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC--------CCCh---HHHHH-cCC-------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNT--------DDSP---NIATK-YGI-------------  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~--------d~~~---~l~~~-~~I-------------  146 (182)
                      .++++||.||++||++|+...|.+.++.++|.+ .+.++.++.        +...   +.+++ +++             
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            578899999999999999999999999999975 588888884        1111   22322 221             


Q ss_pred             -------------CcccE-----EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          147 -------------RSIPT-----VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       147 -------------~~iPT-----l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                   .++|+     +++-++|+.+.++.|..+.+++.+.|+++|
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~  153 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV  153 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence                         13784     555589999999999999999999998875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.20  E-value=5.6e-11  Score=80.14  Aligned_cols=67  Identities=27%  Similarity=0.526  Sum_probs=54.1

Q ss_pred             HHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           89 LVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        89 ~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .+.+++++++|+|+++||++|+.+...+   .++.+.+.+++.++.+|.++.......++ .++|+++++.
T Consensus        12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld   81 (82)
T PF13899_consen   12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD   81 (82)
T ss_dssp             HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred             HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence            3567899999999999999999999887   56666566779999999987665443222 7799999985

...

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.15  E-value=1.3e-10  Score=87.14  Aligned_cols=83  Identities=18%  Similarity=0.309  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHH-cC--------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S----PNIATK-YG--------------  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~----~~l~~~-~~--------------  145 (182)
                      .+++|||.||++||+ |+...|.|++++++|.+ .+.++.|+.+.       .    .+.+++ ++              
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~   99 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE   99 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence            478999999999999 99999999999999974 58888887542       1    123332 22              


Q ss_pred             ---------CCccc-----------EEEEE-ECCeEEEEEEcCCCHHHHHHH
Q 030165          146 ---------IRSIP-----------TVLFF-KNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       146 ---------I~~iP-----------Tl~~f-~~G~~v~~~~G~~~~~~l~~~  176 (182)
                               +.++|           |.+++ ++|+++.++.|..+.+++++.
T Consensus       100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340         100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence                     23466           45555 799999999999998887654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.14  E-value=2.2e-10  Score=85.77  Aligned_cols=72  Identities=24%  Similarity=0.549  Sum_probs=61.5

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCCCCh-------------------------HHHHH
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSP-------------------------NIATK  143 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~-------------------------~l~~~  143 (182)
                      -.++.|.++|-|.||++||.|.|++.++.++....   +.++.|+.|.+.                         ++..+
T Consensus        31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k  110 (157)
T KOG2501|consen   31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK  110 (157)
T ss_pred             hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence            35799999999999999999999999999988776   888888887554                         37788


Q ss_pred             cCCCcccEEEEEE-CCeEEEE
Q 030165          144 YGIRSIPTVLFFK-NGEKKES  163 (182)
Q Consensus       144 ~~I~~iPTl~~f~-~G~~v~~  163 (182)
                      |+|.++|++++.+ +|..+..
T Consensus       111 y~v~~iP~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen  111 YEVKGIPALVILKPDGTVVTE  131 (157)
T ss_pred             cccCcCceeEEecCCCCEehH
Confidence            9999999999996 8877653

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.13  E-value=6.2e-10  Score=86.08  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             CCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------C-hH---H-HHH---------------
Q 030165           93 SENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------S-PN---I-ATK---------------  143 (182)
Q Consensus        93 ~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------~-~~---l-~~~---------------  143 (182)
                      .++++ |+.|||+||++|+...|.|+++.++|.+ .+.++.++++.       . .+   . .++               
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g  118 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG  118 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence            46654 5667999999999999999999999975 48888887531       0 11   1 112               


Q ss_pred             ---------------------cCCCcccE----EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          144 ---------------------YGIRSIPT----VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       144 ---------------------~~I~~iPT----l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                           +++.++|+    +++-++|+++.++.|..+.+++.+.|+++|+
T Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence                                 13457894    5555799999999999999999999998874

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=9e-10  Score=82.03  Aligned_cols=89  Identities=21%  Similarity=0.435  Sum_probs=76.8

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC----------------ChHHHHHcCCCccc
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD----------------SPNIATKYGIRSIP  150 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~----------------~~~l~~~~~I~~iP  150 (182)
                      +...++..++.|-.+.|.+|..+...+   +++.+.+.+++.++.+++..                ..+|++.|+|+++|
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP  117 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP  117 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence            556899999999999999999999886   56777777888899888742                23799999999999


Q ss_pred             EEEEEE-CCeEEEEEEcCCCHHHHHHHHH
Q 030165          151 TVLFFK-NGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       151 Tl~~f~-~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      |+++|+ +|+.+....|.++++++...++
T Consensus       118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         118 TFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            999994 8999999999999999987765

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.11  E-value=5.8e-10  Score=72.32  Aligned_cols=69  Identities=19%  Similarity=0.490  Sum_probs=54.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      +..||++||++|+...+.|++.      ++.+..+|++++++    +.+++++.++|++++.  |+.   +.| .+++.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence            5689999999999999888762      48888999987765    4567999999999874  643   666 577888


Q ss_pred             HHHHH
Q 030165          174 SSTLD  178 (182)
Q Consensus       174 ~~~l~  178 (182)
                      .++|+
T Consensus        70 ~~~i~   74 (74)
T TIGR02196        70 DQLLE   74 (74)
T ss_pred             HHHhC
Confidence            88763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.09  E-value=1.1e-09  Score=80.32  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCCcc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~i  149 (182)
                      .+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..|.                     ...+++.||+...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            3789999999 58999999999999999988864 47788776643                     3357778999888


Q ss_pred             ---------cEEEEEE-CCeEEEEEEcCCCHHHHHHHH
Q 030165          150 ---------PTVLFFK-NGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       150 ---------PTl~~f~-~G~~v~~~~G~~~~~~l~~~l  177 (182)
                               |+++++. +|+++..+.|..+.+.+.+.+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence                     8888885 899999999999888777655

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=99.07  E-value=8.3e-10  Score=90.10  Aligned_cols=103  Identities=21%  Similarity=0.413  Sum_probs=78.1

Q ss_pred             cCccEEcC-hhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVT-DSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~-~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      -+.+.+++ +++|.+.+.+.  +..|||+||.+.++.|..|...|..+|++|+. ++|++|..+..+ +..+|.+..+||
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt  201 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT  201 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence            46778885 47787755443  34699999999999999999999999999986 999999998776 788999999999


Q ss_pred             EEEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165          152 VLFFKNGEKKESIIGAV-------PKSTLSSTLDK  179 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~-------~~~~l~~~l~~  179 (182)
                      +++|++|..++.++|..       ..++|+.+|.+
T Consensus       202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~  236 (265)
T PF02114_consen  202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE  236 (265)
T ss_dssp             EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred             EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence            99999999999998743       34566666654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.07  E-value=5e-10  Score=86.08  Aligned_cols=91  Identities=27%  Similarity=0.491  Sum_probs=80.6

Q ss_pred             CccEEcC-hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           76 NEVQVVT-DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        76 ~~v~~l~-~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +...++. ..+|-+.. ....-||++||-+.-..|+.|...|+.+++.+-+ .+|++||.+..+-++.+++|+.+|++++
T Consensus        66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            4556665 67787744 4455789999999999999999999999999986 8999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCC
Q 030165          155 FKNGEKKESIIGAV  168 (182)
Q Consensus       155 f~~G~~v~~~~G~~  168 (182)
                      |+||+.++++.|..
T Consensus       144 ~k~g~~~D~iVGF~  157 (211)
T KOG1672|consen  144 FKNGKTVDYVVGFT  157 (211)
T ss_pred             EEcCEEEEEEeeHh
Confidence            99999999999864

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=8.9e-10  Score=86.19  Aligned_cols=92  Identities=23%  Similarity=0.452  Sum_probs=75.7

Q ss_pred             cCccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCC----
Q 030165           75 VNEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIR----  147 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~----  147 (182)
                      ++.+.-++..+......+  ....++|.|+|-|.+.|+.+.|.|.++..+|.. .++|.+||+..-++.+++|+|.    
T Consensus       123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~  202 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG  202 (265)
T ss_pred             chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence            456677744433333333  445689999999999999999999999999974 5999999999999999999985    


Q ss_pred             --cccEEEEEECCeEEEEEEc
Q 030165          148 --SIPTVLFFKNGEKKESIIG  166 (182)
Q Consensus       148 --~iPTl~~f~~G~~v~~~~G  166 (182)
                        ..||+++|++|+++.|...
T Consensus       203 srQLPT~ilFq~gkE~~RrP~  223 (265)
T KOG0914|consen  203 SRQLPTYILFQKGKEVSRRPD  223 (265)
T ss_pred             cccCCeEEEEccchhhhcCcc
Confidence              6999999999999987653

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.95  E-value=1.3e-09  Score=71.73  Aligned_cols=70  Identities=20%  Similarity=0.457  Sum_probs=51.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-----CCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY-----GIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~-----~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                      ++.||++||++|+++++.|++..      +.+..+|+++++...+.+     ++.++|++ ++.+|+.+.    ..+..+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~   70 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ   70 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence            67899999999999999987663      455678888877766663     89999997 577775433    345556


Q ss_pred             HHHHHH
Q 030165          173 LSSTLD  178 (182)
Q Consensus       173 l~~~l~  178 (182)
                      +.+.|+
T Consensus        71 ~~~~l~   76 (77)
T TIGR02200        71 VKAKLQ   76 (77)
T ss_pred             HHHHhh
Confidence            665553

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.95  E-value=5.3e-09  Score=64.32  Aligned_cols=60  Identities=33%  Similarity=0.783  Sum_probs=52.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEECC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT---KYGIRSIPTVLFFKNG  158 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~---~~~I~~iPTl~~f~~G  158 (182)
                      ++.||+.||++|+.+.+.++++ +....++.+..++.+...+...   .+++.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999998 5556679999999998887654   8999999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.95  E-value=1.1e-08  Score=67.98  Aligned_cols=73  Identities=26%  Similarity=0.560  Sum_probs=57.6

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEc-CCCHHHHHHHH
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG-AVPKSTLSSTL  177 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G-~~~~~~l~~~l  177 (182)
                      |.++.++|++|..+...+++++..++  +.+-.+|.++.+++ .+|||.++|++++  ||+.  ++.| ..+.++|.+||
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l   75 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELL   75 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence            34478889999999999999999984  66666677666666 9999999999966  8975  6778 67788999888


Q ss_pred             H
Q 030165          178 D  178 (182)
Q Consensus       178 ~  178 (182)
                      +
T Consensus        76 ~   76 (76)
T PF13192_consen   76 E   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            5

...

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.92  E-value=1.5e-08  Score=75.78  Aligned_cols=87  Identities=17%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~i  149 (182)
                      .++++||+||+. ||+.|....+.+.++.+++.+ ++.++.|+.|.                     ...+++.||+...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            578999999976 688899999999999988864 47888887643                     2347778888654


Q ss_pred             ------------cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          150 ------------PTVLFF-KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       150 ------------PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                  |+.+++ ++|+++..+.|....+.+.+.++.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~  151 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY  151 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence                        566666 699999999998777665554443

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.91  E-value=2.1e-08  Score=79.62  Aligned_cols=83  Identities=19%  Similarity=0.400  Sum_probs=69.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------CChHHHHHcCCCcccEEEEEE-CC-e
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------DSPNIATKYGIRSIPTVLFFK-NG-E  159 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------~~~~l~~~~~I~~iPTl~~f~-~G-~  159 (182)
                      .++.-|++||.+.|++|+.+.|+++.++++|.  +.++.|+.|           .+..+++++||..+|+++++. ++ +
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            47788999999999999999999999999995  677777776           357899999999999999995 44 4


Q ss_pred             EEEEEEcCCCHHHHHHHH
Q 030165          160 KKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       160 ~v~~~~G~~~~~~l~~~l  177 (182)
                      ...--.|.++.++|.+-|
T Consensus       197 ~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EEEEeeecCCHHHHHHhh
Confidence            444556999999988754

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.90  E-value=5.3e-09  Score=76.65  Aligned_cols=95  Identities=21%  Similarity=0.443  Sum_probs=56.9

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEE-
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY---GIRSIPTVLFFK-  156 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~---~I~~iPTl~~f~-  156 (182)
                      ++++....+.....+.-++.|..+|||.|+..-|.|.++++..+ ++.+-.+..|++.++.++|   |.++|||++++. 
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            45555554333456668899999999999999999999999876 4777777778887776654   788999999995 


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHH
Q 030165          157 NGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      +|+++.++.. .+ +.+.++++
T Consensus       107 ~~~~lg~wge-rP-~~~~~~~~  126 (129)
T PF14595_consen  107 DGKELGRWGE-RP-KEVQELVD  126 (129)
T ss_dssp             T--EEEEEES-S--HHHH----
T ss_pred             CCCEeEEEcC-CC-HHHhhccc
Confidence            6787777743 33 33444443

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.88  E-value=3.3e-08  Score=75.58  Aligned_cols=88  Identities=15%  Similarity=0.261  Sum_probs=67.9

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| +.||++|....+.|.++++++.. ++.++.|..|.                            ...+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            4689999999 89999999999999999999864 47777776543                            224667


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      .+|+.+++ ++|+++..+.+..    +.+++.+.|+++
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78886      57888888 5999988887654    466777777654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.86  E-value=2e-08  Score=76.05  Aligned_cols=98  Identities=17%  Similarity=0.376  Sum_probs=65.0

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHHc--------CCCcc
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATKY--------GIRSI  149 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~~--------~I~~i  149 (182)
                      .+++.++. +.+++|+++|+++.+||..|+.|... |  .++++.++.++.-++||.++.+++...|        |..++
T Consensus        25 w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw  103 (163)
T PF03190_consen   25 WGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW  103 (163)
T ss_dssp             SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred             CCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence            34555665 77889999999999999999999864 4  5688888878899999999999998888        88999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCCH------HHHHHHHHHH
Q 030165          150 PTVLFF-KNGEKKESIIGAVPK------STLSSTLDKY  180 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~~------~~l~~~l~~~  180 (182)
                      |+.+|+ .+|+.+.. ....++      ..|.+.|+++
T Consensus       104 Pl~vfltPdg~p~~~-~tY~P~~~~~g~~~f~~~l~~i  140 (163)
T PF03190_consen  104 PLTVFLTPDGKPFFG-GTYFPPEDRYGRPGFLQLLERI  140 (163)
T ss_dssp             SEEEEE-TTS-EEEE-ESS--SS-BTTB--HHHHHHHH
T ss_pred             CceEEECCCCCeeee-eeecCCCCCCCCccHHHHHHHH
Confidence            998888 48876554 333333      3566666554

; PDB: 3IRA_A.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.86  E-value=2.2e-08  Score=76.30  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~~  148 (182)
                      .++++||+||+.| |++|....|.|.++++++. ++.++.|+.|.                       ...+++.||+..
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~  121 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI  121 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence            4789999999999 9999999999999999985 57888776642                       225778899988


Q ss_pred             cc---------EEEEE-ECCeEEEEEEc
Q 030165          149 IP---------TVLFF-KNGEKKESIIG  166 (182)
Q Consensus       149 iP---------Tl~~f-~~G~~v~~~~G  166 (182)
                      .|         +.+++ ++|+++....+
T Consensus       122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~  149 (167)
T PRK00522        122 AEGPLKGLLARAVFVLDENNKVVYSELV  149 (167)
T ss_pred             cccccCCceeeEEEEECCCCeEEEEEEC
Confidence            77         77777 59998888764

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.86  E-value=3.7e-08  Score=72.87  Aligned_cols=83  Identities=14%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             CcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------CC--hHHHHHcCCCc-
Q 030165           95 NPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------DS--PNIATKYGIRS-  148 (182)
Q Consensus        95 ~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------~~--~~l~~~~~I~~-  148 (182)
                      ++++|.|| +.||+.|....|.++++++++.+ ++.++.|+.|                     ..  ..+++.||+.. 
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            78888887 99999999999999999999863 5777777653                     23  45778888873 


Q ss_pred             ---cc--EEEEE-ECCeEEEEEEcCC----CHHHHHHHH
Q 030165          149 ---IP--TVLFF-KNGEKKESIIGAV----PKSTLSSTL  177 (182)
Q Consensus       149 ---iP--Tl~~f-~~G~~v~~~~G~~----~~~~l~~~l  177 (182)
                         +|  +++++ ++|+.+..+.|..    +..++.+.|
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  147 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL  147 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence               33  66677 5999999998865    344454444

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.85  E-value=8.2e-08  Score=69.09  Aligned_cols=94  Identities=13%  Similarity=0.089  Sum_probs=73.1

Q ss_pred             HHHHcCCCcEEEEEEcC----CChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE---E-C
Q 030165           88 NLVISSENPVLVEFWAP----WCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFF---K-N  157 (182)
Q Consensus        88 ~~~~~~~~~vlV~F~a~----wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f---~-~  157 (182)
                      +...++.|.++|+++++    ||..|+..... +++.+.+..++.++..|++..  .+++..++++++|+++++   . +
T Consensus        11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~   89 (116)
T cd02991          11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR   89 (116)
T ss_pred             HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence            33567899999999999    89999655311 344444455688888888754  568999999999999998   2 3


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .+.+.++.|..++++|...|...++
T Consensus        90 ~~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          90 MTIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             eEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            4568899999999999999988763

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.85  E-value=6.4e-10  Score=87.76  Aligned_cols=99  Identities=24%  Similarity=0.543  Sum_probs=87.1

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .+..+++++|..++   ..-.+++|+|+||+.|+...|.++.++.--.+ .+.+.+||+..++.+..+|-|...|||...
T Consensus        25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv  101 (248)
T KOG0913|consen   25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV  101 (248)
T ss_pred             eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence            58899999999954   35679999999999999999999998854333 489999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +||. -.++.|+.+.+++..+++.
T Consensus       102 kDGe-FrrysgaRdk~dfisf~~~  124 (248)
T KOG0913|consen  102 KDGE-FRRYSGARDKNDFISFEEH  124 (248)
T ss_pred             eccc-cccccCcccchhHHHHHHh
Confidence            9995 5789999999999998864

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.84  E-value=2.6e-08  Score=71.18  Aligned_cols=70  Identities=31%  Similarity=0.747  Sum_probs=59.2

Q ss_pred             CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------hHHHHHcCCC--
Q 030165           93 SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------PNIATKYGIR--  147 (182)
Q Consensus        93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~I~--  147 (182)
                      .+++++|.||+. ||+.|+...+.+.++.++++. ++.++.|..|..                     .++++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            579999999999 999999999999999999875 489999987543                     3578889999  


Q ss_pred             ----cccEEEEEE-CCeEEE
Q 030165          148 ----SIPTVLFFK-NGEKKE  162 (182)
Q Consensus       148 ----~iPTl~~f~-~G~~v~  162 (182)
                          .+|+++++. +|+++.
T Consensus       104 ~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             TTSEESEEEEEEETTSBEEE
T ss_pred             cCCceEeEEEEECCCCEEEe
Confidence                999998885 676653

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.84  E-value=3.1e-08  Score=72.98  Aligned_cols=84  Identities=11%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----------------------PNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----------------------~~l~~~~~I~~  148 (182)
                      .++++||+||+.| |++|+...+.|+++.+++. ++.++.|+.|..                       ..+++.||+..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  103 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI  103 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence            4789999999998 6999999999999999986 588888887531                       34667788763


Q ss_pred             ------ccEEEEE-ECCeEEEEEEcCC--CHHHHHHHH
Q 030165          149 ------IPTVLFF-KNGEKKESIIGAV--PKSTLSSTL  177 (182)
Q Consensus       149 ------iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l  177 (182)
                            .|+.+++ ++|+++....|..  ...++.+.|
T Consensus       104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~  141 (143)
T cd03014         104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL  141 (143)
T ss_pred             ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence                  6887777 5999999888753  344555544

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR03137 AhpC peroxiredoxin

Probab=98.81  E-value=7.6e-08  Score=74.67  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~  145 (182)
                      .++++||+|| +.||++|....+.|.++.+++.+ .+.++.|..|.                         ...+++.||
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            4689999999 99999999999999999988853 46777776553                         225778899


Q ss_pred             CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHH
Q 030165          146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDK  179 (182)
Q Consensus       146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~  179 (182)
                      |.      ..|+.+++ ++|++.....+..    +.+++.+.|+.
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            86      46877777 5999888775432    56666666643

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.81  E-value=2.4e-08  Score=77.35  Aligned_cols=89  Identities=13%  Similarity=0.264  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC--------Ch---HHHH-HcCCC------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD--------SP---NIAT-KYGIR------------  147 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~--------~~---~l~~-~~~I~------------  147 (182)
                      .++++||.|||+||++|++ .+.|+++.++|.+ .+.++.+.+++        ..   +.++ +|++.            
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~  102 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE  102 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence            4799999999999999975 7799999999975 48888887742        12   2343 45543            


Q ss_pred             -----------ccc--------------------------------EEEEEECCeEEEEEEcCCCHHH--HHHHHHHHhC
Q 030165          148 -----------SIP--------------------------------TVLFFKNGEKKESIIGAVPKST--LSSTLDKYVE  182 (182)
Q Consensus       148 -----------~iP--------------------------------Tl~~f~~G~~v~~~~G~~~~~~--l~~~l~~~l~  182 (182)
                                 ..|                                .+++-++|+.+.|+.....+.+  |++.|+++|+
T Consensus       103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l~  182 (183)
T PRK10606        103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLALA  182 (183)
T ss_pred             CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence                       233                                3455589999999988777666  9999998873

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.79  E-value=7e-08  Score=71.06  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=54.5

Q ss_pred             CCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------hHHHHHcCCC---
Q 030165           94 ENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------PNIATKYGIR---  147 (182)
Q Consensus        94 ~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~I~---  147 (182)
                      ++++ |++||+.||++|+...+.|.++.+++.+ .+.++.|+.+..                     ..+.+.||+.   
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~  102 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL  102 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence            3454 5555699999999999999999999853 488888877543                     3466778884   


Q ss_pred             --------------------------cccEEEEEE-CCeEEEEEEc
Q 030165          148 --------------------------SIPTVLFFK-NGEKKESIIG  166 (182)
Q Consensus       148 --------------------------~iPTl~~f~-~G~~v~~~~G  166 (182)
                                                .+|+.+++. +|++...+.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970         103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence                                      688888884 7777666554

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.77  E-value=1.4e-07  Score=76.54  Aligned_cols=87  Identities=18%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----------hHHHHHcCCCcccEEEEEE-C-Ce
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----------PNIATKYGIRSIPTVLFFK-N-GE  159 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----------~~l~~~~~I~~iPTl~~f~-~-G~  159 (182)
                      .++.-|++||.+.|++|.++.|+++.++++|+  +.++.|++|..           ..+++++||..+|+++++. + ++
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            46688999999999999999999999999997  66667776654           4589999999999999985 4 44


Q ss_pred             EEEEEEcCCCHHHHHHHHHHHh
Q 030165          160 KKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       160 ~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ..---.|.++.++|.+-|...+
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence            4445569999999998877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.77  E-value=2.7e-08  Score=66.52  Aligned_cols=59  Identities=19%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-----HHHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-----IATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-----l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      |+.|+++||++|+.+.+.++++.  .++++.++.+|.+++..     +.+.+|+.++|++++  +|+.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~   64 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKF   64 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence            57899999999999999999986  33447788888775543     667789999999843  7754

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.75  E-value=7.5e-08  Score=77.27  Aligned_cols=81  Identities=19%  Similarity=0.356  Sum_probs=62.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN---------------------------------------  133 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd---------------------------------------  133 (182)
                      +++.+++.|..+.|++|+++.+.++++.+.   .+.+..+.                                       
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            467789999999999999999998877541   23333221                                       


Q ss_pred             -----CCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          134 -----TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       134 -----~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                           ++++.++++++||+++||++ |.||+.+   .|..++++|.++|++.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence                 12334588999999999998 7789754   8999999999999864

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.73  E-value=1.1e-07  Score=68.66  Aligned_cols=75  Identities=24%  Similarity=0.514  Sum_probs=52.8

Q ss_pred             hhHHHHHH---cCCCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHH--Hc
Q 030165           84 SSWENLVI---SSENPVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIAT--KY  144 (182)
Q Consensus        84 ~~~~~~~~---~~~~~vlV~F~a-------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~--~~  144 (182)
                      ++|.+.+.   .++++++|+|++       +||+.|+...|.+++.-...+++..++.+.+.+       +...-.  ++
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~   85 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL   85 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence            45555553   356889999985       599999999999999888887788999888743       223333  49


Q ss_pred             CCCcccEEEEEECC
Q 030165          145 GIRSIPTVLFFKNG  158 (182)
Q Consensus       145 ~I~~iPTl~~f~~G  158 (182)
                      +|++|||++-+..+
T Consensus        86 ~l~~IPTLi~~~~~   99 (119)
T PF06110_consen   86 KLKGIPTLIRWETG   99 (119)
T ss_dssp             ---SSSEEEECTSS
T ss_pred             eeeecceEEEECCC
Confidence            99999999999766

; PDB: 1V9W_A 1WOU_A.

>KOG3414 consensus Component of the U4/U6

Probab=98.72  E-value=3.4e-07  Score=65.87  Aligned_cols=98  Identities=17%  Similarity=0.397  Sum_probs=81.3

Q ss_pred             ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           82 TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        82 ~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +....+..+. .+++.|||.|...|-+.|.+|...|.+++++..+-..++-+|+|+.+++.+-|++...||+++|-|++-
T Consensus        10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            4455555444 468899999999999999999999999999998888899999999999999999999999999988876


Q ss_pred             EEEEEcC----------CCHHHHHHHHHH
Q 030165          161 KESIIGA----------VPKSTLSSTLDK  179 (182)
Q Consensus       161 v~~~~G~----------~~~~~l~~~l~~  179 (182)
                      +.-..|.          .+++++.+.++-
T Consensus        90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~  118 (142)
T KOG3414|consen   90 MKIDLGTGDNNKINFAFEDKQEFIDIIET  118 (142)
T ss_pred             EEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence            6644442          356777777764

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.71  E-value=1.2e-07  Score=69.23  Aligned_cols=77  Identities=19%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------ChHHHHHcCCCc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------~~~l~~~~~I~~  148 (182)
                      .+++++|.|| +.||+.|....+.+.++.+++. +.+.++.|..|.                      ...+++.||+..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~  100 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI  100 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence            5889999999 7899999999999999999884 357888777643                      224677788887


Q ss_pred             cc---------EEEEE-ECCeEEEEEEcCCC
Q 030165          149 IP---------TVLFF-KNGEKKESIIGAVP  169 (182)
Q Consensus       149 iP---------Tl~~f-~~G~~v~~~~G~~~  169 (182)
                      .|         +++++ ++|+.+.++.|...
T Consensus       101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971         101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            66         66666 58999999998765

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.2e-08  Score=80.24  Aligned_cols=81  Identities=25%  Similarity=0.514  Sum_probs=75.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                      .++.+++.||++|+.+|+++..+++.+++.. .++.|++++.++.+++++.+.|.+.|.+.++..|+.+.+..|..+...
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~   94 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL   94 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence            7889999999999999999999999999998 569999999999999999999999999999999999999999877654


Q ss_pred             HH
Q 030165          173 LS  174 (182)
Q Consensus       173 l~  174 (182)
                      ..
T Consensus        95 ~~   96 (227)
T KOG0911|consen   95 VS   96 (227)
T ss_pred             HH
Confidence            43

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.70  E-value=7.9e-08  Score=70.46  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcC----ceEEEEEeCCC
Q 030165           93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYAG----KVACFKLNTDD  136 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~~----~v~~~~vd~d~  136 (182)
                      .++++||.||++||++ |....+.+.++.+++.+    ++.++.|+.|.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            5789999999999998 99999999999998865    38888888753

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.68  E-value=3e-07  Score=72.23  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             CCCcEEE-EEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030165           93 SENPVLV-EFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATK  143 (182)
Q Consensus        93 ~~~~vlV-~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~  143 (182)
                      .++.++| .||+.||+.|....+.|.++++++.+ ++.++.++.|.                           +..+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            3566555 68999999999999999999988864 46777776552                           2357778


Q ss_pred             cCCC------cccEEEEEE-CCeEEEEE----EcCCCHHHHHHHHHHHh
Q 030165          144 YGIR------SIPTVLFFK-NGEKKESI----IGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~------~iPTl~~f~-~G~~v~~~----~G~~~~~~l~~~l~~~l  181 (182)
                      ||+.      .+|+++++. +|++....    .+..+.+++.+.|+.+.
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8884      589988884 88776655    33457888888887764

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.66  E-value=6.6e-07  Score=69.56  Aligned_cols=88  Identities=13%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~  145 (182)
                      .++++|+.|| +.||+.|....+.|.+..+++.+ ++.++.|+.|.                         +..+++.||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            4679999999 99999999999999999998853 46666666543                         346788899


Q ss_pred             C----Ccc--cEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          146 I----RSI--PTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       146 I----~~i--PTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      +    .++  |+.+++ ++|+++......    .+.+++.+.|+.+
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            8    356  988888 489887776542    3677777777654

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.64  E-value=7.2e-07  Score=67.90  Aligned_cols=107  Identities=21%  Similarity=0.414  Sum_probs=87.9

Q ss_pred             hhccCccEEcChhhHHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--c
Q 030165           72 REAVNEVQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--S  148 (182)
Q Consensus        72 ~~~~~~v~~l~~~~~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~  148 (182)
                      ...-..+.++|.+++.. +...+.+ +++.|..........+...++++++++.+++.|+.+|.+..+.+++.||+.  .
T Consensus        73 ~~~~P~v~~~t~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~  151 (184)
T PF13848_consen   73 KNSFPLVPELTPENFEK-LFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD  151 (184)
T ss_dssp             HHSSTSCEEESTTHHHH-HHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred             HhccccccccchhhHHH-HhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence            33446689999999998 5455655 888888777888888999999999999999999999999999999999998  8


Q ss_pred             ccEEEEEE--CCeEEEEEEcCCCHHHHHHHHHH
Q 030165          149 IPTVLFFK--NGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       149 iPTl~~f~--~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +|++++++  +++......|..+.+.+.+|++.
T Consensus       152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            99999997  44433334788899999999874

...

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.63  E-value=5.2e-07  Score=72.88  Aligned_cols=87  Identities=15%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEE-C-Ce
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------SPNIATKYGIRSIPTVLFFK-N-GE  159 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------~~~l~~~~~I~~iPTl~~f~-~-G~  159 (182)
                      .++.-|++||.+.|++|.++.|+++.++++|+  +.++.|++|.           +...++++||..+|+++++. + ++
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~  219 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS  219 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence            45688999999999999999999999999997  5555555543           23477899999999999995 3 45


Q ss_pred             EEEEEEcCCCHHHHHHHHHHHh
Q 030165          160 KKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       160 ~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ..---.|.++.++|.+-|....
T Consensus       220 ~~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        220 VRPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence            5556679999999988876553

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.62  E-value=4.4e-07  Score=61.35  Aligned_cols=76  Identities=14%  Similarity=0.309  Sum_probs=57.6

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcC--CCcccEEEEEECCeEEEEEEcCCCH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYG--IRSIPTVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~--I~~iPTl~~f~~G~~v~~~~G~~~~  170 (182)
                      -++.|+.+||++|+.....|+++..++. ++.+..+|++++.    ++.+.++  +.++|++++  ||+.+    |  .-
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--g~   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--GC   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--CH
Confidence            3778999999999999999999998764 4888899998653    4655555  589999864  88653    2  44


Q ss_pred             HHHHHHHHHHh
Q 030165          171 STLSSTLDKYV  181 (182)
Q Consensus       171 ~~l~~~l~~~l  181 (182)
                      ++|.++++..+
T Consensus        73 ~~~~~~~~~~~   83 (85)
T PRK11200         73 TDFEAYVKENL   83 (85)
T ss_pred             HHHHHHHHHhc
Confidence            66777776543

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.61  E-value=1.5e-07  Score=73.41  Aligned_cols=77  Identities=22%  Similarity=0.413  Sum_probs=57.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE----------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL----------------------------------------  132 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v----------------------------------------  132 (182)
                      +.+..++.|..++|++|+++.+.+++    ..+++.+..+                                        
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            46789999999999999999998876    1222332222                                        


Q ss_pred             -----eCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          133 -----NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       133 -----d~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                           +++++.++++++||+++||++ |.||+.   +.|..+.++|.++|
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence                 112333588899999999997 888875   57888988888764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.61  E-value=4e-07  Score=58.67  Aligned_cols=68  Identities=22%  Similarity=0.456  Sum_probs=50.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc----CCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY----GIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~----~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      ++.|+++||++|+.+...+++.      ++.+..+|++.+.+..+.+    ++.++|++++  +|   ..+.| .+.++|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g-~~~~~l   69 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSG-FRPDKL   69 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEec-CCHHHH
Confidence            5789999999999998888763      3677788888776655444    7899999976  55   24444 566677


Q ss_pred             HHHH
Q 030165          174 SSTL  177 (182)
Q Consensus       174 ~~~l  177 (182)
                      +++|
T Consensus        70 ~~~~   73 (73)
T cd02976          70 RALL   73 (73)
T ss_pred             HhhC
Confidence            7664

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK15000 peroxidase; Provisional

Probab=98.58  E-value=1.1e-06  Score=68.99  Aligned_cols=88  Identities=16%  Similarity=0.336  Sum_probs=68.0

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+||+ .||+.|....+.|.++++++.. ++.++.+.+|.                            ..++++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            47899999999 5999999999999999999863 46777776652                            224667


Q ss_pred             HcCCC------cccEEEEEE-CCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFFK-NGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f~-~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      ++|+.+++. +|++.....|..    +.+++.+.|+.+
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78887      799888885 999888877643    566777766653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.58  E-value=5.7e-07  Score=80.59  Aligned_cols=96  Identities=17%  Similarity=0.285  Sum_probs=79.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +....++.+..+. +..-++++ +-.|..++|++|......+++++...+ ++..-.+|..+.++++++|+|.++|++++
T Consensus       458 ~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i  535 (555)
T TIGR03143       458 GPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV  535 (555)
T ss_pred             CCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE
Confidence            4455666666665 55556676 445689999999999999999999987 59999999999999999999999999988


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                        ||+.+  +.|..+.+++.+||
T Consensus       536 --~~~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       536 --DDQQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             --CCEEE--EeeCCCHHHHHHhh
Confidence              88754  55888999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.54  E-value=3.8e-06  Score=61.10  Aligned_cols=97  Identities=15%  Similarity=0.340  Sum_probs=77.1

Q ss_pred             ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc-EEEEEECCe
Q 030165           82 TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP-TVLFFKNGE  159 (182)
Q Consensus        82 ~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iP-Tl~~f~~G~  159 (182)
                      +....++.+. +.++.|++.|..+|=+.|.++...+.+.+++...-..++.+|+++.+++-+-|.+. .| |+++|-+++
T Consensus         7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk   85 (133)
T PF02966_consen    7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK   85 (133)
T ss_dssp             SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred             ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence            4455666554 46899999999999999999999999999999988899999999999999999999 77 677777888


Q ss_pred             EEEEEEcC----------CCHHHHHHHHHH
Q 030165          160 KKESIIGA----------VPKSTLSSTLDK  179 (182)
Q Consensus       160 ~v~~~~G~----------~~~~~l~~~l~~  179 (182)
                      .+.-..|.          .++++|.+.++-
T Consensus        86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred             EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence            77655442          246777777764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.54  E-value=1.4e-06  Score=72.73  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhH-------HHHHHHHHhc-CceEEEEEeCCCChHHHHHcCC
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAP-------AIEELAKEYA-GKVACFKLNTDDSPNIATKYGI  146 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p-------~l~~~a~~~~-~~v~~~~vd~d~~~~l~~~~~I  146 (182)
                      ...+..++..||.+ +++....++|+|+.|- +.-+....       .++-.|+-+. ..+.|+.||...+..+++++|+
T Consensus        33 kDRVi~LneKNfk~-~lKkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   33 KDRVIDLNEKNFKR-ALKKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             S--CEEE-TTTHHH-HHHH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             ccceEEcchhHHHH-HHHhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            35689999999999 5566678888888876 33333322       2233333333 3499999999999999999999


Q ss_pred             CcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       147 ~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ...+++.+|++|+.+... |..+++.|..||-.+++
T Consensus       111 ~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~e  145 (383)
T PF01216_consen  111 EEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLE  145 (383)
T ss_dssp             -STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred             cccCcEEEEECCcEEEec-CccCHHHHHHHHHHhcc
Confidence            999999999999887665 99999999999988874

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.52  E-value=1.2e-06  Score=62.54  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=80.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHH---hcCceEEEEEeCCCChHHHHHcCCCc--ccEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKE---YAGKVACFKLNTDDSPNIATKYGIRS--IPTV  152 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~---~~~~v~~~~vd~d~~~~l~~~~~I~~--iPTl  152 (182)
                      |.+++.++... +..++.+..+.|+.+  ..=..+...+.+++++   +.+++.|+.+|.++....++.||++.  +|.+
T Consensus         1 ~~e~t~e~~~~-~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i   77 (111)
T cd03072           1 VREITFENAEE-LTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI   77 (111)
T ss_pred             CcccccccHHH-HhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence            35678888876 556777777777722  2236678899999999   99999999999999888999999997  8999


Q ss_pred             EEEECCe-EEEE-EEcCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGE-KKES-IIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~-~v~~-~~G~~~~~~l~~~l~~~l~  182 (182)
                      .+..... .... ..+..+.+.|++|++++++
T Consensus        78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            9996322 2222 5577899999999999874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=98.51  E-value=5.9e-07  Score=72.93  Aligned_cols=85  Identities=14%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      +.+.+|+.|..+.|++|+++...+.++.+.  +++.+..+..                                      
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~  193 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP  193 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence            456789999999999999999988877654  2344433321                                      


Q ss_pred             ------------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          135 ------------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       135 ------------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                  +++.++++++||+++|++++-.....+..+.|..++++|.++|..
T Consensus       194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~  250 (251)
T PRK11657        194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP  250 (251)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence                        011237788999999999888532355678899999999998753

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.49  E-value=9.1e-07  Score=65.16  Aligned_cols=80  Identities=31%  Similarity=0.535  Sum_probs=59.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--C----------------C-----------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--D----------------S-----------------  137 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~----------------~-----------------  137 (182)
                      ..+.+|+.|+.++|++|+.+.+.++++..+++ ++.++..+.-  .                .                 
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~   82 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGR   82 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC
Confidence            35778999999999999999999999887764 4544443320  0                0                 


Q ss_pred             ------------------------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          138 ------------------------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       138 ------------------------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                                                          .+++.++||.++||+++  ||+   .+.|..+.+.|.+.|+
T Consensus        83 ~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~  154 (154)
T cd03023          83 LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID  154 (154)
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence                                                02445689999999877  674   5789999999888764

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=98.49  E-value=9.7e-07  Score=62.45  Aligned_cols=95  Identities=18%  Similarity=0.309  Sum_probs=72.7

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCC---hhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWC---GPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC---~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .....++.++++..+.. +...+ .|++..+   +.+....-++-++.+.+++.+..+.++.+....+..+||+..+|++
T Consensus         9 ~g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen    9 HGWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             -TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             cCCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence            35677889999985544 44444 4555444   4455555588999999999999999998888999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHH
Q 030165          153 LFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~  172 (182)
                      ++|++|+.+..+.|..+-++
T Consensus        87 vf~R~g~~lG~i~gi~dW~d  106 (107)
T PF07449_consen   87 VFFRDGRYLGAIEGIRDWAD  106 (107)
T ss_dssp             EEEETTEEEEEEESSSTHHH
T ss_pred             EEEECCEEEEEecCeecccc
Confidence            99999999999999877554

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=6.6e-07  Score=63.89  Aligned_cols=74  Identities=24%  Similarity=0.480  Sum_probs=59.3

Q ss_pred             hhHHHHHH--cCCCcEEEEEEc--------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcCC
Q 030165           84 SSWENLVI--SSENPVLVEFWA--------PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------SPNIATKYGI  146 (182)
Q Consensus        84 ~~~~~~~~--~~~~~vlV~F~a--------~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------~~~l~~~~~I  146 (182)
                      ++|++.+.  .+++.++|+|++        +||+.|.+..|++.+.-+..+.++.|+.+++.+       +..+-...++
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~   92 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI   92 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence            45665443  255669999996        699999999999999999888899999999854       3345666777


Q ss_pred             -CcccEEEEEEC
Q 030165          147 -RSIPTVLFFKN  157 (182)
Q Consensus       147 -~~iPTl~~f~~  157 (182)
                       .++||++=+++
T Consensus        93 lt~vPTLlrw~~  104 (128)
T KOG3425|consen   93 LTAVPTLLRWKR  104 (128)
T ss_pred             eeecceeeEEcC
Confidence             99999999975

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.42  E-value=3e-06  Score=66.56  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             Cc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHcC
Q 030165           95 NP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATKYG  145 (182)
Q Consensus        95 ~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~~  145 (182)
                      +. +|+.||++||+.|....+.|.++++++.+ ++.++.|++|.                           ...+++.||
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg  105 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG  105 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence            44 56689999999999999999999999864 47888887664                           224677888


Q ss_pred             CC----cc----cEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          146 IR----SI----PTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       146 I~----~i----PTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      +.    +.    |+.+++ ++|++.....+.    .+.+++.+.|+.+
T Consensus       106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            76    33    445666 689888777663    3567788877664

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.41  E-value=4.2e-06  Score=66.44  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             CCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHc
Q 030165           94 ENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATKY  144 (182)
Q Consensus        94 ~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~  144 (182)
                      ++. ||+.||+.||+.|....+.|.++++++.. ++.++.+++|.                           +..+++.|
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y  107 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL  107 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence            555 57899999999999999999999999863 47777777654                           22467788


Q ss_pred             CCC-------cccEEEEEE-CCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          145 GIR-------SIPTVLFFK-NGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       145 ~I~-------~iPTl~~f~-~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      |+.       .+|+++++. +|++.......    .+.+++.+.|+.+
T Consensus       108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            873       689888884 88887765432    3577777777654

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.40  E-value=3.3e-06  Score=62.99  Aligned_cols=82  Identities=27%  Similarity=0.456  Sum_probs=65.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCCh--------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDSP--------------------------------  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~~--------------------------------  138 (182)
                      ..+++|+.|+..-|++|+.+.+.+.++.+++  ++++.++..+.-...                                
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4567899999999999999999999999999  788888888651000                                


Q ss_pred             ------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          139 ------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       139 ------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                                          ..+.++||.++||+++  ||+.   +.|..+.+++.++|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence                                                1446689999999998  9987   4788999999999985

...

>PRK13189 peroxiredoxin; Provisional

Probab=98.38  E-value=5.2e-06  Score=66.19  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030165           93 SENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATK  143 (182)
Q Consensus        93 ~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~  143 (182)
                      .++. +|+.||++||+.|....+.|.++++++.+ ++.++.+.+|.                           ...+++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            3564 45678899999999999999999998863 46777776653                           2346778


Q ss_pred             cCCC-------cccEEEEEE-CCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          144 YGIR-------SIPTVLFFK-NGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       144 ~~I~-------~iPTl~~f~-~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      ||+.       .+|+++++. +|++.....+.    .+.+++.+.|+.+
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8875       468778884 88887766533    3567787777654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.35  E-value=5e-06  Score=73.91  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=80.1

Q ss_pred             cCccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.-..++++..+. +.+-++++ +-.|..++|++|......+++++...+ ++.+-.+|..+.++++++|+|.++|+++
T Consensus        97 ~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~  174 (517)
T PRK15317         97 GGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVF  174 (517)
T ss_pred             cCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEE
Confidence            34455666666655 54545554 888999999999999999999998766 6999999999999999999999999996


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +  ||+.  .+.|..+.++|.+.+.+
T Consensus       175 i--~~~~--~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        175 L--NGEE--FGQGRMTLEEILAKLDT  196 (517)
T ss_pred             E--CCcE--EEecCCCHHHHHHHHhc
Confidence            6  7764  46688898888888764

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.34  E-value=2.9e-06  Score=64.36  Aligned_cols=40  Identities=28%  Similarity=0.487  Sum_probs=34.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL  132 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v  132 (182)
                      ..++.|+.|+...|++|+.+.+.+.++.+++++++.+..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~   53 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV   53 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence            4678999999999999999999999999988777665543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.33  E-value=1.5e-05  Score=58.38  Aligned_cols=105  Identities=12%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCC---Chh-h-hhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCC--c
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPW---CGP-C-RMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIR--S  148 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w---C~~-C-~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~--~  148 (182)
                      ++.++++++..+..=.++..-+|-| -|.   |.. + ..+...|.+++++|.++ +.|+.+|.++...+.+.|||.  .
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence            4677776666442222233334444 432   322 2 35677899999999999 999999999999999999995  4


Q ss_pred             ccEEEEEECCeEEEE-EEcCCCHHHHHHHHHHHhC
Q 030165          149 IPTVLFFKNGEKKES-IIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       149 iPTl~~f~~G~~v~~-~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+++++...+.... ..|..+.+.+.+|++++++
T Consensus        82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             CCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence            999999964332222 6688999999999999874

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.33  E-value=8.7e-06  Score=64.62  Aligned_cols=88  Identities=10%  Similarity=0.156  Sum_probs=64.2

Q ss_pred             CCCcEE-EEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC---------------------------hHHHHH
Q 030165           93 SENPVL-VEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS---------------------------PNIATK  143 (182)
Q Consensus        93 ~~~~vl-V~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~---------------------------~~l~~~  143 (182)
                      .++.++ +.||++||+.|....+.|.++++++.. ++.++.+++|..                           .++++.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            356655 488999999999999999999999853 477777776532                           246677


Q ss_pred             cCCC-------cccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          144 YGIR-------SIPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       144 ~~I~-------~iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      ||+.       .+|+.+++ ++|++.....+.    .+.+++.+.|+.+
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8863       46877777 488887766543    3567777777654

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.32  E-value=5.3e-06  Score=56.33  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCC--CcccEEEEEECCeEEEEEEcCCCHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYGI--RSIPTVLFFKNGEKKESIIGAVPKS  171 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I--~~iPTl~~f~~G~~v~~~~G~~~~~  171 (182)
                      ++.|..+||++|++....|+++..++.+ +.+..+|++...    ++.+.+|-  .++|++++  ||+.+    |  ..+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G~~   72 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--GCT   72 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--CHH
Confidence            6789999999999999999998766543 677788887533    56667774  89999954  77542    2  346


Q ss_pred             HHHHHHHHH
Q 030165          172 TLSSTLDKY  180 (182)
Q Consensus       172 ~l~~~l~~~  180 (182)
                      +|.+++++.
T Consensus        73 dl~~~~~~~   81 (86)
T TIGR02183        73 DFEQLVKEN   81 (86)
T ss_pred             HHHHHHHhc
Confidence            677776653

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.31  E-value=1e-05  Score=66.03  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++|++|| +.||+.|....+.|.+..+++.+ .+.++.|.+|.                            +.++++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            4567777777 89999999999999999998863 36677776654                            234778


Q ss_pred             HcCCC-----cccEEEEEE-CCeEEEEEEc----CCCHHHHHHHHHHH
Q 030165          143 KYGIR-----SIPTVLFFK-NGEKKESIIG----AVPKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~-----~iPTl~~f~-~G~~v~~~~G----~~~~~~l~~~l~~~  180 (182)
                      .||+.     ..|+.++++ +|++......    ..+.+++.+.|+.+
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            89985     589888885 8988876642    23567777766543

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.25  E-value=6.8e-06  Score=51.70  Aligned_cols=55  Identities=20%  Similarity=0.486  Sum_probs=43.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ++.|+.+||++|++....|++.      ++.+-.+|+++.++    +.+..|..++|++++  ||+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~   59 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF   59 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence            5789999999999999888543      37788888887754    344459999999987  7764

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=98.23  E-value=9e-06  Score=53.15  Aligned_cols=68  Identities=22%  Similarity=0.428  Sum_probs=50.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY---GIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~---~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      +..|+.++|++|++....|++.      ++.+-.+|++++++..+.+   |..++|++++  +|+.   ..|..+++.|.
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G~~~~~~~   69 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSGFRPDKLK   69 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEeccCHHHHH
Confidence            3568899999999999998753      4788888998887766555   8889999755  5642   34446777776


Q ss_pred             HH
Q 030165          175 ST  176 (182)
Q Consensus       175 ~~  176 (182)
                      ++
T Consensus        70 ~~   71 (72)
T TIGR02194        70 AL   71 (72)
T ss_pred             hc
Confidence            53

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.22  E-value=7.7e-06  Score=54.54  Aligned_cols=60  Identities=17%  Similarity=0.314  Sum_probs=45.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC---hHHHHHcCCCcccEEEEEECCeE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---PNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~---~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +++.-|+.|+.+||++|++....|++.      ++.+..+|+++.   ..+....|..++|.+++  ||+.
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~   67 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL   67 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence            345557889999999999999999753      366667777765   34555679999999954  7864

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.22  E-value=9.6e-06  Score=57.86  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             EcChhhHHHHHHcCCCcEEEEEE----cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCChHHHHHcCCCc----cc
Q 030165           80 VVTDSSWENLVISSENPVLVEFW----APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDSPNIATKYGIRS----IP  150 (182)
Q Consensus        80 ~l~~~~~~~~~~~~~~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~~~l~~~~~I~~----iP  150 (182)
                      +++.++.....   .++.++.|+    ...=..=..+...+.++|+++. +++.|+.+|.++.....+.||+..    .|
T Consensus         3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P   79 (111)
T cd03073           3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP   79 (111)
T ss_pred             eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence            45666666632   344444443    2233444668889999999999 799999999999888999999985    99


Q ss_pred             EEEEEECCeEEEEEEcCC-CHHHHHHHHHHHh
Q 030165          151 TVLFFKNGEKKESIIGAV-PKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~-~~~~l~~~l~~~l  181 (182)
                      ++.++..........+.. +.+.|.+|+++++
T Consensus        80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             EEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence            999986322223345667 8999999998764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.3e-05  Score=66.13  Aligned_cols=107  Identities=18%  Similarity=0.343  Sum_probs=83.8

Q ss_pred             hccCccEEcChhhHHHHHHcCCC--cEEEEEEcC----CChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCCCCh
Q 030165           73 EAVNEVQVVTDSSWENLVISSEN--PVLVEFWAP----WCGPCRMIAPAIEELAKEYAG--------KVACFKLNTDDSP  138 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~~~~--~vlV~F~a~----wC~~C~~~~p~l~~~a~~~~~--------~v~~~~vd~d~~~  138 (182)
                      .....+..+++++|...+....+  .++|.|.|.    .|.-|+....+|.-++..+..        ++-|..||.|+.+
T Consensus        37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p  116 (331)
T KOG2603|consen   37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP  116 (331)
T ss_pred             cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence            34577999999999997765444  478889874    599999999999999877631        5889999999999


Q ss_pred             HHHHHcCCCcccEEEEEE--CCeEEE------EEEcCCCHHHHHHHHHHH
Q 030165          139 NIATKYGIRSIPTVLFFK--NGEKKE------SIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~--~G~~v~------~~~G~~~~~~l~~~l~~~  180 (182)
                      ++.++++++++|++++|.  .|+...      ...|.. +|++.+|+++.
T Consensus       117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-Ae~iaqfv~~~  165 (331)
T KOG2603|consen  117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-AEQIAQFVADR  165 (331)
T ss_pred             HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh-HHHHHHHHHHh
Confidence            999999999999999993  333221      112333 88888888864

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.20  E-value=6.4e-06  Score=54.69  Aligned_cols=57  Identities=26%  Similarity=0.495  Sum_probs=44.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----NIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ++.|+++||++|+.+...|+++..    ...++.++.+++.     .+.+.+|+.++|++  |.+|+.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~   63 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF   63 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence            578999999999999999998765    3567778777652     35566799999997  447754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.20  E-value=7.2e-06  Score=64.52  Aligned_cols=41  Identities=17%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNT  134 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~  134 (182)
                      +++.||+|+.-.|++|..+.+.+   +++.+.+++++.++.+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            57889999999999999999976   888888887777665543

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.18  E-value=1.9e-05  Score=61.73  Aligned_cols=86  Identities=13%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC----------------------------hHHHH
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS----------------------------PNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~----------------------------~~l~~  142 (182)
                      .++.++|+||+ .||+.|....+.|.++++++.. ++.++.|+.|..                            .++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            46789999994 8899999999999999999874 477777776522                            24678


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLD  178 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~  178 (182)
                      .||+.      .+|+.+++ ++|+......+..    +.+++.+.|+
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~  161 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE  161 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            88885      36887777 4888887776643    3344444443

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.17  E-value=1.5e-05  Score=53.43  Aligned_cols=76  Identities=25%  Similarity=0.484  Sum_probs=61.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC----eEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG----EKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G----~~v~~~~G~~~~~~l  173 (182)
                      |+.|..+.|+-|......++++....+  +.+-.+|+++++++.++|+. .+|.+.+  +|    +......+..+.++|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHH
Confidence            688999999999999999998776654  88999999999999999996 7999766  44    113456678999999


Q ss_pred             HHHHH
Q 030165          174 SSTLD  178 (182)
Q Consensus       174 ~~~l~  178 (182)
                      .+||+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.15  E-value=4.1e-05  Score=53.96  Aligned_cols=92  Identities=22%  Similarity=0.353  Sum_probs=65.5

Q ss_pred             ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCc-ccEEEEE
Q 030165           82 TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRS-IPTVLFF  155 (182)
Q Consensus        82 ~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~-iPTl~~f  155 (182)
                      +.++|++++.. .+++++|+=.+..|+-..+....|++.....++.+.++.+|+-+.++    ++++|||+. -|-++++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili   85 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI   85 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence            66788886554 36788888889999999999999999999998779999999987764    789999985 6999999


Q ss_pred             ECCeEEEEEE-cCCCHHHH
Q 030165          156 KNGEKKESII-GAVPKSTL  173 (182)
Q Consensus       156 ~~G~~v~~~~-G~~~~~~l  173 (182)
                      +||+.+-.-. +..+.+.|
T Consensus        86 ~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   86 KNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             ETTEEEEEEEGGG-SHHHH
T ss_pred             ECCEEEEECccccCCHHhc
Confidence            9999886544 33455544

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.13  E-value=2.8e-05  Score=69.09  Aligned_cols=99  Identities=15%  Similarity=0.262  Sum_probs=79.7

Q ss_pred             cCccEEcChhhHHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+....++++..+. +.+-+++ -+-.|..+.|++|......+++++...+ ++..-.+|..+.++++++|+|.++|+++
T Consensus        98 ~~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~  175 (515)
T TIGR03140        98 GGHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVF  175 (515)
T ss_pred             cCCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEE
Confidence            34456677776665 4444455 4888999999999999999999998877 5888899999999999999999999997


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +  ||+.  .+.|..+.+++.+.+.+
T Consensus       176 i--~~~~--~~~g~~~~~~~~~~l~~  197 (515)
T TIGR03140       176 L--NGEE--FHNGRMDLAELLEKLEE  197 (515)
T ss_pred             E--CCcE--EEecCCCHHHHHHHHhh
Confidence            6  7764  46688888888777654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.09  E-value=4.9e-05  Score=52.05  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             EcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC
Q 030165           80 VVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG  158 (182)
Q Consensus        80 ~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G  158 (182)
                      +++. ++++. .+..+.+++|-|+.++++   .....|.++|+.+.+.+.|+.++   +.+++.++++.. |++++|+..
T Consensus         3 ~i~s~~~l~~-~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~   74 (97)
T cd02981           3 ELTSKEELEK-FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF   74 (97)
T ss_pred             ecCCHHHHHH-HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence            3444 34444 567788999999999988   46778899999997778887665   467888888754 899999653


Q ss_pred             -eEEEEEEcCCCHHHHHHHHHH
Q 030165          159 -EKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       159 -~~v~~~~G~~~~~~l~~~l~~  179 (182)
                       .....+.|..+.+.|.+||..
T Consensus        75 ~~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          75 EEEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             ccCCccCCCCCCHHHHHHHHHh
Confidence             444557788888999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.09  E-value=2.1e-05  Score=50.08  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      ++.|+++||++|+.....|++..      +.+..+|++.+.+.    .+..+..++|+++  .+|+.+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig   62 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG   62 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            56799999999999999998774      67778888876643    4445778899874  4775443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK10329 glutaredoxin-like protein; Provisional

Probab=98.02  E-value=9.4e-05  Score=49.70  Aligned_cols=70  Identities=20%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH---HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA---TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~---~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      +..|..+||++|++.+..|++.      ++.|-.+|++++++.+   ...|...+|++++  ++.   .+.| .+++.|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~G-f~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSG-FRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEec-CCHHHHH
Confidence            6678999999999999888652      4888899999877643   3457789999965  442   3444 6788888


Q ss_pred             HHHHH
Q 030165          175 STLDK  179 (182)
Q Consensus       175 ~~l~~  179 (182)
                      +++..
T Consensus        71 ~~~~~   75 (81)
T PRK10329         71 RLHPA   75 (81)
T ss_pred             HHHHh
Confidence            77654

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.98  E-value=8.6e-05  Score=48.31  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=47.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH---HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~---l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ++.|..+||++|.+.+..|++.      ++.+..+|++++..   +....|..++|.++  .||+.+    |  ..+++.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~l~   68 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDDLE   68 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHHHH
Confidence            6779999999999998888753      36677777776543   33446899999984  478643    2  356666


Q ss_pred             HHH
Q 030165          175 STL  177 (182)
Q Consensus       175 ~~l  177 (182)
                      ++|
T Consensus        69 ~~l   71 (72)
T cd03029          69 KYF   71 (72)
T ss_pred             HHh
Confidence            665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.96  E-value=7e-05  Score=48.84  Aligned_cols=55  Identities=16%  Similarity=0.387  Sum_probs=41.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCC-cccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA----TKYGIR-SIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~----~~~~I~-~iPTl~~f~~G~~  160 (182)
                      ++.|+.+||++|+.....|++.      ++.+..+|++++++..    +.+|.. ++|++++  +|+.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~   61 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVH   61 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEE
Confidence            5679999999999999888763      3677788888765543    446777 9998754  7754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.94  E-value=0.00011  Score=65.91  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             HHHHHHcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE-CCeEE-E
Q 030165           86 WENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK-NGEKK-E  162 (182)
Q Consensus        86 ~~~~~~~~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~-~G~~v-~  162 (182)
                      +...+..-.++ .++.|+.+.|..|..+...++++++ +.+++.+...|.+.+.+++++|+|+.+|++.+++ +|+.. .
T Consensus       357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i  435 (555)
T TIGR03143       357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL  435 (555)
T ss_pred             HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence            55545455566 5778889899999999999999994 4567999889999999999999999999999995 66433 6


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|+.++
T Consensus       436 ~f~g~P~G~Ef~s~i~~i~  454 (555)
T TIGR03143       436 KFHGVPSGHELNSFILALY  454 (555)
T ss_pred             EEEecCccHhHHHHHHHHH
Confidence            8889888888988888765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PHA03050 glutaredoxin; Provisional

Probab=97.91  E-value=9e-05  Score=52.58  Aligned_cols=65  Identities=14%  Similarity=0.244  Sum_probs=44.1

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC---C----hHHHHHcCCCcccEEEEEECCeEE
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD---S----PNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~---~----~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      .+.+++  |+.|..+|||+|++....|++..-.++   .+-.+|+++   .    ..+.+..|.+++|++++  +|+.+
T Consensus         9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i   80 (108)
T PHA03050          9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI   80 (108)
T ss_pred             HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence            444444  667999999999999998887743221   344455554   2    23566678899999954  78654

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.88  E-value=6.1e-05  Score=49.82  Aligned_cols=55  Identities=16%  Similarity=0.446  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ++.|+.+||++|+.....|++.      ++.+-.+|++.+++.    .+..|..++|++++  +|+.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~   59 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVH   59 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            4678999999999999999864      366667777776554    34458889999844  7754

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.85  E-value=6.7e-05  Score=50.36  Aligned_cols=58  Identities=26%  Similarity=0.481  Sum_probs=46.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CC------------------------------hHHHHHcC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DS------------------------------PNIATKYG  145 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~------------------------------~~l~~~~~  145 (182)
                      +++|+.+.|++|..+.+.++++.+...+++.+......  ..                              ..++.++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998777777777766542  11                              23567899


Q ss_pred             CCcccEEEEE
Q 030165          146 IRSIPTVLFF  155 (182)
Q Consensus       146 I~~iPTl~~f  155 (182)
                      +.++||+++.
T Consensus        81 ~~g~Pt~v~~   90 (98)
T cd02972          81 VTGTPTFVVN   90 (98)
T ss_pred             CCCCCEEEEC
Confidence            9999999885

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.80  E-value=9e-05  Score=51.70  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=39.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-------HHHHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-------IATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-------l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      ++.|..+||++|+.....|++..      +.+..+|+|+.++       +.+..|.+++|.++  -+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence            66799999999999998887652      4555666665432       33345788999984  478543

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.78  E-value=0.0002  Score=46.71  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      ++.|..+||++|++....|++.      ++.+..+|++++++    +.+..+-..+|++++  ||+.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i   62 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV   62 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            5679999999999999988863      37777888887665    555568889999854  77543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.77  E-value=0.00073  Score=48.75  Aligned_cols=101  Identities=19%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHH-HHh--cCceEEEEEeCC-----CChHHHHHcCC--
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA-KEY--AGKVACFKLNTD-----DSPNIATKYGI--  146 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a-~~~--~~~v~~~~vd~d-----~~~~l~~~~~I--  146 (182)
                      ....++.-+|++ +...-+.+||.|=..  .|=-.-+..|.+++ +..  .+.+.++.|-+.     +|.+|+++|+|  
T Consensus         5 G~v~LD~~tFdK-vi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDK-VIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHH-HGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhh-eeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            357889999999 556668999999643  23334566788888 443  245888888773     57899999999  


Q ss_pred             CcccEEEEEE-CCeEEEEE--EcCCCHHHHHHHHHHH
Q 030165          147 RSIPTVLFFK-NGEKKESI--IGAVPKSTLSSTLDKY  180 (182)
Q Consensus       147 ~~iPTl~~f~-~G~~v~~~--~G~~~~~~l~~~l~~~  180 (182)
                      +.+|.+.+|. +.+...++  .|..+.+.|..|+.+-
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence            5789999997 55666677  7888999999999763

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00047  Score=46.18  Aligned_cols=66  Identities=18%  Similarity=0.406  Sum_probs=45.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHc-CCCcccEEEEEECCeEEEEEEcCCCHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-----NIATKY-GIRSIPTVLFFKNGEKKESIIGAVPKS  171 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-----~l~~~~-~I~~iPTl~~f~~G~~v~~~~G~~~~~  171 (182)
                      ++.|..+||++|++....|++.      .+.+..+++++..     +...+. |.+++|.+++  ||+   .+.|..+.+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~---~igg~~d~~   71 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK---HVGGCDDLD   71 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE---EEeCcccHH
Confidence            5678999999999999888832      3666676766555     344555 7899999877  775   333444555


Q ss_pred             HHH
Q 030165          172 TLS  174 (182)
Q Consensus       172 ~l~  174 (182)
                      .+.
T Consensus        72 ~~~   74 (80)
T COG0695          72 ALE   74 (80)
T ss_pred             HHH
Confidence            544

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.54  E-value=0.00058  Score=53.27  Aligned_cols=101  Identities=18%  Similarity=0.340  Sum_probs=81.6

Q ss_pred             cCccEEcChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .+.|..+++.+|-+.+..  .+..|+|..|...=+-|.-+...|+.++..|+. ++|+++-....   ...|.=...||+
T Consensus        90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl  165 (240)
T KOG3170|consen   90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTL  165 (240)
T ss_pred             ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeE
Confidence            578899999998877654  456689999999999999999999999999996 99999865542   335777889999


Q ss_pred             EEEECCeEEEEEEcCC-------CHHHHHHHHHH
Q 030165          153 LFFKNGEKKESIIGAV-------PKSTLSSTLDK  179 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~-------~~~~l~~~l~~  179 (182)
                      ++|..|.....++|..       +.+++..++-+
T Consensus       166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             EEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            9999999888887643       45666666543

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.48  E-value=0.0011  Score=45.91  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=40.9

Q ss_pred             CcEEEEEE----cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165           95 NPVLVEFW----APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        95 ~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~  160 (182)
                      .+|+|+-.    ++||++|+.....|++.      ++.+..+|+++++++    .+..|-..+|.+++  ||+.
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~   77 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEF   77 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEE
Confidence            44554433    39999999999888775      266778888776653    34567789999854  7754

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.44  E-value=0.0014  Score=52.61  Aligned_cols=108  Identities=14%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             hccCccEEcChhhHHHH--HHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh------------
Q 030165           73 EAVNEVQVVTDSSWENL--VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP------------  138 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~--~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~------------  138 (182)
                      .++.++..+++.+...+  ..+.++|.||.|.+-.||+=+.-...|++++++|.+...|+.|.++|..            
T Consensus        79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~  158 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY  158 (237)
T ss_pred             CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence            34567888888773332  3467999999999999999999999999999999987788877664322            


Q ss_pred             ------H------HHHH----c-CC---------------Cccc-EEEEEECCeEEEEEE-cC--CCHHHHHHHHHHH
Q 030165          139 ------N------IATK----Y-GI---------------RSIP-TVLFFKNGEKKESII-GA--VPKSTLSSTLDKY  180 (182)
Q Consensus       139 ------~------l~~~----~-~I---------------~~iP-Tl~~f~~G~~v~~~~-G~--~~~~~l~~~l~~~  180 (182)
                            .      .|+.    + +.               .++| .+.+++||+.+..-. |.  ...+++++||+++
T Consensus       159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence                  1      1111    1 00               1477 466778998643221 22  3589999999985

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK10638 glutaredoxin 3; Provisional

Probab=97.34  E-value=0.0013  Score=44.02  Aligned_cols=56  Identities=11%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      ++.|..+||++|+.....|++.      .+.+..+|++++++    +.+..|...+|++++  +|+.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i   63 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI   63 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            5678899999999999888864      36666778876654    345568889998844  77543

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.33  E-value=0.0013  Score=44.82  Aligned_cols=58  Identities=22%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             CcEEEEEE----cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165           95 NPVLVEFW----APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        95 ~~vlV~F~----a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~  160 (182)
                      .+|+|+-.    .+||++|+.....|++..      +.+..+|++++.++    .+..|-+++|.+  |.+|+.
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~   73 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL   73 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence            45555433    279999999998887763      66677777766553    455688899997  447864

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.30  E-value=0.00079  Score=53.07  Aligned_cols=87  Identities=18%  Similarity=0.367  Sum_probs=70.4

Q ss_pred             CccEEc-ChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           76 NEVQVV-TDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      +.|.++ ++++|.+.+..+  .-.++|+.|-+.-.-|..+...+.=+|.+|+. ++|+++.... -....+|..+++||+
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~L  215 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTL  215 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceE
Confidence            355565 567888866554  23578999999999999999999999999985 9999996543 445788999999999


Q ss_pred             EEEECCeEEEEE
Q 030165          153 LFFKNGEKKESI  164 (182)
Q Consensus       153 ~~f~~G~~v~~~  164 (182)
                      +||++|+.+.-+
T Consensus       216 liYkgGeLIgNF  227 (273)
T KOG3171|consen  216 LIYKGGELIGNF  227 (273)
T ss_pred             EEeeCCchhHHH
Confidence            999999887644

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.27  E-value=0.0023  Score=48.44  Aligned_cols=65  Identities=26%  Similarity=0.341  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC-eEEEEEEcC-CCHHHHHHHHHHH
Q 030165          112 IAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG-EKKESIIGA-VPKSTLSSTLDKY  180 (182)
Q Consensus       112 ~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G-~~v~~~~G~-~~~~~l~~~l~~~  180 (182)
                      ....|.++++.+.+.+.|+.++   +.++++++++.. |++++|+++ +....+.|. .+.++|.+||.+.
T Consensus         8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~   74 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN   74 (184)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence            4567899999999889999887   677999999999 999999874 445677786 7999999999864

...

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0067  Score=45.81  Aligned_cols=91  Identities=15%  Similarity=0.275  Sum_probs=65.5

Q ss_pred             HcCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC---------------------CCChHHHHHcCCC
Q 030165           91 ISSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNT---------------------DDSPNIATKYGIR  147 (182)
Q Consensus        91 ~~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~---------------------d~~~~l~~~~~I~  147 (182)
                      .-.+++||++|| ..|.+.|-..+-.|.+...++.. ...++.|..                     |.+.++++.||+.
T Consensus        27 d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~  106 (157)
T COG1225          27 DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW  106 (157)
T ss_pred             HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence            345779999999 78999999999999998888865 467777766                     4455688889984


Q ss_pred             c------------ccE-EEEEECCeEEEEEEcCC---CHHHHHHHHHHHh
Q 030165          148 S------------IPT-VLFFKNGEKKESIIGAV---PKSTLSSTLDKYV  181 (182)
Q Consensus       148 ~------------iPT-l~~f~~G~~v~~~~G~~---~~~~l~~~l~~~l  181 (182)
                      .            .++ ++|-++|++...+....   ..+++.++|+++.
T Consensus       107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~  156 (157)
T COG1225         107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA  156 (157)
T ss_pred             cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence            3            344 44446898888774433   3566777776653

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.15  E-value=0.001  Score=51.07  Aligned_cols=33  Identities=27%  Similarity=0.540  Sum_probs=26.0

Q ss_pred             EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q 030165          100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL  132 (182)
Q Consensus       100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v  132 (182)
                      +|..|.|+.|-.+.|.+.++..+|+.++.+-.+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i   34 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI   34 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence            699999999999999999999999987655544

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.99  E-value=0.0083  Score=41.89  Aligned_cols=95  Identities=14%  Similarity=0.235  Sum_probs=73.1

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCC----ccc-EEEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIR----SIP-TVLF  154 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~----~iP-Tl~~  154 (182)
                      +-.+|.. ++.....|+|.|..+-=..- .....|.++++...|.-.++.||+.+  ...||.++.|.    --| ++..
T Consensus         8 d~KdfKK-LLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH   85 (112)
T cd03067           8 DHKDFKK-LLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH   85 (112)
T ss_pred             chHHHHH-HHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence            4467877 55667788888887643332 33447889999999999999999987  66799999998    444 5778


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      |+||.--..+...++...+..|+.
T Consensus        86 YKdG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          86 YKDGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             ccCCCccccccchhhHHHHHHHhh
Confidence            899988777777788888888775

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0045  Score=43.59  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=41.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-HH----HHHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-NI----ATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~l----~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      +|.|..+||++|+.+...|.+    +.....++.+|.+++. ++    .+--|-+.+|.+++  +|+-+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i   78 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI   78 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence            455999999999998877777    5555677777776544 32    22235678998866  88665

>PRK10824 glutaredoxin-4; Provisional

Probab=96.96  E-value=0.0035  Score=44.95  Aligned_cols=51  Identities=18%  Similarity=0.268  Sum_probs=35.9

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEEE
Q 030165          104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus       104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      |||++|+.....|+++.      +.+..+|++++.++    .+.-|-+.+|.+++  ||+-++
T Consensus        28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG   82 (115)
T PRK10824         28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG   82 (115)
T ss_pred             CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence            69999999999888763      44555677666553    33346778888766  886553

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0045  Score=56.22  Aligned_cols=83  Identities=16%  Similarity=0.323  Sum_probs=67.5

Q ss_pred             EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHHcC--------CC
Q 030165           79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATKYG--------IR  147 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~~~--------I~  147 (182)
                      ..-..+.|.+ +...++|++|-...+||.-|+.|+.. |  +++++-++..+.-+|||-++-+++-+.|.        --
T Consensus        29 ~pW~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G  107 (667)
T COG1331          29 YPWGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQG  107 (667)
T ss_pred             cccCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence            4457788887 77899999999999999999999875 4  67888888889999999999998877764        55


Q ss_pred             cccEEEEE-ECCeEEE
Q 030165          148 SIPTVLFF-KNGEKKE  162 (182)
Q Consensus       148 ~iPTl~~f-~~G~~v~  162 (182)
                      ++|-.+|. .||+...
T Consensus       108 GWPLtVfLTPd~kPFf  123 (667)
T COG1331         108 GWPLTVFLTPDGKPFF  123 (667)
T ss_pred             CCceeEEECCCCceee
Confidence            89954444 7887653

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=96.86  E-value=0.018  Score=43.88  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      .+.++||.++||+++  ||+  ..+.|..+.+.|.+.|+
T Consensus       159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~  193 (193)
T PF01323_consen  159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ  193 (193)
T ss_dssp             HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred             HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence            456689999999999  887  67889999999988773

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=96.63  E-value=0.022  Score=42.69  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CCcEEEEEE-cCCChhhhhh-hHHHHHHHHHhcC-ce-EEEEEeCC-----------------------CChHHHHHcCC
Q 030165           94 ENPVLVEFW-APWCGPCRMI-APAIEELAKEYAG-KV-ACFKLNTD-----------------------DSPNIATKYGI  146 (182)
Q Consensus        94 ~~~vlV~F~-a~wC~~C~~~-~p~l~~~a~~~~~-~v-~~~~vd~d-----------------------~~~~l~~~~~I  146 (182)
                      ++++|+.|| +.||+.|... .+.|.+..+++.. .+ .++.+..|                       ...++++.||+
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv  108 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL  108 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence            445555554 8999999998 9999988888753 23 36655543                       33457777887


Q ss_pred             C------c-----ccEEEEEECCeEEEEEEcCC
Q 030165          147 R------S-----IPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       147 ~------~-----iPTl~~f~~G~~v~~~~G~~  168 (182)
                      .      +     ....+++++|++...+....
T Consensus       109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~  141 (155)
T cd03013         109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED  141 (155)
T ss_pred             CccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence            3      1     24456666787776555433

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.02  Score=45.71  Aligned_cols=38  Identities=24%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .++.++||.++||+++  +|+   .+.|..+.+++.+.|+..+
T Consensus       206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~  243 (244)
T COG1651         206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL  243 (244)
T ss_pred             HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence            3667799999999987  555   7788889999999998764

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.45  E-value=0.012  Score=51.24  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=41.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH---HH---------cCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA---TK---------YGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~---~~---------~~I~~iPTl~~f~~G~~  160 (182)
                      |+.|..+||++|++....|++.      ++.+-.+|+++.+...   ++         .|.+++|++++  +|+.
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~   70 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH   70 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence            6789999999999998888774      3788888888766422   23         37789999966  6753

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.44  E-value=0.075  Score=36.83  Aligned_cols=94  Identities=16%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             EEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           79 QVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        79 ~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      ..+ +.++++..+...+..++|-|+..-=.   .....|.+++..+.....|+...   +.+++..+++. .|+++++++
T Consensus         3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~   75 (102)
T cd03066           3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP   75 (102)
T ss_pred             eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence            445 44557774431566666666655333   35667889999986667875433   44677788775 688999965


Q ss_pred             -CeEEEEE-EcCCCHHHHHHHHHH
Q 030165          158 -GEKKESI-IGAVPKSTLSSTLDK  179 (182)
Q Consensus       158 -G~~v~~~-~G~~~~~~l~~~l~~  179 (182)
                       ......+ .|..+.+.|.+||..
T Consensus        76 ~~e~~~~y~~g~~~~~~l~~fi~~   99 (102)
T cd03066          76 FMEEPVTIPDKPYSEEELVDFVEE   99 (102)
T ss_pred             CCCCCcccCCCCCCHHHHHHHHHH
Confidence             3333445 677899999999975

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PTZ00062 glutaredoxin; Provisional

Probab=96.43  E-value=0.021  Score=45.06  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=36.4

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEE
Q 030165          104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus       104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      |||++|++....|++.      ++.+..+|+++++++    .+..|-..+|.+.+  ||+.+
T Consensus       126 p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I  179 (204)
T PTZ00062        126 PFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI  179 (204)
T ss_pred             CCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            7999999998888864      367777888776654    33346778888765  78654

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.00  E-value=0.13  Score=35.80  Aligned_cols=90  Identities=14%  Similarity=0.242  Sum_probs=60.4

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE-----
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK-----  156 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~-----  156 (182)
                      +.++++. .+..++.++|-|+..-=.   .....|.+++..+.....|+...   ...++..+++  .|++++|+     
T Consensus         7 s~~~l~~-f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~   77 (104)
T cd03069           7 TEAEFEK-FLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLS   77 (104)
T ss_pred             CHHHHHH-HhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhh
Confidence            4455666 345566677767655333   36678889999987667876443   3567888998  68888882     


Q ss_pred             -CC-eEEEEEEcCCCHHHHHHHHHHH
Q 030165          157 -NG-EKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       157 -~G-~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                       +- .....+.|..+.+.|.+||...
T Consensus        78 ~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          78 NKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cccCcccccccCcCCHHHHHHHHHhh
Confidence             11 1123467888899999999753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=95.84  E-value=0.0036  Score=51.88  Aligned_cols=86  Identities=22%  Similarity=0.439  Sum_probs=66.8

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE-eCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL-NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v-d~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                      ..+|-+.||+.||+.-+.++|.++-....+.. +....+ +...-+++..+||+.+.|++++. +-.-..++-|..+...
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~s  153 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLAS  153 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHH
Confidence            56899999999999999999999888888773 332222 22334668899999999999887 4445567778888888


Q ss_pred             HHHHHHHHh
Q 030165          173 LSSTLDKYV  181 (182)
Q Consensus       173 l~~~l~~~l  181 (182)
                      +.+++.+++
T Consensus       154 Lv~fy~~i~  162 (319)
T KOG2640|consen  154 LVNFYTEIT  162 (319)
T ss_pred             HHHHHHhhc
Confidence            998887764

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=95.33  E-value=0.52  Score=32.44  Aligned_cols=84  Identities=20%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             hHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE-EE
Q 030165           85 SWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK-KE  162 (182)
Q Consensus        85 ~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~-v~  162 (182)
                      ++......-.++| ++.|..+. ..|..+...++++++..+ ++.+-..+.+.           ..|++.+..+|+. -.
T Consensus         9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gI   75 (94)
T cd02974           9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGI   75 (94)
T ss_pred             HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence            4444444455666 55555555 999999999999987754 57665444322           4799999977743 25


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|..++
T Consensus        76 rF~GiP~GhEf~Slilai~   94 (94)
T cd02974          76 RFAGIPMGHEFTSLVLALL   94 (94)
T ss_pred             EEEecCCchhHHHHHHHhC
Confidence            8889888888888887653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=95.32  E-value=0.063  Score=39.32  Aligned_cols=46  Identities=15%  Similarity=0.331  Sum_probs=36.0

Q ss_pred             eCCCChHHHHHcCCCcccEEEEEECCe-----------EEEEEEcCCCHHHHHHHHH
Q 030165          133 NTDDSPNIATKYGIRSIPTVLFFKNGE-----------KKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       133 d~d~~~~l~~~~~I~~iPTl~~f~~G~-----------~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++.-++.++++|+|+.+|++++.+++.           ..+...|..+.+.-.+.+.
T Consensus        56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia  112 (130)
T TIGR02742        56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA  112 (130)
T ss_pred             cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence            334468999999999999999998774           4678888888766665554

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.24  Score=37.29  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=66.6

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC--------ChHH---H-HHc
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD--------SPNI---A-TKY  144 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~--------~~~l---~-~~~  144 (182)
                      +..++++.+.- ..-.++.+||.=.|+-||.--+.. .|+.+.++|.++ +.++..-+++        +.++   | ..|
T Consensus        10 ~~~~~G~~~~l-~~~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y   87 (162)
T COG0386          10 VKDIDGEPVSL-SDYKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY   87 (162)
T ss_pred             eeccCCCCccH-HHhCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence            45555554443 334689999999999999765444 466777777653 4444443321        1111   1 223


Q ss_pred             CCC------------------------------------cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          145 GIR------------------------------------SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       145 ~I~------------------------------------~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ||+                                    .+=-+++-++|++++|+.-...++++...|+++|+
T Consensus        88 gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~  161 (162)
T COG0386          88 GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA  161 (162)
T ss_pred             CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence            332                                    12235566899999999999999999999999885

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=95.17  E-value=0.11  Score=37.01  Aligned_cols=61  Identities=16%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC------------CeEEEEEEcCCCHHHH
Q 030165          111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN------------GEKKESIIGAVPKSTL  173 (182)
Q Consensus       111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~------------G~~v~~~~G~~~~~~l  173 (182)
                      .+.+..+.+.+.....-..  .++.-++.++++|+|+.+||+++.++            .+..+...|..+.+.-
T Consensus        36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~a  108 (113)
T PF09673_consen   36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYA  108 (113)
T ss_pred             CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHH
Confidence            5666666666555432111  34445789999999999999999977            1344667777765443

The N-terminal portion of these proteins is heterogeneous.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.14  E-value=0.13  Score=38.40  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=39.7

Q ss_pred             EEEEEcC------CChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCC----CcccEEEEEECCeEE
Q 030165           98 LVEFWAP------WCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGI----RSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~------wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I----~~iPTl~~f~~G~~v  161 (182)
                      ||.|+++      +|++|+..+.+|+.+      .+.+..+|++.+.+    +.+.++-    ..+|.+++  +|+.+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I   71 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL   71 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence            3456666      999999999888865      37788888877654    4444554    67888765  77543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=95.03  E-value=0.11  Score=34.08  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=47.0

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .+..|-+..-+..+.....+.++.+++ ++...+-.+|+.+++++++.++|-++||++=.
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~   62 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV   62 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence            455666666677777777777777665 56688889999999999999999999997654

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=94.89  E-value=1.1  Score=33.07  Aligned_cols=91  Identities=9%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             HcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh------------------HHHHHcCCCcc
Q 030165           91 ISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP------------------NIATKYGIRSI  149 (182)
Q Consensus        91 ~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~------------------~l~~~~~I~~i  149 (182)
                      .++.|+.+|+-..+.-..+..+-..+   +++.+-+..++.++..|+....                  ..++.++...+
T Consensus        18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f   97 (136)
T cd02990          18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL   97 (136)
T ss_pred             hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence            45689999999998875554443332   4445555567888888876643                  24566889999


Q ss_pred             cEEEEEE-CC---eEEEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFK-NG---EKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~-~G---~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |.+.++- ..   .++.++.|..+++++...|...+
T Consensus        98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v  133 (136)
T cd02990          98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM  133 (136)
T ss_pred             CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence            9988883 22   67789999999999998887655

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.84  E-value=0.062  Score=42.90  Aligned_cols=39  Identities=33%  Similarity=0.649  Sum_probs=33.6

Q ss_pred             HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .++++||+++|||+|  +|+  ..+.|+.+.+.|.+.|+++++
T Consensus       176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence            678899999999999  554  467899999999999998863

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.79  E-value=0.33  Score=43.28  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=62.4

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE-E
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK-E  162 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v-~  162 (182)
                      +++..++..-.++|-+.++.+.|..|..+...++++++..+ ++.+-..+.+           ...|++.+..+|+.. .
T Consensus         8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i   75 (517)
T PRK15317          8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGV   75 (517)
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence            34555555567777666666689999999999999997764 5766443321           348999999877553 5


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|+.++
T Consensus        76 ~f~g~P~g~Ef~s~i~~i~   94 (517)
T PRK15317         76 RFAGIPMGHEFTSLVLALL   94 (517)
T ss_pred             EEEecCccHHHHHHHHHHH
Confidence            8889888888998888765

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=94.24  E-value=0.6  Score=34.57  Aligned_cols=73  Identities=26%  Similarity=0.417  Sum_probs=54.7

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC----cccEEEEEECCeEEEEEEcCCCHH
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR----SIPTVLFFKNGEKKESIIGAVPKS  171 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~----~iPTl~~f~~G~~v~~~~G~~~~~  171 (182)
                      .-++.|+.|.||=|......++.      ..+.+-.+..++-..+-++|||.    +=-|.++  ||+   .+.|..+.+
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~   94 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE   94 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence            44778999999999887766652      23666677778888888889986    4456655  785   456889999


Q ss_pred             HHHHHHHH
Q 030165          172 TLSSTLDK  179 (182)
Q Consensus       172 ~l~~~l~~  179 (182)
                      .+..+++.
T Consensus        95 aI~~ll~~  102 (149)
T COG3019          95 AIARLLAE  102 (149)
T ss_pred             HHHHHHhC
Confidence            99888764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.07  E-value=0.64  Score=41.44  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE-EE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK-KE  162 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~-v~  162 (182)
                      +++...+.+-.++|-+.++.+.|..|..+...++++++..+ ++.+...+.+.          ...|++.++++|+. -.
T Consensus         8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i   76 (515)
T TIGR03140         8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGI   76 (515)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence            34455455556777565555579999999999999987764 57765444332          35699999888763 35


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|+.++
T Consensus        77 ~f~g~P~g~Ef~s~i~~i~   95 (515)
T TIGR03140        77 RFAGIPGGHEFTSLVLAIL   95 (515)
T ss_pred             EEEecCCcHHHHHHHHHHH
Confidence            8889888888888888765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=93.76  E-value=0.83  Score=32.71  Aligned_cols=30  Identities=37%  Similarity=0.720  Sum_probs=26.2

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhc
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYA  124 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~  124 (182)
                      |.+++.|..|.|+-|+.....++++..+|+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            578999999999999999999987777664

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=93.38  E-value=3.2  Score=33.63  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=47.0

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCC------ChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHH----cC
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPW------CGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK----YG  145 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~w------C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~----~~  145 (182)
                      +..-.+++..-+- +..-+++|-|.+|.+-      =..=+.+...|+++++.-++++.+-.+|.+.+++.+++    ||
T Consensus         7 ~k~ysLS~~T~~~-L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G   85 (271)
T PF09822_consen    7 NKRYSLSDQTKKV-LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG   85 (271)
T ss_pred             CCCccCCHHHHHH-HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence            3445566666554 4455678877777654      33334444555666655566899999999887776655    88


Q ss_pred             CCc
Q 030165          146 IRS  148 (182)
Q Consensus       146 I~~  148 (182)
                      |..
T Consensus        86 i~~   88 (271)
T PF09822_consen   86 IQP   88 (271)
T ss_pred             CCc
Confidence            886

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=92.54  E-value=0.73  Score=31.34  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP  169 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~  169 (182)
                      ..++=.|.+..-+..+..-..+.++.+. +.+...+-.+|+.+++++++.++|-++||++=.. -..+.+++|.++
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdls   77 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDLS   77 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecccc
Confidence            3456667788888888877778777665 4566777788999999999999999999976553 335567888764

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=92.38  E-value=2.2  Score=33.59  Aligned_cols=104  Identities=16%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhc----CceEEEEEeCCCCh--------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCG-PCRMIAPAIEELAKEYA----GKVACFKLNTDDSP--------------  138 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~--------------  138 (182)
                      ++.-+++.+.. ....+++++|+|.=..|+ -|-.....+.++.+++.    .+++++.|.+|.+.              
T Consensus        52 l~d~~G~~~~~-~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~  130 (207)
T COG1999          52 LTDQDGKPFTL-KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF  130 (207)
T ss_pred             eecCCCCEeec-cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence            44445555555 223688999999866665 58888888877777765    23444444443221              


Q ss_pred             ---------------HHHHHcCCCc---------------ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          139 ---------------NIATKYGIRS---------------IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       139 ---------------~l~~~~~I~~---------------iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                     ++++.|+|..               --.++++ .+|+....+.+..+++++.+.|+++++
T Consensus       131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~  205 (207)
T COG1999         131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK  205 (207)
T ss_pred             CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence                           2455555542               2224444 489998888888889999999988763

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=92.27  E-value=1.5  Score=38.16  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=63.4

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhH--HHHHHH-HHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-ECCeEEEEEE
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAP--AIEELA-KEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFF-KNGEKKESII  165 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p--~l~~~a-~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~  165 (182)
                      +.++.++|.|.+-.-....+|..  ..+... +.+...+..++|+..  ...++..-|.+-.+|.++++ ++|..+....
T Consensus        16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit   95 (506)
T KOG2507|consen   16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT   95 (506)
T ss_pred             hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence            45667777777776777666663  223322 333333444555543  34567888999999999888 7999999999


Q ss_pred             cCCCHHHHHHHHHHHh
Q 030165          166 GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       166 G~~~~~~l~~~l~~~l  181 (182)
                      |....++|..-|++.+
T Consensus        96 g~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   96 GFVTADELASSIEKVW  111 (506)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999998888753

>PRK09301 circadian clock protein KaiB; Provisional

Probab=91.86  E-value=1.1  Score=31.37  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=58.7

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP  169 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~  169 (182)
                      ...++=.|.+..-+..+.....+.++.+. +.+...+-.+|+.+++++++.++|-++||++=.. -..+.+++|.++
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDls   80 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLS   80 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccc
Confidence            45677788888888888888888887665 4566777788999999999999999999976553 335667888764

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=91.74  E-value=0.18  Score=38.71  Aligned_cols=39  Identities=28%  Similarity=0.513  Sum_probs=30.8

Q ss_pred             CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       136 ~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++.+.+.++||.++||+++  ||+.  .+.|..+.+.|.+.|+
T Consensus       163 ~~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~  201 (201)
T cd03024         163 ADEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR  201 (201)
T ss_pred             HHHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence            3456778899999999988  7753  4789999999887763

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=90.54  E-value=4.4  Score=28.27  Aligned_cols=94  Identities=7%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             EEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE--
Q 030165           79 QVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF--  155 (182)
Q Consensus        79 ~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f--  155 (182)
                      .++ +.++++..+...+..++|-|+..-=+   .....|.++|..+.....|+...   +..+..++++.. |.+++|  
T Consensus         3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~rp   75 (107)
T cd03068           3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQP   75 (107)
T ss_pred             eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEECc
Confidence            344 45567764444425666666655333   35667889999997778886443   347788888864 566666  


Q ss_pred             -----ECCeEEEEEEcC-CCHHH-HHHHHHH
Q 030165          156 -----KNGEKKESIIGA-VPKST-LSSTLDK  179 (182)
Q Consensus       156 -----~~G~~v~~~~G~-~~~~~-l~~~l~~  179 (182)
                           +=......+.|. .+.++ |..||..
T Consensus        76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                 211223344666 56545 9999864

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=89.55  E-value=3  Score=26.68  Aligned_cols=71  Identities=15%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEE--CCeEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFK--NGEKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~--~G~~v~~~~G~~~~~~l  173 (182)
                      +..|+.++|++|++.+-.+.+..      +.+-.++.+.  ..++ ..-+-..+|+++.-.  +|+.      ......+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~g------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I   68 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHG------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI   68 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCC------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence            45678899999999986666553      3333334332  2233 334567899987542  2321      2345667


Q ss_pred             HHHHHHHh
Q 030165          174 SSTLDKYV  181 (182)
Q Consensus       174 ~~~l~~~l  181 (182)
                      .++|++.|
T Consensus        69 ~~yL~~~~   76 (77)
T cd03040          69 ISTLKTYL   76 (77)
T ss_pred             HHHHHHHc
Confidence            78887765

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=1.3  Score=29.35  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=37.4

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--------------hH--HHHHcCCCcccEEEEEECCeEEE
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--------------PN--IATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--------------~~--l~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      +.|++..||.|..+...|+++.      +.+-.|++...              ++  -++..|--+||.++. .||+++.
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl   77 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL   77 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence            5699999999988777776653      33344554322              11  245567789999865 4776654

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=89.19  E-value=0.39  Score=36.46  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=27.9

Q ss_pred             hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       138 ~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      .+.+.++||.++||+++  ||+   .+.|....+.+.+.|
T Consensus       157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l  191 (192)
T cd03022         157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL  191 (192)
T ss_pred             HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence            35678899999999988  775   557888888777765

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=88.90  E-value=6.6  Score=27.90  Aligned_cols=101  Identities=11%  Similarity=0.132  Sum_probs=69.7

Q ss_pred             cChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHH----HcCCC-cccEE
Q 030165           81 VTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIAT----KYGIR-SIPTV  152 (182)
Q Consensus        81 l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~----~~~I~-~iPTl  152 (182)
                      ++.+++.+.=. ..+...+|-|--+--+.-.+|.++++++|+++..  ++.|+.||-|+-+-+..    -|+|. .=|-+
T Consensus         6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqI   85 (120)
T cd03074           6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQI   85 (120)
T ss_pred             ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCce
Confidence            44444444222 3457788889988899999999999999999864  59999999999887653    36665 23766


Q ss_pred             EEEE--CCeEE-EEEE---cCCCHHHHHHHHHHHh
Q 030165          153 LFFK--NGEKK-ESII---GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~--~G~~v-~~~~---G~~~~~~l~~~l~~~l  181 (182)
                      =++.  +...+ -...   ...+.++|.+||+..|
T Consensus        86 GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          86 GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             eeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            6652  22211 2222   2357899999999865

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.84  E-value=0.84  Score=35.78  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEEc--CCCHHHHHHHHHHHh
Q 030165          139 NIATKYGIRSIPTVLFFKNGEKKESIIG--AVPKSTLSSTLDKYV  181 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G--~~~~~~l~~~l~~~l  181 (182)
                      .++++.|+.++||+++-+||+..---.|  ..+++.+..++.+.+
T Consensus       165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~  209 (212)
T COG3531         165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL  209 (212)
T ss_pred             HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence            4778999999999999999987666566  457788888887765

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=88.79  E-value=0.89  Score=28.86  Aligned_cols=57  Identities=11%  Similarity=0.120  Sum_probs=37.5

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEECCeE
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-SPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +.|+.+||++|++..-.+++..-    .+.+..+|... .+++.+......+|++.. .||..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~   59 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV   59 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence            45789999999988777665532    24555666543 345666667789999954 24543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=88.73  E-value=0.54  Score=32.59  Aligned_cols=75  Identities=11%  Similarity=0.143  Sum_probs=41.1

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccEEEEE-ECCeEEEEE----EcCCC
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYGIRSIPTVLFF-KNGEKKESI----IGAVP  169 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~I~~iPTl~~f-~~G~~v~~~----~G~~~  169 (182)
                      ..|+.++|+.|++....|++.      ++.+-.+|+.+++    ++.+-.+-.+.+.--++ ++|......    ...++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls   75 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS   75 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence            568899999999998777764      3556666665432    33333333333332233 233221111    23456


Q ss_pred             HHHHHHHHHH
Q 030165          170 KSTLSSTLDK  179 (182)
Q Consensus       170 ~~~l~~~l~~  179 (182)
                      .+++.++|.+
T Consensus        76 ~~e~~~~l~~   85 (105)
T cd02977          76 DEEALELMAE   85 (105)
T ss_pred             HHHHHHHHHh
Confidence            6666666643

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional

Probab=88.51  E-value=0.92  Score=35.70  Aligned_cols=41  Identities=24%  Similarity=0.516  Sum_probs=31.9

Q ss_pred             ChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       137 ~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++.++++|+|+.+|+|++. .+...+++.|..+.++-.+.+.
T Consensus       151 DP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA  191 (212)
T PRK13730        151 DPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVA  191 (212)
T ss_pred             CHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHH
Confidence            6889999999999999997 4455678889888655554443

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=87.78  E-value=7.2  Score=27.79  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             HHHHHcCCCccc--EEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          139 NIATKYGIRSIP--TVLFFKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       139 ~l~~~~~I~~iP--Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      .+.++|++..-.  .+++=|||++..++....+.++|.+.|+++
T Consensus        68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence            688899966333  344448999999999999999999999863

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=87.21  E-value=0.18  Score=33.89  Aligned_cols=53  Identities=17%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             EEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165          101 FWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus       101 F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      |-+..-+..+.....++.+.+. +++...+-.+|+.+++++++.++|-++||++
T Consensus         3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi   56 (82)
T PF07689_consen    3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI   56 (82)
T ss_dssp             EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence            3444445556666677777766 4567889999999999999999999999975

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=87.02  E-value=1  Score=27.28  Aligned_cols=54  Identities=11%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh--HHHHHcCCCcccEEEEEECCe
Q 030165          100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP--NIATKYGIRSIPTVLFFKNGE  159 (182)
Q Consensus       100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~--~l~~~~~I~~iPTl~~f~~G~  159 (182)
                      .|+.++|+.|++..-.++...-    .+....++.++..  ++.+..+-..+|++..  +|+
T Consensus         3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~   58 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGL   58 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCE
Confidence            5778999999988877766632    2344445544332  2455667789998865  454

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=86.89  E-value=3.9  Score=26.37  Aligned_cols=70  Identities=16%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      +..++.++|++|++.+-.+++..      +.+-.++++..    +++.+.-+-..+|+++.-.+| ..     ......+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~-----l~es~~I   69 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQ-----MFESADI   69 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eE-----EEcHHHH
Confidence            45677889999998887776653      33333444432    233333355789998542233 21     1244556


Q ss_pred             HHHHHH
Q 030165          174 SSTLDK  179 (182)
Q Consensus       174 ~~~l~~  179 (182)
                      .++|++
T Consensus        70 ~~yL~~   75 (77)
T cd03041          70 VKYLFK   75 (77)
T ss_pred             HHHHHH
Confidence            676664

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.79  E-value=2.8  Score=36.10  Aligned_cols=99  Identities=13%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.+..++.+-.++...-.+..-+=-|++-.|..|-..-..+.-++-.. .++.-..+|-..-++-.+.-+|-++||+++
T Consensus        97 ~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN-p~I~H~~IdGa~Fq~Evear~IMaVPtvfl  175 (520)
T COG3634          97 GGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN-PRIKHTAIDGALFQDEVEARNIMAVPTVFL  175 (520)
T ss_pred             cCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC-CCceeEEecchhhHhHHHhccceecceEEE
Confidence            4455556666666633335556677778888999988887777666444 468888998877777777789999999866


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                        ||++  .-.|.++.+++.+.|+
T Consensus       176 --nGe~--fg~GRmtleeilaki~  195 (520)
T COG3634         176 --NGEE--FGQGRMTLEEILAKID  195 (520)
T ss_pred             --cchh--hcccceeHHHHHHHhc
Confidence              8876  4457788887776664

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=86.41  E-value=3.3  Score=26.04  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=30.3

Q ss_pred             EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165          100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus       100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .++.++|++|++.+-.+....-.    +..+.++.+......+..+-..+|++..
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~~   53 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILEK   53 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEEe
Confidence            56788999999887776655322    2333444433333334445567898843

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=86.34  E-value=1.6  Score=30.90  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=26.2

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP  138 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~  138 (182)
                      ..|+.++|+.|+.....|++.      ++.+-.+|..+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence            468899999999999888773      3677777776554

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=86.29  E-value=1.1  Score=28.22  Aligned_cols=52  Identities=15%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEE
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~~  154 (182)
                      ..|+.++|++|+..+-.+++..-.    .....++...    .+++.+...-..+|++..
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~   57 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL   57 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence            457889999999998887766322    3344555422    344555566778999965

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=84.32  E-value=1.8  Score=30.43  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP  138 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~  138 (182)
                      ..|+.++|+.|++....|++-      ++.|-.+|+.+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~   35 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP   35 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence            468899999999998888763      3666677765543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=84.26  E-value=3  Score=31.74  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCC-hhhhhhhHHHHHHHHHhc---CceEEEEEeCCC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWC-GPCRMIAPAIEELAKEYA---GKVACFKLNTDD  136 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC-~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~  136 (182)
                      ++..++..+.. ..-.++++||.|.=..| ..|-.....+.++.+++.   .++.++.|.+|-
T Consensus        37 L~d~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP   98 (174)
T PF02630_consen   37 LTDQDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP   98 (174)
T ss_dssp             EEETTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred             EEcCCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence            34444444443 22368999999998888 578888888877777664   358888887764

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=83.62  E-value=2.3  Score=30.94  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP  138 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~  138 (182)
                      +..|+.+||+.|++....|++.      ++.+-.+|+.+++
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence            5578899999999988777654      2556666665443

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=81.94  E-value=3.9  Score=25.61  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      ..|+.++|+.|++..-.+++..-.    .....+|.+.. +++.+......+|++.  .+|..      ......+.++|
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL   69 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL   69 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence            467889999999998777655333    33334454433 3445555567899774  34422      12344566666


Q ss_pred             HH
Q 030165          178 DK  179 (182)
Q Consensus       178 ~~  179 (182)
                      ++
T Consensus        70 ~~   71 (73)
T cd03059          70 DE   71 (73)
T ss_pred             Hh
Confidence            54

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=81.66  E-value=2.2  Score=29.83  Aligned_cols=41  Identities=15%  Similarity=0.065  Sum_probs=28.3

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-------HHHHHcC
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-------NIATKYG  145 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-------~l~~~~~  145 (182)
                      ..|+.+||+.|++....|++-      ++.+-.+|..+++       .+.+++|
T Consensus         2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g   49 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVG   49 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence            568899999999988777765      3555566665443       3455555

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=81.25  E-value=8.7  Score=29.32  Aligned_cols=105  Identities=13%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC--------CChH----HHHH
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD--------DSPN----IATK  143 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d--------~~~~----l~~~  143 (182)
                      .+..++++.+.- -.-.++.+||.=-|+-|+.-..--..|.++.++|..+ +.++..-+.        .+.+    +..+
T Consensus        18 ~~~d~~G~~v~l-~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r   96 (171)
T KOG1651|consen   18 SAKDLDGEYVSL-SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVR   96 (171)
T ss_pred             EEecCCCCCccH-HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhc
Confidence            345555544332 3347889999999999999885556888888888643 444444332        1112    2233


Q ss_pred             cCCC-----------------------------------cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          144 YGIR-----------------------------------SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       144 ~~I~-----------------------------------~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+..                                   .+=-+++-+||+.+.|+.-..++.+++.-|+++|.
T Consensus        97 ~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~  170 (171)
T KOG1651|consen   97 YGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA  170 (171)
T ss_pred             cCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence            3331                                   12235555899999999877788888888888873

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.51  E-value=2.3  Score=36.10  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=45.6

Q ss_pred             eEEEEEeCCCChHHHHHcCCCcccEEEEEE--CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          127 VACFKLNTDDSPNIATKYGIRSIPTVLFFK--NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       127 v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~--~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ...+..|..+.+.+.+-|.+..+|.+.+++  -|+.+.+..|..++++|..-++++|
T Consensus       133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi  189 (356)
T KOG1364|consen  133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI  189 (356)
T ss_pred             EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence            334456666778899999999999888884  7999999999999999998888876

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=80.15  E-value=2.4  Score=29.52  Aligned_cols=57  Identities=19%  Similarity=0.452  Sum_probs=40.4

Q ss_pred             EEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEE-EECCe
Q 030165          101 FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPTVLF-FKNGE  159 (182)
Q Consensus       101 F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPTl~~-f~~G~  159 (182)
                      ||..+|+-|......+++.  +..+.+.|+.+..+...++.+.+++.  ..-+.++ .++|+
T Consensus         2 ~YDg~C~lC~~~~~~l~~~--d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~   61 (114)
T PF04134_consen    2 FYDGDCPLCRREVRFLRRR--DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE   61 (114)
T ss_pred             EECCCCHhHHHHHHHHHhc--CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence            7899999999999888877  22345777766555666667788876  4555555 46886

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		7e-43
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		4e-42
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		7e-42
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		3e-35
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		6e-31
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		4e-27
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		4e-27
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		5e-27
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		5e-27
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		5e-27
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		8e-27
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		9e-27
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		1e-26
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-26
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		1e-26
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		2e-26
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-26
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		2e-26
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-26
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		2e-26
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		2e-26
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		3e-26
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		3e-26
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		4e-26
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		4e-26
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		6e-26
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		7e-26
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		9e-26
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		2e-25
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		2e-25
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		2e-24
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		4e-24
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		5e-24
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		6e-24
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		7e-24
2o7k_A	107	S. Aureus Thioredoxin Length = 107		7e-24
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		8e-24
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		1e-23
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		2e-23
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		2e-23
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		7e-23
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		7e-23
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		1e-22
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		1e-22
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		1e-22
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		3e-22
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		4e-22
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		7e-22
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		7e-22
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		7e-22
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		1e-21
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		4e-21
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		5e-21
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		1e-20
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		1e-20
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		4e-20
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		4e-20
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		5e-20
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		1e-19
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		2e-19
3tco_A	109	Crystallographic And Spectroscopic Characterization		4e-19
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		1e-17
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		2e-17
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		7e-17
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		8e-17
1thx_A	115	Thioredoxin-2 Length = 115		2e-16
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		8e-16
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		8e-16
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		2e-15
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		2e-15
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-15
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		6e-15
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		6e-15
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		1e-14
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		3e-14
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		6e-14
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		7e-14
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		8e-14
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		2e-13
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		2e-13
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		8e-13
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		1e-12
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		1e-12
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		1e-12
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		2e-12
1ep8_A	112	Crystal Structure Of A Mutated Thioredoxin, D30a, F		2e-12
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		3e-12
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		4e-12
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		6e-12
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		6e-12
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		7e-12
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		7e-12
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-11
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-11
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-11
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		2e-11
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		3e-11
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		4e-11
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		4e-11
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		5e-11
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		5e-11
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		6e-11
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		7e-11
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		7e-11
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		8e-11
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		1e-10
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		2e-10
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		2e-10
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		2e-10
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		2e-10
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		2e-10
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		3e-10
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		3e-10
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		5e-10
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		2e-09
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		4e-09
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		5e-09
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		6e-09
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		6e-09
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		8e-09
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-08
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		3e-08
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-08
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		3e-08
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		3e-08
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		4e-08
3ul3_B	128	Structural Insights Into Thioredoxin-2: A Component		4e-08
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		5e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		6e-08
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		8e-08
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		1e-07
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		1e-07
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		2e-07
3gnj_A	111	The Crystal Structure Of A Thioredoxin-Related Prot		2e-07
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-07
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		3e-07
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		9e-06
2lja_A	152	Solution Structure Of A Putative Thiol-Disulfide Ox		9e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-04
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		1e-04
1fo5_A	85	Solution Structure Of Reduced Mj0307 Length = 85		4e-04

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 94/105 (89%)
Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD+
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 93/105 (88%)
Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           EVQ V DSSW+  V+ SE PV+V+FWAPWCGP ++IAP I+ELAKEY+GK+A +KLNTD+
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 92/103 (89%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD++P
Sbjct: 2   QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct: 62  GIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 86/105 (81%)
Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           E   V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           SPN+A++YGIRSIPT++ FK G+K E+IIGAVPK+T+  T++KY+
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 78/101 (77%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD ++E  V+ S+ PVLV+FWAPWCGPCRMIAP IEELAKEY GKV   K+N D++PN 
Sbjct: 6   VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A +YGIRSIPT+L FKNG+  + ++GA PK  L   +DK++
Sbjct: 66  AAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 69/98 (70%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIRSIPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 17  LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 77  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 114

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S+E  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP +EE+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A+EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 71/103 (68%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLD 104

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 71/103 (68%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLD 104

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++++A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNG+   + +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFLD 104

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A +Y GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 70/103 (67%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            +P  A KYGIR IPT+L FKNGE     +GA+ K  L   LD
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFLD 104

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD S+E  V+ ++ PVLV+FWA WCGPCR IAP++E +A EY  K+   KLN D++P  
Sbjct: 10  VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KYG+ SIPT+  ++ GE  ++I+GA PK+ +   L+ ++
Sbjct: 70  AAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR  PT+L FKNGE   + +GA+ K  L   LD
Sbjct: 68  APKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFLD 105

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +T+ S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGP +MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 27  LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 87  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 124

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCG C+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGP +MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WCGPC++IA  ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCG-PCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
           +TD S++  V+ ++  +LV+FWA WCG PC+MIAP ++E+A EY GK+   KLN D +P 
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 66/98 (67%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  ++ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KY  R IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WC  C+MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P  
Sbjct: 5   LTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
            +++GI SIPT++ FK GE  + +IG  PK  L + L
Sbjct: 64  TSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P  
Sbjct: 5   LTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
            +++GI SIPT++ FK GE  + +IG  PK  L + L
Sbjct: 64  TSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 14/112 (12%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGP--------------CRMIAPAIEELAKEYAGK 126
           +TD S++  V+ ++  +LV+FWA WCGP              C+MIAP ++E+A EY GK
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 127 VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           +   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 68  LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 119

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ 
Sbjct: 9   VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPST 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 67  AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD S++  V+ ++  +LV+FWA WC   +MIAP ++E+A EY GK+   KLN D +P  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           V+DSS++  V+ +   VLV+FWA WCGPC+MI PA+ E+ KE+AGKV   K+N DD+P  
Sbjct: 7   VSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPET 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS 175
              Y +RSIPT++  ++G+  +  +GA+PKS L +
Sbjct: 67  PNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKA 101

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P  
Sbjct: 5   LTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
            +++GI SIPT++ FK G   + +IG  PK  L + L
Sbjct: 64  TSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P  
Sbjct: 5   LTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
            +++GI SIPT++ FK G   + +IG  PK  L + L
Sbjct: 64  TSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+ +++ V S     LV+FWA WCG C+MIAP +EELA +Y GK    KL+ D++P+ 
Sbjct: 9   VTDADFDSKVESGVQ--LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPST 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 67  AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+ +++ V S     LV+FWA WCG C+MIAP +EELA +Y GK    KL+ D++P+ 
Sbjct: 8   VTDADFDSKVESGVQ--LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPST 65
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 66  AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 81  VTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
           VTD +++  +   ++P VLV+FWA WC PCR IAP +EE+AKEY GK+   KL+ D++P 
Sbjct: 7   VTDQNFDETL--GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            A +Y + SIPTV+ FK+G+  E ++GA PK    + ++K++
Sbjct: 65  TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 106

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 81  VTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
           VTD +++  +   ++P VLV+FWA WC PCR IAP +EE+AKEY GK+   KL+ D++P 
Sbjct: 6   VTDQNFDETL--GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            A +Y + SIPTV+ FK+G+  E ++GA PK    + ++K++
Sbjct: 64  TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 105

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+ +++ V S     LV+FWA  CGPC+MIAP +EELA +Y GK    KL+ D++P+ 
Sbjct: 8   VTDADFDSKVESGVQ--LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPST 65
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 66  AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 98  LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157
           LV+F+APWCGPCR+++P +EELA+++AG++   K+N D+ P +A +YG+RS+PT++ F+ 
Sbjct: 54  LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 158 GEKKESIIGAVPKSTLSSTLDKYVE 182
           G    + +GA P+  L   L  Y+E
Sbjct: 114 GAPVATWVGASPRRVLEERLRPYLE 138

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  
Sbjct: 12  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 71
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct: 72  ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 91  ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP 150
           I+    V+V+FWA WC PC ++AP IEELA +Y  +VA  KLNT++S +IA +YGI S+P
Sbjct: 20  ITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQDIAMRYGIMSLP 78
Query: 151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           T++FFKNGE  + I+GAVP+  +   L   +E
Sbjct: 79  TIMFFKNGELVDQILGAVPREEIEVRLKSLLE 110

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+ +++ V S     LV+FWA WCG  +MIAP +EELA +Y GK    KL+ D++P+ 
Sbjct: 9   VTDADFDSKVESGVQ--LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPST 66
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 67  AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  
Sbjct: 17  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 76
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct: 77  ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 61/90 (67%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           +SE  VL +FWAPWCGPC+MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT
Sbjct: 15  TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPT 74
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +L  K+GE  E+ +G  PK  L   ++K++
Sbjct: 75  LLVLKDGEVVETSVGFKPKEALQELVNKHL 104

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 91  ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP 150
           ++S    +V+FWA WC PC ++AP IEELA++Y  +V   KLN+D++P+IA +YG+ S+P
Sbjct: 13  LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDIAARYGVMSLP 71
Query: 151 TVLFFKNGEKKESIIGAVPKSTLS 174
           TV+FFK+GE  + IIGAVP+  + 
Sbjct: 72  TVIFFKDGEPVDEIIGAVPREEIE 95

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+S+   V+SS  PVLV+FWA WCGP +M+AP +EE+A E A  +   KL+ D +P  
Sbjct: 14  VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPET 73
Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct: 74  ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 114

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 60/90 (66%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           +SE  VL +FWAPWCGP +MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT
Sbjct: 15  TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPT 74
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +L  K+GE  E+ +G  PK  L   ++K++
Sbjct: 75  LLVLKDGEVVETSVGFKPKEALQELVNKHL 104

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
           ++  + P +++FWAPWCGPCR  AP   E A E AGKV   K+NT+  P ++T++ IRSI
Sbjct: 51  LLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSI 110
Query: 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           PT+  ++NG+  + + GAVPK+   + LD+ +
Sbjct: 111 PTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQL 142

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 62/90 (68%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
             + P +V+F+A WCGPC+M+AP ++ELAKEY G++  +K++T+    +A  +GIRSIP+
Sbjct: 36  EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +LF     K E   GA+PK++    +D+++
Sbjct: 96  ILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           +SE  VL +FWAPWCGP +MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT
Sbjct: 15  TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPT 74
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           +L  K+GE  E+ +G  PK  L   ++K
Sbjct: 75  LLVLKDGEVVETSVGFKPKEALQELVNK 102

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%)
Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152
            + P +V+F+A WCGPC+M+AP +EEL+KEYAGK+  +K+N D  P +A  +GI+SIPT+
Sbjct: 50  GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 153 LFFKNGEKKESIIGAVPKSTLSSTLDK 179
            F     + +  +GA+ K  L   +DK
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYIDK 136

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152
            + P +V+F+A WCGPC+M+AP +EEL+KEYAGK+  +K+N D  P +A  +GI+ IPT+
Sbjct: 50  GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 153 LFFKNGEKKESIIGAVPKSTLSSTLDK 179
            F     + +  +GA+ K  L   +DK
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYIDK 136

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNT 134
             VQV++       V   +  V+++FWA WCGPC+MI P  E+++   AG KV  +K++ 
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDV 74
Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           D+   IA + GIR++PT +FFKNG+K ++++GA P S L + + ++
Sbjct: 75  DEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADP-SKLQAAITQH 119

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
           V+T+ +++  VI +   VLV+ WA WC PC +  P  +++A++Y GK    +LN D++  
Sbjct: 8   VLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK 66
Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           IA KY + +IPT L F NG+  +S++GAV + TL ST++KY++
Sbjct: 67  IADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD+ ++A KYGI
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDAQDVAPKYGI 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           R IPT+L FKNGE   + +GA+ K  L   LD
Sbjct: 72  RGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 103

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 62/97 (63%)
Query: 85  SWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY 144
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y
Sbjct: 22  DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 145 GIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct: 82  EVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q+ + S +++ + S +  V+V+F+A WCGPC+MIAP IE+ A++Y+   A +KL+ D+  
Sbjct: 11  QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 69
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           ++A K  + S+PT++F+K G++   ++GA P +
Sbjct: 70  DVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAA 102

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q+ + S +++ + S +  V+V+F+A WCGPC+MIAP IE+ A++Y+   A +KL+ D+  
Sbjct: 4   QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 62
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           ++A K  + S+PT++F+K G++   ++GA P +
Sbjct: 63  DVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAA 95

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D +
Sbjct: 9   VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN 68
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           P    KY +  +P +   K  +  +S  G + K  L S LD ++
Sbjct: 69  PTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q+ + S +++ + S +  V+V+F+A WCGP +MIAP IE+ A++Y+   A +KL+ D+  
Sbjct: 12  QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 70
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVP 169
           ++A K  + S+PT++F+K G++   ++GA P
Sbjct: 71  DVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 101

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q+ + S +++ + S +  V+V+F+A WCGP +MIAP IE+ A++Y+   A +KL+ D+  
Sbjct: 4   QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVS 62
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVP 169
           ++A K  + S+PT++F+K G++   ++GA P
Sbjct: 63  DVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 88  NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR 147
            L  +S   V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+  +IA +Y I 
Sbjct: 19  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 148 SIPTVLFFKNGEKKESIIGAVPK 170
           S+PT +F KNG K E   GA  K
Sbjct: 79  SMPTFVFLKNGVKVEEFAGANAK 101

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 88  NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR 147
            L  +S   V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+  +IA +Y I 
Sbjct: 14  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 148 SIPTVLFFKNGEKKESIIGAVPK 170
           S+PT +F KNG K E   GA  K
Sbjct: 74  SMPTFVFLKNGVKVEEFAGANAK 96

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF 155
           P+LV+FWAPWCGPCR +AP  +  A   AG+V   K++T   P +A ++ I+ IP  + F
Sbjct: 66  PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 156 KNGEKKESIIGAVPKSTL 173
             G +     GA P S L
Sbjct: 126 HKGRELARAAGARPASEL 143

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q  T S +++  I+ +  V+V+F+A WCGPC+MIAP IE+ +++Y  +   +KL+ D+  
Sbjct: 4   QFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 61
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           ++A K  + ++PT+L FKNG++   ++GA P +
Sbjct: 62  DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAA 94

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q  T S +++  I+ +  V+V+F+A WCGPC+MIAP IE+ +++Y  +   +KL+ D+  
Sbjct: 10  QFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           ++A K  + ++PT+L FKNG++   ++GA P +
Sbjct: 68  DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAA 100

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           V+++F A WCGPCR IAP   E AK++ G V   K++ D+   +A KY + ++PT LF K
Sbjct: 39  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 157 NGEKKESIIGAVPKSTLSSTLDKYV 181
           +G + + ++GA  K  L +T+ K+V
Sbjct: 98  DGAEADKVVGA-RKDDLQNTIVKHV 121

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           V+++F A WCGPCR+IAP   E AK++ G +   K++ D+  ++A  Y + ++PT LF K
Sbjct: 31  VIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDELKDVAEAYNVEAMPTFLFIK 89
Query: 157 NGEKKESIIGA 167
           +GEK +S++G 
Sbjct: 90  DGEKVDSVVGG 100

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
           Q  T S +++  I+ +  V+V+F+A WCGP +MIAP IE+ +++Y  +   +KL+ D+  
Sbjct: 10  QFKTASEFDS-AIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
           ++A K  + ++PT+L FKNG++   ++GA P +
Sbjct: 68  DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAA 100

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V++VT  +  + +IS    V+V+F+A WCGPC+ IAP  EE +K Y  K+   K++ D+ 
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEV 68
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
             +  K  I S+PT   +KNG   ++++GA   S L   ++KY
Sbjct: 69  SEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           V+++F+A WCGPC+MIAP +EEL++  +  V   K++ D+  +IA    I  +PT LF K
Sbjct: 23  VVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECEDIAQDNQIACMPTFLFMK 81
Query: 157 NGEKKESIIGA 167
           NG+K +S+ GA
Sbjct: 82  NGQKLDSLSGA 92

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           + L  S   PVL  FW+     C  + P +E LA +Y G+    KL+ D    IA ++G+
Sbjct: 19  QTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGL 78
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           R+IPTV  F+NG+  +   G  P+  + + LDK
Sbjct: 79  RAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDK 111

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 93  SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152
           S+  V+V+F A WCGPCR IAP   +LAK+    V   K++TD+  ++A+ + I+++PT 
Sbjct: 37  SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPTF 95
Query: 153 LFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +F K G+  + ++GA  K  L ST+ K++
Sbjct: 96  MFLKEGKILDKVVGA-KKDELQSTIAKHL 123

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 78  VQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNTD 135
           +++  D   E+L+   +N  V+V+F+A WCGPC+ IAP  +EL+++Y    A F K++ D
Sbjct: 7   IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVKVDVD 63
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
                A KY I ++PT +  KNGEK   ++GA
Sbjct: 64  KLEETARKYNISAMPTFIAIKNGEKVGDVVGA 95

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 94  ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153
             P++V+F A WCGPC+MIAP  E L+ +YAGKV   K++ D    +A   GI ++PT  
Sbjct: 24  HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFH 83
Query: 154 FFKNGEKKESIIGA 167
            +K+G K + ++GA
Sbjct: 84  VYKDGVKADDLVGA 97

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           +++  V+++F A WCGPCR++AP   +LAK++   V   K++ D+   IA ++ + ++PT
Sbjct: 32  TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPT 90
Query: 152 VLFFKNGEKKESIIGAV 168
            LF K G+ K+ ++GA+
Sbjct: 91  FLFMKEGDVKDRVVGAI 107

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 78  VQVVTDSSWENLVISSENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNTD 135
           +++  D   E+L+   +N  V+V+F+A WCGPC+ IAP  +EL+++Y    A F K++ D
Sbjct: 16  IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVKVDVD 72
Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
                A KY I ++PT +  KNGEK   ++GA
Sbjct: 73  KLEETARKYNISAMPTFIAIKNGEKVGDVVGA 104

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           S   PVL  FW+     C  + P +E LA +Y G+    KL+ D    IA ++G+R+IPT
Sbjct: 24  SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPT 83
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLD 178
           V  F+NG+  +   G  P+  + + LD
Sbjct: 84  VYLFQNGQPVDGFQGPQPEEAIRALLD 110

>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 94  ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153
             P++V F A WCGPC+MIAP  E L+ +YAGKV   K++ D    +A   GI ++PT  
Sbjct: 24  HKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFH 83
Query: 154 FFKNGEKKESIIGA 167
            +K+G K + ++GA
Sbjct: 84  VYKDGVKADDLVGA 97

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD+ ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDAQDVASEAEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           ++ PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KATPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           ++V+F+A WCGPCR IAP +E LAKE   +V   K++ D +   A KY + ++PT +F K
Sbjct: 22  IVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 157 NGEKKESIIGAVPKSTLSSTLDKY 180
           +G++ +   GA  ++ L  T+ ++
Sbjct: 81  DGKEVDRFSGA-NETKLRETITRH 103

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAP----AIEELAKEYAGKVACFK 131
            +V  +TD S++  V+ SE+  +VEF+APWCG C+ + P    A  E+ ++  GKV    
Sbjct: 7   GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 132 LNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL-SSTLDKYVE 182
           ++   +  +A++YGIR  PT+  F+ GE      G   +S + S  LD + +
Sbjct: 67  VDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGP +MI P    L+++Y+  V   +++ DDS ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDSQDVASESEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
           +++  V+++F A WCGP R++AP   +LAK++   V   K++ D+   IA ++ + ++PT
Sbjct: 35  TAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPT 93
Query: 152 VLFFKNGEKKESIIGAV 168
            LF K G+ K+ ++GA+
Sbjct: 94  FLFMKEGDVKDRVVGAI 110

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASEXEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 76  NEVQVVTDSSWENLV--ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
           ++V  +TD ++E+ +    S   +LVEF+APWCG C+ +AP  E  A    G V   K++
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
              + N   KYG+   PT+  F++GE+  +  G      + S L K
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKK 106

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L + +++ ++V FWAPW   C  +   + ELAKE   +V+  KL  +  P ++ KY I
Sbjct: 25  ELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEI 83
Query: 147 RSIPTVLFFKNGEKKESIIGA 167
            S+PT LFFKN +K + + GA
Sbjct: 84  SSVPTFLFFKNSQKIDRLDGA 104

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +  PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCTPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 83  DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT 142
           D +W   V  S+ PV+V F++P C  C+   P  EE AKEY       ++N   +P  A 
Sbjct: 13  DXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAE 72
Query: 143 KYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
           KYG++  PT  FF +G      +G +  S L + +
Sbjct: 73  KYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAV 107

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L + +++ ++V FWAPW   C  +   + ELAKE   +V+  KL  +  P ++ KY I
Sbjct: 31  ELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEI 89
Query: 147 RSIPTVLFFKNGEKKESIIGA 167
            S+PT LFFKN +K + + GA
Sbjct: 90  SSVPTFLFFKNSQKIDRLDGA 110

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGP +MI P    L+++Y+  V   +++ DD+ ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSN-VIFLEVDVDDAQDVASEAEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           ++ PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KATPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGP +MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 24  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 82
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 83  KSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 116

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 84  SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK 143
           + + NL I   + ++++F+A WCGPC+M+ P + +L + Y   V   K + D+SP+IA +
Sbjct: 21  TEFRNL-IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPDIAKE 78
Query: 144 YGIRSIPTVLFFKNGEKKESIIGAVPKS 171
             + ++PT +  K+G+    IIGA P +
Sbjct: 79  CEVTAMPTFVLGKDGQLIGKIIGANPTA 106

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V+VV   +++ +V+  +  VL+EF+APWCG C+ + P    L K+Y G+        D +
Sbjct: 9   VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68
Query: 138 PNIAT--KYGIRSIPTVLFFKNGEKKESI 164
            N  T  +Y +   PT+ F  +G+KK  I
Sbjct: 69  ANDITNDQYKVEGFPTIYFAPSGDKKNPI 97

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ +D  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVNDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 71  AREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA---KEYAGKV 127
           A E  + V V+  S++    +++   +LVEF+APWCG C+ +AP   + A   K    ++
Sbjct: 2   APEEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 159
              K++  +  ++A +YG+R  PT+ FF+NG+
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD- 136
           V  +T++++++ +  +E    ++F+APWCG C+ +AP  EEL+K+    +A  K+   D 
Sbjct: 9   VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 66
Query: 137 --SPNIATKYGIRSIPTVLFFKNGEK 160
               NI +KY +R  PT+L F+ G+K
Sbjct: 67  TAERNICSKYSVRGYPTLLLFRGGKK 92

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD- 136
           V  +T++++++ +  +E    ++F+APWCG C+ +AP  EEL+K+    +A  K+   D 
Sbjct: 2   VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 59
Query: 137 --SPNIATKYGIRSIPTVLFFKNGEK 160
               NI +KY +R  PT+L F+ G+K
Sbjct: 60  TAERNICSKYSVRGYPTLLLFRGGKK 85

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD- 136
           V  +T++++++ +  +E    ++F+APWCG C+ +AP  EEL+K+    +A  K+   D 
Sbjct: 7   VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 64
Query: 137 --SPNIATKYGIRSIPTVLFFKNGEK 160
               NI +KY +R  PT+L F+ G+K
Sbjct: 65  TAERNICSKYSVRGYPTLLLFRGGKK 90

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGP +MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KRMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +T  ++   V+  +   +V+F+APWCGPC+  AP  E LA+   GKV   K++    P  
Sbjct: 8   LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 67
Query: 141 ATKYGIRSIPTVLFFKNGEKKESI 164
             K GI++ P+V  ++    K+SI
Sbjct: 68  CQKAGIKAYPSVKLYQYERAKKSI 91

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 92  SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT 151
            S+  ++V+F A WC PC+MIAP   ELAK++   V   K++ D+   +A ++ + ++PT
Sbjct: 24  GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 152 VLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
            +F K+G+  +  +GA  K  L + + K+
Sbjct: 83  FIFLKDGKLVDKTVGA-DKDGLPTLVAKH 110

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 52/96 (54%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           ++ ++DS ++  V    +P+++ F   WC PC+ + P  EE+A +  G +    ++ +D+
Sbjct: 1   LRSLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDA 60
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 173
                +  IR++P++  F +G  +E   G + KS L
Sbjct: 61  EKTMAELNIRTLPSLALFVDGMIREVFSGTMNKSDL 96

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 77  EVQVVTDSSWENLV--ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           +V  +TD ++E+ +    S   +LVEF+APWCG  + +AP  E  A    G V   K++ 
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
             + N   KYG+   PT+  F++GE+  +  G      + S L K
Sbjct: 62  TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKK 106

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA---KEYAGKVACFKL 132
           N V V+ D +++N V + ++ VL+EF+APWCG C+  AP  E++A   K+    +A  K+
Sbjct: 17  NGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75
Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGE 159
           +   +  +A+K+ +   PT+   K G+
Sbjct: 76  DATSASMLASKFDVSGYPTIKILKKGQ 102

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A W GP +MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN-TDDS 137
           +V  D+ W  +  + + PV+++ +  WCGPC+ +AP  E+LA+EY   V   KL+   ++
Sbjct: 22  EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQEN 80
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
             +A + GIR +PT    K      S++G V  +     L+
Sbjct: 81  KTLAKELGIRVVPTFKILKEN----SVVGEVTGAKYDKLLE 117

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN-TDDS 137
           +V  D+ W  +  + + PV+++ +  WCGPC+ +AP  E+LA+EY   V   KL+   ++
Sbjct: 10  EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQEN 68
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
             +A + GIR +PT    K      S++G V  +     L+
Sbjct: 69  KTLAKELGIRVVPTFKILKEN----SVVGEVTGAKYDKLLE 105

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           ++V  +T S++   VI S+   LVEF+APWCG C+ + P  ++ A      V    +N D
Sbjct: 17  DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD 76
Query: 136 DSPNIATKYGIRSIPTV-LFFKNGEKKESIIGA 167
              ++  +YG++  PT+ +F  N  K E   G 
Sbjct: 77  KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGG 109

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELA---KEYAGKVACFKL 132
           N V V+ D++++N V + ++ VL+EF+APWCG C+  AP  E++A   K+    +   K+
Sbjct: 15  NGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGE 159
           +   +  +A+++ +   PT+   K G+
Sbjct: 74  DATSASVLASRFDVSGYPTIKILKKGQ 100

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSPNIATKYGI 146
           V+++ + +LVEF+APWCG C+ +AP  E+ AKE + +   +   K++  +  ++A ++ +
Sbjct: 20  VVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDV 79
Query: 147 RSIPTVLFFKNGE 159
              PT+  F+ G 
Sbjct: 80  SGYPTLKIFRKGR 92

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           E L  + +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD  ++A++  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDXQDVASEXEV 71
Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL-NTDDSPNIATKYG 145
           + +V   +  VLV ++APWCG C+ +AP  +ELA  YA   +   +   D + N      
Sbjct: 369 DEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVV 428
Query: 146 IRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           I   PT++ +  G+K ES++    +S L S  D
Sbjct: 429 IEGYPTIVLYPGGKKSESVVYQGSRS-LDSLFD 460

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V+V+   ++E++    +  V VEF+APWCG C+ +AP  ++L + Y           D +
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 138 PNIATKYGIRSIPTVLFF 155
            N      + S PT+ FF
Sbjct: 311 ANEVEAVKVHSFPTLKFF 328

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           VL  F A WCGPC+ IAP   EL++ Y   +    ++ D+  + +  + I++ PT  F +
Sbjct: 49  VLANFSARWCGPCKQIAPYYIELSENYPS-LMFLVIDVDELSDFSASWEIKATPTFFFLR 107
Query: 157 NGEKKESIIGA 167
           +G++ + ++GA
Sbjct: 108 DGQQVDKLVGA 118

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V+V+   ++E++    +  V VEF+APWCG C+ +AP  ++L + Y           D +
Sbjct: 9   VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 138 PNIATKYGIRSIPTVLFF 155
            N      + S PT+ FF
Sbjct: 69  ANEVEAVKVHSFPTLKFF 86

>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of Malaria Parasite Protein Secretion Machinery Length = 128

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 91  ISSENPVLV-EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
           ++ +N V+V  F+A WC  C M +  +++L K Y  ++   K++ D + ++A K+ ++S+
Sbjct: 38  VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSL 97
Query: 150 PTVLFFKN 157
           PT++  KN
Sbjct: 98  PTIILLKN 105

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-------VACF 130
           V VV   ++  +V+     VL+EF+APWCG C+ +AP  EEL   YA         +A  
Sbjct: 9   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 131 KLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
               +D P+      I+  PT+  +  G K + +
Sbjct: 69  DATANDVPD-----EIQGFPTIKLYPAGAKGQPV 97

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           +T  ++   V+  +   +V+F+APW GP +  AP  E LA+   GKV   K++    P  
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 721
Query: 141 ATKYGIRSIPTVLFFKNGEKKESI 164
             K GI++ P+V  ++    K+SI
Sbjct: 722 CQKAGIKAYPSVKLYQYERAKKSI 745

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN-TDDS 137
           +V  D+ W  +  + + PV+++ +  WCGP + +AP  E+LA+EY   V   KL+   ++
Sbjct: 9   EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQEN 67
Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
             +A + GIR +PT    K      S++G V  +     L+
Sbjct: 68  KTLAKELGIRVVPTFKILKEN----SVVGEVTGAKYDKLLE 104

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 82  TDSSWENLVISSENPVLVEFWAPWCGPCR---MIAPAIEELAKEYAGKVACFKLNTDDSP 138
           T  +  N +  +   VLV+F+A WCGPC+    I P+I E  K+    V   K++ D + 
Sbjct: 11  THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDVDKNG 66
Query: 139 NIATKYGIRSIPTVLFFK 156
           N A  YG+ SIP + F K
Sbjct: 67  NAADAYGVSSIPALFFVK 84

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
           VL  F A WCGP R IAP   EL++ Y   +    ++ D+  + +  + I++ PT  F +
Sbjct: 49  VLANFSARWCGPSRQIAPYYIELSENYPS-LMFLVIDVDELSDFSASWEIKATPTFFFLR 107
Query: 157 NGEKKESIIGA 167
           +G++ + ++GA
Sbjct: 108 DGQQVDKLVGA 118

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD 136
           V+V+TD +W  L+   E   ++EF+APWC  C+ + P  E  A+     +V   K++  +
Sbjct: 9   VRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE 65
Query: 137 SPNIATKYGIRSIPTVLFFKNGE 159
            P ++ ++ I ++PT+   K+GE
Sbjct: 66  QPGLSGRFIINALPTIYHCKDGE 88

>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein From Desulfitobacterium Hafniense Dcb Length = 111

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 84  SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK 143
           +++E L+       LV F    C  C+ + P +EEL   Y      + ++ ++   +  +
Sbjct: 12  NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 144 YGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 177
           + ++ +P +L+FK+GE K    G V    +   +
Sbjct: 72  FSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXI 105

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V+VV   +++ +V +    VL+EF+APWCG C+ + P  +EL ++ +          D +
Sbjct: 29  VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 138 PN-IATKYGIRSIPTVLF 154
            N + + Y +R  PT+ F
Sbjct: 89  ANDVPSPYEVRGFPTIYF 106

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            +  +T  S++  + ++    LVEF+APWCG C+ ++    + AK   G V    +N D 
Sbjct: 18  HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDL 77
Query: 137 SPNIA--TKYGIRSIPTVLFFK 156
           + N A   KY +   PT++ F+
Sbjct: 78  NKNKALCAKYDVNGFPTLMVFR 99

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 91  ISSENPVLVE-FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
           I SE+ + V  F A WCGPC+ I   +E++A E+   V   K++ D++  I +K  +  +
Sbjct: 33  IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQL 91
Query: 150 PTVLFFKNGEKKESIIGAVP 169
           PT +  ++G+    +IGA P
Sbjct: 92  PTFIIARSGKMLGHVIGANP 111

>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK------VACFKLNTDDSPNIATKYGIRSIP 150
           + ++ WA WCGPCR   PA++EL ++YAGK      ++C K N     N+ TK  ++ I 
Sbjct: 33  IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDK-NKKAWENMVTKDQLKGIQ 91
Query: 151 TVLFFKNGEKKESIIGAVPKSTL 173
             +          +I  +P+  L
Sbjct: 92  LHMGTDRTFMDAYLINGIPRFIL 114

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 98  LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN 157
            V F++P C  C  +AP   E AKE  G +    +N  D   +    G+ S P++  F++
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 177
Query: 158 GEKKESIIGAVPKSTL 173
           G       G   K +L
Sbjct: 178 GMAAVKYNGDRSKESL 193

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 81  VTDSSWENL--VISSENPVLVEFWAPWCGPCRMIAPAIEE----LAKEY--AGKVACFKL 132
           +T    EN+  ++++ +  LV F+A WC   + + P  EE    + +E+    +V   ++
Sbjct: 7   ITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNG 158
           + D   +IA +Y I   PT+  F+NG
Sbjct: 67  DCDQHSDIAQRYRISKYPTLKLFRNG 92

>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307 Length = 85

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 101 FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160
           F +P C  C      +EE+A E    V    +N  ++P  A +YGI ++PT++   NG+ 
Sbjct: 9   FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV 66
Query: 161 KESIIGAVPKSTLSSTLDK 179
           +   IGA  K  L   + K
Sbjct: 67  E--FIGAPTKEALVEAIKK 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-64
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	4e-63
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-62
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-60
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	3e-60
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	9e-60
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	3e-59
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	6e-59
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-58
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-58
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-58
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-58
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	7e-58
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	1e-57
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-57
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-57
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	3e-57
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	6e-57
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	7e-57
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	9e-57
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-56
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-56
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-55
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-55
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	7e-55
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	5e-54
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	2e-53
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	3e-52
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-49
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-48
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	2e-47
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-46
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-46
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-46
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	3e-46
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	4e-46
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	7e-46
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-45
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	4e-45
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	7e-45
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-44
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-44
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-44
2l57_A	126	Uncharacterized protein; structural genomics, unkn	3e-44
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	6e-44
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-43
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	2e-43
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	5e-43
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	2e-42
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	6e-42
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-41
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	3e-41
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-41
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	5e-41
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-40
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-40
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-40
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-38
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-37
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-37
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-35
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-34
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	8e-30
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	9e-29
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	5e-28
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	7e-28
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	7e-27
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	8e-27
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	9e-27
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-24
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	1e-24
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	1e-24
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-23
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-19
1mek_A	120	Protein disulfide isomerase; electron transport, r	4e-23
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-22
2qsi_A	137	Putative hydrogenase expression/formation protein;	1e-22
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-22
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	6e-22
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	7e-22
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-21
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-17
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-21
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-20
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-19
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-17
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-21
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-20
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	8e-20
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	4e-19
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	5e-19
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	2e-18
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-18
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-09
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	8e-18
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	2e-17
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-17
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	3e-17
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	5e-17
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	6e-17
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	8e-17
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	1e-16
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	9e-16
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	1e-15
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	1e-15
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-15
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-15
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	3e-15
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-14
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-14
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	2e-14
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	2e-14
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	2e-14
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	4e-14
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	6e-14
3raz_A	151	Thioredoxin-related protein; structural genomics,	1e-13
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	2e-13
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	2e-13
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-13
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	4e-13
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	5e-13
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	1e-12
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-12
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	9e-12
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	2e-12
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-12
2lrt_A	152	Uncharacterized protein; structural genomics, thio	4e-12
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	7e-12
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	1e-11
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	3e-11
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-11
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	4e-11
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	5e-11
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	6e-11
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	7e-11
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	7e-11
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	2e-10
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-10
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	2e-10
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	2e-10
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	2e-10
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	3e-10
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	3e-10
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	9e-10
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	2e-09
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	6e-09
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	7e-09
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	2e-07
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	5e-07
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	7e-07
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	1e-06
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	1e-06
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	2e-06
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	8e-05
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	7e-04

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score =  192 bits (489), Expect = 3e-64
 Identities = 75/105 (71%), Positives = 94/105 (89%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD+
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score =  189 bits (482), Expect = 4e-63
 Identities = 62/105 (59%), Positives = 86/105 (81%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           E   V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           SPN+A++YGIRSIPT++ FK G+K E+IIGAVPK+T+  T++KY+
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score =  188 bits (479), Expect = 2e-62
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query: 74  AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
             + +    D +W   V  S+ PV+V F++P C  C+ + P  EE AKEY       ++N
Sbjct: 4   NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRIN 63

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
              +P  A KYG++  PT  FF +G      +G +  S L + +   ++
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQ 112

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score =  183 bits (466), Expect = 2e-60
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 49  SSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP 108
             C + +           +    +  +  V    +  +   V  +    LV+F+APWCGP
Sbjct: 6   PKCGAKNRLGTPPPGQVPVCGACKTPLPWVVEADEKGFAQEVAGAP-LTLVDFFAPWCGP 64

Query: 109 CRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV 168
           CR+++P +EELA+++AG++   K+N D+ P +A +YG+RS+PT++ F+ G    + +GA 
Sbjct: 65  CRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGAS 124

Query: 169 PKSTLSSTLDKYVE 182
           P+  L   L  Y+E
Sbjct: 125 PRRVLEERLRPYLE 138

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score =  182 bits (463), Expect = 3e-60
 Identities = 62/104 (59%), Positives = 79/104 (75%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V  VTD ++E  V+ S+ PVLV+FWAPWCGPCRMIAP IEELAKEY GKV   K+N D++
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           PN A +YGIRSIPT+L FKNG+  + ++GA PK  L   +DK++
Sbjct: 63  PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score =  180 bits (460), Expect = 9e-60
 Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +   V+T+ +++  VI +   VLV+ WA WC PC +  P  +++A++Y GK    +LN D
Sbjct: 4   DVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD 62

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           ++  IA KY + +IPT L F NG+  +S++GAV + TL ST++KY++
Sbjct: 63  ENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score =  179 bits (456), Expect = 3e-59
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
             ++ VTD S+E  V+ ++ PVLV+FWA WCGPCR IAP++E +A EY  K+   KLN D
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNID 64

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           ++P  A KYG+ SIPT+  ++ GE  ++I+GA PK+ +   L+ ++
Sbjct: 65  ENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score =  178 bits (454), Expect = 6e-59
 Identities = 50/106 (47%), Positives = 72/106 (67%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD  +
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score =  179 bits (455), Expect = 1e-58
 Identities = 38/102 (37%), Positives = 65/102 (63%)

Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
              + + E      + P +V+F+A WCGPC+M+AP ++ELAKEY G++  +K++T+    
Sbjct: 24  YNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE 83

Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           +A  +GIRSIP++LF     K E   GA+PK++    +D+++
Sbjct: 84  LAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score =  178 bits (453), Expect = 2e-58
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 52  SSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRM 111
           S+   PL   +R      +  + V  +Q    S+  N V      +++ F+A WC  C M
Sbjct: 1   STNDDPLTPLNRFDKYYLRMFKKVPRLQQ-NGSNIINGVNMKNTVIVLYFFAKWCQACTM 59

Query: 112 IAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
            +  +++L K Y  ++   K++ D + ++A K+ ++S+PT++  KN          V  +
Sbjct: 60  QSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119

Query: 172 TLSSTLDKY 180
            L + + K+
Sbjct: 120 DLIALIKKH 128

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score =  177 bits (451), Expect = 2e-58
 Identities = 22/105 (20%), Positives = 50/105 (47%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           ++ +  +++E L+       LV F    C  C+ + P +EEL   Y      + ++ ++ 
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEE 65

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
             +  ++ ++ +P +L+FK+GE K  + G V    +   +   +E
Sbjct: 66  KTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE 110

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score =  177 bits (451), Expect = 2e-58
 Identities = 37/107 (34%), Positives = 59/107 (55%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
             V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D
Sbjct: 7   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID 66

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
            +P    KY +  +P +   K  +  +S  G + K  L S LD ++ 
Sbjct: 67  PNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN 113

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score =  177 bits (450), Expect = 7e-58
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 69  CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVA 128
           C       EV   T  + +  ++  + P++++FWAPWCGPCR  AP   E A E AGKV 
Sbjct: 31  CGHSLFDGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVR 89

Query: 129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             K+NT+  P ++T++ IRSIPT++ ++NG+  + + GAVPK+   + LD+ +
Sbjct: 90  FVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL 142

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score =  175 bits (445), Expect = 1e-57
 Identities = 46/102 (45%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD +++   +     VLV+FWA WC PCRMIAP +EE+AKEY GK+   KL+ D++P  
Sbjct: 6   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKT 64

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           A +Y + SIPTV+ FK+G+  E ++GA PK    + ++K++ 
Sbjct: 65  AMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLP 106

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score =  176 bits (447), Expect = 1e-57
 Identities = 49/106 (46%), Positives = 71/106 (66%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGP +MIAP ++E+A EY GK+   KLN D
Sbjct: 22  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNID 81

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD  +
Sbjct: 82  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score =  176 bits (448), Expect = 2e-57
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 69  CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVA 128
           C A     +V    D +        + P+LV+FWAPWCGPCR +AP  +  A   AG+V 
Sbjct: 40  CGAGLITGKV-AGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVR 98

Query: 129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             K++T   P +A ++ I+ IP  + F  G +     GA P S L   +   +
Sbjct: 99  LAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKL 151

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score =  174 bits (444), Expect = 3e-57
 Identities = 34/106 (32%), Positives = 63/106 (59%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
               +     +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ D
Sbjct: 13  TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           D  ++A +Y + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct: 73  DHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score =  173 bits (441), Expect = 6e-57
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
              +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++
Sbjct: 2   TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           P   +++GI SIPT++ FK G   + +IG  PK  L + L   ++
Sbjct: 61  PETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score =  173 bits (440), Expect = 7e-57
 Identities = 45/104 (43%), Positives = 69/104 (66%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
                V+DSS++  V+ +   VLV+FWA WCGPC+MI PA+ E+ KE+AGKV   K+N D
Sbjct: 2   EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID 61

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           D+P     Y +RSIPT++  ++G+  +  +GA+PKS L + ++ 
Sbjct: 62  DNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score =  173 bits (441), Expect = 9e-57
 Identities = 46/101 (45%), Positives = 66/101 (65%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  
Sbjct: 17  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 76

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct: 77  ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score =  173 bits (440), Expect = 1e-56
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 2/120 (1%)

Query: 63  RNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKE 122
           R S            VQV++       V   +  V+++FWA WCGPC+MI P  E+++  
Sbjct: 2   RGSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT 61

Query: 123 YAG-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            AG KV  +K++ D+   IA + GIR++PT +FFKNG+K ++++GA P   L + + ++ 
Sbjct: 62  PAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPS-KLQAAITQHS 120

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score =  171 bits (435), Expect = 5e-56
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           +   TD S+      SE  VL +FWAPWCGP +MIAP +EEL +E   K+   K++ D++
Sbjct: 3   IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
              A KYG+ SIPT+L  K+GE  E+ +G  PK  L   ++K++
Sbjct: 61  QETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score =  173 bits (441), Expect = 2e-55
 Identities = 50/107 (46%), Positives = 72/107 (67%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 12  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 71

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD  + 
Sbjct: 72  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 118

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score =  169 bits (431), Expect = 2e-55
 Identities = 46/104 (44%), Positives = 70/104 (67%), Gaps = 2/104 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           +  VTD+ +++ V S     LV+FWA  CGPC+MIAP +EELA +Y GK    KL+ D++
Sbjct: 5   IVKVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN 62

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct: 63  PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score =  168 bits (427), Expect = 7e-55
 Identities = 43/104 (41%), Positives = 71/104 (68%), Gaps = 2/104 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V  +   ++++  ++S    +V+FWA WC PC ++AP IEELA++Y  +V   KLN+D++
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDEN 58

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           P+IA +YG+ S+PTV+FFK+GE  + IIGAVP+  +   +   +
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score =  167 bits (424), Expect = 5e-54
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 11/123 (8%)

Query: 70  KAREAVNEVQVVTDSSWENLVIS-----------SENPVLVEFWAPWCGPCRMIAPAIEE 118
           +A +  +    +T + +   +              + P +V+F+A WCGPC+M+AP +EE
Sbjct: 16  QAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEE 75

Query: 119 LAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
           L+KEYAGK+  +K+N D  P +A  +GI+SIPT+ F     + +  +GA+ K  L   +D
Sbjct: 76  LSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYID 135

Query: 179 KYV 181
           K +
Sbjct: 136 KVL 138

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score =  165 bits (419), Expect = 2e-53
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 14/120 (11%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGP--------------CRMIAPAIEELAK 121
           +++  +TD S++  V+ ++  +LV+FWA WCGP              C+MIAP ++E+A 
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62

Query: 122 EYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD  +
Sbjct: 63  EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score =  162 bits (412), Expect = 3e-52
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF------ 130
            +  +T   +  L+   +   ++  ++  C  C    P + + +KE    +  F      
Sbjct: 17  RLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLI 73

Query: 131 -KLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            +     +     K G+   PT++F+K G   + ++GA P S       +  
Sbjct: 74  GERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  155 bits (393), Expect = 2e-49
 Identities = 31/105 (29%), Positives = 52/105 (49%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
              +T  ++   V+  +   +V+F+APWCGPC+  AP  E LA+   GKV   K++    
Sbjct: 5   SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           P    K GI++ P+V  ++    K+SI      S  + T+   + 
Sbjct: 65  PQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIY 109

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score =  152 bits (387), Expect = 1e-48
 Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 78  VQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           + + + ++W+  +        P++V+F A WCGPC+MIAP  E L+ +YAGKV   K++ 
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDV 64

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           D    +A   GI ++PT   +K+G K + ++GA  +  L + + K+ 
Sbjct: 65  DAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score =  150 bits (381), Expect = 2e-47
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 72  REAVNEVQVVTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVAC 129
           R      Q V  S+ ++ +    +  +L+                I EL +E+       
Sbjct: 13  RLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQV 72

Query: 130 FKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
              + + S  I  ++ +R  P  L F +G+ + ++ G  P + L + +   V+
Sbjct: 73  AVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score =  147 bits (373), Expect = 2e-46
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 70  KAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVAC 129
           + R     V  V        ++S +   +  F A WCGPC+ I   +E++A E+   V  
Sbjct: 13  RMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKF 71

Query: 130 FKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
            K++ D++  I +K  +  +PT +  ++G+    +IGA P   L   L   ++
Sbjct: 72  AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPG-MLRQKLRDIIK 123

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score =  146 bits (371), Expect = 2e-46
 Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V     +S  +  I+ +  V+V+F+A WCGPC+MIAP IE+ +++Y  +   +KL+ D+ 
Sbjct: 8   VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDEL 66

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
            ++A K  + ++PT+L FKNG++   ++GA P + +   +   
Sbjct: 67  GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAA-IKQAIAAN 108

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score =  146 bits (371), Expect = 2e-46
 Identities = 15/105 (14%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 75  VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           ++ ++ +T  +         +  +V F    C  C+ +   +++        VA   +++
Sbjct: 1   MSAIRDITTEA-GMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDS 58

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           +  P +  + G   +PT++F ++G+  +   G +    L +    
Sbjct: 59  EARPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYAS 103

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score =  147 bits (372), Expect = 3e-46
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 5/122 (4%)

Query: 63  RNSLILCKAREAVNEVQVVTDSSWENL---VISSENPVLVEFWAPWCGPCRMIAPAIEEL 119
            +   L  A E    +   T  +W         S+  V+V+F A WCGPCR IAP   +L
Sbjct: 4   HHHHHLEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADL 63

Query: 120 AKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           AK+    V   K++TD+  ++A+ + I+++PT +F K G+  + ++GA  K  L ST+ K
Sbjct: 64  AKKL-PNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAK 121

Query: 180 YV 181
           ++
Sbjct: 122 HL 123

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score =  146 bits (370), Expect = 4e-46
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 69  CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVA 128
                +   +  +T+ +    +I   + ++++F+A WCGPC+M+ P + +L + Y   V 
Sbjct: 5   HHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVR 63

Query: 129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
             K + D+SP+IA +  + ++PT +  K+G+    IIGA P + L   +  
Sbjct: 64  FVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTA-LEKGIKD 113

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score =  145 bits (368), Expect = 7e-46
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 78  VQVVTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            QV   +  +  +  +S   V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             +IA +Y I S+PT +F KNG K E   GA  K  L   +   +
Sbjct: 63  CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAK-RLEDVIKANI 106

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score =  146 bits (369), Expect = 2e-45
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 71  AREAVNEVQVVTDSS--WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVA 128
           A  AV  V+ V  +    E L + +++ ++V FWAPW   C  +   + ELAKE   +V+
Sbjct: 7   AEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVS 65

Query: 129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             KL  +  P ++ KY I S+PT LFFKN +K + + GA     L+  + ++ 
Sbjct: 66  FVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE-LTKKVQRHA 117

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score =  142 bits (361), Expect = 4e-45
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF 155
             +  F +P C  C      +EE+A E    V    +N  ++P  A +YGI ++PT++  
Sbjct: 4   VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 156 KNGEKKESIIGAVPKSTLSSTLDKYV 181
            + E     IGA  K  L   + K +
Sbjct: 64  GDVE----FIGAPTKEALVEAIKKRL 85

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score =  143 bits (362), Expect = 7e-45
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
             T  +  N +  +   VLV+F+A WCGPC+ +   +  +A+     V   K++ D + N
Sbjct: 9   NGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGN 67

Query: 140 IATKYGIRSIPTVLFFKNG----EKKESIIGAVPKSTLSSTLDKY 180
            A  YG+ SIP + F K      +  +  +GA   S + + ++K+
Sbjct: 68  AADAYGVSSIPALFFVKKEGNEIKTLDQFVGA-DVSRIKADIEKF 111

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score =  142 bits (360), Expect = 1e-44
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V++VT  +  + +IS    V+V+F+A WCGPC+ IAP  EE +K Y  K+   K++ D+ 
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEV 68

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
             +  K  I S+PT   +KNG   ++++GA   S L   ++KY
Sbjct: 69  SEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score =  142 bits (359), Expect = 2e-44
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 75  VNEVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
           V +V  V   ++  +V ++ + PV+++ +  WCGP + +AP  E+LA+EY   +      
Sbjct: 4   VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDC 63

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
             ++  +A + GIR +PT    K       + GA     L   +   
Sbjct: 64  NQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDK-LLEAIQAA 109

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score =  141 bits (358), Expect = 3e-44
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 75  VNEVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
           V +V  V   ++  +V ++ + PV+++ +  WCGPC+ +AP  E+LA+EY   +   KL+
Sbjct: 17  VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLD 75

Query: 134 TD-DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
            + ++  +A + GIR +PT    K       + GA     L   +   
Sbjct: 76  CNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDK-LLEAIQAA 122

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score =  141 bits (358), Expect = 3e-44
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 71  AREAVNEVQVVTDSSWENL-VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVAC 129
           + E + ++   + +  ENL       P ++ F    C  C  +   +  ++KE  GK   
Sbjct: 2   SLEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNI 61

Query: 130 FKLNTDDSPN--IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
           +    ++  N  +A KY    +PT +F  K G K     G + K+ + + L+ 
Sbjct: 62  YYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score =  141 bits (357), Expect = 6e-44
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 71  AREAVNEVQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV 127
           A E    +       ++  +     +   V+++F A WCGPCR IAP   E AK++ G V
Sbjct: 10  AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV 69

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
              K++ D+   +A KY + ++PT LF K+G + + ++GA  K  L +T+ K+V
Sbjct: 70  -FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHV 121

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score =  139 bits (353), Expect = 2e-43
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 71  AREAVNEVQVVTDSSWENLVISSEN---PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV 127
           A E    +   T   ++  + + ++    V+++F A WCGPCR+IAP   E AK++ G +
Sbjct: 2   AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI 61

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
              K++ D+  ++A  Y + ++PT LF K+GEK +S++G      + + +   +
Sbjct: 62  -FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKD-DIHTKIVALM 113

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score =  139 bits (352), Expect = 2e-43
 Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 79  QVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
            + T +  E L+  ++   ++V+F+A WCGPCR IAP +E LAKE   +V   K++ D +
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQN 61

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
              A KY + ++PT +F K+G++ +   GA  ++ L  T+ ++
Sbjct: 62  EEAAAKYSVTAMPTFVFIKDGKEVDRFSGA-NETKLRETITRH 103

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score =  138 bits (350), Expect = 5e-43
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           +++  D   E+L+   +N  V+V+F+A WCGPC+ IAP  +EL+++Y       K++ D 
Sbjct: 16  IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDK 73

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
               A KY I ++PT +  KNGEK   ++GA     +   + K++
Sbjct: 74  LEETARKYNISAMPTFIAIKNGEKVGDVVGASIA-KVEDMIKKFI 117

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score =  137 bits (346), Expect = 2e-42
 Identities = 31/107 (28%), Positives = 63/107 (58%), Gaps = 5/107 (4%)

Query: 78  VQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           + V +   W   +    +++  V+++F A WCGPCR++AP   +LAK++   V   K++ 
Sbjct: 15  ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDV 73

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           D+   IA ++ + ++PT LF K G+ K+ ++GA+ +  L++ +  + 
Sbjct: 74  DELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKE-ELTAKVGLHA 119

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score =  135 bits (342), Expect = 6e-42
 Identities = 20/109 (18%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 75  VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLN 133
           V E+      ++     + +  +++ F   W  PC+ +    E ++ E +   V+   ++
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
            D++  I+  + I ++P  +    G   + + GA PK    S L+    
Sbjct: 62  ADENSEISELFEISAVPYFIIIHKGTILKELSGADPKE-YVSLLEDCKN 109

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score =  134 bits (339), Expect = 2e-41
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
             V +D  ++  +  + +   +V+F    CGPC  IAPA   ++ +Y  +    +++   
Sbjct: 4   KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQ 62

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
               A    I + PT  FF+N  + +   GA     L   + +++E
Sbjct: 63  CQGTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHLE 107

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score =  133 bits (338), Expect = 3e-41
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 78  VQVVTDSSWE---NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           +   T  +W+        S+  ++V+F A WC PC+MIAP   ELAK++   V   K++ 
Sbjct: 7   IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDV 65

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           D+   +A ++ + ++PT +F K+G+  +  +GA  K  L + + K+  
Sbjct: 66  DELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKHAT 112

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score =  139 bits (351), Expect = 3e-41
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 81  VTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
           + +S+ + ++  S   PVL  FW+     C  + P +E LA +Y G+    KL+ D    
Sbjct: 12  INESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM 71

Query: 140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           IA ++G+R+IPTV  F+NG+  +   G  P+  + + LD  + 
Sbjct: 72  IAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP 114

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score =  134 bits (338), Expect = 5e-41
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 76  NEVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLN 133
             ++   D + +  +   +    +VEF+A W   C+  AP   +L+ +Y      F K++
Sbjct: 7   GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVD 66

Query: 134 TDDSPNIATKYGI------RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
                +++T+Y +      + +PT++ F+ G++         K    S   
Sbjct: 67  VGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTF 117

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score =  132 bits (333), Expect = 1e-40
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
            I  +  VL+      CG C ++   +  + + Y   V   ++   D   IA +Y + + 
Sbjct: 14  YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTG 72

Query: 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           PTVL F NG++       +    L  T+  + E
Sbjct: 73  PTVLLFYNGKEILRESRFISLENLERTIQLFEE 105

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score =  131 bits (332), Expect = 2e-40
 Identities = 32/105 (30%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            Q+ + ++++  + ++ +  V+V+F A WCGP +MI P    L+++Y   V   +++ DD
Sbjct: 14  KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 72

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             ++A++  ++S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 73  CQDVASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 116

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score =  130 bits (330), Expect = 4e-40
 Identities = 33/105 (31%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            Q+ + ++++  + ++ +  V+V+F A WCGPC+MI P    L+++Y+  V   +++ DD
Sbjct: 3   KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDD 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             ++A++  ++S+PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 62  CQDVASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score =  127 bits (322), Expect = 1e-38
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 78  VQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
             + T   W+  +         VL  F A WCGP R IAP   EL++ Y   +    ++ 
Sbjct: 27  HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDV 85

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           D+  + +  + I++ PT  F ++G++ + ++GA     L   +   ++
Sbjct: 86  DELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKP-ELHKKITAILD 132

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score =  124 bits (314), Expect = 2e-37
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           +++    S   +  S++N  ++++F A WC PC  I    +     Y   V    ++ D 
Sbjct: 23  IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDI 80

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP---KSTLSSTLDKY 180
            P +  ++ I+++PT  F+ N   +  ++  V    ++ +     KY
Sbjct: 81  HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKY 127

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score =  124 bits (313), Expect = 2e-37
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 74  AVNEVQVVTDSSWENLVISSEN---PVLVEFWAPWCGPCRMIAPAI--EELAKEYAGK-V 127
           A  +     + S+   +  +E     + V+ +  WCGPC+ ++  +  + L  +Y  +  
Sbjct: 4   AQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHF 63

Query: 128 ACFKLNTD--DSPNIATKYGIRSIPTVLFFK-NGEKKESIIGAVPKSTLSSTLDKYVE 182
              K++ +  +   +  KYG+ + PT+LF   +GE    ++GA     L   +   VE
Sbjct: 64  VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVE 121

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score =  118 bits (297), Expect = 2e-35
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
            +  F +P C  C M    ++E  KE+  K+   K++       A +YG+ ++P +    
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI-- 61

Query: 157 NGEKKESIIGAVPKSTLSSTLDKYVE 182
           NG  +   +GA  +  L   ++  +E
Sbjct: 62  NGVVR--FVGAPSREELFEAINDEME 85

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score =  117 bits (294), Expect = 3e-34
 Identities = 13/96 (13%), Positives = 39/96 (40%)

Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           + +  ++E  +++ F       C  +   + + + + +   A + ++ D +      + I
Sbjct: 16  QAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDI 75

Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
             IP+ +FF NG+  +   G+   +    +     +
Sbjct: 76  SYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQD 111

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  105 bits (264), Expect = 8e-30
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA----GKVACFK 131
            +V  +TD S++  V+ SE+  +VEF+APWCG C+ + P     A E      GKV    
Sbjct: 7   GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66

Query: 132 LNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
           ++   +  +A++YGIR  PT+  F+ GE      G 
Sbjct: 67  VDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGG 102

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  102 bits (257), Expect = 9e-29
 Identities = 27/86 (31%), Positives = 46/86 (53%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           ++V  +T S++   VI S+   LVEF+APWCG C+ + P  ++ A      V    +N D
Sbjct: 17  DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD 76

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKK 161
              ++  +YG++  PT+  F   + K
Sbjct: 77  KHQSLGGQYGVQGFPTIKIFGANKNK 102

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  100 bits (252), Expect = 5e-28
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTD 135
           V+VV   +++ +V+  +  VL+EF+APWCG C+ + P    L K+Y G   +   K++  
Sbjct: 9   VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESI 164
            +     +Y +   PT+ F  +G+KK  I
Sbjct: 69  ANDITNDQYKVEGFPTIYFAPSGDKKNPI 97

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score =  103 bits (257), Expect = 7e-28
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 56  LPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA 115
           LP G     + +     +   E   + D + + +    ++  ++ F  P C  C +    
Sbjct: 98  LPAG-HEFAAFLE-DIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM 155

Query: 116 IEELAKE----YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
             + A E      GK+    +   + P  A +Y + ++P ++   NGE +    GA P+ 
Sbjct: 156 AHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEK 215

Query: 172 TLSSTLDKYV 181
                L   +
Sbjct: 216 MFLEKLLSAL 225

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 97.8 bits (244), Expect = 7e-27
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD 135
            V+V+TD +W  L+   E   ++EF+APWC  C+ + P  E  A+     +V   K++  
Sbjct: 8   NVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT 64

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKE 162
           + P ++ ++ I ++PT+   K+GE + 
Sbjct: 65  EQPGLSGRFIINALPTIYHCKDGEFRR 91

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 98.0 bits (244), Expect = 8e-27
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 77  EVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           E++ ++ + + N V     +  V++  +      C ++   +  LA+++  +    K   
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIV 69

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 166
           +        Y    +PT+  +KNG+ +   IG
Sbjct: 70  NS---CIEHYHDNCLPTIFVYKNGQIEGKFIG 98

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 97.1 bits (242), Expect = 9e-27
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 77  EVQVVTDSSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           E++ ++ + + N V     +  V++  +      C ++   +  LA+++  +    K   
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIV 62

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 166
           +        Y    +PT+  +KNG+ +   IG
Sbjct: 63  NS---CIQHYHDNCLPTIFVYKNGQIEAKFIG 91

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 96.4 bits (239), Expect = 1e-24
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            +  +T  S++  + ++    LVEF+APWCG C+ ++    + AK   G V    +N D 
Sbjct: 18  HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDL 77

Query: 137 SPN--IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176
           + N  +  KY +   PT++ F+  +   S      K + S+ 
Sbjct: 78  NKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAH 119

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 91.6 bits (228), Expect = 1e-24
 Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-----KV 127
           E  + V  +TD +++++V+  E  V V ++ PW           ++L+   +        
Sbjct: 12  ERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTF 71

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
              +++ +  P++  +  +   PT+ ++   +K+E  
Sbjct: 72  VAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPF 108

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 91.2 bits (227), Expect = 1e-24
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLN 133
            V  +T++++++ +  +E    ++F+APWCG C+ +AP  EEL+K+       V   +++
Sbjct: 6   TVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
                NI +KY +R  PT+L F+ G+K  
Sbjct: 64  CTAERNICSKYSVRGYPTLLLFRGGKKVS 92

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 91.4 bits (227), Expect = 3e-23
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF---KL 132
           N V V+ D++++N  ++ ++ VL+EF+APWCG C+  AP  E++A     K       K+
Sbjct: 15  NGVLVLNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
           +   +  +A+++ +   PT+   K G+  +
Sbjct: 74  DATSASVLASRFDVSGYPTIKILKKGQAVD 103

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 80.7 bits (199), Expect = 3e-19
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 70  KAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--- 126
                     V+T  +++  V++  + +LVEF+APWCG C+ +AP  E+ AKE + +   
Sbjct: 124 DWTPPPEVTLVLTKENFDE-VVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPP 182

Query: 127 VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
           +   K++     ++A ++ +   PT+  F+ G   +
Sbjct: 183 IPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 87.7 bits (218), Expect = 4e-23
 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVAC 129
           E  + V V+  S++    +++   +LVEF+APWCG C+ +AP   + A +      ++  
Sbjct: 4   EEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRL 62

Query: 130 FKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
            K++  +  ++A +YG+R  PT+ FF+NG+     
Sbjct: 63  AKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPK 97

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 87.5 bits (217), Expect = 1e-22
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKL 132
           N V V+ D +++N  ++ ++ VL+EF+APWCG C+  AP  E++A         +A  K+
Sbjct: 17  NGVWVLNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
           +   +  +A+K+ +   PT+   K G+  +
Sbjct: 76  DATSASMLASKFDVSGYPTIKILKKGQAVD 105

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 87.0 bits (215), Expect = 1e-22
 Identities = 12/107 (11%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
             +V +++ ++ +  S   V++ F            +A  + EL   + G++   ++  +
Sbjct: 17  PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE 76

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
               +  ++G+   P++   +       I      S+  + +   + 
Sbjct: 77  AERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 89.0 bits (220), Expect = 3e-22
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 76  NEVQVVTDSSWENLVISSENP---VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
             V  +         I  E     ++V  +      C  +  ++  LA EY   V   K+
Sbjct: 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKI 170

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 167
              ++     ++    +PT+L +K GE   + I  
Sbjct: 171 KASNTG-AGDRFSSDVLPTLLVYKGGELLSNFISV 204

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 84.7 bits (210), Expect = 6e-22
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V VV   ++  +V+     VL+EF+APWCG C+ +AP  EEL   YA           D 
Sbjct: 9   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS------EFKDR 62

Query: 138 PNIA--------TKYGIRSIPTVLFFKNGEKKESI 164
             IA            I+  PT+  +  G K + +
Sbjct: 63  VVIAKVDATANDVPDEIQGFPTIKLYPAGAKGQPV 97

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 85.2 bits (211), Expect = 7e-22
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 71  AREAVNEVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAK--EYAGKV 127
            +  +N  Q+ T       ++ ++  PV+++ +A WC  C+          +  +     
Sbjct: 7   TQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADT 66

Query: 128 ACFKL----NTDDSPNIATKYGIRSIPTVLFF-KNGEKKES--IIGAVPKSTLSSTLDK 179
              +     N      +     +  +PT+LFF   G++     + G +   T S+ L  
Sbjct: 67  VLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 89.1 bits (220), Expect = 2e-21
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 76  NEVQVVTDSSWENLV--ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
           ++V  +TD ++E+ +    S   +LVEF+APWCG  + +AP  E  A    G V   K++
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
              + N   KYG+   PT+  F++GE+  +  G      + S L K   
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 109

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 78.0 bits (191), Expect = 2e-17
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDD 136
           +VV   +++ +V +    VL+EF+APWCG C+ + P  +EL ++ +    +   K++   
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA 414

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESI 164
           + ++ + Y +R  PT+ F    +K    
Sbjct: 415 N-DVPSPYEVRGFPTIYFSPANKKLNPK 441

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 89.4 bits (221), Expect = 3e-21
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
               +T  ++   V+  +   +V+F+APW GP +  AP  E LA+   GKV   K++   
Sbjct: 658 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA 717

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESI 164
            P    K GI++ P+V  ++    K+SI
Sbjct: 718 YPQTCQKAGIKAYPSVKLYQYERAKKSI 745

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 86.7 bits (214), Expect = 2e-20
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 59  GSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEE 118
           G +    ++        + V  +     +N   S + P LV+F+APW  P R + P + +
Sbjct: 423 GKKILYDILAFAKESVNSHVTTLGP---QNFPASDKEPWLVDFFAPWSPPSRALLPELRK 479

Query: 119 LAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
            +    G++    L+      +   Y I++ PT + F      E
Sbjct: 480 ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE 523

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 82.5 bits (203), Expect = 6e-19
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 59  GSRSRNSLILCKAREAVNEVQVVTDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAI 116
           G  S   ++          V  +T S++  LV     +   +V+F++PW  P +++ P  
Sbjct: 526 GHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEW 585

Query: 117 EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
           + +A+   G +    ++     +  T+  ++  P + F+     K 
Sbjct: 586 KRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKA 631

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 77.9 bits (191), Expect = 3e-17
 Identities = 22/93 (23%), Positives = 39/93 (41%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
            ++S     V F++P       +AP   E AKE  G +    +N  D   +    G+ S 
Sbjct: 129 AVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSY 188

Query: 150 PTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           P++  F++G       G   K +L +   ++V 
Sbjct: 189 PSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 221

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 63.2 bits (153), Expect = 3e-12
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 3/126 (2%)

Query: 59  GSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEE 118
           G RS+ SL+    +   + V  ++  ++ N + ++     V +   +C        +   
Sbjct: 205 GDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAF-AAGVGWLITFCSKGEDCLTSQTR 263

Query: 119 LAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST 176
           L       G V    ++ D   ++       +  T  F       +    +V        
Sbjct: 264 LRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDA 323

Query: 177 LDKYVE 182
            + Y+E
Sbjct: 324 KEIYME 329

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 87.4 bits (216), Expect = 5e-21
 Identities = 25/92 (27%), Positives = 42/92 (45%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
                V+V+   ++E++    +  V VEF+APWCG C+ +AP  ++L + Y         
Sbjct: 246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 305

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
             D + N      + S PT+ FF     +  I
Sbjct: 306 KMDSTANEVEAVKVHSFPTLKFFPASADRTVI 337

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 75  VNEVQVVTDSSWEN---LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFK 131
            N++ +V + + +    +        ++ F               +  A+ + GK+    
Sbjct: 113 HNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIF 172

Query: 132 LNTD--DSPNIATKYGIR--SIPTVLFFKNGEKKE 162
           +++D  D+  I   +G++    P V      E+  
Sbjct: 173 IDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMT 207

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 87.2 bits (215), Expect = 1e-20
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFK 131
              + V  +   S+    I S + VL EF+APWCG C+ +AP   + A+    K +   +
Sbjct: 11  PEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQ 69

Query: 132 LNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
           ++  ++ ++  ++ I   P++  FKN +   SI
Sbjct: 70  IDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSI 102

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 84.9 bits (209), Expect = 8e-20
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL-NT 134
           + V  +   + + +V   +  VLV ++APWCG C+ +AP  +ELA  YA   +   +   
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESI 164
           D + N      I   PT++ +  G+K ES+
Sbjct: 418 DHTENDVRGVVIEGYPTIVLYPGGKKSESV 447

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 82.3 bits (203), Expect = 4e-19
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA------GKVACF 130
           E+  +   + +  ++++ +  LV F+A WC   +M+ P  EE +           +V   
Sbjct: 6   EITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64

Query: 131 KLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160
           +++ D   +IA +Y I   PT+  F+NG  
Sbjct: 65  RVDCDQHSDIAQRYRISKYPTLKLFRNGMM 94

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 82.7 bits (203), Expect = 5e-19
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNT 134
           + ++   S    V+ S +   VEF+A WCG     AP  +ELA +       +    L+ 
Sbjct: 14  LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDC 73

Query: 135 DDSPN--IATKYGIRSIPTVLFFKNGEKKES 163
            +  N  +  ++ I   PTV FF+   K  S
Sbjct: 74  AEETNSAVCREFNIAGFPTVRFFQAFTKNGS 104

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 78.5 bits (193), Expect = 2e-18
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 74  AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-------K 126
                  +   ++  ++  S+  VLV+F   +    +      + LA+  A        +
Sbjct: 3   HTKGALPLDTVTFYKVIPKSKF-VLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAE 59

Query: 127 VACFKLNTDDSPNIATKYGI--RSIPTVLFFKNGEKKESI 164
           V         +  ++ KY +   S P    F++G+ +  +
Sbjct: 60  VGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPV 99

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-----KVACFKL 132
           + ++   +    V+ S +   VEF+A WCG C   AP    LA++         +A   L
Sbjct: 14  LTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA--AL 71

Query: 133 NTDDSPN--IATKYGIRSIPTVLFFKNGEKK 161
           +  +  N  +   + I   PTV FF      
Sbjct: 72  DCAEETNSAVCRDFNIPGFPTVRFFXAFTXN 102

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN 139
              +        ++E  + + F        R +A  + +       +V       +   N
Sbjct: 143 AXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKGVAVRRVL------NTEAN 196

Query: 140 IATKYGIRSIPT-VLFFKNGEKKESIIGAVPKSTLSSTLDK 179
           +  K+G+   P+  L F+NG      +    +S  ++ L +
Sbjct: 197 VVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQR 237

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 76.6 bits (188), Expect = 8e-18
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 77  EVQVVTDSSWENLVISSENP---VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN 133
            V  +         I  E     ++V  +      C  +  ++E LA EY   V   K+ 
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIR 158

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 166
             ++     ++    +PT+L +K GE   + I 
Sbjct: 159 ASNTG-AGDRFSSDVLPTLLVYKGGELISNFIS 190

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 73.5 bits (180), Expect = 2e-17
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 9/110 (8%)

Query: 72  REAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFK 131
            + + +++V T    +  +   E           C  CR  A  +  +  E    +  + 
Sbjct: 8   LDNIKDLEVTTVVRAQEALDKKETATFF-IGRKTCPYCRKFAGTLSGVVAETKAHI--YF 64

Query: 132 LNTDDSPN------IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS 175
           +N+++           ++YGI ++P  +   +G+       ++    +  
Sbjct: 65  INSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKD 114

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 77.4 bits (190), Expect = 3e-17
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR------MIAPAIEELAKEYAGK 126
           + V+ V  V   +++N V      + + +  P            M    +E  A+    K
Sbjct: 10  DGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK 68

Query: 127 VACF-KLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
              F  ++++    +A K G+    ++  FK  E  E
Sbjct: 69  GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE 105

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 77.4 bits (189), Expect = 3e-17
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 77  EVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--------V 127
            V  ++   +  +   +   P +V F+   CG CR  A    + A     +         
Sbjct: 24  SVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIA 83

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKES 163
               +N     ++  KY I  +P + FF   +   S
Sbjct: 84  TAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRS 119

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 76.3 bits (187), Expect = 5e-17
 Identities = 9/98 (9%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-------- 124
           +  + V  +T+ +++ ++   +  VL  ++       ++     +               
Sbjct: 8   DGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEH 65

Query: 125 GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE 162
             +    ++      +A K G     ++   K     E
Sbjct: 66  KDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIE 103

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 72.3 bits (178), Expect = 6e-17
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 26/109 (23%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----------------- 138
           P ++ FW PWC  C   AP++ ++A           + T                     
Sbjct: 26  PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVG-IATRADVGAMQSFVSKYNLNFTNL 84

Query: 139 -----NIATKYGIRSIPTVLFF-KNGE--KKESIIGAVPKSTLSSTLDK 179
                 I  +Y +   P  +F+  +G      +   A+ +  LS  +  
Sbjct: 85  NDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 71.9 bits (177), Expect = 8e-17
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----------------- 138
           P ++ FWAPWC  C+  AP + ++A  +        +   D                   
Sbjct: 27  PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVG-VAGLDQVPAMQEFVNKYPVKTFTQ 85

Query: 139 ------NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                 ++   +G+   P   F   +G   + + G + +  L+  +  
Sbjct: 86  LADTDGSVWANFGVTQQPAYAFVDPHG-NVDVVRGRMSQDELTRRVTA 132

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 24/108 (22%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN--------------- 139
            V + FW  WC PC+   P +    K +  + V    +N  +S                 
Sbjct: 28  GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPV 87

Query: 140 -------IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                  +   Y +  +PT       G+  + + G + +S +   ++ 
Sbjct: 88  VLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNL 135

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 69.6 bits (171), Expect = 9e-16
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 28/112 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---------------- 139
           P L+ FW+  C  C+   P + E   +Y  ++    ++   S +                
Sbjct: 31  PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI 90

Query: 140 -----------IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                      +   +    +P    F K G+ +    G      L   +++
Sbjct: 91  TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 30/116 (25%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK------VACFKLNTDDSP---------- 138
            P L++FWA WC  C       E+ A++          VA      +             
Sbjct: 39  KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGL 98

Query: 139 -------------NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY 180
                         IA    I   P+     K+G+ +  + G++ ++   + +   
Sbjct: 99  NYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 29/116 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP---------------- 138
             +V F+A WC PCR   P + ++ K +A +      +  ++                  
Sbjct: 36  AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPV 95

Query: 139 -----------NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182
                      N     GI  IPT      +G     I+G   K+     +   + 
Sbjct: 96  MMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG 151

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 27/110 (24%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP---------------- 138
             ++ FW  WC PC+   P  +     +    V    +N  +S                 
Sbjct: 36  KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLT 95

Query: 139 ---------NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLD 178
                     +  +Y I +IPT     + GE +++ IG +    L    +
Sbjct: 96  FPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 29/113 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV---------------------------- 127
            V ++FWA WC  C    P  +E+AKE                                 
Sbjct: 24  KVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDY 83

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
               +  D S  +   YG+RS PT  F  K G+  ++  G + K  +  TL +
Sbjct: 84  KNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 25/109 (22%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--------------------VACFKLN-- 133
             L+ FW P C  C    P I + A +Y  K                    V  + L   
Sbjct: 30  VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFT 89

Query: 134 --TDDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
              D    +   +G +  PT +   K GE  ++ +G      L   +D 
Sbjct: 90  VMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDT 138

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP--------------- 138
             VLV FWA WC  CR   P+++ L K +    +    +N +                  
Sbjct: 42  KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLS 101

Query: 139 ----NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKST 172
                +  +YG   +P      + G  ++ + G +    
Sbjct: 102 DATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDA 140

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 26/111 (23%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN--------------- 139
            V ++FWA WCGPCR   P + ++  +Y  K      +N D                   
Sbjct: 30  VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTV 89

Query: 140 -------IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182
                      YG++ +PT     +NG+     +G  P       L++ + 
Sbjct: 90  AFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPAD--KEALEQQIL 138

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 25/103 (24%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP--------------- 138
             V+V FWA WC PCR   P++  L    AGK      ++ D+                 
Sbjct: 29  QVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTL 88

Query: 139 --------NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKST 172
                    +   YG   +P      ++G   + ++GA+    
Sbjct: 89  PVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDH 131

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 26/113 (23%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---------------- 139
           P ++ FWA WC  C+   P +  +A+E             D+                  
Sbjct: 32  PAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLL 91

Query: 140 ---------IATKYGIRSIP-TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
                    +A ++ +   P T +  + G+      G   +  L   L     
Sbjct: 92  ASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA 144

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 25/110 (22%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN---------------- 139
           + ++ WA WCGPCR   PA++EL ++YAGK +    L+ D +                  
Sbjct: 33  IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL 92

Query: 140 -------IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV 181
                      Y I  IP  +   ++G+   + +        +   ++ +
Sbjct: 93  HMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 68.1 bits (166), Expect = 4e-14
 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 29/116 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK------VACFKLNTDDSPN---------- 139
            VL++FWA  C  C+   P +    + Y         V   +   +  P           
Sbjct: 84  VVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLG 143

Query: 140 ------------IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182
                         T Y  R  P        G  +    G    +   + + + + 
Sbjct: 144 ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN 199

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 64.3 bits (157), Expect = 6e-14
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 96  PVLVEFWAPWCGPCRMIA------PAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
            V+V F +  C  C+ +       P +  L +      +   ++T +   +A +Y +   
Sbjct: 21  MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVAS-VSVDTPEGQELARRYRVPGT 79

Query: 150 PTVLFF-KNGEKKES---IIGAVPKSTLSSTLDKYVE 182
           PT +F        E    + G+ P++     L +   
Sbjct: 80  PTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCV 116

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 28/112 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNI-------------- 140
             +V  WA WCGPCR   PA+ +  K      V    +  D S NI              
Sbjct: 26  VRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85

Query: 141 ----------ATKYG--IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                        YG  +  +P  +        +++I G V + +L+  +  
Sbjct: 86  RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKL 137

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGI-RSIPTV 152
           P++V     WCG C+ + P   E  +            L  ++ P           IP +
Sbjct: 48  PLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRI 107

Query: 153 LFF-KNGEKKESIIGAVPK 170
           LF   +G+    II     
Sbjct: 108 LFLDPSGKVHPEIINENGN 126

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Length = 140

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 3/120 (2%)

Query: 64  NSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY 123
           ++L           V       W  L  + +  VL+                I EL  E+
Sbjct: 8   DALWQRMLARGWTPVSESRLDDW--LTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEF 65

Query: 124 AGK-VACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
                     + + S  I  ++G    P  L F  G  +  + G  P + L + +   VE
Sbjct: 66  PDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 32/115 (27%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN--------------- 139
            VLV+FW   C  CR   P + +    +  K    + ++TD                   
Sbjct: 31  YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQ 90

Query: 140 ----------IATKYGIRSIPTVLFF-KNGEKKESIIGA-VPKSTLSSTLDKYVE 182
                     +   Y I   P ++     G+    I+   +    L +T++K+V 
Sbjct: 91  VLLQKDDVKDVLESYCIVGFPHIILVDPEGK----IVAKELRGDDLYNTVEKFVN 141

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 32/116 (27%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP--------------- 138
              ++ FW   CG C+   P + +   +   K +  +  N +                  
Sbjct: 32  KYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGW 91

Query: 139 ----------NIATKYGIRSIPTVLFF-KNGEKKESIIGA-VPKSTLSSTLDKYVE 182
                     +    Y I + P +    KN      II   +    L   L +Y +
Sbjct: 92  LNVRDSKNHTDFKITYDIYATPVLYVLDKNKV----IIAKRIGYENLDDFLVQYEK 143

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 18/122 (14%), Positives = 30/122 (24%), Gaps = 34/122 (27%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN--------TDDSPNIATK--- 143
             V++  W  WC PCR  +  ++ + +E                    D S +IA     
Sbjct: 60  QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVT 119

Query: 144 ----------------------YGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY 180
                                      IPT +   K        +  V    +       
Sbjct: 120 DNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL 179

Query: 181 VE 182
           V+
Sbjct: 180 VD 181

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 28/92 (30%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN-------------- 139
              L+ FWA +    R     +     ++    +A   ++ D+  +              
Sbjct: 33  RYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLS 92

Query: 140 ------------IATKYGIRSIPTVLFF-KNG 158
                       +  KY +R           G
Sbjct: 93  TQFHEGLGKESELYKKYDLRKGFKNFLINDEG 124

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 79  QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP 138
             +++ + E L +      +  F    CG C   A    + A      +    ++  ++ 
Sbjct: 121 PQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQ 179

Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           ++A ++ +  +P ++   N    E  +GA P++     +    E
Sbjct: 180 DLAEQFQVVGVPKIVI--NKGVAE-FVGAQPENAFLGYIMAVYE 220

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 60.5 bits (146), Expect = 9e-12
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 94  ENPVLVEFW--APWCGPCRMIAPAIEELAKEYAG-----KVACFKLNTDDSPNIATKYGI 146
           + PV ++ +  A  C  C+     ++E  +         K+     +         KYG+
Sbjct: 20  KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGV 79

Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSS 175
             +PT++   + +     IG       ++
Sbjct: 80  DRVPTIVIEGDKDYGIRYIGLPAGLEFTT 108

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 33/117 (28%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPN------------- 139
             +L+ FWA WC P       ++ L KEY      A   ++ D                 
Sbjct: 34  RYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSW 93

Query: 140 ------------IATKYGIRSIPTVLFF-KNGEKKESIIGA-VPKSTLSSTLDKYVE 182
                        A +Y I ++PT +     G+    I+   +    L+  L + ++
Sbjct: 94  DQVCDFTGLSSETAKQYAILTLPTNILLSPTGK----ILARDIQGEALTGKLKELLK 146

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 61.0 bits (148), Expect = 4e-12
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSI 149
            ++S     V F++P C  C  +AP   E AKE  G +    +N  D   +    G+ S 
Sbjct: 110 AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSY 169

Query: 150 PTVLFFKNG 158
           P++  F++G
Sbjct: 170 PSLFIFRSG 178

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 30/112 (26%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN---------------- 139
           VL++F             A+ EL  +YA +    ++++ D   +                
Sbjct: 38  VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRD 97

Query: 140 -------IATKYGIRSIPTVLFF-KNGEKKESIIG-AVPKSTLSSTLDKYVE 182
                    + Y + ++P+V    +N E    +         L   + K +E
Sbjct: 98  ANGAYSSYISLYNVTNLPSVFLVNRNNE----LSARGENIKDLDEAIKKLLE 145

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 59.4 bits (144), Expect = 7e-12
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 29/92 (31%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFK---LNTDDSPN-------------- 139
           +   F A WC PCR   P + ++  E     A F+   +++D S +              
Sbjct: 29  IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88

Query: 140 -----------IATKYGIRSIPTVLFF-KNGE 159
                      +  KYGI  IP ++   K+G 
Sbjct: 89  AIPYRSGPASNVTAKYGITGIPALVIVKKDGT 120

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 40/104 (38%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV---------------------------- 127
            V++ F A WC  C  +A  ++ L ++Y                                
Sbjct: 39  VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTP 98

Query: 128 -----------ACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGE 159
                          +   D  ++  K+ +RSI  ++   K+  
Sbjct: 99  EMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSN 142

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 57.0 bits (137), Expect = 3e-11
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 18/101 (17%)

Query: 78  VQVVTDSSWENLVISSEN----PVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGK 126
            + V+ S +E    + E      +   F          WC  C    P + E  K  +  
Sbjct: 4   YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG 63

Query: 127 VACFKLNTDDSP-------NIATKYGIRSIPTVLFFKNGEK 160
                    + P       +      + ++PT+L +   +K
Sbjct: 64  CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 104

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 28/91 (30%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFK---LNTDDSP-------------- 138
            V+++F A WCG CR   P IE+         A F    ++ D+                
Sbjct: 35  VVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTY 94

Query: 139 --------NIATKYGIRS--IPTVLFF-KNG 158
                   +I  KY +R   I   +   + G
Sbjct: 95  PLGLDPGADIFAKYALRDAGITRNVLIDREG 125

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 35/119 (29%)

Query: 95  NPVLVEFWAPWCGPC--RMIAPAIEELAKEYAGK--VACFKLNTDDSPN----------- 139
             +L+ FWA W      +     + E+ K+Y     +    ++ D               
Sbjct: 34  KSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTL 93

Query: 140 --------------IATKYGIRSIPTVLFF-KNGEKKESIIGA-VPKSTLSSTLDKYVE 182
                         +A +Y I  IP  +    +G+    I+   +    L   ++  VE
Sbjct: 94  DWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGK----ILAKNLRGEELKKKIENIVE 148

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 56.8 bits (137), Expect = 5e-11
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIE--ELAKEYAGKVACFKLNT---DDSPNIATKYGIRS-- 148
           P L+ F A WC  CR +  ++   +     A      K++    D +  ++  YG     
Sbjct: 31  PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQD 90

Query: 149 -IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182
            IP V+    +G+ + +  G    +    +     +
Sbjct: 91  GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYD 126

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 57.1 bits (137), Expect = 6e-11
 Identities = 12/98 (12%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 84  SSWE--NLVISSENPVLV-EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI 140
           S W     +++ +  ++   F   +   C  +   + ++A +       + ++  + P+ 
Sbjct: 28  SGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF 87

Query: 141 ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 178
            T Y +    +V+FF   +     +G    + ++  ++
Sbjct: 88  NTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMN 125

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 57.2 bits (138), Expect = 7e-11
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 26/85 (30%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPN--------------- 139
           V   F A WC PCR   P + E  +++           + D+  +               
Sbjct: 51  VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIP 110

Query: 140 ---------IATKYGIRSIPTVLFF 155
                    +  KY + SIPT++  
Sbjct: 111 FANRNIVEALTKKYSVESIPTLIGL 135

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 26/85 (30%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPN--------------- 139
           V   F A WC P R   P + +  K +A K       ++ D+S                 
Sbjct: 31  VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP 90

Query: 140 ---------IATKYGIRSIPTVLFF 155
                    + T + ++SIPT++  
Sbjct: 91  FEDRKGMEFLTTGFDVKSIPTLVGV 115

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 36/123 (29%)

Query: 96  PVLVEFWAPWCGPCRM-IAPAIEELAKEYAGK---------------------VACF--- 130
            +++E +   C  C M   P  +++   +                        +  F   
Sbjct: 30  VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHE 89

Query: 131 ----------KLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                     +      P     Y +R  P++L   K G+ +    G V +  L + +  
Sbjct: 90  YRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIAT 149

Query: 180 YVE 182
            + 
Sbjct: 150 LLG 152

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 29/93 (31%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEE---LAKEYAGK-------------------VACFKL 132
              L+    P C  C  +   ++    +    A K                      F  
Sbjct: 32  EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAK 91

Query: 133 ------NTDDSPNIATKYGIRSIPTVLFF-KNG 158
                 + +        Y +R+IPT+    KN 
Sbjct: 92  EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNK 124

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 26/85 (30%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPN--------------- 139
           V + F A WC PCR   P + E  +++          ++ D++ +               
Sbjct: 31  VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALP 90

Query: 140 ---------IATKYGIRSIPTVLFF 155
                    +   +G+ SIPT++  
Sbjct: 91  FDQRSTVSELGKTFGVESIPTLITI 115

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 29/91 (31%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEE---LAKEYAGK-VACFKLNTDDSP-------------- 138
            ++ F+ P C  CR       E     +      +    +  D++               
Sbjct: 30  TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGW 89

Query: 139 ----------NIATKYGIRSIPTVLFF-KNG 158
                          Y IR+ PT+       
Sbjct: 90  IVGWNKAGDIRTRQLYDIRATPTIYLLDGRK 120

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 26/86 (30%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPN-------------- 139
            V   F A WC P R   P + E   ++             D+  +              
Sbjct: 30  LVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAV 89

Query: 140 ----------IATKYGIRSIPTVLFF 155
                     ++  + + SIPT++  
Sbjct: 90  PFAQSEAVQKLSKHFNVESIPTLIGV 115

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           E   +  +  E L        L+     WC  C++   A++         +    ++   
Sbjct: 37  ESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQ-RLQPNIELAIISKGR 95

Query: 137 SPNIATKY---GIRSIPTVLFFKNGEKKESIIGAVPKSTL 173
           + +   +       +IP VL               P++ L
Sbjct: 96  AEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQAVL 135

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 37/124 (29%)

Query: 96  PVLVEFWAPWCGPCRM-IAPAIEELAKEYAGK---------------------VACF--- 130
            V+VE +   C  C     P  +++ +                          +  F   
Sbjct: 32  VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE 91

Query: 131 -----------KLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLD 178
                             P+   KY +   P+++   + G  ++   G V    L   L 
Sbjct: 92  FGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLG 151

Query: 179 KYVE 182
             + 
Sbjct: 152 SLLS 155

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 54.4 bits (131), Expect = 9e-10
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 30/105 (28%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-------------------------VAC 129
             +LV  WA WC PCR   PA++EL  + +G                          +  
Sbjct: 61  KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR 120

Query: 130 FKLNTDDSPNIATK----YGIRSIP-TVLFFKNGEKKESIIGAVP 169
                D    +            +P +VL    G +  +I G   
Sbjct: 121 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAE 165

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 56  LPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA 115
           +P G     +L+    R + +E   + D++ E L        +     P C  C      
Sbjct: 102 IPAG-EEIRALVEVIMRLSEDE-SGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLL 159

Query: 116 IEELAKEYAG----KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS 171
               A E        +    +   ++P+IA KYG+ S+P++    NG      +G   + 
Sbjct: 160 AHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI--AINGYLV--FVGVPYEE 215

Query: 172 TLSSTLDKYVE 182
                +    E
Sbjct: 216 DFLDYVKSAAE 226

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 50.8 bits (121), Expect = 6e-09
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 92  SSENPVLVEFWAPWCGPCRM----IAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR 147
                 L+ F  P C  C      IAP      +  A  V   ++     P +     + 
Sbjct: 16  DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVT 75

Query: 148 SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
             PT +      +   + G   +      L + + 
Sbjct: 76  FTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIG 110

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 52.8 bits (126), Expect = 7e-09
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 13/99 (13%)

Query: 74  AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--------G 125
                  + + S+E  V       +V+F      P      A    +K            
Sbjct: 14  TCTGCVDLDELSFEKTVERFPY-SVVKFDIAS--PYGEKHEAFTAFSKSAHKATKDLLIA 70

Query: 126 KVACFKLNTDDSPNIATKYGI--RSIPTVLFFKNGEKKE 162
            V        ++  +  +Y +  ++ P++  FK    + 
Sbjct: 71  TVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEY 109

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV 152
           P++V      C   + +       EE+ +    K     L  + +    +  G + +P +
Sbjct: 46  PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDG-QYVPRI 104

Query: 153 LFF-KNGEKKESIIGAVPK 170
           +F   +   +  I G    
Sbjct: 105 MFVDPSLTVRADIAGRYSN 123

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 156

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY 144
              LV  WA WC PC   AP + EL K+   +     +N  D+ + A ++
Sbjct: 43  KVSLVNVWASWCVPCHDEAPLLTELGKDK--RFQLVGINYKDAADNARRF 90

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Length = 176

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 95  NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY 144
            P LV  W  WC  CR+  P +  LA++    V  + +N  D    A K+
Sbjct: 59  KPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKW 105

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIP 150
            +++         C+ +   +   E +          +++  D          Y +   P
Sbjct: 44  WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103

Query: 151 TVLFF--KNGEKKESIIGAVPK---STLSSTLDKY 180
            V     + G+K               ++  L ++
Sbjct: 104 YVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEH 138

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Length = 168

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 90  VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY 144
           V++   PVL+  WA WC  CR     + +L+ +    +    +N  D    A  +
Sbjct: 47  VLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISW 98

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 17/92 (18%)

Query: 96  PVLVEFW-APWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPN-----------I 140
           P+ + F  + WC  C  +   I    E        +   +++     +           +
Sbjct: 49  PIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQEL 108

Query: 141 ATKYGIRSIPTVLFFKNGEKKE-SIIGAVPKS 171
             +Y +   P ++F  + E K+ + +G  P  
Sbjct: 109 KAQYKVTGFPELVFI-DAEGKQLARMGFEPGG 139

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 106 CGPCRMIAPAIEELAKEY-----AGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK 160
           C  C         +A              F ++ ++ P +     ++++P ++ +   E 
Sbjct: 56  CQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAES 115

Query: 161 KES 163
            + 
Sbjct: 116 NKQ 118

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
               ++GI   P ++     ++     G  P   L   LD +++
Sbjct: 167 QRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	100.0
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.97
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.97
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.96
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.96
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.95
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.95
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.94
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.94
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.94
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.93
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.93
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.93
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.93
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.93
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.93
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.93
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.93
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.93
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.93
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.93
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.93
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.93
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.92
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.92
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.92
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.92
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.92
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.92
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.92
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.92
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.92
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.92
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.92
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.92
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.92
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.92
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.92
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.91
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.91
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.91
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.91
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.91
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.91
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.91
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.91
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.91
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.91
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.91
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.91
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.91
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.91
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.91
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.91
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.91
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.9
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.9
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.9
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.9
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.9
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.9
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.9
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.9
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.89
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.89
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.89
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.89
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.89
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.89
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.89
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.89
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.88
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.88
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.88
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.88
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.88
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.88
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.79
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.87
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.86
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.86
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.85
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.85
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.85
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.85
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.85
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.85
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.85
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.84
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.84
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.84
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.83
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.83
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.83
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.83
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.83
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.82
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.82
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.82
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.82
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.81
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.81
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.69
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.8
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.8
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.79
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.79
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.79
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.79
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.78
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.78
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.77
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.77
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.77
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.77
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.77
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.76
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.76
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.76
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.76
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.76
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.75
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.75
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.75
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.75
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.74
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.74
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.74
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.74
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.74
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.73
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.73
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.73
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.72
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.72
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.72
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.72
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.72
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.72
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.72
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.71
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.71
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.7
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.7
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.7
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.67
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.67
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.67
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.67
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.67
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.65
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.65
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.65
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.64
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.63
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.63
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.62
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.61
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.61
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.61
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.61
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.6
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.6
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.6
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.6
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.59
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.59
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.58
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.57
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.57
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.57
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.57
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.57
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.34
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.56
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.55
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.55
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.32
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.54
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.53
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.52
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.52
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.51
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.51
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.5
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.49
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.48
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.47
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.46
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.45
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.43
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.41
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.41
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.41
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.39
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.39
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.38
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.38
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.37
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.37
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.33
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.31
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.31
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.29
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.28
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.28
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.27
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.26
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	99.26
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.23
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.21
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.2
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.18
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.17
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.15
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.15
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.14
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.14
3me7_A	170	Putative uncharacterized protein; electron transfe	99.12
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.12
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.12
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.12
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.09
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.08
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.07
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.07
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	99.05
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.05
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.05
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.04
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.03
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.03
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.02
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.02
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.02
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.98
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.97
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.96
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.96
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.95
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.94
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.94
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.94
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.94
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.92
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.89
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.87
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.87
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.85
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.82
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.81
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.79
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.76
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.76
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.76
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.74
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.74
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.73
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.73
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.73
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.73
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.7
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.65
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.65
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.65
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.62
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.61
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.57
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.5
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.46
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.45
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.36
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.33
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.32
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.32
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.3
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	98.3
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.28
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.24
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.19
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.08
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	98.05
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.04
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.0
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.98
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.97
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	97.97
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.94
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	97.9
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	97.79
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.78
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.76
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.67
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.64
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.62
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.59
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.55
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.53
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.51
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.5
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.48
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	97.31
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	97.26
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.22
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	97.0
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	96.97
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	96.74
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.48
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	96.36
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	95.97
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	95.6
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	95.54
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.04
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	94.84
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	94.19
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	93.99
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	92.18
3kgk_A	110	Arsenical resistance operon trans-acting represso;	91.76
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	91.47
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	91.28
3ktb_A	106	Arsenical resistance operon trans-acting represso;	91.12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.43
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	90.42
3l78_A	120	Regulatory protein SPX; transcription, transcripti	87.75
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	85.91
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	85.58
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	84.49
3fz4_A	120	Putative arsenate reductase; APC61768, structural	83.47

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=100.00  E-value=3.4e-32  Score=203.75  Aligned_cols=139  Identities=28%  Similarity=0.499  Sum_probs=130.3

Q ss_pred             eeeccCCCCcccccCcccccCCCCCCCCCcccchhhhhhhhhhccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhh
Q 030165           31 KIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR  110 (182)
Q Consensus        31 ~~~~p~~~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~  110 (182)
                      .++||||.+.||.|..+.     ...+.|++       |..+...+.+.++++++|++.+ .+++++||+||++||++|+
T Consensus        14 ~~~c~~c~~~~~~~~~r~-----~~~~~~~~-------~~~~~~~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~   80 (155)
T 2ppt_A           14 RLTCLACGQANKVPSDRL-----AAGPKCGI-------CGAGLITGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCR   80 (155)
T ss_dssp             EEECTTTCCEEEEEGGGT-----TSCCBCTT-------TCCBSCCSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHH
T ss_pred             eEECccccccccCCcccc-----cCCCCCCc-------CCccccCCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHH
Confidence            589999999999999987     66778888       7778888899999999999966 7889999999999999999


Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .+.|.|+++++++.+++.|+++|++++++++++|+|+++||+++|++|+++.++.|..+.++|.+||+++++
T Consensus        81 ~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A           81 QMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence            999999999999998899999999999999999999999999999999999999999999999999999874

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.97  E-value=2.4e-30  Score=191.05  Aligned_cols=138  Identities=34%  Similarity=0.612  Sum_probs=129.1

Q ss_pred             eeeccCCCCcccccCcccccCCCCCCCCCcccchhhhhhhhhhccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhh
Q 030165           31 KIHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCR  110 (182)
Q Consensus        31 ~~~~p~~~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~  110 (182)
                      .+.||+|...||+|....     ...|.|+.       |..+...+.+..+++++|++.+ ..+++++|+||++||++|+
T Consensus         5 ~~~c~~c~~~n~~p~~~~-----~~~~~~~~-------~~~~~~~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~   71 (148)
T 3p2a_A            5 NTVCTACMATNRLPEERI-----DDGAKCGR-------CGHSLFDGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCR   71 (148)
T ss_dssp             EEECTTTCCEEEEESSCS-----CSCCBCTT-------TCCBTTCCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHH
T ss_pred             EEECcccccccCCCCccc-----ccCCcchh-------cCCccccCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHH
Confidence            578999999999988876     66777777       7888888999999999999955 8899999999999999999


Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          111 MIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       111 ~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.|.|+++++++.+++.|+.+|++++++++++|+|+++||+++|++|+.+.++.|..+.++|.+||++++
T Consensus        72 ~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  142 (148)
T 3p2a_A           72 SFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL  142 (148)
T ss_dssp             HHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999998889999999999999999999999999999999999999999999999999999886

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.97  E-value=4.7e-30  Score=188.55  Aligned_cols=106  Identities=12%  Similarity=0.246  Sum_probs=99.6

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCC--hhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWC--GPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC--~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .....+|+++|++.+..+++++||+|||+||  ++|+++.|++++++++|.++++|++||+|++++++.+|||+++||++
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            4456899999999887777799999999999  99999999999999999999999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+||+++++..|..++++|.++|++++
T Consensus        95 lFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999876

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.96  E-value=1.1e-29  Score=187.28  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=100.3

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+..+++++|++.+ .++++|||+|||+|  |++|+++.|+|++++++|+++ ++|++||+|++++++++|||+++||++
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTli   96 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL   96 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            67899999999977 47889999999999  999999999999999999999 999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+||+++++..|..+.++|.++|+++|+
T Consensus        97 lFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           97 VFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999998873

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.96  E-value=8.2e-29  Score=185.24  Aligned_cols=104  Identities=13%  Similarity=0.267  Sum_probs=95.7

Q ss_pred             cEEc-ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +..+ +.++|++.+. .++++|||+|||+||+||+++.|+|+++++++++++.|++||+|++++++++|+|+++||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            5555 4589998776 4889999999999999999999999999999998899999999999999999999999999999


Q ss_pred             ECCeEE--E-------EEEcCCC-HHHHHHHHHHHh
Q 030165          156 KNGEKK--E-------SIIGAVP-KSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v--~-------~~~G~~~-~~~l~~~l~~~l  181 (182)
                      ++|+.+  +       +..|+.+ +++|.++|++++
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            999998  5       8999987 999999999875

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.95  E-value=6.2e-28  Score=176.50  Aligned_cols=136  Identities=33%  Similarity=0.702  Sum_probs=86.2

Q ss_pred             eeccCCCCcccccCcccccCCCCCCCCCcccchhhhhhhhhhccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhh
Q 030165           32 IHLPISNGLNKSNFSFTSSCSSLSLPLGSRSRNSLILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRM  111 (182)
Q Consensus        32 ~~~p~~~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~  111 (182)
                      +.||+|...||.+..+.     ...+.++.       |..+.  +.+.++++++|...+...++ ++|+||++||++|+.
T Consensus         3 ~~~~~~~~~~~~~~~r~-----~~~~~~~~-------c~~~~--~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~   67 (140)
T 1v98_A            3 VTCPKCGAKNRLGTPPP-----GQVPVCGA-------CKTPL--PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRL   67 (140)
T ss_dssp             ------------------------------------------------------------CCCE-EEEEEECTTCHHHHH
T ss_pred             eEcccccccccCCcccc-----cCCccccc-------ccCCC--CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHH
Confidence            68999999999988775     23333333       44443  67889999999997766666 999999999999999


Q ss_pred             hhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          112 IAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       112 ~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +.|.|+++++++++++.|+.+|++++++++++|+|.++||+++|++|+.+.++.|..+.++|.+||+++|+
T Consensus        68 ~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A           68 VSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             HHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            99999999999988899999999999999999999999999999999999999999999999999999874

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.95  E-value=5.9e-27  Score=164.80  Aligned_cols=101  Identities=36%  Similarity=0.699  Sum_probs=91.1

Q ss_pred             cEEc-ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++ +.++|++.+.+ .+++++|+|||+||++|+.+.|.++++++.+++ +.|++||+|++++++++|+|+++||+++|
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence            3445 55789987654 578999999999999999999999999999875 89999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++|+++.++.|. +.++|.++|++.
T Consensus        81 ~~G~~v~~~~G~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           81 KNGQKLDSLSGA-NYDKLLELVEKN  104 (105)
T ss_dssp             ETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCc-CHHHHHHHHHhc
Confidence            999999999995 889999999874

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.94  E-value=5.1e-26  Score=158.86  Aligned_cols=106  Identities=20%  Similarity=0.517  Sum_probs=101.3

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..+.++++++|++.+..++++++|+||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|+++||+++|
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   83 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYF   83 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEE
Confidence            45789999999997768889999999999999999999999999999998899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.|..+.++|.++|++++
T Consensus        84 ~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           84 KDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             ETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            99999999999999999999999986

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.94  E-value=8.8e-26  Score=157.10  Aligned_cols=107  Identities=47%  Similarity=0.926  Sum_probs=101.4

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+.++++++|++.+..++++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            45788999999987778899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|+++++
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           82 KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence            999999999999999999999999874

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.94  E-value=1.8e-25  Score=156.61  Aligned_cols=107  Identities=45%  Similarity=0.928  Sum_probs=101.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+..+++++|.+.+.+++++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   84 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY   84 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEE
Confidence            45789999999987778899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|+++|+
T Consensus        85 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           85 QGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999999874

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.93  E-value=2e-25  Score=155.04  Aligned_cols=106  Identities=58%  Similarity=1.149  Sum_probs=100.7

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .+.++++++|++.+..++++++|+||++||++|+.+.|.++++++++++++.++.+|.+++++++++|+|.++||+++|+
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEe
Confidence            46889999999977788999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+.+.++.|..+.+++.++|+++|+
T Consensus        82 ~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           82 GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999874

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.93  E-value=3.2e-25  Score=153.95  Aligned_cols=106  Identities=38%  Similarity=0.789  Sum_probs=99.7

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+..+++++|++.+ .++++++|+||++||++|+.+.|.++++++.+++++.|+.+|++++++++++|+|.++||+++|
T Consensus         4 ~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~   82 (109)
T 3tco_A            4 DVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIF   82 (109)
T ss_dssp             CCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEE
Confidence            567899999999855 5689999999999999999999999999999998899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|+++|+
T Consensus        83 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           83 VNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             cCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence            999999999999999999999999874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.93  E-value=4.8e-25  Score=152.71  Aligned_cols=106  Identities=42%  Similarity=0.849  Sum_probs=100.1

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+.++++++|+..+..++++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            45789999999987777899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.|..+.++|.++|++++
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence            99999999999999999999999864

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.93  E-value=4e-25  Score=157.41  Aligned_cols=107  Identities=32%  Similarity=0.713  Sum_probs=101.5

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..+..+++++|++.+.+++++++|+||++||++|+.+.|.|+++++++.+++.++.+|++++.+++++|+|.++||+++|
T Consensus        13 ~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~   92 (119)
T 1w4v_A           13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAM   92 (119)
T ss_dssp             SEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEE
T ss_pred             eEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEE
Confidence            55788999999998888899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|++++.
T Consensus        93 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           93 KNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             eCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.93  E-value=3.5e-25  Score=153.18  Aligned_cols=104  Identities=43%  Similarity=0.837  Sum_probs=98.8

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..+.++++++|++.+  .+++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|+++||+++|
T Consensus         3 ~~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            357889999999966  889999999999999999999999999999998899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.|..+.+++.++|+++|
T Consensus        81 ~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           81 KDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             eCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999875

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.93  E-value=3.5e-25  Score=162.22  Aligned_cols=107  Identities=30%  Similarity=0.548  Sum_probs=102.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+.++++++|.+.+..+++++||+||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|+++||+++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF   84 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence            45689999999997788889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.|..+.++|.++|++++
T Consensus        85 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           85 FCHGRPVWEQVGQIYPSILKNAVRDML  111 (140)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             EeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999886

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.93  E-value=5.4e-25  Score=151.97  Aligned_cols=104  Identities=71%  Similarity=1.296  Sum_probs=99.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +..+++++|++.+..++++++|+||++||++|+.+.|.++++++++++++.++.+|.+++++++++|+|.++||++++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   81 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeC
Confidence            67899999999777789999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+.+.++.|..+.+++.++|+++|
T Consensus        82 g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           82 GERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             CeEEEEEecCCCHHHHHHHHHhhC
Confidence            999999999999999999999875

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.93  E-value=2.2e-25  Score=161.30  Aligned_cols=107  Identities=46%  Similarity=0.891  Sum_probs=101.4

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+.++++++|++.+...+++++|+||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|+++||+++|
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  101 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF  101 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            45888999999987778899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|+++|+
T Consensus       102 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B          102 KNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            999999999999999999999999874

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.93  E-value=8.1e-25  Score=153.44  Aligned_cols=107  Identities=35%  Similarity=0.706  Sum_probs=101.4

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+.++++++|+..+...+++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   86 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   86 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEE
Confidence            45899999999987777899999999999999999999999999999988899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|++++.
T Consensus        87 ~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           87 KGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999874

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.93  E-value=5.8e-25  Score=154.84  Aligned_cols=102  Identities=43%  Similarity=0.797  Sum_probs=97.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++++++|++.+  .+++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|++
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKD   80 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEET
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence            6789999999966  88999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+.+.++.|..+.++|.+++++++
T Consensus        81 G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           81 GEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHH
Confidence            999999999999999999999875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.93  E-value=5.1e-25  Score=152.49  Aligned_cols=104  Identities=43%  Similarity=0.896  Sum_probs=98.0

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++++++|+. +..++++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|++
T Consensus         2 v~~l~~~~~~~-~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   80 (105)
T 1nsw_A            2 TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHH-HHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceeccHHhHHH-HHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence            57889999995 66788999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+.+.++.|..+.++|.++|+++|+
T Consensus        81 G~~~~~~~G~~~~~~l~~~l~~~l~  105 (105)
T 1nsw_A           81 GRPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTTTC
T ss_pred             CeEEEEEecCCCHHHHHHHHHHHhC
Confidence            9999999999999999999998874

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=5.6e-25  Score=158.40  Aligned_cols=107  Identities=33%  Similarity=0.596  Sum_probs=100.9

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc----CceEEEEEeCCCChHHHHHcCCCccc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA----GKVACFKLNTDDSPNIATKYGIRSIP  150 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~~l~~~~~I~~iP  150 (182)
                      ...+..+++++|++.+..++++++|+||++||++|+.+.|.++++++++.    +++.|+.+|++++++++++|+|+++|
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   85 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP   85 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeC
Confidence            45689999999999777788999999999999999999999999999997    78999999999999999999999999


Q ss_pred             EEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++|++|+.+.++.|..+.++|.++|++++
T Consensus        86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLF  116 (133)
T ss_dssp             EEEEEETTEEEEEECSCCSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCceEEecCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999876

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.93  E-value=3.7e-25  Score=157.21  Aligned_cols=103  Identities=31%  Similarity=0.661  Sum_probs=95.8

Q ss_pred             ccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           77 EVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .....+.++|++.+.. .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|+|++++++++|+|+++||+++|
T Consensus        13 ~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~   91 (116)
T 3qfa_C           13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQFF   91 (116)
T ss_dssp             CBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEEEE
Confidence            3566789999996543 799999999999999999999999999999987 99999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.|. +.++|.++|+++|
T Consensus        92 ~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           92 KKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             SSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             eCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            999999999999 9999999999875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.92  E-value=4.2e-25  Score=158.63  Aligned_cols=101  Identities=19%  Similarity=0.372  Sum_probs=90.7

Q ss_pred             CccEEcChhhHHHHHHcCCC--cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISSEN--PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~--~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.+.+++.++|.+.+..+++  +|+|+|||+||++|+++.|.|++++++|++ ++|+++|+|+.   +++|+|+++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~-v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT-SEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            46788999999997766554  999999999999999999999999999975 99999999986   5899999999999


Q ss_pred             EEECCeEEEEEEcCC-------CHHHHHHHHHHH
Q 030165          154 FFKNGEKKESIIGAV-------PKSTLSSTLDKY  180 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~-------~~~~l~~~l~~~  180 (182)
                      +|+||++++++.|..       +.++|+.+|.+.
T Consensus        79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999999999975       588899888753

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.92  E-value=7.9e-25  Score=157.41  Aligned_cols=106  Identities=16%  Similarity=0.325  Sum_probs=96.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCCCChHHHHHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-----GKVACFKLNTDDSPNIATKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-----~~v~~~~vd~d~~~~l~~~~~I~~i  149 (182)
                      ...+.++++++|++.+..++++++|+|||+||++|+.+.|.|+++++.+.     +++.|+.+|++++++++++|+|+++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            56789999999999777779999999999999999999999999998764     4699999999999999999999999


Q ss_pred             cEEEEEECCeEE--EEEEcCCCHHHHHHHHHHH
Q 030165          150 PTVLFFKNGEKK--ESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       150 PTl~~f~~G~~v--~~~~G~~~~~~l~~~l~~~  180 (182)
                      ||+++|++|+.+  .++.|..+.++|.+||+++
T Consensus        94 Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           94 PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999988664  5788999999999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.92  E-value=1.9e-24  Score=149.77  Aligned_cols=105  Identities=44%  Similarity=0.871  Sum_probs=98.3

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .+.++++++|+. +...+++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|.++||+++|+
T Consensus         2 ~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (109)
T 2yzu_A            2 KPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFK   80 (109)
T ss_dssp             CCEECCTTTHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             cceEccHhHHHH-HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence            478899999996 5577899999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+.+.++.|..+.++|.++|+++++
T Consensus        81 ~g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           81 DGQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             CCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999998763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.92  E-value=1.9e-25  Score=155.53  Aligned_cols=99  Identities=23%  Similarity=0.341  Sum_probs=80.7

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      +.++|++ +..++++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||+++|++|+.+
T Consensus         7 ~~~~~~~-~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A            7 TIEELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             ---CCSS-STTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred             CHHHHHH-HHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence            5567777 34778999999999999999999999999999995 699999999999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhC
Q 030165          162 ESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       162 ~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .++.|..+.++|.++|+++++
T Consensus        85 ~~~~g~~~~~~l~~~l~~~~e  105 (105)
T 4euy_A           85 LRESRFISLENLERTIQLFEE  105 (105)
T ss_dssp             EEEESSCCHHHHHHHHHTTC-
T ss_pred             EEEeCCcCHHHHHHHHHHhhC
Confidence            999999999999999999874

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.92  E-value=2.4e-24  Score=151.24  Aligned_cols=102  Identities=33%  Similarity=0.744  Sum_probs=94.0

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .....+.++|++ ++.++++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|+++||+++|+
T Consensus         8 ~~~~~~~~~f~~-~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   85 (109)
T 3f3q_A            8 VTQFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLLFK   85 (109)
T ss_dssp             CEECCSHHHHHH-HTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ccCCCCHHHHHH-HHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEEEE
Confidence            345678899998 556799999999999999999999999999999976 999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+.+.++.|. +.++|.++|++++
T Consensus        86 ~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           86 NGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            99999999998 7799999999875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.92  E-value=1.7e-24  Score=153.48  Aligned_cols=107  Identities=43%  Similarity=0.801  Sum_probs=100.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+..+++++|...+..++++++|+||++||++|+.+.|.|+++++++++++.|+.+|++++++++++|+|.++||+++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   90 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLIL   90 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEE
Confidence            45688999999998787889999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.|..+.++|.++|++++
T Consensus        91 ~~~g~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           91 FKDGQPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred             EECCEEEEEecCCCCHHHHHHHHHHHH
Confidence            999999999999999999999998776

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.92  E-value=4.2e-24  Score=148.82  Aligned_cols=103  Identities=24%  Similarity=0.464  Sum_probs=92.0

Q ss_pred             cEEc-ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++ +.++|++.+.. .+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||+++|
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            3444 67899986654 78999999999999999999999999999995 599999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|... ++|.++|++++.
T Consensus        82 ~~G~~~~~~~G~~~-~~l~~~l~~~lg  107 (107)
T 1gh2_A           82 RNKVRIDQYQGADA-VGLEEKIKQHLE  107 (107)
T ss_dssp             ETTEEEEEEESSCH-HHHHHHHHHHHC
T ss_pred             ECCeEEEEEeCCCH-HHHHHHHHHhcC
Confidence            99999999999654 569999998863

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.92  E-value=4.5e-24  Score=149.28  Aligned_cols=105  Identities=35%  Similarity=0.773  Sum_probs=96.0

Q ss_pred             ccEEc-ChhhHHHHHHc-C--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           77 EVQVV-TDSSWENLVIS-S--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        77 ~v~~l-~~~~~~~~~~~-~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .+..+ +.++|++.+.. .  +++++|+||++||++|+.+.|.|+++++++++++.|+.+|++++.+++++|+|+++||+
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            35667 56889886654 3  89999999999999999999999999999987899999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|++|+.+.++.|. +.++|.++|+++++
T Consensus        83 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           83 HVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            999999999999998 99999999999874

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.92  E-value=6.1e-24  Score=151.11  Aligned_cols=106  Identities=29%  Similarity=0.696  Sum_probs=98.3

Q ss_pred             cCccEEcChhhHHHHHHc---CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVIS---SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~---~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      ...+..++.++|+..+..   .+++++|+||++||++|+.+.|.|+++++++++ +.|+.+|++++++++++|+|+++||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt   90 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPT   90 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccE
Confidence            345677899999997765   789999999999999999999999999999987 9999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.|.. .++|.++|++++.
T Consensus        91 ~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           91 FLFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            99999999999999999 9999999999873

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.92  E-value=4.7e-24  Score=146.42  Aligned_cols=103  Identities=42%  Similarity=0.891  Sum_probs=96.9

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      |.++++++|++.+ .++++++|+||++||++|+.+.|.++++++++++ +.++.+|++++++++++|+|+++||+++|++
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            4678999999965 6788999999999999999999999999999987 9999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+.+.++.|..+.+++.++|+++++
T Consensus        79 g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           79 GEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CeEhhhccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999999874

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.92  E-value=4.5e-24  Score=149.56  Aligned_cols=106  Identities=28%  Similarity=0.579  Sum_probs=97.1

Q ss_pred             cCccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~I~~iPTl  152 (182)
                      .+.+..+++++|++.+.. .+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++ ++.+++++|+|+++||+
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSEE
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            466899999999996654 689999999999999999999999999999985 999999998 78999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++++|+.+.++.|.. .++|.++|++++.
T Consensus        83 ~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~  111 (111)
T 2pu9_C           83 KILKENSVVGEVTGAK-YDKLLEAIQAARS  111 (111)
T ss_dssp             EEESSSSEEEEEESSC-HHHHHHHHHHHHC
T ss_pred             EEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            9999999999999984 8999999998863

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.92  E-value=1.7e-24  Score=160.88  Aligned_cols=103  Identities=14%  Similarity=0.292  Sum_probs=95.9

Q ss_pred             EEcChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           79 QVVTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        79 ~~l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      ...+.++|++.+. .+++++||+|||+||++|+.+.|.++++++++++++.|++||+|++++++++|+|.++||+++|++
T Consensus         7 ~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   86 (149)
T 3gix_A            7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN   86 (149)
T ss_dssp             EECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             ecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence            4457889998776 679999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEE---------EEEEc-CCCHHHHHHHHHHHh
Q 030165          158 GEKK---------ESIIG-AVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v---------~~~~G-~~~~~~l~~~l~~~l  181 (182)
                      |+++         .++.| ..+.++|.++|++++
T Consensus        87 G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           87 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             CeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            9999         89999 899999999999875

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.92  E-value=3.8e-25  Score=159.11  Aligned_cols=107  Identities=47%  Similarity=0.926  Sum_probs=94.8

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCCh--------------hhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCG--------------PCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA  141 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~--------------~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~  141 (182)
                      +.+.++++++|+..+..++++++|+||++||+              +|+.+.|.++++++++++++.++++|+|++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            45788999999987778899999999999999              9999999999999999888999999999999999


Q ss_pred             HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          142 TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       142 ~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+|+++||+++|++|+.+.++.|..+.++|.++|+++|+
T Consensus        83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTCC
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998874

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.92  E-value=2.5e-24  Score=154.69  Aligned_cols=107  Identities=26%  Similarity=0.507  Sum_probs=99.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.+.++++++|+..+..++++++|+||++||++|+.+.|.++++++++++++.|+.+|++++.+++++|+|+++||+++
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   95 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKI   95 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEE
Confidence            45689999999999777889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeE-EEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEK-KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~-v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+. +.++.|..+.++|.++|.+.+
T Consensus        96 ~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           96 FGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             ESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             EeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            987765 788999999999999999876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.92  E-value=9.7e-25  Score=155.29  Aligned_cols=106  Identities=28%  Similarity=0.534  Sum_probs=97.4

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..+..+++++|.+.+..++++++|+||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|+++||+++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY   82 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEE
Confidence            45789999999877778899999999999999999999999999999998899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcC----CCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGA----VPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~----~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.|.    .+.++|.++|++++
T Consensus        83 ~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           83 QYERAKKSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             EEEGGGTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             eCCCccceeeccccCcCCHHHHHHHHHHHH
Confidence            877667777776    89999999999886

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.92  E-value=1e-23  Score=145.75  Aligned_cols=103  Identities=35%  Similarity=0.724  Sum_probs=94.9

Q ss_pred             cEEcCh-hhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVVTD-SSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l~~-~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++++ ++|++.+.+ .+++++|+||++||++|+.+.|.++++++++.+++.++.+|.+++++++++|+|.++||+++|
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            467777 889886654 789999999999999999999999999999977899999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+.+.++.| .+.++|.++|+++|
T Consensus        82 ~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           82 KNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             ETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             cCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence            99999999999 68899999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.91  E-value=4.5e-24  Score=172.92  Aligned_cols=107  Identities=30%  Similarity=0.612  Sum_probs=99.7

Q ss_pred             cCccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.+.++|+++|++.+.. .+++|+|+||++||++|+.+.|.|+++++++++++.|++||++++++++++|+|+++||++
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   85 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVY   85 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEE
Confidence            456899999999995543 3899999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+.+.++.|..+.+.+.++|++.+
T Consensus        86 ~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           86 LFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            9999999999999999999999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.91  E-value=4e-24  Score=155.85  Aligned_cols=108  Identities=39%  Similarity=0.801  Sum_probs=97.2

Q ss_pred             ccCccEEcChhhHHHHHHc-----------CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH
Q 030165           74 AVNEVQVVTDSSWENLVIS-----------SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT  142 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~-----------~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~  142 (182)
                      ....+..++.++|...+..           .+++++|+||++||++|+.+.|.++++++++.+++.++.+|+++++++++
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELAR   99 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHH
Confidence            3567899999999997765           57999999999999999999999999999999889999999999999999


Q ss_pred             HcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          143 KYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       143 ~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+|.++||+++| ++|+.+ ++.|..+.++|.++|+++|+
T Consensus       100 ~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          100 DFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HTTCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             HcCCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence            9999999999999 466655 89999999999999999874

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.91  E-value=5.5e-24  Score=154.77  Aligned_cols=106  Identities=26%  Similarity=0.608  Sum_probs=98.0

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      ...+..+++++|++ ....++++||+||++||++|+.+.|.|+++++++.++   +.|+.+|++++.+++++|+|.++||
T Consensus        16 ~~~v~~l~~~~~~~-~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           16 ENGVWVLNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             ETTEEECCTTTHHH-HHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCCCEEcChHhHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            46689999999998 4467899999999999999999999999999999875   9999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+ +.++.|..+.++|.+||++++.
T Consensus        95 ~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A           95 IKILKKGQ-AVDYDGSRTQEEIVAKVREVSQ  124 (140)
T ss_dssp             EEEEETTE-EEECCSCCCHHHHHHHHHHHHS
T ss_pred             EEEEECCc-EEEcCCCCCHHHHHHHHHHhcC
Confidence            99999999 7788999999999999998863

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.91  E-value=7.1e-24  Score=147.70  Aligned_cols=103  Identities=29%  Similarity=0.599  Sum_probs=96.1

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      +.+..+++++|++.+.  +++++|+||++||++|+.+.|.++++++.+.   .++.++.+|++++++++++|+|+++||+
T Consensus         5 ~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            5 STVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            5689999999999665  7899999999999999999999999999875   3599999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++|++|+.+.++.|..+.++|.+||++.
T Consensus        83 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            9999999999999999999999999874

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.91  E-value=9.6e-24  Score=152.26  Aligned_cols=103  Identities=26%  Similarity=0.520  Sum_probs=95.8

Q ss_pred             CccEEcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           76 NEVQVVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        76 ~~v~~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ..+.++++ ++|++.+ ..++++||+||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|.++||+++
T Consensus        19 ~mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i   96 (125)
T 1r26_A           19 PSVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFII   96 (125)
T ss_dssp             SCCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            34788888 9999955 788999999999999999999999999999996 59999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.| .+.++|.++|++++
T Consensus        97 ~~~G~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           97 ARSGKMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence            999999999999 68899999999886

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.91  E-value=6.1e-24  Score=154.74  Aligned_cols=106  Identities=37%  Similarity=0.851  Sum_probs=97.9

Q ss_pred             cCccEEcChhhHHHHHHc-----------CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHH
Q 030165           75 VNEVQVVTDSSWENLVIS-----------SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATK  143 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-----------~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~  143 (182)
                      ...+..+++++|.+.+..           ++++++|+||++||++|+.+.|.|+++++++++++.|+.+|++++++++++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence            456889999999987653           578999999999999999999999999999988899999999999999999


Q ss_pred             cCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          144 YGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+|+++||+++| ++|+.+ ++.|..+.++|.++|++++
T Consensus        88 ~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFL  125 (136)
T ss_dssp             TTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHh
Confidence            999999999999 799887 7889999999999999876

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.91  E-value=1.5e-23  Score=150.75  Aligned_cols=106  Identities=35%  Similarity=0.705  Sum_probs=96.2

Q ss_pred             cCccEEc-ChhhHHHHHHc---CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc
Q 030165           75 VNEVQVV-TDSSWENLVIS---SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIP  150 (182)
Q Consensus        75 ~~~v~~l-~~~~~~~~~~~---~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iP  150 (182)
                      .+.+.++ +.++|++.+..   ++++++|+||++||++|+.+.|.|++++++++ ++.|+.+|+|++.+++++|+|+++|
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~P   93 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMP   93 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccC
Confidence            3456777 77889886654   68999999999999999999999999999997 5999999999999999999999999


Q ss_pred             EEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+++|++|+.+.++.| .+.++|.++|+++++
T Consensus        94 t~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           94 TFMFLKEGKILDKVVG-AKKDELQSTIAKHLA  124 (124)
T ss_dssp             EEEEEETTEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred             EEEEEECCEEEEEEeC-CCHHHHHHHHHHhcC
Confidence            9999999999999999 489999999999874

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.91  E-value=8e-24  Score=148.83  Aligned_cols=104  Identities=33%  Similarity=0.692  Sum_probs=96.3

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .....++.++|++.+ +.+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++|
T Consensus         9 ~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   86 (112)
T 1syr_A            9 MVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVY   86 (112)
T ss_dssp             CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEE
T ss_pred             eEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            446888999999955 6789999999999999999999999999999875 99999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|. +.++|.++|+++++
T Consensus        87 ~~G~~~~~~~G~-~~~~l~~~l~~~l~  112 (112)
T 1syr_A           87 KNGSSVDTLLGA-NDSALKQLIEKYAA  112 (112)
T ss_dssp             ETTEEEEEEESC-CHHHHHHHHHTTC-
T ss_pred             ECCcEEEEEeCC-CHHHHHHHHHHhhC
Confidence            999999999998 99999999998874

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.91  E-value=1.8e-23  Score=149.25  Aligned_cols=108  Identities=29%  Similarity=0.601  Sum_probs=98.2

Q ss_pred             hccCccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCccc
Q 030165           73 EAVNEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYGIRSIP  150 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~I~~iP  150 (182)
                      ...+.+..+++++|.+.+.. .+++++|+||++||++|+.+.|.++++++++++ +.++.+|++ ++++++++|+|+++|
T Consensus        15 ~~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             hcCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeee
Confidence            33567899999999987664 789999999999999999999999999999975 999999998 689999999999999


Q ss_pred             EEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          151 TVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |++++++|+.+.++.|.. .+++.++|+++++
T Consensus        94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           94 TFKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             EEEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             EEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            999999999999999986 8999999998763

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.91  E-value=7.6e-24  Score=166.57  Aligned_cols=108  Identities=46%  Similarity=0.914  Sum_probs=102.7

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.+..+|+++|++.+..++++++|+||++||++|+.+.|.++++++++.+++.|+.||++++++++++|+|.++||+++
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~   90 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   90 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEE
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence            36689999999999778889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |++|+.+.++.|..+.++|.++|+++++
T Consensus        91 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           91 FKNGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EECCeEEEEeccccChHHHHHHHHhhcc
Confidence            9999999999999999999999998863

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.91  E-value=7.6e-24  Score=150.16  Aligned_cols=103  Identities=28%  Similarity=0.622  Sum_probs=91.7

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+..+++.+..+.+++++++++|+||++||++|+.+.|.|+++++++++ +.|+.+|++++++++++|+|+++||+++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   90 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLG   90 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEE
Confidence            44566666554444667789999999999999999999999999999987 99999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++|+.+.++.|.. .++|.++|+++
T Consensus        91 ~~G~~~~~~~G~~-~~~l~~~l~~~  114 (114)
T 2oe3_A           91 KDGQLIGKIIGAN-PTALEKGIKDL  114 (114)
T ss_dssp             ETTEEEEEEESSC-HHHHHHHHHTC
T ss_pred             eCCeEEEEEeCCC-HHHHHHHHHhC
Confidence            9999999999998 99999999763

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-23  Score=147.33  Aligned_cols=103  Identities=18%  Similarity=0.451  Sum_probs=89.6

Q ss_pred             cEEcCh-hhHHHHHH--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           78 VQVVTD-SSWENLVI--SSENPVLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        78 v~~l~~-~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.++++ ++|++.+.  ..+++++|+||++||++|+.+.|.++++++++ .+++.|+.+|++++++++++|+|+++||++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   81 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI   81 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence            567777 89998554  34899999999999999999999999999985 245999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+.+.++.|.. .++|.++|++++
T Consensus        82 ~~~~G~~~~~~~G~~-~~~l~~~l~~~~  108 (112)
T 3d6i_A           82 IIHKGTILKELSGAD-PKEYVSLLEDCK  108 (112)
T ss_dssp             EEETTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCC-HHHHHHHHHHHH
Confidence            999999999999974 556999999876

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.91  E-value=2.7e-23  Score=143.58  Aligned_cols=101  Identities=32%  Similarity=0.717  Sum_probs=92.4

Q ss_pred             EEc-ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           79 QVV-TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        79 ~~l-~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      ..+ +.++|++.+.. .+++++|+||++||++|+.+.|.++++++++++ +.++.+|.+++++++++|+|.++||+++|+
T Consensus         3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   81 (105)
T 3m9j_A            3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFK   81 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence            344 56778875543 689999999999999999999999999999986 999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+.+.++.|. +.++|.++|+++|
T Consensus        82 ~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           82 KGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CCeEEEEEeCC-CHHHHHHHHHHhC
Confidence            99999999999 9999999999875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.91  E-value=1.3e-23  Score=148.66  Aligned_cols=102  Identities=32%  Similarity=0.696  Sum_probs=94.0

Q ss_pred             ccEEcCh-hhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTD-SSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~-~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.++++ ++|++.+.. .+++++|+||++||++|+.+.|.++++++++  ++.++.+|++++++++++|+|+++||+++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIA   91 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEE
Confidence            3778887 899986654 7899999999999999999999999999988  69999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.| .+.++|.++|+++|
T Consensus        92 ~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           92 IKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            999999999999 68899999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.91  E-value=2.9e-23  Score=143.00  Aligned_cols=101  Identities=34%  Similarity=0.700  Sum_probs=92.5

Q ss_pred             EEcCh-hhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           79 QVVTD-SSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        79 ~~l~~-~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .++++ ++|++.+.. .+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            45666 889886654 78999999999999999999999999999987 5999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+.+.++.| .+.++|.++|++++
T Consensus        81 ~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           81 DGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             TTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             CCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            9999999999 68999999999875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.91  E-value=2.6e-24  Score=155.00  Aligned_cols=97  Identities=23%  Similarity=0.475  Sum_probs=89.1

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      +++.+.. ...++++++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|+|+++||+++|++|+.+
T Consensus        31 ~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~  109 (128)
T 3ul3_B           31 GSNIING-VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML  109 (128)
T ss_dssp             CCSSSSB-TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CccHHHH-HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE
Confidence            3333433 567899999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHH
Q 030165          162 ESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       162 ~~~~G~~~~~~l~~~l~~  179 (182)
                      .++.|..+.++|.++|++
T Consensus       110 ~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          110 ARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEESSCCCHHHHHHHHTT
T ss_pred             EEecCCCCHHHHHHHHHh
Confidence            999999999999999975

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.91  E-value=7.6e-24  Score=156.14  Aligned_cols=100  Identities=15%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           82 TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        82 ~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +.++|++.+.. ++++++|+|||+||++|+.+.|.++++++++.+++.|+++|+|++++++++|+|+++||+++|++|+.
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            57889876665 78999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EEE---------EEcCCC-HHHHHHHHHHHh
Q 030165          161 KES---------IIGAVP-KSTLSSTLDKYV  181 (182)
Q Consensus       161 v~~---------~~G~~~-~~~l~~~l~~~l  181 (182)
                      +..         +.|..+ .++|.++|++++
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            873         556664 899999999875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.90  E-value=7e-24  Score=154.48  Aligned_cols=104  Identities=18%  Similarity=0.306  Sum_probs=95.6

Q ss_pred             ccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------CCChHHHHHc
Q 030165           74 AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT---------DDSPNIATKY  144 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~---------d~~~~l~~~~  144 (182)
                      ..+.+..++.++|++.+. +  +++|+||++||++|+.+.|.+++++++++  +.|+.+|+         +++++++++|
T Consensus        14 ~~~~v~~l~~~~~~~~~~-~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           14 EDGRLIYITPEEFRQLLQ-G--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             ETTEEEECCHHHHHHHHT-S--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccCceeecCHHHHHHHhC-C--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            456789999999998553 3  99999999999999999999999999986  89999999         7888999999


Q ss_pred             CCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          145 GIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       145 ~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|.++||+++|++|+.+.++.|..+.+.+.++++++++
T Consensus        89 ~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           89 GVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG  126 (135)
T ss_dssp             TCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             CCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999998863

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=148.99  Aligned_cols=103  Identities=26%  Similarity=0.572  Sum_probs=93.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.+.++++++|++.+ .  +.++|+||++||++|+.+.|.++++++++.+ ++.|+.+|++++.+++++|+|+++||++
T Consensus         6 ~~~v~~l~~~~f~~~~-~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   82 (126)
T 1x5e_A            6 SGNVRVITDENWRELL-E--GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIY   82 (126)
T ss_dssp             CCSEEECCTTTHHHHT-S--SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCccEEecHHHHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEE
Confidence            4568899999999844 3  2499999999999999999999999999985 6999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+ +.++.|..+.++|.++|++++
T Consensus        83 ~~~~G~-~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           83 HCKDGE-FRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             EEETTE-EEECCSCCCHHHHHHHHHTCG
T ss_pred             EEeCCe-EEEeecCCCHHHHHHHHHHHh
Confidence            999998 578899999999999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.90  E-value=9.7e-23  Score=151.38  Aligned_cols=106  Identities=34%  Similarity=0.647  Sum_probs=94.3

Q ss_pred             cCccEEcC-hhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVT-DSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~-~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .+.+..++ .++|++.+... ++++||+||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|+++||+
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   89 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTF   89 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCEE
Confidence            45577776 58898855443 8999999999999999999999999999985 599999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|++|+.+.++.|. +.++|.++|+++++
T Consensus        90 ~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~  118 (153)
T 2wz9_A           90 LFFKNSQKIDRLDGA-HAPELTKKVQRHAS  118 (153)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHHSC
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence            999999999999995 77889999998863

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.90  E-value=1.3e-22  Score=142.81  Aligned_cols=105  Identities=30%  Similarity=0.676  Sum_probs=94.9

Q ss_pred             CccEEc-ChhhHHHHHHc---CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVIS---SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~~---~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.+..+ +.++|++.+..   .+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPT   84 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence            446666 57889886654   48999999999999999999999999999997 59999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.| .+.+++.++|+++++
T Consensus        85 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           85 FLFIKDGEKVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             EEEEETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEeCCeEEEEecC-CCHHHHHHHHHHHhc
Confidence            999999999999999 589999999999874

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.90  E-value=2.2e-23  Score=159.46  Aligned_cols=107  Identities=13%  Similarity=0.186  Sum_probs=92.9

Q ss_pred             cCccEEcChhhHHHHHHc-CCCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCCCChHHH
Q 030165           75 VNEVQVVTDSSWENLVIS-SENPVLVEFWA-------PWCGPCRMIAPAIEELAKEYA-----GKVACFKLNTDDSPNIA  141 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a-------~wC~~C~~~~p~l~~~a~~~~-----~~v~~~~vd~d~~~~l~  141 (182)
                      ...++++|+++|++++.. ++.+|||+|||       +||++|+++.|+|++++++|.     +++.|++||+|++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            456899999999996653 46789999999       499999999999999999998     88999999999999999


Q ss_pred             HHcCCCcccEEEEEECCeEE------------EEE---Ec-CCCHHHHHHHHHHHh
Q 030165          142 TKYGIRSIPTVLFFKNGEKK------------ESI---IG-AVPKSTLSSTLDKYV  181 (182)
Q Consensus       142 ~~~~I~~iPTl~~f~~G~~v------------~~~---~G-~~~~~~l~~~l~~~l  181 (182)
                      ++|||+++||+++|++|+..            .++   .| ..+++.|.+||.+.+
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t  152 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL  152 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence            99999999999999988532            233   24 688999999998765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.90  E-value=5.1e-23  Score=146.98  Aligned_cols=104  Identities=37%  Similarity=0.843  Sum_probs=94.7

Q ss_pred             ccEEcC-hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVT-DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~-~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+..++ .++|++.+ ..+++++|+||++||++|+.+.|.+++++++++++ +.++.+|++++++++++|+|.++||+++
T Consensus        16 ~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           16 SVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             CEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred             ceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence            345555 48888855 78899999999999999999999999999998865 9999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |++|+.+.++.|. +.++|.++|+++++
T Consensus        95 ~~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           95 FKNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             EETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             EECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence            9999999999998 99999999999874

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.90  E-value=9.8e-23  Score=142.48  Aligned_cols=104  Identities=31%  Similarity=0.671  Sum_probs=94.5

Q ss_pred             CccEEc-ChhhHHHHHHc---CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVIS---SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~~---~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.+..+ +.++|++.+..   .+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccE
Confidence            346666 67899886654   58999999999999999999999999999987 59999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+.+.++.| .+.++|.++|++++
T Consensus        83 ~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            999999999999999 68899999999886

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.90  E-value=2.5e-23  Score=146.20  Aligned_cols=101  Identities=15%  Similarity=0.376  Sum_probs=91.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +..++.++| + ...++++++|+||++||++|+.+.|.++++++.++ ++.|+.+|++++++++++|+|+++||+++|++
T Consensus         5 ~~~~~~~~f-~-~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A            5 RDITTEAGM-A-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             SBCGGGCSH-H-HHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             eecCCHHHH-H-HHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            456788899 5 34567899999999999999999999999999887 59999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+.+.++.|..++++|.++|+++.
T Consensus        82 G~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           82 GKVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHTC-
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHHh
Confidence            999999999999999999998764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.89  E-value=1.5e-22  Score=147.22  Aligned_cols=104  Identities=27%  Similarity=0.643  Sum_probs=93.9

Q ss_pred             CccEEc-ChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.+..+ +.++|.+.+.   ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|+|++++++++|+|+++||
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATPT  102 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCcccE
Confidence            445556 5789988664   358999999999999999999999999999986 59999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+.+.++.|. +.++|.++|++++
T Consensus       103 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  131 (139)
T 3d22_A          103 FFFLRDGQQVDKLVGA-NKPELHKKITAIL  131 (139)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEcCCeEEEEEeCC-CHHHHHHHHHHHh
Confidence            9999999999999998 8999999999876

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.89  E-value=9.7e-24  Score=148.55  Aligned_cols=107  Identities=27%  Similarity=0.611  Sum_probs=97.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.+.++++++|++. ...+++++|+||++||++|+.+.|.++++++.+.   .++.++.+|++++.+++++|+|+++||
T Consensus         6 ~~~v~~l~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            6 EDHVLVLRKSNFAEA-LAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHH-HHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCcEEechhhHHHH-HccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            456899999999984 4568899999999999999999999999999986   359999999999999999999999999


Q ss_pred             EEEEECCeEE--EEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKK--ESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v--~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+  .++.|..+.++|.++|+++++
T Consensus        85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            9999999977  888999999999999998763

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.89  E-value=7.7e-24  Score=156.58  Aligned_cols=104  Identities=17%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHhcCceE--EEEEeCCCChHHHHHcCCCcccEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEYAGKVA--CFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~a~~~~~~v~--~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .+..+++++|++.+ .+++.++|+||++|  |++|+++.|.|++++++| +++.  |++||+|++++++++|+|+++||+
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence            67889999999955 45567899999987  999999999999999999 7789  999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|++|+++.++.|..+.++|.++|+++++
T Consensus        96 ~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           96 LVFTDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             EEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999998863

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.89  E-value=1.9e-23  Score=148.18  Aligned_cols=104  Identities=13%  Similarity=0.276  Sum_probs=89.0

Q ss_pred             hccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC------ChHHHHHcCC
Q 030165           73 EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD------SPNIATKYGI  146 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~------~~~l~~~~~I  146 (182)
                      +....+..++.++|.+. ..++++++|+||++||++|+.+.|.++++++++..++.+  +|++.      ..+++++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i   85 (118)
T 1zma_A            9 DNIKDLEVTTVVRAQEA-LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF--INSEEPSQLNDLQAFRSRYGI   85 (118)
T ss_dssp             HHTTTSEECCHHHHHHH-HHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEE--EETTCGGGHHHHHHHHHHHTC
T ss_pred             HHHhhhhcCCHHHHHHH-HhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEE--EECCCcCcHHHHHHHHHHcCC
Confidence            34566788999999985 466789999999999999999999999999998755554  44443      3478899999


Q ss_pred             CcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       147 ~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +++||+++|++|+.+.++.|..+.++|.+||++
T Consensus        86 ~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~k  118 (118)
T 1zma_A           86 PTVPGFVHITDGQINVRCDSSMSAQEIKDFAGL  118 (118)
T ss_dssp             CSSCEEEEEETTEEEEECCTTCCHHHHHHHHTC
T ss_pred             CCCCeEEEEECCEEEEEecCCCCHHHHHHHhhC
Confidence            999999999999999999999999999999863

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.89  E-value=4e-23  Score=147.96  Aligned_cols=104  Identities=19%  Similarity=0.311  Sum_probs=92.3

Q ss_pred             cEEcChhhHH----HHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe--CCCChHHHHHcCCCcccE
Q 030165           78 VQVVTDSSWE----NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN--TDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        78 v~~l~~~~~~----~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd--~d~~~~l~~~~~I~~iPT  151 (182)
                      +..++..+++    ......+++++|+||++||++|+.+.|.++++++++.+++.++.+|  ++++.+++++|+|.++||
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt   85 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPT   85 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSE
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeE
Confidence            3445555554    1245678999999999999999999999999999997789999999  999999999999999999


Q ss_pred             EEEEE-CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFK-NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~-~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|+ +|+.+.++.|..+.++|.++|++++
T Consensus        86 ~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           86 TVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             EEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            99998 9999999999999999999999876

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.89  E-value=1.6e-22  Score=143.97  Aligned_cols=103  Identities=28%  Similarity=0.583  Sum_probs=92.3

Q ss_pred             ccEEc--ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVV--TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l--~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+..+  +.++|.+.+.+++++++|+||++||++|+.+.|.|+++++++ +++.|+.+|++++++++++|+|+++||+++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFF   82 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            35666  678898767778999999999999999999999999999999 679999999999999999999999999999


Q ss_pred             EEC----CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKN----GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~----G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++    |+++.++.|..+ ++|++.++++.
T Consensus        83 ~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~  112 (118)
T 2f51_A           83 VKKEGNEIKTLDQFVGADV-SRIKADIEKFK  112 (118)
T ss_dssp             EEEETTEEEEEEEEESCCH-HHHHHHHHHHC
T ss_pred             EeCCCCcceEEEeecCCCH-HHHHHHHHHhh
Confidence            988    999999999765 45999988763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=6.6e-24  Score=154.59  Aligned_cols=104  Identities=19%  Similarity=0.361  Sum_probs=93.5

Q ss_pred             CccEEcChhhHHHHHHcCC-CcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCC------
Q 030165           76 NEVQVVTDSSWENLVISSE-NPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIR------  147 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~-~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~------  147 (182)
                      +.+..+++++|++.+...+ ++++|+||++||++|+.+.|.|+++++++.+ ++.|+.+|++++++++++|+|.      
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcC
Confidence            5588999999999776544 4999999999999999999999999999985 7999999999999999999999      


Q ss_pred             cccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          148 SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       148 ~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      ++||+++|++|+++.++.|..+.++|.+||++
T Consensus        87 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           87 QLPTLILFQGGKEAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             CSSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred             CCCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence            99999999999999999999887777666543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.89  E-value=1.1e-22  Score=158.39  Aligned_cols=106  Identities=25%  Similarity=0.400  Sum_probs=100.3

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+..+++++|+..+ .+++++||+||++||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++||+++
T Consensus        96 ~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  174 (210)
T 3apq_A           96 DPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  174 (210)
T ss_dssp             CTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEE
Confidence            4668999999999955 778999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.|..+.++|.++|++++
T Consensus       175 ~~~G~~~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          175 FRSGMAAVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             ECTTSCCEECCSCCCHHHHHHHHHHHH
T ss_pred             EECCCceeEecCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999876

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.88  E-value=1.7e-22  Score=147.00  Aligned_cols=103  Identities=22%  Similarity=0.475  Sum_probs=91.3

Q ss_pred             CccEEcCh-hhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTD-SSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~-~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.+.++++ ++|+..+.. .++++||+||++||++|+.+.|.|+++++++  ++.|+.+|++++.+++++|+|+++||++
T Consensus        20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   97 (133)
T 3cxg_A           20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFE   97 (133)
T ss_dssp             EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEEE
Confidence            44677775 788875544 3579999999999999999999999998887  4999999999999999999999999999


Q ss_pred             EEE--CCe--EEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFK--NGE--KKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~--~G~--~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+  +|+  ++.++.|. +.++|.++|++++
T Consensus        98 ~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           98 FYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             EEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             EEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence            997  998  88999998 8999999999886

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=6.8e-24  Score=153.01  Aligned_cols=108  Identities=28%  Similarity=0.603  Sum_probs=95.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .+.+..+++++|+..+..++++++|+||++||++|+.+.|.|+++++++.  +++.|+.+|++++..++++|+|+++||+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            46689999999998666678999999999999999999999999999997  4699999999999999999999999999


Q ss_pred             EEEECCeEEE--EEE-cCCCHHHHHHHHHHHhC
Q 030165          153 LFFKNGEKKE--SII-GAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       153 ~~f~~G~~v~--~~~-G~~~~~~l~~~l~~~l~  182 (182)
                      ++|++|+.+.  ++. |..+.++|.+||++++.
T Consensus        86 ~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           86 YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             EEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             EEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence            9998876543  455 66899999999998763

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.88  E-value=3.1e-23  Score=147.04  Aligned_cols=104  Identities=29%  Similarity=0.581  Sum_probs=93.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-----ceEEEEEeCCCChHHHHHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-----KVACFKLNTDDSPNIATKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-----~v~~~~vd~d~~~~l~~~~~I~~i  149 (182)
                      .+.+.++++++|++.+..++++++|+||++||++|+.+.|.|+++++++.+     ++.|+.+|+++++ +++  +|+++
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~   82 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGF   82 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSS
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcC
Confidence            466899999999986567889999999999999999999999999999987     7999999999876 554  99999


Q ss_pred             cEEEEEECCeE--EEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFKNGEK--KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~~G~~--v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||+++|++|+.  +.++.|..+.++|.+||++++
T Consensus        83 Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           83 PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence            99999987755  778899999999999999876

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.88  E-value=6.5e-22  Score=155.58  Aligned_cols=105  Identities=26%  Similarity=0.612  Sum_probs=97.3

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      ...+..+++++|+. +..++++++|+|||+||++|+.+.|.|+++++++.++   +.++.+|++++.+++++|+|+++||
T Consensus        14 ~~~v~~l~~~~~~~-~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (241)
T 3idv_A           14 ENGVLVLNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPT   92 (241)
T ss_dssp             ETTEEEECTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCcEEecccCHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCE
Confidence            46689999999998 5567899999999999999999999999999999876   9999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+.+ ++.|..+.+++.+++++.+
T Consensus        93 ~~~~~~g~~~-~~~g~~~~~~l~~~i~~~~  121 (241)
T 3idv_A           93 IKILKKGQAV-DYEGSRTQEEIVAKVREVS  121 (241)
T ss_dssp             EEEEETTEEE-ECCSCSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCcc-cccCcccHHHHHHHHhhcc
Confidence            9999999887 5889999999999999875

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=2.5e-22  Score=146.52  Aligned_cols=101  Identities=18%  Similarity=0.356  Sum_probs=90.8

Q ss_pred             CccEEcChhhHHHHHHcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.+.+++.++|.+.+...  ++++||+||++||++|+.+.|.|+++++++. ++.|++||++++.   ++|+|+++||++
T Consensus        10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt~~   85 (135)
T 2dbc_A           10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPTIF   85 (135)
T ss_dssp             CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSEEE
T ss_pred             CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCEEE
Confidence            558888999999977653  3699999999999999999999999999996 5999999999876   689999999999


Q ss_pred             EEECCeEEEEEEcCC-------CHHHHHHHHHHH
Q 030165          154 FFKNGEKKESIIGAV-------PKSTLSSTLDKY  180 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~-------~~~~l~~~l~~~  180 (182)
                      +|++|+++.++.|..       +.++|+++|+++
T Consensus        86 ~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           86 VYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             EESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            999999999999986       789999999875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.4e-22  Score=162.52  Aligned_cols=109  Identities=24%  Similarity=0.504  Sum_probs=99.5

Q ss_pred             hccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CChHHHHHcCCCccc
Q 030165           73 EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIP  150 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iP  150 (182)
                      .....+.++++++|++.+...+++++|+|||+||++|+.+.|.|+++++++.+++.++.+|+|  ++.+++++|+|.++|
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~P   93 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFP   93 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSS
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccc
Confidence            345678999999999977677899999999999999999999999999999988999999998  688999999999999


Q ss_pred             EEEEEECCe-----------------EEEEEEcCCCHHHHHHHHHHHh
Q 030165          151 TVLFFKNGE-----------------KKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~~G~-----------------~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++|++|+                 ....+.|..+.+.|.+|+.+.+
T Consensus        94 t~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             EEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             eEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            999999987                 4678889999999999998765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.79  E-value=4.1e-24  Score=147.19  Aligned_cols=104  Identities=60%  Similarity=1.088  Sum_probs=97.7

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +.++++++|.+.+..++++++|+||++||++|+.+.|.++++++++++++.++.+|++++.+++++|+|.++||+++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            57789999998777889999999999999999999999999999998789999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+.+.++.|..+.+++.++|+++|
T Consensus        83 g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           83 GQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence            999999999999999999998875

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=165.23  Aligned_cols=105  Identities=23%  Similarity=0.481  Sum_probs=94.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh------cCceEEEEEeCCCChHHHHHcCCCcc
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY------AGKVACFKLNTDDSPNIATKYGIRSI  149 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~------~~~v~~~~vd~d~~~~l~~~~~I~~i  149 (182)
                      +.+..+++++|+. ++.++++++|+|||+||++|+.+.|.|+++++.+      .+++.+++||++++.+++++|+|+++
T Consensus         5 ~~v~~l~~~~f~~-~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            5 SEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ---CBCCTTTHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CceEECCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            4578899999998 4566889999999999999999999999999998      45699999999999999999999999


Q ss_pred             cEEEEEECCeEEE-EEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFKNGEKKE-SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~~G~~v~-~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||+++|++|+.+. .+.|..+.+.|.+||++.+
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~  116 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQK  116 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhc
Confidence            9999999999887 4889999999999999876

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.86  E-value=2.8e-21  Score=151.06  Aligned_cols=105  Identities=21%  Similarity=0.365  Sum_probs=95.4

Q ss_pred             ccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhc----CceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           77 EVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYA----GKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      ....++++.++. +...++++ +|+||++||++|+.+.|.++++++++.    +++.++.+|++++++++++|+|.++||
T Consensus       117 ~~~~l~~~~~~~-~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  195 (226)
T 1a8l_A          117 EETNLMDETKQA-IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPK  195 (226)
T ss_dssp             TCCCCCHHHHHH-HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCE
T ss_pred             CCCCCCHHHHHH-HHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCe
Confidence            456678888887 44556666 999999999999999999999999998    579999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.|..+.++|.++|+++++
T Consensus       196 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  226 (226)
T 1a8l_A          196 IVIQVNGEDRVEFEGAYPEKMFLEKLLSALS  226 (226)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEeCCceeEEEcCCCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999874

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.86  E-value=1.4e-21  Score=141.04  Aligned_cols=92  Identities=22%  Similarity=0.454  Sum_probs=86.1

Q ss_pred             HcCCCcEEEEEEcCCChhhhhhhHHHH--HHHHHhcCceEEEEEeC---CCChHHHHHcCC---CcccEEEEE-ECCeEE
Q 030165           91 ISSENPVLVEFWAPWCGPCRMIAPAIE--ELAKEYAGKVACFKLNT---DDSPNIATKYGI---RSIPTVLFF-KNGEKK  161 (182)
Q Consensus        91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~--~~a~~~~~~v~~~~vd~---d~~~~l~~~~~I---~~iPTl~~f-~~G~~v  161 (182)
                      ...+++++|+||++||++|+.+.|.|+  ++++.+.+++.++.+|+   +++.+++++|+|   .++||+++| ++|+.+
T Consensus        26 ~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             HhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            357899999999999999999999999  99999977899999999   999999999999   999999999 799999


Q ss_pred             EEEEc-------CCCHHHHHHHHHHHhC
Q 030165          162 ESIIG-------AVPKSTLSSTLDKYVE  182 (182)
Q Consensus       162 ~~~~G-------~~~~~~l~~~l~~~l~  182 (182)
                      .+..|       ..+.+++.++|+++.+
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~e  133 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKITE  133 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHHHC
T ss_pred             EEecCCcccccccCCHHHHHHHHHHhcC
Confidence            99999       7899999999998864

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=3e-21  Score=138.52  Aligned_cols=103  Identities=21%  Similarity=0.517  Sum_probs=90.2

Q ss_pred             EEcChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCccc
Q 030165           79 QVVTDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIP  150 (182)
Q Consensus        79 ~~l~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iP  150 (182)
                      ..++..+|++.+.   ..+++++|+||++||++|+.+.|.+   +++.+.+..++.++.+|++  ++..++++|+|.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            3456677776543   4689999999999999999999999   7788777777999999998  577899999999999


Q ss_pred             EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          151 TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++| ++|+++.++.|..+.++|.++|++++
T Consensus        89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             EEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            99999 69999999999999999999999886

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.85  E-value=5.2e-21  Score=165.34  Aligned_cols=104  Identities=33%  Similarity=0.594  Sum_probs=98.2

Q ss_pred             ccEEcChhhHHHHHHcCC---CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           77 EVQVVTDSSWENLVISSE---NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~---~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.++++++|++.+ .++   ++++|+|||+||++|+++.|.|+++++.+.+++.|++||++++++++++|||+++||++
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   80 (481)
T 3f8u_A            2 DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLK   80 (481)
T ss_dssp             CCEEECTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred             ceEEecHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            47889999999966 555   89999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+.+.++.|..+.+.|.+|+.+.+
T Consensus        81 ~~~~g~~~~~~~G~~~~~~l~~~~~~~~  108 (481)
T 3f8u_A           81 IFRDGEEAGAYDGPRTADGIVSHLKKQA  108 (481)
T ss_dssp             EEETTEEEEECCSCSSHHHHHHHHHHHT
T ss_pred             EEeCCceeeeecCccCHHHHHHHHHhhc
Confidence            9999999999999999999999999876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.85  E-value=4.3e-21  Score=152.47  Aligned_cols=106  Identities=24%  Similarity=0.436  Sum_probs=94.3

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeC--CCChHHHHHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNT--DDSPNIATKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~--d~~~~l~~~~~I~~i  149 (182)
                      .+.+.++++++|+..+..++++++|+|||+||++|+.+.|.++++++++.+   .+.|+.+|+  +++.+++++|+|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            466899999999998888889999999999999999999999999999986   799999999  678999999999999


Q ss_pred             cEEEEEECCeEE-----EEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFKNGEKK-----ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~~G~~v-----~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||+++|++|+.+     .++.| .+.+.|.++|.++|
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l  126 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDAL  126 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHH
Confidence            999999874332     15555 69999999999876

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.85  E-value=8.8e-21  Score=149.09  Aligned_cols=105  Identities=26%  Similarity=0.565  Sum_probs=95.9

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---VACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      ...+..++.++|+..+ ..+++++|+||++||++|+.+.|.++++++++.++   +.|+++|++++++++++|+|.++||
T Consensus       129 ~~~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  207 (241)
T 3idv_A          129 PEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT  207 (241)
T ss_dssp             CCSSEECCTTTHHHHH-HHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             cccceeccHHHHHHhh-ccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCE
Confidence            3467889999999855 56789999999999999999999999999999765   9999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+.+. +.|..+.++|.+||++.+
T Consensus       208 ~~~~~~g~~~~-~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          208 LKIFRKGRPYD-YNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             EEEEETTEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred             EEEEECCeEEE-ecCCCCHHHHHHHHHhhh
Confidence            99999999877 889999999999999875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.85  E-value=1.7e-21  Score=141.69  Aligned_cols=101  Identities=10%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCc--ccEEEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRS--IPTVLFF  155 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~--iPTl~~f  155 (182)
                      +.++|+++|++. ..++.+++|+|||+ |++|+++.|.|++++++|.+++.|+++|+|++++++++|||++  +||+++|
T Consensus         8 v~~~t~~~f~~~-~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A            8 IGEIGPETYSDY-MSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             SEECCHHHHHHH-HHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             eeccChHHHHHH-hcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE
Confidence            678999999985 57889999999999 8999999999999999999999999999999999999999999  9999999


Q ss_pred             EC--CeEEEEEE--cCCCHHHHHHHHHHHh
Q 030165          156 KN--GEKKESII--GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~--G~~v~~~~--G~~~~~~l~~~l~~~l  181 (182)
                      ++  |++ .+..  |..+.++|.+||++++
T Consensus        86 ~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           86 EVAKNQK-FPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             CTTTCCB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred             ecCcCcc-cCCCCccccCHHHHHHHHHHHH
Confidence            87  666 4665  9999999999999886

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.85  E-value=1.4e-21  Score=139.68  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCC--hHHHHHcCCCcccEEEEEECCeEEEEEEcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDS--PNIATKYGIRSIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~  168 (182)
                      +...+||+|||+||++|++|.+.+....+..  ...+.++++|++++  ++++.+|+|.++|||++|+||+++.|+.|.+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            4578999999999999999987553322110  01267888888876  5789999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHh
Q 030165          169 PKSTLSSTLDKYV  181 (182)
Q Consensus       169 ~~~~l~~~l~~~l  181 (182)
                      ++++|.+||++++
T Consensus        97 ~~~~f~~~L~~~l  109 (116)
T 3dml_A           97 GEDFFWPMLARLI  109 (116)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.85  E-value=8.4e-21  Score=165.12  Aligned_cols=106  Identities=24%  Similarity=0.469  Sum_probs=99.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .+.+..+++++|++. +.++++++|+|||+||++|+.+.|.|+++++.+.+. +.|++||++++++++++|||+++||++
T Consensus        13 ~~~v~~l~~~~f~~~-~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   91 (504)
T 2b5e_A           13 DSAVVKLATDSFNEY-IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK   91 (504)
T ss_dssp             TSSCEECCTTTHHHH-HTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCcEECCHHHHHHH-HhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            456899999999994 577899999999999999999999999999999885 999999999999999999999999999


Q ss_pred             EEECCeE--EEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEK--KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~--v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+.  +.++.|..+.+.|.+||.+.+
T Consensus        92 ~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           92 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEeCCccccceeecCCCCHHHHHHHHHHhc
Confidence            9999997  889999999999999999876

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.84  E-value=3.6e-21  Score=128.07  Aligned_cols=83  Identities=24%  Similarity=0.446  Sum_probs=78.4

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHH
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS  175 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~  175 (182)
                      .++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|||+++||+++  ||+.  ++.|..+.++|.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            46899999999999999999999999999889999999999999999999999999998  9987  8889999999999


Q ss_pred             HHHHHhC
Q 030165          176 TLDKYVE  182 (182)
Q Consensus       176 ~l~~~l~  182 (182)
                      +|+++|+
T Consensus        79 ~l~~~le   85 (85)
T 1nho_A           79 AINDEME   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHhC
Confidence            9999875

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.84  E-value=1.5e-20  Score=156.85  Aligned_cols=104  Identities=12%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-------HHHHHHHhcC-ceEEEEEeCCCChHHHHHcCC
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-------IEELAKEYAG-KVACFKLNTDDSPNIATKYGI  146 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-------l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I  146 (182)
                      .+.+.++++++|++ +..++++++|+|||+||+ |+.+.|.       ++++++.+.+ ++.+++||++++++++++|+|
T Consensus        10 ~~~v~~l~~~~f~~-~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v   87 (350)
T 1sji_A           10 KDRVVSLTEKNFKQ-VLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGF   87 (350)
T ss_dssp             CCCCEEECHHHHHH-HHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTC
T ss_pred             CCccEECCHHHHHH-HHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCC
Confidence            35688999999998 446689999999999999 9999888       9999999976 499999999999999999999


Q ss_pred             CcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       147 ~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++||+++|++|+ +.++.|..+.+.|.+|+++.+
T Consensus        88 ~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~  121 (350)
T 1sji_A           88 DEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLI  121 (350)
T ss_dssp             CSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTTS
T ss_pred             CccceEEEEECCc-EEEecCCCCHHHHHHHHHHhc
Confidence            9999999999998 568899999999999998765

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.84  E-value=2.9e-22  Score=143.57  Aligned_cols=105  Identities=31%  Similarity=0.683  Sum_probs=94.2

Q ss_pred             CccEEc-ChhhHHHHHHc---CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVIS---SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~~---~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.+.++ +.++|++.+..   ++++++|+||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|.++||
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   92 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMPT   92 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSCC
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccce
Confidence            456667 56889886654   68999999999999999999999999999997 59999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.| .+.++|.++|+++++
T Consensus        93 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           93 FLFIKDGAEADKVVG-ARKDDLQNTIVKHVG  122 (130)
T ss_dssp             CCBCTTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred             EEEEeCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence            999999999999999 588899999998873

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.83  E-value=6.9e-21  Score=126.68  Aligned_cols=83  Identities=30%  Similarity=0.526  Sum_probs=78.0

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      .+++|+||++||++|+.+.|.++++++++++++.++.+|++++++++++|||+++||+++  ||+.  ++.|..+.++|.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence            468999999999999999999999999998889999999999999999999999999998  8987  888988999999


Q ss_pred             HHHHHHh
Q 030165          175 STLDKYV  181 (182)
Q Consensus       175 ~~l~~~l  181 (182)
                      ++|+++|
T Consensus        79 ~~l~~~l   85 (85)
T 1fo5_A           79 EAIKKRL   85 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.83  E-value=5e-21  Score=138.99  Aligned_cols=100  Identities=20%  Similarity=0.475  Sum_probs=87.3

Q ss_pred             EcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeC----CCChHHHHHcCCCcccE
Q 030165           80 VVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNT----DDSPNIATKYGIRSIPT  151 (182)
Q Consensus        80 ~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~----d~~~~l~~~~~I~~iPT  151 (182)
                      ..+.+++...+.. .++++||+||++||++|+.+.|.+   +++++.+++ +.++.+|+    +++.+++++|+|.++||
T Consensus        16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt   94 (134)
T 2fwh_A           16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPT   94 (134)
T ss_dssp             CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred             ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence            3456777765543 489999999999999999999999   999999975 99999999    45678999999999999


Q ss_pred             EEEE-ECCeEE--EEEEcCCCHHHHHHHHHHH
Q 030165          152 VLFF-KNGEKK--ESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       152 l~~f-~~G~~v--~~~~G~~~~~~l~~~l~~~  180 (182)
                      +++| ++|+++  .++.|..+.++|.++|+++
T Consensus        95 ~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             EEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            9999 799988  7899999999999999864

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.83  E-value=3.6e-21  Score=151.54  Aligned_cols=104  Identities=20%  Similarity=0.383  Sum_probs=93.5

Q ss_pred             cCccEEc-ChhhHHHHHHcCC--CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVV-TDSSWENLVISSE--NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l-~~~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.+.++ +.++|.+.+...+  ++|||+||++||++|+.+.|.|++++++|+ .+.|++||++ ++.++.+|+|.++||
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            3567888 8899999776553  899999999999999999999999999996 5999999999 778999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCH-------HHHHHHHHHH
Q 030165          152 VLFFKNGEKKESIIGAVPK-------STLSSTLDKY  180 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~-------~~l~~~l~~~  180 (182)
                      +++|++|+.+.++.|..+.       ++|..+|.++
T Consensus       176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999999999999998775       8899998864

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.83  E-value=3.9e-20  Score=155.65  Aligned_cols=105  Identities=17%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhh------HHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCC
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIA------PAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIR  147 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~------p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~  147 (182)
                      .+.+.+++.++|++.+ .++++++|+||||||++|+...      |.++++++.+.+ .+.|++||++++++++++|||+
T Consensus        12 ~~~v~~lt~~~f~~~i-~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~   90 (367)
T 3us3_A           12 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   90 (367)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC
T ss_pred             CCccEECCHHHHHHHH-hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC
Confidence            4568999999999955 6689999999999999974433      689999999876 4999999999999999999999


Q ss_pred             cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          148 SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       148 ~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++||+++|++|+.+ .+.|..+.+.|.+||.+.+
T Consensus        91 ~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~  123 (367)
T 3us3_A           91 EEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVL  123 (367)
T ss_dssp             STTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred             cCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhc
Confidence            99999999999875 7889999999999998875

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.83  E-value=1.3e-20  Score=150.99  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=91.4

Q ss_pred             cCccEEc-ChhhHHHHHHc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVV-TDSSWENLVIS--SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l-~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.+.++ +.++|...+..  .+++|||+|||+||++|+.+.|.|++++++|++ +.|++||+++ .+++.+|+|.++||
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PT  188 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPT  188 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSE
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCE
Confidence            4577888 78999997764  478999999999999999999999999999986 9999999987 77899999999999


Q ss_pred             EEEEECCeEEEEEEcCC-------CHHHHHHHHHHH
Q 030165          152 VLFFKNGEKKESIIGAV-------PKSTLSSTLDKY  180 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~-------~~~~l~~~l~~~  180 (182)
                      +++|++|+.+.++.|..       +.++|..+|.+.
T Consensus       189 ll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          189 LLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999999999999874       346788888764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.82  E-value=6.9e-21  Score=143.40  Aligned_cols=102  Identities=15%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             EcChhhHHHHH---HcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCChHH-------------
Q 030165           80 VVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSPNI-------------  140 (182)
Q Consensus        80 ~l~~~~~~~~~---~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~~l-------------  140 (182)
                      ..+..+|++.+   ...+++|+|+|||+||++|+.+.+.+   .++.+.+.+++.++.+|+|+..++             
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER  109 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhh
Confidence            34555666543   36799999999999999999985554   666666665799999999988765             


Q ss_pred             -------------HHHcCCCcccEEEEE-ECCeEEEEEEcCCC-HHHHHHHHHHHh
Q 030165          141 -------------ATKYGIRSIPTVLFF-KNGEKKESIIGAVP-KSTLSSTLDKYV  181 (182)
Q Consensus       141 -------------~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~-~~~l~~~l~~~l  181 (182)
                                   +++|+|.++||+++| ++|+++.++.|..+ .++|.++|++.|
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                         899999999999999 79999999999998 999999999876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.82  E-value=4.4e-20  Score=130.72  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=84.4

Q ss_pred             CccEEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCc-c
Q 030165           76 NEVQVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRS-I  149 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~-i  149 (182)
                      +....+ +.++|++.+ +++++++|+|+|.|||+|+++.|.|+++++.  +++.|+++|++++++    ++++|||++ .
T Consensus         6 ~~~~~i~s~e~f~~ii-~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVI-EENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             GCEEECCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             cceeecCCHHHHHHHH-hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            344555 567888844 5599999999999999999999999999985  469999999999977    799999995 9


Q ss_pred             cEEEEEECCeEEEEE-EcCCCHHHHHHHH
Q 030165          150 PTVLFFKNGEKKESI-IGAVPKSTLSSTL  177 (182)
Q Consensus       150 PTl~~f~~G~~v~~~-~G~~~~~~l~~~l  177 (182)
                      ||+++|+||+.+.+. .+..+.+.|.+.+
T Consensus        83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            999999999999874 4778888887765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.82  E-value=6.6e-20  Score=160.90  Aligned_cols=108  Identities=26%  Similarity=0.421  Sum_probs=97.8

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCC--ChHHHHHcCCCcc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDD--SPNIATKYGIRSI  149 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~--~~~l~~~~~I~~i  149 (182)
                      .+.+.++++++|+..+..++++++|+|||+||++|+++.|.|+++++++.+   .+.|++||+++  +.+++++|+|+++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            456899999999998878889999999999999999999999999999987   79999999954  8899999999999


Q ss_pred             cEEEEEE----CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          150 PTVLFFK----NGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       150 PTl~~f~----~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ||+++|+    +|+.+....|..+.++|.++|+++|+
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~  127 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALE  127 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHh
Confidence            9999998    56666777888999999999998874

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.82  E-value=1.8e-20  Score=134.26  Aligned_cols=102  Identities=16%  Similarity=0.274  Sum_probs=87.9

Q ss_pred             ccEEcChhhHHHHHHc-CCCcEEEEEEcC-------CChhhhhhhHHHHHHHHHhcCceEEEEEeC-------CCChHHH
Q 030165           77 EVQVVTDSSWENLVIS-SENPVLVEFWAP-------WCGPCRMIAPAIEELAKEYAGKVACFKLNT-------DDSPNIA  141 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~-~~~~vlV~F~a~-------wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-------d~~~~l~  141 (182)
                      .+...+.++|.+.+.. .+++++|+||++       ||++|+.+.|.|+++++++++++.|+.+|+       +.+.+++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            4566788999987765 689999999999       999999999999999999987899999999       7899999


Q ss_pred             HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          142 TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       142 ~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      ++|+|+++||+++|++|+.+....| .+.+.|.++|++
T Consensus        86 ~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           86 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            9999999999999988665444333 467888888864

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.81  E-value=3.7e-19  Score=129.08  Aligned_cols=103  Identities=17%  Similarity=0.415  Sum_probs=90.9

Q ss_pred             EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC------------------------
Q 030165           79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT------------------------  134 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~------------------------  134 (182)
                      ..++++.+.. ....+++++|+||++||++|+.+.|.++++++++.+++.++.+++                        
T Consensus        15 ~~~~g~~~~~-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (148)
T 2b5x_A           15 AWLNGEVTRE-QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (148)
T ss_dssp             EEESCCCCHH-HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             ccccCcccch-hhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcc
Confidence            5567776665 334679999999999999999999999999999987799999995                        


Q ss_pred             ---CCChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          135 ---DDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       135 ---d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                         |.+.+++++|+|.++|+++++ ++|+.+.++.|..+.+++.++|+++|+
T Consensus        94 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             eEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence               446689999999999999999 799999999999999999999999874

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.81  E-value=1.8e-19  Score=133.94  Aligned_cols=91  Identities=14%  Similarity=0.331  Sum_probs=82.1

Q ss_pred             HcCCCcEEEEEE-cCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh-----------HHHHHcCCCcccEEEEE
Q 030165           91 ISSENPVLVEFW-APWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP-----------NIATKYGIRSIPTVLFF  155 (182)
Q Consensus        91 ~~~~~~vlV~F~-a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~-----------~l~~~~~I~~iPTl~~f  155 (182)
                      ...+++++|+|| ++||++|+.+.|.+   +++.+.+..++.++.+|.++..           +++++|+|.++||+++|
T Consensus        44 ~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           44 KQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             HHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            356899999999 99999999999999   7887777667999999998764           89999999999999999


Q ss_pred             -ECCeEEEEEEcCC--CHHHHHHHHHHHhC
Q 030165          156 -KNGEKKESIIGAV--PKSTLSSTLDKYVE  182 (182)
Q Consensus       156 -~~G~~v~~~~G~~--~~~~l~~~l~~~l~  182 (182)
                       ++|+++.+. |..  +.+++.++|+++++
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence             799999999 998  89999999999874

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.69  E-value=1.7e-21  Score=139.96  Aligned_cols=93  Identities=17%  Similarity=0.390  Sum_probs=84.4

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE--ECCeE--
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFF--KNGEK--  160 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f--~~G~~--  160 (182)
                      ....++++||+||++||++|+.+.|.+   +++++.+.+++.++.+|++  ++.+++++|+|.++||+++|  ++|+.  
T Consensus        15 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           15 AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            456789999999999999999999999   9999998888999999994  66889999999999999999  67998  


Q ss_pred             EEEEEcCCCHHHHHHHHHHHhC
Q 030165          161 KESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +.++.|..+.++|.++|+++++
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCV  116 (130)
Confidence            8899999999999999998763

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.80  E-value=9.9e-20  Score=165.81  Aligned_cols=106  Identities=23%  Similarity=0.328  Sum_probs=92.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+..++.++|++.+ .++++++|+|||+||++|+.+.|.|+++++.+.+.+.+++||++++++++++|+|+++||+++
T Consensus       115 ~~~v~~l~~~~f~~~i-~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  193 (780)
T 3apo_A          115 DPEIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  193 (780)
T ss_dssp             CTTEEECCHHHHHHHH-TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEE
T ss_pred             CcceeeechHhHHhhh-cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEE
Confidence            4578999999999955 789999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+.+.++.|..+.+.|.+||.+.+
T Consensus       194 ~~~g~~~~~~~G~~~~~~l~~~l~~~~  220 (780)
T 3apo_A          194 FRSGMAAVKYNGDRSKESLVAFAMQHV  220 (780)
T ss_dssp             ECTTSCCEECCSCSCHHHHHHHHHTTS
T ss_pred             EeCCcEeeEecCCCCHHHHHHHHHHhc
Confidence            999999899999999999999998765

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.80  E-value=1.5e-19  Score=156.14  Aligned_cols=106  Identities=26%  Similarity=0.576  Sum_probs=97.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      ...+..+++++|++.+...+++++|+|||+||++|+.+.|.++++++.+.+  ++.++++|.+.+ +++.+|+|.++||+
T Consensus       351 ~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~  429 (481)
T 3f8u_A          351 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTI  429 (481)
T ss_dssp             CSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEE
T ss_pred             CCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEE
Confidence            456889999999998877899999999999999999999999999999987  599999999998 88899999999999


Q ss_pred             EEEECCeE--EEEEEcCCCHHHHHHHHHHHh
Q 030165          153 LFFKNGEK--KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~~G~~--v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|++|+.  +.++.|..+.++|.+||++.+
T Consensus       430 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          430 YFSPANKKLNPKKYEGGRELSDFISYLQREA  460 (481)
T ss_dssp             EEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred             EEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence            99988876  788999999999999999865

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.79  E-value=5.6e-19  Score=126.55  Aligned_cols=102  Identities=20%  Similarity=0.479  Sum_probs=86.6

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC---------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD---------------------  136 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~---------------------  136 (182)
                      +..++++.+.. ....+++++|+||++||++|+.+.|.+++++++++ ++.++.++.++                     
T Consensus         9 l~~~~g~~~~l-~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   86 (136)
T 1lu4_A            9 ATTLSGAPFDG-ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (136)
T ss_dssp             EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             eecCCCCeecH-HHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEEC
Confidence            34444444433 22357899999999999999999999999999998 79999999987                     


Q ss_pred             -ChHHHHHcCCCcccEEEEE-ECCeEEEEEE---cCCCHHHHHHHHHHHhC
Q 030165          137 -SPNIATKYGIRSIPTVLFF-KNGEKKESII---GAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       137 -~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~---G~~~~~~l~~~l~~~l~  182 (182)
                       +.+++++|+|.++|+++++ ++|+.+ ++.   |..+.+++.++|+++++
T Consensus        87 ~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll~  136 (136)
T 1lu4_A           87 ADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALTS  136 (136)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC--
T ss_pred             CchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHhC
Confidence             6789999999999999999 699998 999   99999999999999874

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.79  E-value=4.6e-19  Score=138.97  Aligned_cols=101  Identities=15%  Similarity=0.309  Sum_probs=90.2

Q ss_pred             CccEEcChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +.+..+++++|+.+. ..++++ +|+||++||++|+.+.|.+++++++++ ++.++.+|++++++++++|+|.++||+++
T Consensus       118 ~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  195 (229)
T 2ywm_A          118 QRKPQLSEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKIVI  195 (229)
T ss_dssp             TTCCSCCHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE
T ss_pred             CCccCCCHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            456788999999854 455555 889999999999999999999999994 69999999999999999999999999988


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                        ||+ +.++.|..+.++|.++|++++
T Consensus       196 --~G~-~~~~~G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          196 --NKG-VAEFVGAQPENAFLGYIMAVY  219 (229)
T ss_dssp             --GGG-TEEEESCCCHHHHHHHHHHHH
T ss_pred             --CCE-EEEeeCCCCHHHHHHHHHHHh
Confidence              888 678999999999999999875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.79  E-value=8e-19  Score=140.75  Aligned_cols=102  Identities=15%  Similarity=0.258  Sum_probs=91.0

Q ss_pred             ccCccEEcChhhHHHHHHcCCCcEEEEEE--cCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCC-----ChHHHHH
Q 030165           74 AVNEVQVVTDSSWENLVISSENPVLVEFW--APWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDD-----SPNIATK  143 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~--a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~-----~~~l~~~  143 (182)
                      ....+..+++++|++ ++.++++|||+||  ||||+    +.|.|+++++++.   +++.|++||+++     +++++++
T Consensus        14 ~~~~v~~Lt~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~   88 (248)
T 2c0g_A           14 TCTGCVDLDELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDR   88 (248)
T ss_dssp             -CTTCEECCTTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHH
T ss_pred             CCCCcEECCHHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHH
Confidence            346688999999999 6678899999999  99999    9999999999984   479999999998     8999999


Q ss_pred             cCCC--cccEEEEEECCeE--EEEE--EcCCCHHHHHHHHHHHh
Q 030165          144 YGIR--SIPTVLFFKNGEK--KESI--IGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~--~iPTl~~f~~G~~--v~~~--~G~~~~~~l~~~l~~~l  181 (182)
                      |+|+  ++||+++|+ |+.  ..++  .|..+.++|.+||++.+
T Consensus        89 ~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             TTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             hCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence            9999  999999999 873  5667  79999999999999864

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.79  E-value=1.4e-18  Score=124.10  Aligned_cols=102  Identities=19%  Similarity=0.459  Sum_probs=86.9

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC---------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD---------------------  136 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~---------------------  136 (182)
                      +..++++.+.. ....+++++|+||++||++|+.+.|.++++.++++ ++.++.++.++                     
T Consensus        10 ~~~~~g~~~~l-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (136)
T 1zzo_A           10 AKTLDGHDFHG-ESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (136)
T ss_dssp             EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             cccCCCCEeeH-HHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEE
Confidence            44455555543 22357899999999999999999999999999998 79999999854                     


Q ss_pred             --ChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          137 --SPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       137 --~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                        +.+++++|+|.++|+++++ ++|+.+ ++.|..+.+++.++|+++|+
T Consensus        88 d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           88 DTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             cCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence              5778999999999999999 599998 99999999999999999874

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.78  E-value=3.4e-19  Score=148.60  Aligned_cols=104  Identities=24%  Similarity=0.528  Sum_probs=93.7

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc--eEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~--v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      ...+..+++++|+..+...+++++|+|||+||++|+.+.|.++++++.+.++  +.++++|++.+.  +.+|+|+++||+
T Consensus       248 ~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~  325 (361)
T 3uem_A          248 KQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTL  325 (361)
T ss_dssp             TSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEE
T ss_pred             cCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeE
Confidence            3568899999999988788999999999999999999999999999999875  999999999887  688999999999


Q ss_pred             EEEECC--eEEEEEEcCCCHHHHHHHHHHH
Q 030165          153 LFFKNG--EKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       153 ~~f~~G--~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ++|++|  +.+.++.|..+.++|.+||++.
T Consensus       326 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~  355 (361)
T 3uem_A          326 KFFPASADRTVIDYNGERTLDGFKKFLESG  355 (361)
T ss_dssp             EEECSSSSCCCEECCSCSSHHHHHHHHTTT
T ss_pred             EEEECCCCcceeEecCCCCHHHHHHHHHhc
Confidence            999654  6678999999999999999764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.78  E-value=7.2e-19  Score=160.13  Aligned_cols=108  Identities=27%  Similarity=0.463  Sum_probs=99.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ...+.+++.++|.+.+...+++++|+|||+||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|+++||+++
T Consensus       656 ~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~  735 (780)
T 3apo_A          656 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKL  735 (780)
T ss_dssp             CCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEE
Confidence            45688999999988777889999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EECCeEEEEEEc----CCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIG----AVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G----~~~~~~l~~~l~~~l~  182 (182)
                      |++|+.+.++.|    ..+.++|.+||+++++
T Consensus       736 ~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          736 YQYERAKKSIWEEQINSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             EEEETTTTEEEEEEECCCCHHHHHHHHHHHTT
T ss_pred             EcCCCccccccCcccCCcCHHHHHHHHHHHHH
Confidence            999988877777    5799999999999874

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.77  E-value=2.1e-18  Score=137.74  Aligned_cols=100  Identities=21%  Similarity=0.342  Sum_probs=89.8

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEc--CCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCC-----ChHHHHHcCC
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWA--PWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDD-----SPNIATKYGI  146 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a--~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~-----~~~l~~~~~I  146 (182)
                      ..+..+++++|+. ++..+++|||+|||  |||+    +.|.|+++++.+.  +++.|++||+|+     +++++++|+|
T Consensus         5 ~~v~~Lt~~nF~~-~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYK-VIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHH-HGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHH-HHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            4588999999999 44678899999999  9999    9999999999996  469999999654     8999999999


Q ss_pred             C--cccEEEEEECCe--EEEEEEcCCCHHHHHHHHHHH
Q 030165          147 R--SIPTVLFFKNGE--KKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       147 ~--~iPTl~~f~~G~--~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      +  ++||+++|++|+  .+.++.|..+.+.|.+||++.
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence            9  999999999998  467888999999999999875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.77  E-value=2.7e-18  Score=127.11  Aligned_cols=104  Identities=21%  Similarity=0.467  Sum_probs=89.2

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHc------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKY------------  144 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~------------  144 (182)
                      +..++++.+.. ....++++||+||++||++|+.+.|.++++.+++.++ +.++.|+.++..+.+++|            
T Consensus        19 l~~~~g~~~~l-~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3or5_A           19 GVTVDGKPFSS-ASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMM   97 (165)
T ss_dssp             EECTTSCEEEG-GGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEE
T ss_pred             eeCCCCCEech-hHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEe
Confidence            44455554443 2236789999999999999999999999999999875 999999999888777776            


Q ss_pred             ---------------CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          145 ---------------GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       145 ---------------~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                     +|.++|+++++ ++|+++.++.|..+.+++.++|+++|+
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           98 ATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             CCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                           99999999998 699999999999999999999999874

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.77  E-value=4.5e-19  Score=154.20  Aligned_cols=105  Identities=27%  Similarity=0.488  Sum_probs=94.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-C--ceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-G--KVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~--~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.+..+++++|+..+...++++||+|||+||++|+.+.|.++++++.+. +  ++.++++|.+.+... . |+|+++||
T Consensus       357 ~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt  434 (504)
T 2b5e_A          357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPT  434 (504)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSE
T ss_pred             cccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCe
Confidence            35688999999999888889999999999999999999999999999986 2  699999999887654 3 99999999


Q ss_pred             EEEEECCeE--EEEEEcCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEK--KESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~--v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++|++|+.  +.++.|..+.++|.+||++.+
T Consensus       435 ~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~  466 (504)
T 2b5e_A          435 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENG  466 (504)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             EEEEeCCceecceEecCCCCHHHHHHHHHhcC
Confidence            999999976  778889999999999999875

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.77  E-value=6.3e-19  Score=133.50  Aligned_cols=97  Identities=12%  Similarity=0.094  Sum_probs=77.5

Q ss_pred             EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcC---CCcccEEEEE
Q 030165           79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYG---IRSIPTVLFF  155 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~---I~~iPTl~~f  155 (182)
                      ..++++.+..+....+++++|+|||+||++|+++.|.|++++++++ ++.|+.+|.|++++++.+|+   |+++||+++|
T Consensus        39 ~~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~  117 (167)
T 1z6n_A           39 NGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (167)
T ss_dssp             HCCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             cCCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence            3456666655333467899999999999999999999999999886 59999999999999999997   9999999999


Q ss_pred             EC-CeEEEEEEcCCCHHHHHHHHH
Q 030165          156 KN-GEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       156 ~~-G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++ |+++.++ |..+. .+.+.++
T Consensus       118 ~~~G~~~~~~-g~~p~-~~~~~i~  139 (167)
T 1z6n_A          118 DEEFNLLGRF-VERPQ-AVLDGGP  139 (167)
T ss_dssp             CTTCCEEEEE-ESSCH-HHHHHCH
T ss_pred             CCCCCEEEEE-cCCCH-HHHHhHH
Confidence            86 5777776 54543 3444443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.77  E-value=5.7e-18  Score=135.05  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=85.6

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc----CceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA----GKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ...++++.++.+....++.+++.||++||++|+.+.|.+++++.++.    +++.+..+|++++++++++|+|.++||++
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~  201 (243)
T 2hls_A          122 ESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIA  201 (243)
T ss_dssp             CCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEE
Confidence            34456666665333356677999999999999999999999999983    56999999999999999999999999998


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +  ||+.+  +.|..+.++|.++|++.+
T Consensus       202 i--~G~~~--~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          202 I--NGYLV--FVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             E--TTEEE--EESCCCHHHHHHHHHHHH
T ss_pred             E--CCEEE--EeCCCCHHHHHHHHHHHh
Confidence            8  89864  889999999999999876

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.76  E-value=5.2e-18  Score=125.12  Aligned_cols=90  Identities=19%  Similarity=0.355  Sum_probs=80.6

Q ss_pred             CCCcEEEEEEcCCChhhhh-hhHHHHHHHHHhcCc-eEEEEEeC----------------------------CCChH---
Q 030165           93 SENPVLVEFWAPWCGPCRM-IAPAIEELAKEYAGK-VACFKLNT----------------------------DDSPN---  139 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~-~~p~l~~~a~~~~~~-v~~~~vd~----------------------------d~~~~---  139 (182)
                      .++++||+||++||++|+. +.|.+++++++|.++ +.++.|+.                            |....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            5899999999999999999 599999999999865 99999986                            23334   


Q ss_pred             ---HHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          140 ---IATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       140 ---l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                         ++++|+|.++|+++++ ++|+++.++.|..+.+++.++|+++|+
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence               8999999999999999 599999999999999999999999874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.76  E-value=7.9e-18  Score=123.32  Aligned_cols=90  Identities=19%  Similarity=0.530  Sum_probs=82.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------ChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------SPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------~~~l~~~~~I~~i  149 (182)
                      .++++||+||++||++|+.+.|.++++.+++.+ ++.++.|+.++                      +.++++.|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            578999999999999999999999999999976 49999999876                      3578999999999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          150 PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+++++ ++|+++.++.|..+.++|.++|+++++
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKP  138 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHh
Confidence            999999 799999999999999999999999874

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.76  E-value=7.5e-19  Score=130.20  Aligned_cols=105  Identities=18%  Similarity=0.399  Sum_probs=87.6

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEe----------------------
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLN----------------------  133 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd----------------------  133 (182)
                      .+..++++.+.. ....++++||+||++||++|+.+.|.|++++++|. ..+.++.|+                      
T Consensus        22 ~l~~~~g~~~~~-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGG-GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeH-HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            567777777764 33568899999999999999999999999998863 235555554                      


Q ss_pred             ------CCCChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          134 ------TDDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       134 ------~d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                            .|.+.+++++|+|.++||++++ ++|+++.++.|..+.++|.++|+++++
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  4456679999999999999999 799999999999999999999998763

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.76  E-value=2.4e-18  Score=112.51  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=67.5

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSS  175 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~  175 (182)
                      +.|+||++||++|+.+.|.++++++++.+++.++.+|   +.+++++|||+++||+++  ||+.+.+  |.. +.++|.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~   74 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK   74 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence            4689999999999999999999999998889999998   788999999999999988  9988776  887 8999888


Q ss_pred             HH
Q 030165          176 TL  177 (182)
Q Consensus       176 ~l  177 (182)
                      +|
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.76  E-value=7.9e-20  Score=137.52  Aligned_cols=97  Identities=20%  Similarity=0.397  Sum_probs=83.1

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-HHHHcCC--CcccEEEEE-ECCe
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-IATKYGI--RSIPTVLFF-KNGE  159 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-l~~~~~I--~~iPTl~~f-~~G~  159 (182)
                      +.+.. ....++++||+|||+||++|+.+.|.|+++++.+..++.|+.||++++.+ ++.+|++  .++||+++| ++|+
T Consensus        37 ~~~~~-~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           37 DGKKE-AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             HHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCC
Confidence            34444 45678999999999999999999999999887766568889999988877 7888998  669999999 7999


Q ss_pred             EEEEEEcC----------CCHHHHHHHHHHHh
Q 030165          160 KKESIIGA----------VPKSTLSSTLDKYV  181 (182)
Q Consensus       160 ~v~~~~G~----------~~~~~l~~~l~~~l  181 (182)
                      ++.++.|.          .+.++|.++|++++
T Consensus       116 ~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          116 VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            99988885          78999999999876

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.75  E-value=7.8e-19  Score=151.86  Aligned_cols=107  Identities=21%  Similarity=0.383  Sum_probs=87.9

Q ss_pred             cCccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---C-----ceEEEEEeCCCChHHHHHcC
Q 030165           75 VNEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---G-----KVACFKLNTDDSPNIATKYG  145 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~-----~v~~~~vd~d~~~~l~~~~~  145 (182)
                      ...+.++++++|++.+.. .++++||+|||+||++|+.+.|.|+++++++.   +     ++.|++||++++++++++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            456899999999985543 45899999999999999999999999999997   2     59999999999999999999


Q ss_pred             CCcccEEEEEECCeE--EEEEEcC------------CCHHHHHHHHHHHh
Q 030165          146 IRSIPTVLFFKNGEK--KESIIGA------------VPKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~~iPTl~~f~~G~~--v~~~~G~------------~~~~~l~~~l~~~l  181 (182)
                      |+++||+++|++|+.  ..++.|.            .+.++++..++++|
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Li  151 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLV  151 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHH
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            999999999975432  3333443            46667777777665

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.75  E-value=7.4e-18  Score=121.71  Aligned_cols=86  Identities=22%  Similarity=0.541  Sum_probs=79.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC-------------------------ChHHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD-------------------------SPNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~-------------------------~~~l~~~~~I  146 (182)
                      .++++||+||++||++|+.+.|.+++++++++ .++.++.|+.+.                         +..++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            67899999999999999999999999999998 569999999854                         6689999999


Q ss_pred             CcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHH
Q 030165          147 RSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       147 ~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      .++|+++++ ++|+++.++.|..+.++|.++|+
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            999999999 79999999999999999998874

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.75  E-value=1.7e-18  Score=131.86  Aligned_cols=98  Identities=16%  Similarity=0.277  Sum_probs=78.8

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCceEEEEEeCCCChHHHHHc--------CCCcc
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPA-I--EELAKEYAGKVACFKLNTDDSPNIATKY--------GIRSI  149 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-l--~~~a~~~~~~v~~~~vd~d~~~~l~~~~--------~I~~i  149 (182)
                      .+++.|+. +..++++|+|+|||+||++|+.|.+. |  .++++.+.+++.+++||.|+.+++.+.|        ||.++
T Consensus        27 ~~~ea~~~-A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~  105 (173)
T 3ira_A           27 WGEEAFEK-ARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGW  105 (173)
T ss_dssp             SSHHHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCS
T ss_pred             cCHHHHHH-HHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCC
Confidence            34566766 66789999999999999999999993 4  5777877777999999999999999998        99999


Q ss_pred             cEEEEEE-CCeEEEEEEcCC------CHHHHHHHHHHH
Q 030165          150 PTVLFFK-NGEKKESIIGAV------PKSTLSSTLDKY  180 (182)
Q Consensus       150 PTl~~f~-~G~~v~~~~G~~------~~~~l~~~l~~~  180 (182)
                      ||+++|+ +|+.+... +..      +.+.|.++|+++
T Consensus       106 Pt~v~l~~dG~~v~~~-ty~p~~~~~~~~~f~~~L~~v  142 (173)
T 3ira_A          106 PLNIIMTPGKKPFFAG-TYIPKNTRFNQIGMLELVPRI  142 (173)
T ss_dssp             SEEEEECTTSCEEEEE-SSCCSSCBTTBCCHHHHHHHH
T ss_pred             cceeeECCCCCceeee-eeCCCCcCCCCCCHHHHHHHH
Confidence            9999996 89887653 322      334566666654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.75  E-value=7.9e-18  Score=123.60  Aligned_cols=90  Identities=27%  Similarity=0.538  Sum_probs=80.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC------------------------ChHHHHHcC--
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD------------------------SPNIATKYG--  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~------------------------~~~l~~~~~--  145 (182)
                      .++++||+||++||++|+.+.|.|+++++++. .++.++.|++|.                        ..++++.||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            67999999999999999999999999999984 459999999873                        345778899  


Q ss_pred             CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          146 IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       146 I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |.++|+++++ ++|+++.++.|..+.++|.++|+++.+
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            9999998888 699999999999999999999998863

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.74  E-value=1.7e-17  Score=122.25  Aligned_cols=90  Identities=21%  Similarity=0.424  Sum_probs=80.2

Q ss_pred             CCCcEEEEEEcCCChhhhhh-hHHHHHHHHHhcC-ceEEEEEeCC----------------------------CCh----
Q 030165           93 SENPVLVEFWAPWCGPCRMI-APAIEELAKEYAG-KVACFKLNTD----------------------------DSP----  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~-~p~l~~~a~~~~~-~v~~~~vd~d----------------------------~~~----  138 (182)
                      .++++||+||++||++|+.+ .|.|++++++|++ ++.++.|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            57999999999999999996 9999999999984 5999999864                            222    


Q ss_pred             -HHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          139 -NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       139 -~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                       .+++.|+|.++|+++++ ++|+++.++.|..+.++|.++|+++|+
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence             58999999999999998 699999999999999999999999874

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.74  E-value=1.2e-18  Score=122.33  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEECCeEEEEEEcC
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD----DSPNIATKYGIRSIPTVLFFKNGEKKESIIGA  167 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d----~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~  167 (182)
                      ..+++++|+|||+||++|+++.|.|++++++++    ++.++.+    ++++++++|+|+++||+++  +|+.   +.|.
T Consensus        10 ~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~   80 (106)
T 3kp8_A           10 HLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGV   80 (106)
T ss_dssp             HHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESC
T ss_pred             hcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCC
Confidence            345677999999999999999999999987664    3333332    6789999999999999877  8863   8899


Q ss_pred             CCHHHHHHHHH
Q 030165          168 VPKSTLSSTLD  178 (182)
Q Consensus       168 ~~~~~l~~~l~  178 (182)
                      .+.++|.+|+.
T Consensus        81 ~~~~~l~~~~~   91 (106)
T 3kp8_A           81 RSLEALAVASG   91 (106)
T ss_dssp             CCHHHHHHHHT
T ss_pred             CCHHHHHHHhC
Confidence            99999999874

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.74  E-value=1e-17  Score=119.27  Aligned_cols=88  Identities=31%  Similarity=0.591  Sum_probs=80.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC----------------------------CCChHHHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT----------------------------DDSPNIATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~----------------------------d~~~~l~~~~  144 (182)
                      .++++||+||++||++|+.+.+.++++.+++++++.++.++.                            |.+.+++++|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            578999999999999999999999999999888899999953                            4456799999


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      +|.++|+++++ ++|+.+.++.|..+.+++.++|+++
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99999999999 7999999999999999999999875

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.74  E-value=1.5e-18  Score=129.53  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             HHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHH--HhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEE-CCeEEEE
Q 030165           88 NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAK--EYAGKVACFKLNTD-DSPNIATKYGIRSIPTVLFFK-NGEKKES  163 (182)
Q Consensus        88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~--~~~~~v~~~~vd~d-~~~~l~~~~~I~~iPTl~~f~-~G~~v~~  163 (182)
                      +.+..++++|+|+|||+||++|+++.|.+.+..+  .+.+ ..|+.|++| +..+++.+|+|.++||+++|+ +|+++.+
T Consensus        38 ~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~  116 (151)
T 3ph9_A           38 FYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRAD  116 (151)
T ss_dssp             HHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTT
T ss_pred             HHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEE
Confidence            3355679999999999999999999999876422  2221 356666665 455678899999999999998 9999999


Q ss_pred             EEcC-------CCH---HHHHHHHHHHh
Q 030165          164 IIGA-------VPK---STLSSTLDKYV  181 (182)
Q Consensus       164 ~~G~-------~~~---~~l~~~l~~~l  181 (182)
                      ..|.       ...   +++.+.+++.+
T Consensus       117 ~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          117 IAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            9998       444   44555555544

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.74  E-value=2.7e-18  Score=116.70  Aligned_cols=74  Identities=20%  Similarity=0.311  Sum_probs=66.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      |++||++||++|+++.|.|++++.++     +.++|+|++++++++||++ +||+++ +||+.+.   |..++++|.++|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence            78999999999999999999886433     6899999999999999998 999998 8999874   889999999999


Q ss_pred             HHHh
Q 030165          178 DKYV  181 (182)
Q Consensus       178 ~~~l  181 (182)
                      ++++
T Consensus        73 ~~~~   76 (87)
T 1ttz_A           73 DAAP   76 (87)
T ss_dssp             HTCC
T ss_pred             HHHH
Confidence            8765

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.73  E-value=6.2e-18  Score=123.71  Aligned_cols=90  Identities=24%  Similarity=0.603  Sum_probs=82.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCCh-----------------------HHHHHcCCCc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSP-----------------------NIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~-----------------------~l~~~~~I~~  148 (182)
                      .++++||+||++||++|+.+.|.++++.+++.+ ++.++.|+.+...                       ++++.|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            578999999999999999999999999999976 4999999998765                       7899999999


Q ss_pred             ccEEEEEE-CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          149 IPTVLFFK-NGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       149 iPTl~~f~-~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|++++++ +|+++.+..|..+.++|.++|+++++
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  143 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLG  143 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhc
Confidence            99999996 99999999999999999999998863

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.73  E-value=1.1e-17  Score=122.78  Aligned_cols=86  Identities=21%  Similarity=0.493  Sum_probs=79.6

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------------CCChHHHHHcCCC
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT---------------------------DDSPNIATKYGIR  147 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~---------------------------d~~~~l~~~~~I~  147 (182)
                      +++||+||++||++|+.+.|.++++++++  ++.++.|++                           +...+++++|+|.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            89999999999999999999999999999  699999999                           3667789999999


Q ss_pred             cccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          148 SIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       148 ~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+++++ ++|+++.++.|..+.++|.++|+++++
T Consensus       109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence            99998888 699999999999999999999998763

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.73  E-value=8.5e-18  Score=121.98  Aligned_cols=89  Identities=18%  Similarity=0.343  Sum_probs=79.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChH-------------------------HHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN-------------------------IATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~-------------------------l~~~~~I  146 (182)
                      .++++||+||++||++|+.+.|.++++.+++.++ +.++.|+.|+..+                         +++.|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            6789999999999999999999999999999875 9999999998877                         9999999


Q ss_pred             CcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          147 RSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       147 ~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .++|+++++ ++|+++.+..|..+.+++.+.+.+.+
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999999999 69999999988877777777766654

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.72  E-value=2.2e-17  Score=120.85  Aligned_cols=89  Identities=24%  Similarity=0.466  Sum_probs=80.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeC-----------------------CCChHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNT-----------------------DDSPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~-----------------------d~~~~l~~~~~I~~  148 (182)
                      .++++||+||++||++|+.+.|.+++++++++++ +.++.++.                       |.+.++++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            6789999999999999999999999999999864 88887763                       45678999999999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+++++ ++|+.+.++.|..+.++|.++|+++|
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  140 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW  140 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred             cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            9999999 69999999999999999999999987

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.72  E-value=3.6e-17  Score=128.13  Aligned_cols=99  Identities=14%  Similarity=0.220  Sum_probs=86.3

Q ss_pred             hhhHHHHH-HcCCCcEEEEEE-----cCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           83 DSSWENLV-ISSENPVLVEFW-----APWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        83 ~~~~~~~~-~~~~~~vlV~F~-----a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+++.+.+ ....++++|.||     ++||++|+.+.|.++++++++  .+++.++++|++++++++++|||+++||+++
T Consensus         8 ~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   87 (229)
T 2ywm_A            8 RMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVI   87 (229)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEE
Confidence            35566655 356677776666     899999999999999999888  6789999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++|+...++.|..+.+++.+|+.+++
T Consensus        88 ~~~~~~~~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           88 EGDKDYGIRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             ESSSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred             ECCCcccceecCCccHHHHHHHHHHHH
Confidence            998888899999999999999998764

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.72  E-value=9.1e-17  Score=117.45  Aligned_cols=90  Identities=28%  Similarity=0.646  Sum_probs=80.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCCh----------------------HHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP----------------------NIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~----------------------~l~~~~~I~~i  149 (182)
                      .++++||+||++||++|+.+.|.|+++.+++.++ +.++.|+++...                      ++++.|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            5789999999999999999999999999999875 999999998765                      67888999999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCC--HHHHHHHHHHHhC
Q 030165          150 PTVLFF-KNGEKKESIIGAVP--KSTLSSTLDKYVE  182 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~--~~~l~~~l~~~l~  182 (182)
                      |+++++ ++|+++.++.|..+  .++|.++|++++.
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG  142 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence            998888 79999999999754  4899999998763

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.72  E-value=1.4e-17  Score=117.34  Aligned_cols=78  Identities=15%  Similarity=0.221  Sum_probs=71.3

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      .++|++||++||++|+++.+.|+++++++.  +.+.++|++++++++++||++ +|++++|.||+.+  ..|..++++|.
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~  103 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIG  103 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHH
Confidence            367999999999999999999999999875  899999999999999999997 9999999999886  35889999999


Q ss_pred             HHH
Q 030165          175 STL  177 (182)
Q Consensus       175 ~~l  177 (182)
                      +||
T Consensus       104 ~~L  106 (107)
T 2fgx_A          104 AYL  106 (107)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            887

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.72  E-value=4.5e-17  Score=119.66  Aligned_cols=87  Identities=23%  Similarity=0.468  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------------------------ChHHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------------------------SPNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------------------------~~~l~~~~~I  146 (182)
                      .++++||+||++||++|+.+.|.++++.+++.++ +.++.|++|.                         +.++++.|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            5789999999999999999999999999999865 9999999997                         5678999999


Q ss_pred             CcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          147 RSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       147 ~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .++|+++++ ++|+++.+.   .+.+++.++|+++++
T Consensus       108 ~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             CSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHT
T ss_pred             CcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHh
Confidence            999999999 699988876   356789999988763

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.72  E-value=1.4e-17  Score=124.23  Aligned_cols=101  Identities=18%  Similarity=0.423  Sum_probs=82.0

Q ss_pred             cEEc--ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------
Q 030165           78 VQVV--TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT---------------------  134 (182)
Q Consensus        78 v~~l--~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~---------------------  134 (182)
                      +..+  ++..+.......++++||+||++||++|+.+.|.+++++++   ++.++.|+.                     
T Consensus        33 l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~  109 (168)
T 2b1k_A           33 LESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALS  109 (168)
T ss_dssp             EEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred             eecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCcee
Confidence            4445  44444432234789999999999999999999999999876   488888884                     


Q ss_pred             --CCChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 --DDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 --d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                        |.+.+++++|+|.++|+++++ ++|+.+.++.|..+.+++.++|++++
T Consensus       110 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          110 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             EEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             eECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence              456678999999999965555 69999999999999999999998876

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.72  E-value=1.6e-17  Score=120.49  Aligned_cols=87  Identities=26%  Similarity=0.542  Sum_probs=77.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh-cCc-eEEEEEeCCCC-------------------------hHHHHHcC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY-AGK-VACFKLNTDDS-------------------------PNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~-v~~~~vd~d~~-------------------------~~l~~~~~  145 (182)
                      .++++||+||++||++|+.+.|.++++++++ .++ +.++.|++|..                         ..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            5789999999999999999999999999999 664 99999999874                         47899999


Q ss_pred             CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          146 IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       146 I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |.++|+++++ ++|+++.+..   +.+++.++|+++|+
T Consensus       112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            9999999999 6998877764   89999999999874

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.71  E-value=3.8e-17  Score=127.51  Aligned_cols=99  Identities=16%  Similarity=0.275  Sum_probs=84.1

Q ss_pred             ChhhHHHHH-Hc-CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEE
Q 030165           82 TDSSWENLV-IS-SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        82 ~~~~~~~~~-~~-~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~  156 (182)
                      +.+++.+.+ .. .+..++|+||++ ||++|+++.|.++++++. .+++.|+++|+++  +++++++|||+++||+++|+
T Consensus         8 ~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~   86 (226)
T 1a8l_A            8 DKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ   86 (226)
T ss_dssp             HHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc
Confidence            345566645 33 345567999999 999999999999999865 5679999999999  99999999999999999999


Q ss_pred             CCeEE-EEEEcCCCHHHHHHHHHHHh
Q 030165          157 NGEKK-ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 ~G~~v-~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+.. .++.|..+.+++.++++.++
T Consensus        87 ~g~~~~~~~~G~~~~~~l~~~l~~~l  112 (226)
T 1a8l_A           87 DGKDFGVRYFGLPAGHEFAAFLEDIV  112 (226)
T ss_dssp             TTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred             CCceeeEEEeccCcHHHHHHHHHHHH
Confidence            99875 78889999999999988764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.71  E-value=5.9e-17  Score=120.44  Aligned_cols=104  Identities=18%  Similarity=0.380  Sum_probs=85.9

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC------------------C
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD------------------D  136 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d------------------~  136 (182)
                      .-.+..+++..+.. ....++++||+||++||++|+.+.|.|+++.++++ ++.++.|+.|                  +
T Consensus        19 ~~~l~~~~g~~~~l-~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~   96 (165)
T 3ha9_A           19 SFSLTTIDGEVISL-NNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPD   96 (165)
T ss_dssp             CCCEEBTTSCEECG-GGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCC
T ss_pred             CCEeecCCCCEeeH-HHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCC
Confidence            34455566655543 22367999999999999999999999999999998 7999999998                  4


Q ss_pred             Ch----------------------HHHHHcCCCcccEEEEE-ECCeEEEEEEcCC-CHHHHHHHHHHHhC
Q 030165          137 SP----------------------NIATKYGIRSIPTVLFF-KNGEKKESIIGAV-PKSTLSSTLDKYVE  182 (182)
Q Consensus       137 ~~----------------------~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~-~~~~l~~~l~~~l~  182 (182)
                      ..                      ++++.|+|.++|+++++ ++|+++.  .|.. +.+++.+.|+++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A           97 TPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             CHHHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence            43                      78999999999999999 5888877  7888 99999999998863

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.70  E-value=1e-16  Score=121.27  Aligned_cols=89  Identities=21%  Similarity=0.458  Sum_probs=79.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-e------EEEEEeCCC-ChHHHHHc--------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-V------ACFKLNTDD-SPNIATKY--------------------  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v------~~~~vd~d~-~~~l~~~~--------------------  144 (182)
                      .++++||+||++||++|+.+.|.|++++++|.++ +      .|+.|+.|. ..+.+++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            5789999999999999999999999999999765 7      999999998 67766665                    


Q ss_pred             -----CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 -----GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 -----~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                           +|.++|+++++ ++|+++.++.|..+.++|.++|+++|
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                 78999977666 79999999999999999999999987

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.70  E-value=3.9e-17  Score=119.79  Aligned_cols=87  Identities=24%  Similarity=0.536  Sum_probs=76.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~~i  149 (182)
                      .+++++|+||++||++|+.+.|.+++++++  +++.++.++.+                       ...+++++|+|.++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            478999999999999999999999999877  56899988864                       34578899999999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++++ ++|+.+.++.|..+.+++.++|+++|
T Consensus       119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            977666 79999999999999999999998876

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.70  E-value=1.1e-16  Score=117.34  Aligned_cols=89  Identities=25%  Similarity=0.601  Sum_probs=78.8

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS-----------------------PNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~-----------------------~~l~~~~~I~~  148 (182)
                      .++++||+||++||++|+.+.|.++++.+++.+ ++.++.|+.+..                       ..+++.|+|.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            678999999999999999999999999999986 699999999876                       34889999999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCC--CHHHHHHHHHHHh
Q 030165          149 IPTVLFF-KNGEKKESIIGAV--PKSTLSSTLDKYV  181 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l~~~l  181 (182)
                      +|+++++ ++|+++.++.|..  +.+++.++|+++.
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence            9977777 6999999999986  6779999998865

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.67  E-value=4.2e-16  Score=115.28  Aligned_cols=101  Identities=22%  Similarity=0.553  Sum_probs=81.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC-------------------C
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD-------------------S  137 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~-------------------~  137 (182)
                      +..+++..+.. ....++++||+||++||++|+.+.|.+++++++++ .++.++.++.+.                   .
T Consensus        26 l~~~~g~~~~l-~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~  104 (158)
T 3hdc_A           26 LPTLSGENKSL-AQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDAT  104 (158)
T ss_dssp             EECTTSCEEES-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTT
T ss_pred             eEcCCCCEEeh-HHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECch
Confidence            34444444432 22357899999999999999999999999999997 569999999987                   6


Q ss_pred             hHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCC--HHHHHHHHHH
Q 030165          138 PNIATKYGIRSIPTVLFF-KNGEKKESIIGAVP--KSTLSSTLDK  179 (182)
Q Consensus       138 ~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~--~~~l~~~l~~  179 (182)
                      .+++++|+|.++|+++++ ++|+++.++.|..+  .+++.+.+++
T Consensus       105 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          105 GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             SHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             HHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence            789999999999998888 69999999999864  5566666554

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.67  E-value=1e-16  Score=115.99  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=72.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHH---HHHHhcC-ceEEEEEeCCCChHH------------------------HHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEE---LAKEYAG-KVACFKLNTDDSPNI------------------------ATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~---~a~~~~~-~v~~~~vd~d~~~~l------------------------~~~~  144 (182)
                      .++++||+||++||++|+.+.|.+.+   +.+++.+ ++.++.|+.|+..+.                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            57999999999999999999999988   8888864 499999999876654                        3389


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|.++|+++++ ++|+++.   +..+.++++++|++++
T Consensus       106 ~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             CCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            99999999999 5888765   5688999999998765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.3e-16  Score=115.55  Aligned_cols=86  Identities=21%  Similarity=0.503  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCCChh--hhhhhHHHHHHHHHh-cCc-eEEEEEeCCCCh-------------------------HHHHH
Q 030165           93 SENPVLVEFWAPWCGP--CRMIAPAIEELAKEY-AGK-VACFKLNTDDSP-------------------------NIATK  143 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~--C~~~~p~l~~~a~~~-~~~-v~~~~vd~d~~~-------------------------~l~~~  143 (182)
                      .++++||+||++||++  |+.+.|.+.++.++| .++ +.++.|+.|..+                         ++++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            5789999999999999  999999999999999 654 999999998764                         78999


Q ss_pred             cCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          144 YGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+|.++|+++++ ++|+++.+.   .+.+++.+.|+++|
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKN---LRGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHH
Confidence            999999999999 699988776   38899999999887

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.67  E-value=2.3e-16  Score=120.34  Aligned_cols=89  Identities=17%  Similarity=0.322  Sum_probs=77.9

Q ss_pred             CCC-cEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC-----------------------------CChHHH
Q 030165           93 SEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD-----------------------------DSPNIA  141 (182)
Q Consensus        93 ~~~-~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d-----------------------------~~~~l~  141 (182)
                      .++ ++||+||++||++|+.+.|.|+++.++|.++ +.++.|+.|                             .+.+++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA  123 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence            455 5999999999999999999999999999764 999999984                             456789


Q ss_pred             HHcCCCcccEEEEE-ECCeEEEE---------EEcCCCHHHHHHHHHHHh
Q 030165          142 TKYGIRSIPTVLFF-KNGEKKES---------IIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       142 ~~~~I~~iPTl~~f-~~G~~v~~---------~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+|.++|+++++ ++|+++.+         +.|..+.++|.++|++++
T Consensus       124 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          124 KAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHH
Confidence            99999999999999 59999887         457778999999999886

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.67  E-value=2.4e-16  Score=119.20  Aligned_cols=87  Identities=25%  Similarity=0.576  Sum_probs=76.3

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------CCChHHHHHcCCCc
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-----------------------DDSPNIATKYGIRS  148 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~I~~  148 (182)
                      ..++++||+||++||++|+.+.|.|++++++   ++.++.|+.                       |.+..+++.|+|.+
T Consensus        56 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  132 (176)
T 3kh7_A           56 LKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYG  132 (176)
T ss_dssp             GCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCS
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCC
Confidence            3579999999999999999999999999887   488888885                       34456888999999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          149 IPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus       133 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          133 APETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             SCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            9987777 69999999999999999999988876

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.65  E-value=6.4e-16  Score=112.21  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=72.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHH---HHHHhc-CceEEEEEeCCCChH------------------------HHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEE---LAKEYA-GKVACFKLNTDDSPN------------------------IATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~---~a~~~~-~~v~~~~vd~d~~~~------------------------l~~~~  144 (182)
                      .++++||+||++||++|+.+.|.+++   +.+++. .++.++.|+.|...+                        +++.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            46999999999999999999999999   999885 459999999987744                        36789


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +|.++||++++ ++|+++.+..|   .++++++|++
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~e  142 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLAE  142 (142)
T ss_dssp             CCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHHC
T ss_pred             CCCcCCeEEEECCCCcEEecCCC---HHHHHHHHhC
Confidence            99999999999 58999888764   6888888763

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.65  E-value=4.8e-16  Score=114.71  Aligned_cols=84  Identities=17%  Similarity=0.243  Sum_probs=73.4

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChH-----------------------HHHHcCCCc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPN-----------------------IATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~-----------------------l~~~~~I~~  148 (182)
                      .++++||+||++||++|+...|.|++++++|.++ +.++.|+.|...+                       +++.|+|.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            4689999999999999999999999999999765 9999999987764                       889999999


Q ss_pred             ccEEEEE-ECCeEEEEEEcCCCHHHHHHH
Q 030165          149 IPTVLFF-KNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       149 iPTl~~f-~~G~~v~~~~G~~~~~~l~~~  176 (182)
                      +|+++++ ++|+++.++.|..+.++....
T Consensus       114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~  142 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENIKDLDEAIKK  142 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTCSCHHHHHHH
T ss_pred             CceEEEECCCCeEEEecCCHHHHHHHHHH
Confidence            9999999 599999999888776554433

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.65  E-value=7.5e-16  Score=116.99  Aligned_cols=88  Identities=24%  Similarity=0.393  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------------CCChHHHHH
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-----------------------------DDSPNIATK  143 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-----------------------------d~~~~l~~~  143 (182)
                      .++++||+||++||++|+.+.|.++++.++|.+++.++.|+.                             |.+.++++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            579999999999999999999999999999987799999998                             345678999


Q ss_pred             cCCCcccEEEEE-ECCeEEEEEEcC----------CCHHHHHHHHHHHhC
Q 030165          144 YGIRSIPTVLFF-KNGEKKESIIGA----------VPKSTLSSTLDKYVE  182 (182)
Q Consensus       144 ~~I~~iPTl~~f-~~G~~v~~~~G~----------~~~~~l~~~l~~~l~  182 (182)
                      |+|.++|+++++ ++|+++.+  |.          .+.++|.++|+++++
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~--g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             TTCCEESEEEEECTTCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEECCCCcEEEE--EecCCccccccccCHHHHHHHHHHHHc
Confidence            999999999999 68988777  44          368899999998873

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.64  E-value=2.7e-15  Score=113.60  Aligned_cols=90  Identities=22%  Similarity=0.483  Sum_probs=79.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCCC-----hHHHHHcCCC-------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDDS-----PNIATKYGIR-------------------  147 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~~-----~~l~~~~~I~-------------------  147 (182)
                      .++++||+||++||++|+.+.|.++++.+++. .++.++.|+.|..     ..+.+++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            57899999999999999999999999999997 5699999999865     4567777774                   


Q ss_pred             ----cccEEEEE-ECCeEEEEEEcCCC--HHHHHHHHHHHhC
Q 030165          148 ----SIPTVLFF-KNGEKKESIIGAVP--KSTLSSTLDKYVE  182 (182)
Q Consensus       148 ----~iPTl~~f-~~G~~v~~~~G~~~--~~~l~~~l~~~l~  182 (182)
                          ++|+++++ ++|+++.++.|..+  .+++.++|+++++
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence                89999999 69999999999875  7899999999874

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.63  E-value=2.6e-15  Score=125.87  Aligned_cols=89  Identities=19%  Similarity=0.334  Sum_probs=81.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHHc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------------DSPNIATKY  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~  144 (182)
                      .++++||+||++||++|+.+.|.|++++++|.+ ++.++.|+++                           .+.+++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            578999999999999999999999999999976 4999999865                           345789999


Q ss_pred             CCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 GIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 ~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|.++|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999998888 79999999999999999999999886

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.63  E-value=1.7e-15  Score=132.65  Aligned_cols=101  Identities=14%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+....++++.++.+....++..++.||++||++|+++.|.+++++.+++ ++.+.++|.+++++++++|+|.++||+++
T Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i  176 (521)
T 1hyu_A           98 GGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV  176 (521)
T ss_dssp             TTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE
Confidence            34456778888887544456678999999999999999999999999987 69999999999999999999999999977


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                        ||+.+.+  |.++.++|.+++++.
T Consensus       177 --~g~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          177 --NGKEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             --TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred             --CCEEEec--CCCCHHHHHHHHhhc
Confidence              9988755  999999999998653

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.62  E-value=1.3e-15  Score=110.60  Aligned_cols=86  Identities=22%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCC------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDS------------------  137 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~------------------  137 (182)
                      +..++++.+.. ....++++||+||++||++|+.+.|.|+++++++.  .++.++.|++|..                  
T Consensus        13 l~~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIAL-PSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecH-HHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            44455544433 22357899999999999999999999999999998  4799999999864                  


Q ss_pred             ------hHHHHHcCCCcccEEEEEE--CCeEEEEE
Q 030165          138 ------PNIATKYGIRSIPTVLFFK--NGEKKESI  164 (182)
Q Consensus       138 ------~~l~~~~~I~~iPTl~~f~--~G~~v~~~  164 (182)
                            .+++++|+|.++||++++.  +|+++.+.
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence                  4689999999999999996  89887654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.61  E-value=2e-15  Score=110.06  Aligned_cols=73  Identities=21%  Similarity=0.436  Sum_probs=65.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCC------------------------hHHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDS------------------------PNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~------------------------~~l~~~~~I  146 (182)
                      .++++||+||++||++|+.+.|.|+++++++.  +++.++.|++|+.                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            57899999999999999999999999999998  4799999999864                        468899999


Q ss_pred             CcccEEEEEE--CCeEEEEEE
Q 030165          147 RSIPTVLFFK--NGEKKESII  165 (182)
Q Consensus       147 ~~iPTl~~f~--~G~~v~~~~  165 (182)
                      .++||+++++  +|+++.+..
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             CSSSEEEEEETTTCCEEESCH
T ss_pred             CCCCEEEEEECCCCeEEEecc
Confidence            9999999997  898877654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.61  E-value=9.6e-15  Score=108.71  Aligned_cols=89  Identities=11%  Similarity=0.164  Sum_probs=78.3

Q ss_pred             CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhc-----CceEEEEEeCCCC----------------------------h
Q 030165           93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYA-----GKVACFKLNTDDS----------------------------P  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~-----~~v~~~~vd~d~~----------------------------~  138 (182)
                      .++++||+||++||++ |+...|.|+++.+++.     .++.++.|++|..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 9999999999999995     4699999998732                            1


Q ss_pred             HHHHHcCCCccc---------------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          139 NIATKYGIRSIP---------------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       139 ~l~~~~~I~~iP---------------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+++.|||..+|               +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            578899999998               66666 79999999999999999999999887

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.61  E-value=3.9e-15  Score=111.50  Aligned_cols=86  Identities=23%  Similarity=0.437  Sum_probs=70.9

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCC------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDS------------------  137 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~------------------  137 (182)
                      +...++ .+.. ....++++||+||++||++|+.+.|.|++++++|++  ++.++.|++|+.                  
T Consensus        34 l~~~~g-~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3s9f_A           34 LRKQAD-TADM-DSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF  111 (165)
T ss_dssp             EEETTE-EECS-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCT
T ss_pred             eecCCC-cccH-HHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCccccc
Confidence            444554 4432 223579999999999999999999999999999985  699999999887                  


Q ss_pred             ------hHHHHHcCCCcccEEEEEE-C-CeEEEEEE
Q 030165          138 ------PNIATKYGIRSIPTVLFFK-N-GEKKESII  165 (182)
Q Consensus       138 ------~~l~~~~~I~~iPTl~~f~-~-G~~v~~~~  165 (182)
                            .+++++|+|.++||+++++ + |+++.+..
T Consensus       112 ~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          112 ANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred             CchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEeccc
Confidence                  6789999999999999997 4 88877654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.61  E-value=4e-15  Score=109.94  Aligned_cols=90  Identities=13%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcC-----ceEEEEEeCCCCh----------------------------
Q 030165           93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYAG-----KVACFKLNTDDSP----------------------------  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~~-----~v~~~~vd~d~~~----------------------------  138 (182)
                      .++++||+||++||++ |+...|.++++.+++.+     ++.++.|++|...                            
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999999863     7999999987531                            


Q ss_pred             HHHHHcCCCccc---------------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          139 NIATKYGIRSIP---------------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       139 ~l~~~~~I~~iP---------------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++++.|||.++|               +++++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            378899999999               66666 699999999999999999999999874

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.60  E-value=3e-15  Score=117.10  Aligned_cols=104  Identities=19%  Similarity=0.341  Sum_probs=81.3

Q ss_pred             cEEcChhhHHHHHHcCCC-cEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC--------------------
Q 030165           78 VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD--------------------  135 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~-~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d--------------------  135 (182)
                      +..++++.+.. ..-.++ ++||+||++||++|+.+.|.|++++++|.++ +.++.|+.|                    
T Consensus        43 l~~~~G~~v~l-~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~  121 (218)
T 3u5r_E           43 LPDAGGNLFTL-AEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAY  121 (218)
T ss_dssp             EECTTCCEECG-GGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHH
T ss_pred             eECCCCCEEeH-HHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHh
Confidence            34444444332 122456 4999999999999999999999999999865 999999984                    


Q ss_pred             ---------CChHHHHHcCCCcccEEEEE-ECCeEEEEEE---------cCCCHHHHHHHHHHHhC
Q 030165          136 ---------DSPNIATKYGIRSIPTVLFF-KNGEKKESII---------GAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       136 ---------~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~---------G~~~~~~l~~~l~~~l~  182 (182)
                               ...++++.|+|.++|+++++ ++|+++.+..         +..+.++|.+.|+++++
T Consensus       122 ~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          122 GYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             TCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             CCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHc
Confidence                     45679999999999999999 6898875422         23457899999998873

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.60  E-value=4e-15  Score=123.87  Aligned_cols=107  Identities=12%  Similarity=0.203  Sum_probs=94.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CChHHHHHcCCCc--cc
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DSPNIATKYGIRS--IP  150 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~--iP  150 (182)
                      ...+.+++.+++........++++|+||++||++|+.+.+.|+++++++.+++.|+.+|++  +++.+++.|||++  +|
T Consensus       116 ~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P  195 (361)
T 3uem_A          116 LPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECP  195 (361)
T ss_dssp             SCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCS
T ss_pred             CCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCc
Confidence            4568899999999866555677899999999999999999999999999999999999999  6899999999998  99


Q ss_pred             EEEEEECCeEEEEEE---cCCCHHHHHHHHHHHh
Q 030165          151 TVLFFKNGEKKESII---GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~~G~~v~~~~---G~~~~~~l~~~l~~~l  181 (182)
                      +++++++|+...++.   |..+.+.|.+|+++++
T Consensus       196 ~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l  229 (361)
T 3uem_A          196 AVRLITLEEEMTKYKPESEELTAERITEFCHRFL  229 (361)
T ss_dssp             EEEEEECC--CCEECCSSCCCCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCcccccCCCccccCHHHHHHHHHHHh
Confidence            999999876666665   7889999999999876

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.60  E-value=4.8e-15  Score=118.08  Aligned_cols=97  Identities=14%  Similarity=0.275  Sum_probs=84.1

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHh---cCc--eEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPW--CGPCRMIAPAIEELAKEY---AGK--VACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~~a~~~---~~~--v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +.+++.+++..-+++|+|.||++|  |++|+.+.+.++++++.+   .++  +.|+++|.+++++++++|||+++||+++
T Consensus        13 ~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i   92 (243)
T 2hls_A           13 FRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAF   92 (243)
T ss_dssp             HHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEE
Confidence            345666666566789999999999  999999999999999885   333  9999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      | +|  ..++.|..+.+++..+++.++
T Consensus        93 ~-~g--~~~~~G~~~~~~l~~fv~~~l  116 (243)
T 2hls_A           93 L-GG--EVRWTGIPAGEEIRALVEVIM  116 (243)
T ss_dssp             T-TT--TEEEESCCCTTHHHHHHHHHH
T ss_pred             E-CC--ceeEcCCCcHHHHHHHHHHHH
Confidence            9 77  778889888888998887764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.60  E-value=2.4e-15  Score=109.28  Aligned_cols=84  Identities=18%  Similarity=0.308  Sum_probs=71.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCCh--------------------------HHHHHcC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSP--------------------------NIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~--------------------------~l~~~~~  145 (182)
                      .++++||+||++||++|+.+.|.++++.++|.+ ++.++.|+.|...                          ++++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            578999999999999999999999999999974 5999999988543                          4778999


Q ss_pred             CCcccEEEEEE-CCeEEEEEEcCCCHHHHHHHHHH
Q 030165          146 IRSIPTVLFFK-NGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       146 I~~iPTl~~f~-~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      |.++|+++++. +|+++.+.   .+.+++.+.|++
T Consensus       111 v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAAN---VTPEKLTEILKA  142 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC
T ss_pred             CCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHh
Confidence            99999988885 99988764   457788887764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.59  E-value=4.7e-15  Score=107.44  Aligned_cols=72  Identities=24%  Similarity=0.546  Sum_probs=64.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCC------------------------hHHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDS------------------------PNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~------------------------~~l~~~~~I  146 (182)
                      .++++||+||++||++|+.+.|.++++++++.  +++.++.|+.|..                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            57899999999999999999999999999997  4699999999874                        368899999


Q ss_pred             CcccEEEEEE--CCeEEEEE
Q 030165          147 RSIPTVLFFK--NGEKKESI  164 (182)
Q Consensus       147 ~~iPTl~~f~--~G~~v~~~  164 (182)
                      .++||+++++  +|+++.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          107 ESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCeEEecc
Confidence            9999999998  89887664

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.59  E-value=2.4e-15  Score=114.11  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------Ch----HHHHH--
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------SP----NIATK--  143 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~~----~l~~~--  143 (182)
                      +..+++..+.. ..-.++++||+||++||++|+...|.|++++++|.++ +.++.|++|.       ..    +.+++  
T Consensus        34 l~~~~G~~~~l-~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~  112 (181)
T 2p31_A           34 AVNIRGKLVSL-EKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTY  112 (181)
T ss_dssp             EEBTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             eecCCCCEecH-HHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhc
Confidence            44444444332 2235789999999999999999999999999999765 9999998863       22    12333  


Q ss_pred             ----------------------cCCCccc-------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          144 ----------------------YGIRSIP-------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       144 ----------------------~~I~~iP-------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                            |++.++|       +++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus       113 ~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  181 (181)
T 2p31_A          113 SVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR  181 (181)
T ss_dssp             CCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTCC
T ss_pred             CCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHhC
Confidence                                  2345688       55555 799999999999999999999999874

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.58  E-value=2.9e-15  Score=103.90  Aligned_cols=81  Identities=20%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCH
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~  170 (182)
                      ...++|++||++||++|+++.+.|+++++    ++.|..+|++  ++++++++|| .++|++  |.||+.+  ..|..+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~~~   84 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSCCH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCCCH
Confidence            35678999999999999999999987652    3899999999  7899999999 999986  4689875  4566899


Q ss_pred             HHHHHHHHHHhC
Q 030165          171 STLSSTLDKYVE  182 (182)
Q Consensus       171 ~~l~~~l~~~l~  182 (182)
                      ++|.++|+++++
T Consensus        85 ~~l~~~l~~~~~   96 (100)
T 1wjk_A           85 SKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.57  E-value=5e-15  Score=111.01  Aligned_cols=89  Identities=20%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC-------C----ChHHH-------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD-------D----SPNIA-------------------  141 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d-------~----~~~l~-------------------  141 (182)
                      .++++||+||++||++|+ ..|.|+++.+++.++ +.++.|++|       +    ..+.+                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            578999999999999999 999999999999764 999999764       1    11122                   


Q ss_pred             -----------HHcCCCccc------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          142 -----------TKYGIRSIP------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       142 -----------~~~~I~~iP------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                 +.|++.++|      +++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       247899999      66666 799999999999999999999999874

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.57  E-value=5.9e-15  Score=109.85  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcC----ceEEEEEeCCCC----------------------------hH
Q 030165           93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYAG----KVACFKLNTDDS----------------------------PN  139 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~~----~v~~~~vd~d~~----------------------------~~  139 (182)
                      .++++||+||++||++ |+...|.+.++.+++.+    ++.++.|++|..                            .+
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999997 99999999999999873    699999998753                            25


Q ss_pred             HHHHcCC---------------CcccEEEEEECCeEEEEEEcCC--CHHHHHHHHHHHh
Q 030165          140 IATKYGI---------------RSIPTVLFFKNGEKKESIIGAV--PKSTLSSTLDKYV  181 (182)
Q Consensus       140 l~~~~~I---------------~~iPTl~~f~~G~~v~~~~G~~--~~~~l~~~l~~~l  181 (182)
                      +++.||+               .++|+++++++|+++.++.|..  +.+++.+.|+++|
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~ll  172 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL  172 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence            6666664               5789999999999999999988  9999999999875

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.57  E-value=7.7e-15  Score=109.51  Aligned_cols=91  Identities=10%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             HHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEEE-C-CeEEE
Q 030165           90 VISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFFK-N-GEKKE  162 (182)
Q Consensus        90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f~-~-G~~v~  162 (182)
                      +.+.+|+++|+||++||.+|+.|....   .++.+.+..++.++++|.++.  ..+.++|++.++|+++++. + |+++.
T Consensus        38 Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~  117 (153)
T 2dlx_A           38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV  117 (153)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred             HHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEee
Confidence            345799999999999999999998765   566666655789999999763  4588999999999999995 5 77777


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.| +++++|.+.|++++
T Consensus       118 ~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          118 EWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             EESS-CCHHHHHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHHHHHH
Confidence            7756 89999999998876

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.57  E-value=8.8e-15  Score=111.76  Aligned_cols=89  Identities=17%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------Ch----HHH-HH----------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------SP----NIA-TK----------------  143 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~~----~l~-~~----------------  143 (182)
                      .++++||+||++||++|+...|.|+++.++|.++ +.++.|++|+       ..    +.+ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            5789999999999999999999999999999765 9999999873       11    122 22                


Q ss_pred             -------------cCCCccc------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          144 -------------YGIRSIP------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 -------------~~I~~iP------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                   |++.++|      +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  184 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL  184 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                         4788899      65555 79999999999999999999999887

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.57  E-value=1e-14  Score=111.25  Aligned_cols=104  Identities=14%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-hHHH-------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-PNIA-------  141 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~~l~-------  141 (182)
                      +..++++.+.. ..-.++++||+||++||++|+...|.|+++.++|.++ +.++.|++|.       . .++.       
T Consensus        31 l~d~~G~~~~l-~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~  109 (187)
T 3dwv_A           31 VLDADHKPYNL-VQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKF  109 (187)
T ss_dssp             CBBTTSCBCCG-GGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCC
T ss_pred             EEcCCCCEeeH-HHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhcc
Confidence            44444444432 2235799999999999999999999999999999865 9999998762       1 2221       


Q ss_pred             -----------------------------HHcCCCccc---EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          142 -----------------------------TKYGIRSIP---TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       142 -----------------------------~~~~I~~iP---Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                                   ..|++.++|   +++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          110 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             CCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                                         112455677   77777 799999999999999999999999874

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=2.3e-16  Score=116.49  Aligned_cols=88  Identities=18%  Similarity=0.331  Sum_probs=71.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHH-HHHHhc--CceEEEEEeCCCChHHHHHc----------------------C--
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEE-LAKEYA--GKVACFKLNTDDSPNIATKY----------------------G--  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~-~a~~~~--~~v~~~~vd~d~~~~l~~~~----------------------~--  145 (182)
                      .++++||+||++||++|+.+.|.+++ +.+++.  .++.++.|+.|+..+.+++|                      +  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            57899999999999999999999998 888876  46899999988765544333                      3  


Q ss_pred             CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          146 IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +.++|+++++ ++|+++.+..| .+.+++.++|+++.
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~  147 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQIN  147 (159)
Confidence            6779999999 79999988888 56667888887654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.56  E-value=1.2e-14  Score=107.86  Aligned_cols=89  Identities=13%  Similarity=0.233  Sum_probs=72.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------Ch----HH-HHHc---------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------SP----NI-ATKY---------------  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~~----~l-~~~~---------------  144 (182)
                      .++++||+||++||++|+...|.++++.++|.++ +.++.|++|.       ..    +. .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            5789999999999999999999999999999764 9999999863       11    12 1322               


Q ss_pred             --------------C-----CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 --------------G-----IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 --------------~-----I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                    |     |+.+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                          3     4445877777 69999999999999999999999887

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.55  E-value=4.1e-14  Score=105.11  Aligned_cols=85  Identities=14%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CCCc-EEEEEE-cCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCC---------------------CChHHHHHcCCCc
Q 030165           93 SENP-VLVEFW-APWCGPCRMIAPAIEELAKEYAGK-VACFKLNTD---------------------DSPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~-vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d---------------------~~~~l~~~~~I~~  148 (182)
                      .+++ +||+|| ++||++|+...|.|.+++++|.++ +.++.|+.|                     ...++++.|||.+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            4566 999999 999999999999999999999764 999999987                     5667999999999


Q ss_pred             ----ccEEEEE-ECCeEEEEEEcC-CCHHHHHHHH
Q 030165          149 ----IPTVLFF-KNGEKKESIIGA-VPKSTLSSTL  177 (182)
Q Consensus       149 ----iPTl~~f-~~G~~v~~~~G~-~~~~~l~~~l  177 (182)
                          +|+++++ ++|+++..+.|. ...+.+.+.+
T Consensus       107 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il  141 (161)
T 3drn_A          107 FILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL  141 (161)
T ss_dssp             SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred             cCcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence                9998888 599999999994 3444444433

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.55  E-value=1.4e-15  Score=106.93  Aligned_cols=80  Identities=21%  Similarity=0.398  Sum_probs=63.5

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----hHHHHHcCCCcccEEEEEECCeEEEEEEcCC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----PNIATKYGIRSIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~  168 (182)
                      ++++++ ||++||++|+.+.|.|+++..    .+.++.+|.+..     .+++++|||.++||+  |.+|+.+..+.|..
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~----~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~   91 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA----SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVV   91 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC----CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC----CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHH
Confidence            456666 999999999999999988753    356666666665     568999999999999  56999888776655


Q ss_pred             ---CHHHHHHHHHHH
Q 030165          169 ---PKSTLSSTLDKY  180 (182)
Q Consensus       169 ---~~~~l~~~l~~~  180 (182)
                         +.++|.++|+++
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               677888888764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.32  E-value=3.6e-16  Score=112.97  Aligned_cols=73  Identities=27%  Similarity=0.542  Sum_probs=62.8

Q ss_pred             CCC-cEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCCCC-------------------------hHHHHH
Q 030165           93 SEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTDDS-------------------------PNIATK  143 (182)
Q Consensus        93 ~~~-~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~~-------------------------~~l~~~  143 (182)
                      .++ +++|+||++||++|+.+.|.++++++++.   .++.++.|+.|+.                         .+++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            456 99999999999999999999999999983   3588888888765                         368899


Q ss_pred             cCCCcccEEEEEE-CCeEEEEEE
Q 030165          144 YGIRSIPTVLFFK-NGEKKESII  165 (182)
Q Consensus       144 ~~I~~iPTl~~f~-~G~~v~~~~  165 (182)
                      |+|.++|++++++ +|+++.+..
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~  126 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISMNG  126 (143)
Confidence            9999999999996 898887643

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.54  E-value=2.3e-14  Score=106.38  Aligned_cols=90  Identities=14%  Similarity=0.317  Sum_probs=75.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------Ch----HHHH-Hc---------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------SP----NIAT-KY---------------  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~~----~l~~-~~---------------  144 (182)
                      .++++||+||++||++|+...|.++++++++.++ +.++.|++|.       ..    +.++ +|               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            5799999999999999999999999999999865 9999999863       22    2233 33               


Q ss_pred             --------------CC--Cccc---EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          145 --------------GI--RSIP---TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       145 --------------~I--~~iP---Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                    ++  .++|   +++++ ++|+++.++.|..+.+++.++|+++|+
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                          45  6789   66666 799999999999999999999999874

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.53  E-value=2e-15  Score=123.45  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEe---C-CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLN---T-DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd---~-d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                      .+|+|||+||++|++++|.|++++++++    .+++|   . +++++++++|+|+++||+++  ||+   ++.|..+.++
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~---~~~G~~~~~~  270 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYTGVRSLEA  270 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE---EEESCCCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC----EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE---EecCCCCHHH
Confidence            3799999999999999999999986653    33343   2 34789999999999999654  886   3889999999


Q ss_pred             HHHHHH
Q 030165          173 LSSTLD  178 (182)
Q Consensus       173 l~~~l~  178 (182)
                      +.+|++
T Consensus       271 L~~~l~  276 (291)
T 3kp9_A          271 LAVASG  276 (291)
T ss_dssp             HHHHTC
T ss_pred             HHHHHC
Confidence            999875

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.52  E-value=7.8e-15  Score=97.13  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=57.5

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTL  173 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l  173 (182)
                      -++.||++||++|+++.+.++++.+++...+.++.+|.+ +..+++++||++++||+++  ||+.+.  .|.. +.++|
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l   77 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDL   77 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHH
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHh
Confidence            377899999999999999999998877655666666665 5788999999999999977  888653  4433 45544

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.52  E-value=8.1e-14  Score=106.77  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~  145 (182)
                      .++++||+|| ++||++|+...|.|.+++++|.+ ++.++.|+.|.                         ..++++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            4689999999 99999999999999999999986 59999998874                         456889999


Q ss_pred             CC-----cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          146 IR-----SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~-----~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      |.     ++|+++++ ++|+++.++.|..    +.+++.++|++++
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99     99999999 5999999998876    6899999998875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.51  E-value=3.3e-14  Score=107.73  Aligned_cols=89  Identities=20%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------ChH----HHHHc----------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------SPN----IATKY----------------  144 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~~~----l~~~~----------------  144 (182)
                      .++++||+||++||++|+...|.|+++.++|.++ +.++.|++|.       ..+    .++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            5789999999999999999999999999999764 9999998762       111    11221                


Q ss_pred             ---------------C-----CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          145 ---------------G-----IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       145 ---------------~-----I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                     +     |+.+|+++++ ++|+++.++.|..+.++|.++|+++|
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  183 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF  183 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGGC
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHhC
Confidence                           3     3446987777 69999999999999999999988775

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.51  E-value=5.9e-14  Score=106.66  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~  145 (182)
                      .++++||+|| ++||++|+...|.|+++++++.+ ++.++.|+.|.                         +.++++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            4689999999 99999999999999999999875 59999998874                         456889999


Q ss_pred             CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      |.      ++|+++++ ++|+++.++.|..    +.+++.+.|++++
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99      99999999 6999999999875    6888999998765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.50  E-value=7.2e-14  Score=107.19  Aligned_cols=89  Identities=16%  Similarity=0.356  Sum_probs=77.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| ++||++|+...|.|+++++++.+ ++.++.|+.|.                            ..++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            4789999999 99999999999999999999864 49999998874                            457899


Q ss_pred             HcCCC-----cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          143 KYGIR-----SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~-----~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      .|+|.     ++|+++++ ++|+++.++.|..    +.+++.+.|+++.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     99998888 5999999998876    6788999888764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.49  E-value=1.4e-13  Score=107.11  Aligned_cols=90  Identities=9%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C-hHH---HH------HcC---------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S-PNI---AT------KYG---------  145 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~-~~l---~~------~~~---------  145 (182)
                      .++++||+|||+||++|+...|.|++++++|.++ +.++.|++|+       . .++   ++      +|+         
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~  125 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC  125 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence            5789999999999999999999999999999765 9999998861       1 222   22      333         


Q ss_pred             --------------------------------------------CCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          146 --------------------------------------------IRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       146 --------------------------------------------I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                                                                  |+.+|+.+++ ++|+++.++.|..+.+++.+.|+++
T Consensus       126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l  205 (208)
T 2f8a_A          126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL  205 (208)
T ss_dssp             CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence                                                        3334766666 7999999999999999999999998


Q ss_pred             hC
Q 030165          181 VE  182 (182)
Q Consensus       181 l~  182 (182)
                      |+
T Consensus       206 l~  207 (208)
T 2f8a_A          206 LS  207 (208)
T ss_dssp             HC
T ss_pred             hh
Confidence            74

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.48  E-value=9.3e-14  Score=102.48  Aligned_cols=89  Identities=13%  Similarity=0.273  Sum_probs=73.8

Q ss_pred             CCC-cEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-----------------------ChHHHHHcCC
Q 030165           93 SEN-PVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-----------------------SPNIATKYGI  146 (182)
Q Consensus        93 ~~~-~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-----------------------~~~l~~~~~I  146 (182)
                      .++ ++||+|| ++||++|+...|.|.++++++.+ ++.++.|+.|.                       ..++++.|++
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v  113 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  113 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCC
Confidence            355 9999998 99999999999999999999864 59999998864                       6678999999


Q ss_pred             C----ccc--EEEEE-ECCeEEEEEEcCCC----HHHHHHHHHHHh
Q 030165          147 R----SIP--TVLFF-KNGEKKESIIGAVP----KSTLSSTLDKYV  181 (182)
Q Consensus       147 ~----~iP--Tl~~f-~~G~~v~~~~G~~~----~~~l~~~l~~~l  181 (182)
                      .    ++|  +++++ ++|+++.++.|..+    .+++.+.|+++.
T Consensus       114 ~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A          114 FNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             EETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             ccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence            9    999  66666 79999999998763    466777776653

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.47  E-value=5.2e-14  Score=106.43  Aligned_cols=89  Identities=19%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C----hHHHHH-cCCC------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S----PNIATK-YGIR------------  147 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~----~~l~~~-~~I~------------  147 (182)
                      .++++||+||++||++|+...|.|++++++|.++ +.++.|+++.       .    .+.+++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            5789999999999999999999999999999875 9999998764       2    234555 5542            


Q ss_pred             --------------cccE-----EEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          148 --------------SIPT-----VLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       148 --------------~iPT-----l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                    ++|+     +++.++|+++.++.|..+.+++.+.|+++|
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                          2565     555579999999999999888888887766

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=103.98  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC-------C----hHHHHHcCC--------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD-------S----PNIATKYGI--------------  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~-------~----~~l~~~~~I--------------  146 (182)
                      .++++||+||++||++|+...|.|+++.+++.++ +.++.|++|.       .    .+.++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            5789999999999999999999999999999764 9999998763       1    123333332              


Q ss_pred             ----------------------CcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          147 ----------------------RSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       147 ----------------------~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                            +.+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  185 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF  185 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHHC
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHhC
Confidence                                  225777777 79999999999999999999999875

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.45  E-value=1.7e-13  Score=90.93  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcC--CCcccEEEEEECCeEEEEEEcCCCH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----NIATKYG--IRSIPTVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----~l~~~~~--I~~iPTl~~f~~G~~v~~~~G~~~~  170 (182)
                      -++.||++||++|+.+.+.|+++++++.+ +.+..+|+++++    ++.+++|  +.++|++  |.+|+.+.   |   .
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~---~   72 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G---Y   72 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S---S
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C---H
Confidence            37789999999999999999999988765 899999987653    7999999  9999998  44887643   3   3


Q ss_pred             HHHHHHHHHH
Q 030165          171 STLSSTLDKY  180 (182)
Q Consensus       171 ~~l~~~l~~~  180 (182)
                      +++.+++++-
T Consensus        73 ~~l~~~~~~~   82 (85)
T 1ego_A           73 TDFAAWVKEN   82 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6788888764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.43  E-value=1e-12  Score=97.66  Aligned_cols=89  Identities=13%  Similarity=0.212  Sum_probs=75.3

Q ss_pred             CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165           93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~~  148 (182)
                      .++++||+||++| |++|+...|.++++++++ .++.++.|+.|.                       ..++++.|++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            4789999999999 999999999999999999 679999998863                       346788999987


Q ss_pred             ------ccEEEEE-ECCeEEEEEEcCC-----CHHHHHHHHHHHhC
Q 030165          149 ------IPTVLFF-KNGEKKESIIGAV-----PKSTLSSTLDKYVE  182 (182)
Q Consensus       149 ------iPTl~~f-~~G~~v~~~~G~~-----~~~~l~~~l~~~l~  182 (182)
                            +|+++++ ++|+++.++.|..     +.+++.+.|+++++
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~llk  167 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALVK  167 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHHC
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhhC
Confidence                  4988888 5999999987642     34889999998874

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.41  E-value=6.2e-13  Score=99.85  Aligned_cols=83  Identities=22%  Similarity=0.328  Sum_probs=69.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      ..+++|+.||++||++|+.+.|.++++.+++++ +.++..+.                                      
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            467889999999999999999999999998875 77666653                                      


Q ss_pred             -------------------------------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 -------------------------------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 -------------------------------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                                     +++.+++.++||.++||+++  ||+   .+.|..+.+.|.++|++.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                           22334678899999999987  885   6679999999999999876

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.41  E-value=2.1e-12  Score=96.17  Aligned_cols=90  Identities=14%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhcC---ceEEEEEeCCC---Ch-------------------------HH
Q 030165           93 SENPVLVEFWAPWCG-PCRMIAPAIEELAKEYAG---KVACFKLNTDD---SP-------------------------NI  140 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~---~~-------------------------~l  140 (182)
                      .++++||+||++||+ +|+...+.+.++.+++..   ++.++.|+.|.   ..                         ++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 999999999999998875   39999999872   11                         12


Q ss_pred             HHH----------------cCCCcccEEEEE-ECCeEEEEEEcCC--CHHHHHHHHHHHhC
Q 030165          141 ATK----------------YGIRSIPTVLFF-KNGEKKESIIGAV--PKSTLSSTLDKYVE  182 (182)
Q Consensus       141 ~~~----------------~~I~~iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l~~~l~  182 (182)
                      .+.                |++..+|+++++ ++|+++.++.|..  +.+++.+.|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            222                346678987777 6999999999986  48999999999874

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.41  E-value=1.3e-12  Score=100.64  Aligned_cols=89  Identities=10%  Similarity=0.223  Sum_probs=76.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| ++||++|+...|.|.+++++|.+ ++.++.|+.|.                            ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            4689999999 99999999999999999999975 59999998864                            356889


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCCC----HHHHHHHHHHHh
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAVP----KSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~~----~~~l~~~l~~~l  181 (182)
                      .|+|.      ++|+++++ ++|+++.+..|..+    .+++.+.|+++.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99999      99998888 69999999888654    588888888764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.39  E-value=1.9e-12  Score=98.68  Aligned_cols=89  Identities=16%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| ++||++|+...|.|.+++++|. .++.++.|+.|.                            ..++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            4789999999 9999999999999999999986 358999998863                            346889


Q ss_pred             HcCCC-----cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          143 KYGIR-----SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~-----~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      .||+.     .+|+++++ ++|+++....|..    +.+++.+.|+++.
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99999     99999999 6999999988854    3678888887764

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.38  E-value=7e-13  Score=103.60  Aligned_cols=82  Identities=21%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      .++++|+.||++||++|+++.|.++++.+.   ++.++.+..                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            467899999999999999999999998753   355554432                                      


Q ss_pred             ------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 ------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 ------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                            +++.+++++|||+++||+ ++.||+   .+.|..+.++|.++|++.+
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence                  123457889999999999 566885   5679999999999998764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.38  E-value=3.2e-12  Score=99.65  Aligned_cols=89  Identities=15%  Similarity=0.283  Sum_probs=75.9

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| ++||++|+...|.|.+++++|. .++.++.|+.|.                            ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            4689999999 9999999999999999999986 458999988764                            346889


Q ss_pred             HcCCC-----cccEEEEE-ECCeEEEEEEcCCC----HHHHHHHHHHHh
Q 030165          143 KYGIR-----SIPTVLFF-KNGEKKESIIGAVP----KSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~-----~iPTl~~f-~~G~~v~~~~G~~~----~~~l~~~l~~~l  181 (182)
                      .|||.     .+|+++++ ++|+++.+..|..+    .+++.+.|++++
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     89988888 59999999887643    788988888764

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.37  E-value=2.1e-12  Score=99.45  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhc----CceEEEEEeCCCC----------------------------hH
Q 030165           93 SENPVLVEFWAPWCGP-CRMIAPAIEELAKEYA----GKVACFKLNTDDS----------------------------PN  139 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~----------------------------~~  139 (182)
                      .++++||+||++||++ |+...|.|.++.+++.    +++.++.|++|..                            ..
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999998 9999999999877764    4689999988731                            24


Q ss_pred             HHHHcCCC-ccc---------------EEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          140 IATKYGIR-SIP---------------TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       140 l~~~~~I~-~iP---------------Tl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++.|||. ++|               +++++ ++|+++..+.|..+.+++.+.|+++|
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            77889987 454               54555 79999999999888888888887765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.37  E-value=2.3e-12  Score=100.94  Aligned_cols=89  Identities=13%  Similarity=0.266  Sum_probs=76.4

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| ++||++|+...+.|++++++|.+ ++.++.|+.|.                            ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            4689999999 99999999999999999999863 59999998763                            346899


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      .||+.      .+|+++++ ++|+++.+..|..    +.+++.+.|++++
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            99999      99999999 6999999888864    4588888888764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.33  E-value=4.7e-12  Score=95.36  Aligned_cols=86  Identities=12%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----------------------ChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPW-CGPCRMIAPAIEELAKEYAGKVACFKLNTDD----------------------SPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----------------------~~~l~~~~~I~~i  149 (182)
                      .++++||+||+.| |++|+...|.|.++.++  .++.++.|+.|.                      ..++++.|+|..+
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            4789999999999 99999999999999988  569999998872                      3468899999887


Q ss_pred             ---------cEEEEE-ECCeEEEEEEc--CCCHHHHHHHHHHH
Q 030165          150 ---------PTVLFF-KNGEKKESIIG--AVPKSTLSSTLDKY  180 (182)
Q Consensus       150 ---------PTl~~f-~~G~~v~~~~G--~~~~~~l~~~l~~~  180 (182)
                               |+++++ ++|+++..+.|  ..+..++.++|+.+
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l  163 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAAL  163 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHH
Confidence                     877777 69999998874  33455677766654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.31  E-value=1.6e-11  Score=96.20  Aligned_cols=87  Identities=18%  Similarity=0.310  Sum_probs=72.0

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+||+ .||++|+...|.|++++++|.++ +.++.|+.|.                            ..++++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            57899999997 99999999999999999999754 9999998874                            235788


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCCC----HHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAVP----KSTLSSTLDK  179 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~~----~~~l~~~l~~  179 (182)
                      .|+|.      .+|+++++ ++|+++..+.|..+    .+++.+.|+.
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            89998      89998888 59999999888643    4556655554

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.31  E-value=1.8e-11  Score=90.33  Aligned_cols=78  Identities=17%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC---------------------CChHHHHHcCCCccc--
Q 030165           95 NPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD---------------------DSPNIATKYGIRSIP--  150 (182)
Q Consensus        95 ~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d---------------------~~~~l~~~~~I~~iP--  150 (182)
                      +++||+|| +.||++|+...|.|.++.+++.++..++.|+.|                     .+.++++.||+..+|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            47899987 999999999999999999998753377777764                     334588889999999  


Q ss_pred             -----EEEEEECCeEEEEEEcCCCHHHH
Q 030165          151 -----TVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus       151 -----Tl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                           ++++ ++|+++..+.|..+..+.
T Consensus       116 g~~~~~~li-~~G~i~~~~~g~~~~~~~  142 (159)
T 2a4v_A          116 GSIRSHFIF-VDGKLKFKRVKISPEVSV  142 (159)
T ss_dssp             CBCCEEEEE-ETTEEEEEEESCCHHHHH
T ss_pred             CccceEEEE-cCCEEEEEEccCCccccH
Confidence                 6777 999999999997655433

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.29  E-value=3.2e-12  Score=99.59  Aligned_cols=81  Identities=20%  Similarity=0.370  Sum_probs=64.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-------------------------------------  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-------------------------------------  135 (182)
                      .++++|+.||++||++|+++.|.++++.+.   ++.+..+...                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            467899999999999999999999997652   2555543221                                     


Q ss_pred             -------CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          136 -------DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       136 -------~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                             ++.++++++||+++||+++ .||+   ++.|..+.++|.++|++.
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                   2345788999999999988 7886   567999999999999864

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.28  E-value=6.4e-12  Score=95.80  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=72.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD------------------------------------  136 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~------------------------------------  136 (182)
                      .++++|+.||++||++|+.+.|.++++.+++++++.|..+...-                                    
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            56789999999999999999999999999998888887666520                                    


Q ss_pred             -------------------------------------ChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          137 -------------------------------------SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       137 -------------------------------------~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                                           +..++.++||.++||+++  ||+......|..+.++|.+.|+.
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                 012456789999999988  99876555589999999999998


Q ss_pred             Hh
Q 030165          180 YV  181 (182)
Q Consensus       180 ~l  181 (182)
                      ++
T Consensus       182 l~  183 (192)
T 3h93_A          182 LI  183 (192)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.28  E-value=2.5e-11  Score=89.62  Aligned_cols=89  Identities=7%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCCc-
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIRS-  148 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~-  148 (182)
                      .++++||+||+ .||++|+...|.|.++.++|.+ .+.++.|+.|.                     ..++++.||+.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            46799999998 9999999999999999999864 38888888762                     335778899987 


Q ss_pred             -----------ccEEEEE-ECCeEEEEEEcCCC---HHHHHHHHHHHh
Q 030165          149 -----------IPTVLFF-KNGEKKESIIGAVP---KSTLSSTLDKYV  181 (182)
Q Consensus       149 -----------iPTl~~f-~~G~~v~~~~G~~~---~~~l~~~l~~~l  181 (182)
                                 +|+++++ ++|+++..+.|...   .+++.+.|+++.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHHC
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHHh
Confidence                       9999888 59999888866443   356666666654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.27  E-value=6.3e-12  Score=82.70  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT---KYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~---~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ++.||++||++|+.+.+.|++.      .+.+..+|+++++++.+   ++|+.++|++  +.+|+.   +.| .+.+++.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g-~~~~~l~   70 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSG-FRPDMIN   70 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EES-CCHHHHG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---Eec-CCHHHHH
Confidence            6789999999999999999864      37888999998876554   5999999998  348864   334 6788888


Q ss_pred             HHHHHHh
Q 030165          175 STLDKYV  181 (182)
Q Consensus       175 ~~l~~~l  181 (182)
                      ++|++++
T Consensus        71 ~~l~~~~   77 (81)
T 1h75_A           71 RLHPAPH   77 (81)
T ss_dssp             GGSCCC-
T ss_pred             HHHhccc
Confidence            7776543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.26  E-value=4.8e-11  Score=93.44  Aligned_cols=89  Identities=12%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC--------C---hHHHH------HcCCC-------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD--------S---PNIAT------KYGIR-------  147 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~--------~---~~l~~------~~~I~-------  147 (182)
                      .+++|||+|||+||++|+ ..|.|+++.++|.+ .+.++.|++++        .   .+.++      +|++.       
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~  133 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG  133 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence            578999999999999999 88999999999965 48999998652        1   22344      55442       


Q ss_pred             ---------------------------------------cc---cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          148 ---------------------------------------SI---PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       148 ---------------------------------------~i---PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                                                             .+   |+.+++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus       134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK  211 (215)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred             ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                                   01   565555 799999999999999999999999873

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=99.26  E-value=1.8e-11  Score=97.18  Aligned_cols=86  Identities=16%  Similarity=0.339  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-------------------------------------  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-------------------------------------  135 (182)
                      ..+.+|+.||++||++|+++.+.++++.+.  +++.+..++.-                                     
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~  173 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  173 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence            345689999999999999999999988765  46777765541                                     


Q ss_pred             -------------CChHHHHHcCCCcccEEEEEE-CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          136 -------------DSPNIATKYGIRSIPTVLFFK-NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       136 -------------~~~~l~~~~~I~~iPTl~~f~-~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                   ++.++++++||+++||+++.+ +|+. ..+.|..+.++|.++|++.+
T Consensus       174 ~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          174 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence                         123467889999999999987 5754 67889999999999988754

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.23  E-value=1.6e-11  Score=93.78  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d  135 (182)
                      .++++||.||++||++|+.+.|.++++.+++++++.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4678999999999999999999999999999888999988875

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.21  E-value=5.7e-11  Score=76.61  Aligned_cols=69  Identities=16%  Similarity=0.262  Sum_probs=55.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT---KYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~---~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ++.||++||++|+.+.+.+++.      .+.+..+|+++++++.+   ++++.++|++++  +|+.   +.| .+++++.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g-~~~~~l~   70 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSG-FRPERIK   70 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EES-CCHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcC-CCHHHHH
Confidence            6789999999999999999875      37888899998877665   899999999974  7763   445 5778888


Q ss_pred             HHHH
Q 030165          175 STLD  178 (182)
Q Consensus       175 ~~l~  178 (182)
                      ++|+
T Consensus        71 ~~l~   74 (75)
T 1r7h_A           71 QLQA   74 (75)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.20  E-value=1.4e-10  Score=90.25  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC--------C---hHHHH------HcCCC-------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD--------S---PNIAT------KYGIR-------  147 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~--------~---~~l~~------~~~I~-------  147 (182)
                      .+++|||+|||+||++| ...|.|.++.++|.+ .+.++.|++++        .   .+.++      +|++.       
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~  115 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG  115 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence            57899999999999999 678999999999975 38999998642        1   12344      55432       


Q ss_pred             -------------------------c--------------c---cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          148 -------------------------S--------------I---PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       148 -------------------------~--------------i---PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                                               +              +   ||.+++ ++|+++.++.|..+++++.+.|+++|
T Consensus       116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll  192 (207)
T 2r37_A          116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM  192 (207)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                     0              1   565666 69999999999999999999999886

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.18  E-value=1.6e-10  Score=90.63  Aligned_cols=89  Identities=13%  Similarity=0.287  Sum_probs=72.5

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| +.||++|+...|.|.++.++|. .++.++.|+.|.                            ..++++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            4789999999 9999999999999999999885 358888887653                            124677


Q ss_pred             HcCC-----CcccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHHh
Q 030165          143 KYGI-----RSIPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I-----~~iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~l  181 (182)
                      .||+     ..+|+++++ ++|+++....|.    .+.+++.+.|+++.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8888     478999888 599999988874    35788888888764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.17  E-value=2.4e-10  Score=86.91  Aligned_cols=89  Identities=10%  Similarity=0.073  Sum_probs=71.6

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC-------------------------hHHHHHcC
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS-------------------------PNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~-------------------------~~l~~~~~  145 (182)
                      .++++||+||+ .||++|+...|.|.++.+++.+ ++.++.|+.|..                         .++++.||
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            46899999995 9999999999999999998863 588888877532                         23667778


Q ss_pred             CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      +.      .+|+++++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            76      37998888 4999999988865    4788888888764

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.15  E-value=8.1e-10  Score=86.51  Aligned_cols=109  Identities=10%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             ccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCC--cc
Q 030165           74 AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIR--SI  149 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~--~i  149 (182)
                      ....+.+++.+++..........+++.|..+||..|..+.+.|+++++++.+++.|+.+|.++  ...+++.||+.  .+
T Consensus       111 ~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~  190 (227)
T 4f9z_D          111 SLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQL  190 (227)
T ss_dssp             CCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGC
T ss_pred             CCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccC
Confidence            346688999999998543333445566778999999999999999999999999999999974  66788999998  89


Q ss_pred             cEEEEEECC-eEEEEE-EcCCCHHHHHHHHHHHhC
Q 030165          150 PTVLFFKNG-EKKESI-IGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       150 PTl~~f~~G-~~v~~~-~G~~~~~~l~~~l~~~l~  182 (182)
                      |+++++..+ ...... .|..+.+.|.+|++.+++
T Consensus       191 P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          191 PALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             SEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            999999733 222333 367899999999999874

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.15  E-value=2.3e-10  Score=86.45  Aligned_cols=103  Identities=5%  Similarity=0.029  Sum_probs=74.3

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------  136 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------  136 (182)
                      +...+++.+.. ..-.++++||+|| +.||++|....|.|+++.++|.+ .+.++.|+.|.                   
T Consensus        36 l~~~~G~~v~l-~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~  114 (179)
T 3ixr_A           36 LMLSGSTCKTL-SDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVS  114 (179)
T ss_dssp             EEEGGGEEECG-GGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEE
T ss_pred             EECCCCCEEeH-HHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEE
Confidence            44444443332 2224679999998 99999999999999999999975 38888887753                   


Q ss_pred             --ChHHHHHcCCCc------------ccEEEEE-ECCeEEEEEEcCCC---HHHHHHHHHHHh
Q 030165          137 --SPNIATKYGIRS------------IPTVLFF-KNGEKKESIIGAVP---KSTLSSTLDKYV  181 (182)
Q Consensus       137 --~~~l~~~~~I~~------------iPTl~~f-~~G~~v~~~~G~~~---~~~l~~~l~~~l  181 (182)
                        ..++++.|++..            +|+++++ ++|+++..+.+...   .+++.+.|+++.
T Consensus       115 D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          115 DSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             CTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH
T ss_pred             CCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence              335778888864            5878888 59999988866443   456666666654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.14  E-value=3.6e-10  Score=87.84  Aligned_cols=89  Identities=10%  Similarity=0.237  Sum_probs=72.2

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| +.||++|+...|.|.++.++|.. ++.++.|+.|.                            ..++++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            4689999999 99999999999999999999864 58888887642                            124677


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      .||+.      .+|+++++ ++|+++....|..    +.+++.+.|+.+.
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            88884      69999888 5999999887753    5678888887764

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.14  E-value=1.8e-10  Score=85.97  Aligned_cols=87  Identities=10%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCC-
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIR-  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~-  147 (182)
                      .++++||+|| +.||++|+...|.|.++.+++ .++.++.|+.|.                       ..++ +.||+. 
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~  123 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLI  123 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBB
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEe
Confidence            4689999999 899999999999999999888 678888887643                       2335 566664 


Q ss_pred             --------cccEEEEEE-CCeEEEEEEc-----CCCHHHHHHHHHHHh
Q 030165          148 --------SIPTVLFFK-NGEKKESIIG-----AVPKSTLSSTLDKYV  181 (182)
Q Consensus       148 --------~iPTl~~f~-~G~~v~~~~G-----~~~~~~l~~~l~~~l  181 (182)
                              .+|+++++. +|+++..+.|     ..+.+++.+.|+++|
T Consensus       124 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll  171 (171)
T 2yzh_A          124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI  171 (171)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred             cccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence                    269888884 9999998875     345688999988875

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.12  E-value=2.6e-10  Score=85.43  Aligned_cols=89  Identities=11%  Similarity=0.172  Sum_probs=70.4

Q ss_pred             CCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhc---CceEEEEEeCCC--C-----------------------------
Q 030165           93 SENPVLVEFWAPWCG-PCRMIAPAIEELAKEYA---GKVACFKLNTDD--S-----------------------------  137 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~--~-----------------------------  137 (182)
                      .++++||+||+.||+ .|....+.+.++.+++.   .++.++.|.+|.  .                             
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            378999999999997 69999999999999995   458888887651  1                             


Q ss_pred             hHHHHHcCC---------CcccEEEEE-ECCeEEEEEEcC-CCHHHHHHHHHHHh
Q 030165          138 PNIATKYGI---------RSIPTVLFF-KNGEKKESIIGA-VPKSTLSSTLDKYV  181 (182)
Q Consensus       138 ~~l~~~~~I---------~~iPTl~~f-~~G~~v~~~~G~-~~~~~l~~~l~~~l  181 (182)
                      .++++.||+         ...|+++++ ++|+++..+.|. .+.+++.+.|++++
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~  161 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLAR  161 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            135555554         345777777 599999888886 67999999998875

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.12  E-value=2.1e-11  Score=84.07  Aligned_cols=78  Identities=19%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-------hHHHHHcCCCcccEEEEEECCeEEEEEE---c
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-------PNIATKYGIRSIPTVLFFKNGEKKESII---G  166 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-------~~l~~~~~I~~iPTl~~f~~G~~v~~~~---G  166 (182)
                      .++.||++||++|+++.+.|+++...+++   +..+|++.+       ..+.+.+|+.++|++  |.+|+.+....   +
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~   87 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLES   87 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHH
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHH
Confidence            36779999999999999999987655432   555666654       357888999999997  45887654321   1


Q ss_pred             CCCHHHHHHHHHH
Q 030165          167 AVPKSTLSSTLDK  179 (182)
Q Consensus       167 ~~~~~~l~~~l~~  179 (182)
                      .....+|.++|+.
T Consensus        88 ~~~~g~L~~~l~~  100 (105)
T 1kte_A           88 MHKRGELLTRLQQ  100 (105)
T ss_dssp             HHHHTHHHHHHHH
T ss_pred             HHHCCcHHHHHHH
Confidence            1124556666553

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.12  E-value=2.6e-10  Score=91.18  Aligned_cols=89  Identities=12%  Similarity=0.163  Sum_probs=73.9

Q ss_pred             CCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030165           93 SENP-VLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIATK  143 (182)
Q Consensus        93 ~~~~-vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~~~  143 (182)
                      .++. ||++||++||++|....+.|.+++++|.+ ++.++.|++|.                           ..++++.
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            3564 56788999999999999999999999874 49999998864                           3468899


Q ss_pred             cCCC-------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          144 YGIR-------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~-------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      ||+.       ++|+++++ ++|+++....|..    +.+++.+.|+.+.
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            9997       89988888 5999999888765    5788998888764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.12  E-value=4e-10  Score=83.53  Aligned_cols=86  Identities=7%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCC-
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIR-  147 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~-  147 (182)
                      .++++||+||+ .||++|+...|.|.++.+++ .++.++.|+.|                       ...++++.||+. 
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  119 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence            46899999995 99999999999999999888 66888888764                       234567778876 


Q ss_pred             ---c--ccEEEEE-ECCeEEEEEEcCC-----CHHHHHHHHHH
Q 030165          148 ---S--IPTVLFF-KNGEKKESIIGAV-----PKSTLSSTLDK  179 (182)
Q Consensus       148 ---~--iPTl~~f-~~G~~v~~~~G~~-----~~~~l~~~l~~  179 (182)
                         +  .|+++++ ++|+++..+.|..     +.+++.+.|++
T Consensus       120 ~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence               3  3888888 5999999998742     23677777765

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.09  E-value=1.4e-11  Score=86.93  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-------HHHHHcCCCcccEEEEEECCeEEEEEEc-
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-------NIATKYGIRSIPTVLFFKNGEKKESIIG-  166 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-------~l~~~~~I~~iPTl~~f~~G~~v~~~~G-  166 (182)
                      ...++.||++||++|+++.+.|+++...+ ++  +..+|+++++       ++.+.+|+.++|++++  ||+.+....+ 
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~   92 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIGGYSDL   92 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEESHHHH
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEeCcHHH
Confidence            34577899999999999999998754222 11  7788887764       6888999999998743  8876543221 


Q ss_pred             --CCCHHHHHHHHHH
Q 030165          167 --AVPKSTLSSTLDK  179 (182)
Q Consensus       167 --~~~~~~l~~~l~~  179 (182)
                        ....++|.++|+.
T Consensus        93 ~~~~~~~~L~~~L~~  107 (114)
T 2hze_A           93 LEIDNMDALGDILSS  107 (114)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHCChHHHHHHH
Confidence              1123456666653

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.08  E-value=8.2e-11  Score=87.18  Aligned_cols=88  Identities=13%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCC--
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIR--  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~--  147 (182)
                      .++++||.|| +.||++|+...|.|.++.+++.. .+.++.|+.|.                     +.++++.|||.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            5789999999 99999999999999988888764 47888887653                     33577788874  


Q ss_pred             ---------cccEEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHHH
Q 030165          148 ---------SIPTVLFF-KNGEKKESIIGA-----VPKSTLSSTLDKY  180 (182)
Q Consensus       148 ---------~iPTl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~~  180 (182)
                               ..|+++++ ++|+++....|.     .+.+++.+.|+.+
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                     46777666 699988877653     3467788887654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=83.65  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC---hH----HHHHcCCCcccEEEEE
Q 030165           83 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---PN----IATKYGIRSIPTVLFF  155 (182)
Q Consensus        83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~---~~----l~~~~~I~~iPTl~~f  155 (182)
                      .+.+.+.+ ..+ .+ +.|+++||++|+++.+.|+++.      +.+..+|++..   ++    +.+.+|+.++|+++  
T Consensus        17 ~~~~~~~i-~~~-~v-vvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--   85 (130)
T 2cq9_A           17 VNQIQETI-SDN-CV-VIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--   85 (130)
T ss_dssp             HHHHHHHH-HHS-SE-EEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--
T ss_pred             HHHHHHHH-cCC-cE-EEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--
Confidence            34455533 333 34 4499999999999999998863      45666777765   33    78899999999984  


Q ss_pred             ECCeEEEEE---EcCCCHHHHHHHHHH
Q 030165          156 KNGEKKESI---IGAVPKSTLSSTLDK  179 (182)
Q Consensus       156 ~~G~~v~~~---~G~~~~~~l~~~l~~  179 (182)
                      .||+.+...   .+.....+|.++|++
T Consensus        86 i~G~~igg~~~l~~~~~~~~L~~~L~~  112 (130)
T 2cq9_A           86 VNGTFIGGATDTHRLHKEGKLLPLVHQ  112 (130)
T ss_dssp             ETTEEEEEHHHHHHHHHHTSSHHHHHH
T ss_pred             ECCEEEcChHHHHHHHHcCcHHHHHHH
Confidence            488765542   122334456666654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.07  E-value=9.1e-10  Score=86.75  Aligned_cols=76  Identities=20%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             CCCcEEEEEE-cCCChhhh-hhhHHHHHHHHHhcC-ce-EEEEEeCCC----------------------ChHHHHHcCC
Q 030165           93 SENPVLVEFW-APWCGPCR-MIAPAIEELAKEYAG-KV-ACFKLNTDD----------------------SPNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~-~~~p~l~~~a~~~~~-~v-~~~~vd~d~----------------------~~~l~~~~~I  146 (182)
                      .++++||+|| +.||++|+ ...|.|.++++++.+ .+ .++.|+.|.                      +.++++.||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            4689999999 99999999 999999999988863 48 888888753                      2247778888


Q ss_pred             C-----------cccEEEEEECCeEEEEEEcCC
Q 030165          147 R-----------SIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       147 ~-----------~iPTl~~f~~G~~v~~~~G~~  168 (182)
                      .           .+|+.+++++|+++....|..
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~  144 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPN  144 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEECCS
T ss_pred             eeecccccCcccceeEEEEEECCEEEEEEEecc
Confidence            6           357655559999999998864

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=99.05  E-value=2.8e-10  Score=84.10  Aligned_cols=80  Identities=20%  Similarity=0.447  Sum_probs=64.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      ..+.+|+.|+.++|++|+++.+.++++     ++++++..+.                                      
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~   87 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG   87 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence            467889999999999999999998765     3566665432                                      


Q ss_pred             --------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 --------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 --------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                              +++.++++++||+++||+++ .||+   .+.|..+.++|.++|++.+
T Consensus        88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence                    01235788999999999998 7886   5789999999999998865

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.05  E-value=1.1e-09  Score=83.88  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh----------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP----------------------------------  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~----------------------------------  138 (182)
                      .++++||.||+.||++|+.+.|.++++.+++++++.|..++++...                                  
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~~~lf~a~~~~  102 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQ  102 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCCCCcccHHHHHHHHHHHHcCchhHHhHHHHHHHHHHHh
Confidence            3578999999999999999999999999999888888877763110                                  


Q ss_pred             ------------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165          139 ------------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus       139 ------------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~  176 (182)
                                                                .+++++||+++||+++  ||+...  .|. +.++|.+.
T Consensus       103 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~vv--ng~~~~--~~~-~~e~l~~~  177 (193)
T 3hz8_A          103 KIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGVPTVIV--GGKYKV--EFA-DWESGMNT  177 (193)
T ss_dssp             CCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEEE--CCS-SHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEE--CCEEEe--cCC-CHHHHHHH
Confidence                                                      1345578999999987  887543  244 99999999


Q ss_pred             HHHHh
Q 030165          177 LDKYV  181 (182)
Q Consensus       177 l~~~l  181 (182)
                      |+.++
T Consensus       178 i~~ll  182 (193)
T 3hz8_A          178 IDLLA  182 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.05  E-value=6.7e-10  Score=82.57  Aligned_cols=85  Identities=9%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC----------------------C-ChHHHHHcCCCc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD----------------------D-SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d----------------------~-~~~l~~~~~I~~  148 (182)
                      .++++||+|| +.||++|+...|.|.++.+++ .++.++.|+.|                      . ...+++.||+..
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  120 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  120 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCcee
Confidence            4689999999 899999999999999999998 66888887653                      2 345778888864


Q ss_pred             ---------ccEEEEE-ECCeEEEEEEcC--CCHHHHHHHHH
Q 030165          149 ---------IPTVLFF-KNGEKKESIIGA--VPKSTLSSTLD  178 (182)
Q Consensus       149 ---------iPTl~~f-~~G~~v~~~~G~--~~~~~l~~~l~  178 (182)
                               +|+++++ ++|+++..+.|.  .+..++.+.++
T Consensus       121 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~  162 (165)
T 1q98_A          121 QTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA  162 (165)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred             cccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence                     5998888 599999998752  33444555444

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.04  E-value=1.2e-09  Score=81.00  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CCCcEEEEEE-cCCChhhh-hhhHHHHHHHHHhc-CceE-EEEEeCCC-----------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCR-MIAPAIEELAKEYA-GKVA-CFKLNTDD-----------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~-~~~p~l~~~a~~~~-~~v~-~~~vd~d~-----------------------~~~l~~~~~  145 (182)
                      .++++||.|| +.||++|. ...|.|.++++++. .++. ++.|+.|.                       +.++++.||
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  113 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG  113 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence            4689999999 89999999 89999999998885 3577 88776642                       235778888


Q ss_pred             CC-----------cccEEEEEECCeEEEEEEcC
Q 030165          146 IR-----------SIPTVLFFKNGEKKESIIGA  167 (182)
Q Consensus       146 I~-----------~iPTl~~f~~G~~v~~~~G~  167 (182)
                      +.           .+|+.+++++|+++....|.
T Consensus       114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            86           27988888899999888886

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.03  E-value=1e-09  Score=83.74  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CCC-cEEEEEEcCCChhhhh-hhHHHHHHHHHhcC-ceE-EEEEeCCC-----------------------ChHHHHHcC
Q 030165           93 SEN-PVLVEFWAPWCGPCRM-IAPAIEELAKEYAG-KVA-CFKLNTDD-----------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~-~vlV~F~a~wC~~C~~-~~p~l~~~a~~~~~-~v~-~~~vd~d~-----------------------~~~l~~~~~  145 (182)
                      .++ .||++||+.||++|+. ..|.|.+++++|.+ .+. ++.|+.|.                       +.++++.||
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  134 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIG  134 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcC
Confidence            355 4566677999999999 79999999999864 377 88888753                       234777888


Q ss_pred             CC-----------cccEEEEEECCeEEEEEEcCC----CHHHHHHHHHH
Q 030165          146 IR-----------SIPTVLFFKNGEKKESIIGAV----PKSTLSSTLDK  179 (182)
Q Consensus       146 I~-----------~iPTl~~f~~G~~v~~~~G~~----~~~~l~~~l~~  179 (182)
                      +.           ..|+.+++++|+++....|..    +.+..++.|++
T Consensus       135 v~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~  183 (184)
T 3uma_A          135 MEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL  183 (184)
T ss_dssp             CEEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred             CceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence            85           346666669999999888753    34566666654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.03  E-value=6.7e-10  Score=83.25  Aligned_cols=88  Identities=18%  Similarity=0.291  Sum_probs=71.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--C---------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--S---------------------------------  137 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~---------------------------------  137 (182)
                      .++++||.|+.-.|++|+.+.+.+.++.+++.+++.+..+...-  .                                 
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999998877777654310  0                                 


Q ss_pred             ----------------------------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          138 ----------------------------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       138 ----------------------------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                                                              .++++++||+++||+++  ||+.+....|..+.+++.+.|
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHH
Confidence                                                    02567799999999987  998655555678899999999


Q ss_pred             HHHhC
Q 030165          178 DKYVE  182 (182)
Q Consensus       178 ~~~l~  182 (182)
                      +.||+
T Consensus       178 ~~Ll~  182 (184)
T 4dvc_A          178 NYLLT  182 (184)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98874

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.02  E-value=2.7e-09  Score=84.57  Aligned_cols=88  Identities=10%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFWA-PWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+||+ .||++|....|.|.+++++|.+ .+.++.|+.|.                            ..++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            47899999999 9999999999999999999974 48888887753                            235778


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      .+|+++++ ++|+++....+..    +.+++.+.|+.+
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            89987      68998888 5999988877643    456777777654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.02  E-value=2.3e-10  Score=84.39  Aligned_cols=86  Identities=16%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             hhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC---h----HHHHHcCCCcccEEEEE
Q 030165           83 DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---P----NIATKYGIRSIPTVLFF  155 (182)
Q Consensus        83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~---~----~l~~~~~I~~iPTl~~f  155 (182)
                      .+.+++.+ ..+ .|+ .||++||++|+++.+.|+++.      +.+..+|++..   +    ++.+.+|+.++|+++  
T Consensus        39 ~~~~~~~i-~~~-~Vv-vf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--  107 (146)
T 2ht9_A           39 VNQIQETI-SDN-CVV-IFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--  107 (146)
T ss_dssp             HHHHHHHH-HHC-SEE-EEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--
T ss_pred             HHHHHHHh-cCC-CEE-EEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--
Confidence            34555544 333 344 499999999999999998763      44556666654   3    378899999999984  


Q ss_pred             ECCeEEEEE---EcCCCHHHHHHHHHH
Q 030165          156 KNGEKKESI---IGAVPKSTLSSTLDK  179 (182)
Q Consensus       156 ~~G~~v~~~---~G~~~~~~l~~~l~~  179 (182)
                      .||+.+...   .+.....+|.++|++
T Consensus       108 i~G~~igG~d~l~~l~~~g~L~~~L~~  134 (146)
T 2ht9_A          108 VNGTFIGGATDTHRLHKEGKLLPLVHQ  134 (146)
T ss_dssp             ETTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred             ECCEEEeCchHHHHHHHcChHHHHHHH
Confidence            488765422   122234456666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.02  E-value=5.7e-10  Score=84.90  Aligned_cols=85  Identities=21%  Similarity=0.304  Sum_probs=67.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD------------------------------------  136 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~------------------------------------  136 (182)
                      .++++|+.||.+||++|+.+.|.++++.+++++++.+..+.+.-                                    
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~  100 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKI  100 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCC
Confidence            46788999999999999999999999999998777777665420                                    


Q ss_pred             ------------------C--------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          137 ------------------S--------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       137 ------------------~--------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                                        +                    ..++.++||.++||+++  ||+.+  +.|..+.++|.+.|+
T Consensus       101 ~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~~l~~~i~  176 (195)
T 2znm_A          101 RLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKYR--VIFNNGFDGGVHTIK  176 (195)
T ss_dssp             CTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEE--ECCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEEE--EcCCCCHHHHHHHHH
Confidence                              0                    12456789999999655  88753  467788899999988


Q ss_pred             HHh
Q 030165          179 KYV  181 (182)
Q Consensus       179 ~~l  181 (182)
                      +++
T Consensus       177 ~~l  179 (195)
T 2znm_A          177 ELV  179 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.98  E-value=1e-09  Score=81.54  Aligned_cols=85  Identities=11%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC----------------------C-ChHHHHHcCCCc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD----------------------D-SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d----------------------~-~~~l~~~~~I~~  148 (182)
                      .+++++|+|| +.||++|+...|.|+++.++  .++.++.|+.|                      . ..++++.||+..
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  122 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM  122 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence            4789999999 78999999999999998877  45778877664                      2 345677788875


Q ss_pred             ------ccEEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHH
Q 030165          149 ------IPTVLFF-KNGEKKESIIGA-----VPKSTLSSTLDK  179 (182)
Q Consensus       149 ------iPTl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~  179 (182)
                            +|+++++ ++|+++..+.+.     .+.+++.+.|++
T Consensus       123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                  8998888 599998886643     245667776664

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.97  E-value=4.2e-10  Score=84.08  Aligned_cols=90  Identities=10%  Similarity=0.213  Sum_probs=68.5

Q ss_pred             cCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCC-
Q 030165           92 SSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------SPNIATKYGIR-  147 (182)
Q Consensus        92 ~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~-  147 (182)
                      ..++++|+.|| +.||++|+...|.|.++.+++.+ .+.++.|+.|.                     +.++++.|||. 
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~  110 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  110 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence            46788888888 99999999999999888888864 47888887643                     33577888884 


Q ss_pred             ---------cccEEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHHHh
Q 030165          148 ---------SIPTVLFF-KNGEKKESIIGA-----VPKSTLSSTLDKYV  181 (182)
Q Consensus       148 ---------~iPTl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~~l  181 (182)
                               ..|+++++ ++|+++..+.+.     .+.+++.+.|++++
T Consensus       111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A          111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                     36777777 699988877654     24677777777764

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.96  E-value=1.1e-09  Score=83.55  Aligned_cols=42  Identities=19%  Similarity=0.522  Sum_probs=37.1

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCC
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTD  135 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d  135 (182)
                      .+++||+||+.||++|+.+.|.+   +++.++++++++|+.++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence            46899999999999999999987   6888888888999988874

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.96  E-value=3.9e-09  Score=78.95  Aligned_cols=81  Identities=22%  Similarity=0.254  Sum_probs=64.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCCC----------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY--AGKVACFKLNTDD----------------------------------  136 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~--~~~v~~~~vd~d~----------------------------------  136 (182)
                      ..+.+|+.|+..||++|+.+.+.++++.++|  .++++++..+..-                                  
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~  105 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  105 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcC
Confidence            3566899999999999999999999999998  7778877765421                                  


Q ss_pred             --------------------------------ChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          137 --------------------------------SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       137 --------------------------------~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                                                      +.++++++||.++||+++  ||+   .+.|..+.++|.+.|+
T Consensus       106 ~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~---~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          106 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIE  174 (175)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHT
T ss_pred             hhhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE---EccCCCCHHHHHHHhc
Confidence                                            012356789999999766  887   4579999999988875

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.95  E-value=9.7e-09  Score=76.97  Aligned_cols=104  Identities=13%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhc---CceEEEEEeCCC---ChH----HHHHcC-
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCG-PCRMIAPAIEELAKEYA---GKVACFKLNTDD---SPN----IATKYG-  145 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~---~~~----l~~~~~-  145 (182)
                      +...+++.+.. ..-.++++||+||.+||+ .|....+.+.++.+.+.   .++.++.|.+|.   .++    .+++|+ 
T Consensus        17 L~d~~G~~v~l-~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~   95 (170)
T 4hde_A           17 FTNQDGKPFGT-KDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTE   95 (170)
T ss_dssp             EECTTSCEEEH-HHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCS
T ss_pred             EECCCCCEEeH-HHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCC
Confidence            34444544433 223589999999999996 79999999888887764   358888887762   222    122222 


Q ss_pred             -----------------------------------CCcccEEEEE-ECCeEEEEEEcCC--CHHHHHHHHHHHhC
Q 030165          146 -----------------------------------IRSIPTVLFF-KNGEKKESIIGAV--PKSTLSSTLDKYVE  182 (182)
Q Consensus       146 -----------------------------------I~~iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l~~~l~  182 (182)
                                                         +...|+++++ ++|+.+..+.|..  +.+++.+-|+++++
T Consensus        96 ~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~Lle  170 (170)
T 4hde_A           96 DTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLAE  170 (170)
T ss_dssp             CCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHHHC
T ss_pred             CCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHHhC
Confidence                                               2234677777 6999999998753  56889999998875

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.94  E-value=2.1e-09  Score=81.92  Aligned_cols=85  Identities=24%  Similarity=0.329  Sum_probs=67.5

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC------------------C----h-------------
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD------------------S----P-------------  138 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~------------------~----~-------------  138 (182)
                      ++++||+|++.||++|+++.|.++++.+++  ++.|..+++.-                  .    .             
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~   99 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMG   99 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999988  35665555410                  0    0             


Q ss_pred             -------------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHH
Q 030165          139 -------------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS  175 (182)
Q Consensus       139 -------------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~  175 (182)
                                                                 ++++++||+++||+++  ||+.+....|..+.++|.+
T Consensus       100 ~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~  177 (185)
T 3feu_A          100 EGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIAD  177 (185)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHH
Confidence                                                       1345578899999987  8986554579999999999


Q ss_pred             HHHHHhC
Q 030165          176 TLDKYVE  182 (182)
Q Consensus       176 ~l~~~l~  182 (182)
                      .|+.+++
T Consensus       178 ~i~~ll~  184 (185)
T 3feu_A          178 TIRYLLE  184 (185)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999874

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.94  E-value=6.1e-09  Score=78.91  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=65.9

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-------------------------------------
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-------------------------------------  136 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-------------------------------------  136 (182)
                      .+.+|+.||..||++|+.+.+.+.++.+++++++.+..+....                                     
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~a~~~a~~~~~~~~~~~~lf~~~~~~~~~  104 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAIHEKGSV  104 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhccc
Confidence            4568999999999999999999999999998788887665410                                     


Q ss_pred             -----Ch----------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          137 -----SP----------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       137 -----~~----------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                           ..                                  .++.++||.++||+++  ||+.+  ..|. +.++|.+.|
T Consensus       105 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~-~~~~l~~~i  179 (193)
T 2rem_A          105 PIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVV--NGRYM--VTGH-DFEDTLRIT  179 (193)
T ss_dssp             CSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEE--TTTEE--ECCS-SHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEE--ecCC-CHHHHHHHH
Confidence                 00                                  2456689999999655  88754  3576 999999999


Q ss_pred             HHHh
Q 030165          178 DKYV  181 (182)
Q Consensus       178 ~~~l  181 (182)
                      ++++
T Consensus       180 ~~~~  183 (193)
T 2rem_A          180 DYLV  183 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.94  E-value=7.6e-09  Score=77.51  Aligned_cols=76  Identities=11%  Similarity=0.037  Sum_probs=59.1

Q ss_pred             CCCcEEEEEE-cCCChhhhh-hhHHHHHHHHHhcC-ce-EEEEEeCCC-----------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRM-IAPAIEELAKEYAG-KV-ACFKLNTDD-----------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~-~~p~l~~~a~~~~~-~v-~~~~vd~d~-----------------------~~~l~~~~~  145 (182)
                      .++++||.|| +.||++|+. ..|.|.++++++.+ .+ .++.|+.|.                       ..++++.||
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g  109 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD  109 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence            4678888876 999999999 99999999988853 48 888887643                       234677788


Q ss_pred             CCcc-----------cEEEEEECCeEEEEEEcCC
Q 030165          146 IRSI-----------PTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       146 I~~i-----------PTl~~f~~G~~v~~~~G~~  168 (182)
                      +...           |+.+++++|+++....+..
T Consensus       110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~~  143 (167)
T 2wfc_A          110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEPD  143 (167)
T ss_dssp             CEECCHHHHSSCEECCEEEEEETTEEEEEEECTT
T ss_pred             CccccccccCcccceEEEEEEeCCEEEEEEecCC
Confidence            8654           8665559999999888753

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.94  E-value=3.4e-09  Score=81.65  Aligned_cols=86  Identities=13%  Similarity=0.228  Sum_probs=66.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCC-
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIR-  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~-  147 (182)
                      .++++||+|| +.||++|+...|.|.++.++| .++.++.|+.|.                       ..++++.||+. 
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~  155 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAI  155 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCcee
Confidence            5789999999 789999999999999999999 568888887642                       34577888886 


Q ss_pred             --------cccEEEEE-ECCeEEEEEEcC--CCHHHHHHHHHH
Q 030165          148 --------SIPTVLFF-KNGEKKESIIGA--VPKSTLSSTLDK  179 (182)
Q Consensus       148 --------~iPTl~~f-~~G~~v~~~~G~--~~~~~l~~~l~~  179 (182)
                              .+|+++++ ++|+++....+.  ....++.+.|+.
T Consensus       156 ~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~  198 (200)
T 3zrd_A          156 TEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAA  198 (200)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHH
T ss_pred             ecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHh
Confidence                    36998888 599999887754  233445555543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.92  E-value=6.4e-09  Score=83.26  Aligned_cols=88  Identities=10%  Similarity=0.246  Sum_probs=69.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| +.||++|....|.|.+++++|.+ .+.++.|+.|.                            ..++++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            4789999999 99999999999999999999974 48888887753                            235778


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      .+|+++++ ++|+++....+..    +.+++.+.|+.+
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            88885      58988888 5999998887633    456777776654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.89  E-value=4.9e-09  Score=78.75  Aligned_cols=73  Identities=11%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCChhhhhh-hHHHHHHHHHhcC-ceE-EEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165           95 NPVLVEFWAPWCGPCRMI-APAIEELAKEYAG-KVA-CFKLNTDD-----------------------SPNIATKYGIRS  148 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~-~p~l~~~a~~~~~-~v~-~~~vd~d~-----------------------~~~l~~~~~I~~  148 (182)
                      +.||+.||+.||++|+.. .|.|.++++++.+ .+. ++.|+.|.                       ..++++.||+..
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~  124 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT  124 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCcc
Confidence            477889999999999998 9999999988853 477 88887753                       224666777753


Q ss_pred             -----------cc-EEEEEECCeEEEEEEcCC
Q 030165          149 -----------IP-TVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       149 -----------iP-Tl~~f~~G~~v~~~~G~~  168 (182)
                                 .| |+++. +|+++..+.|..
T Consensus       125 ~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~  155 (171)
T 2pwj_A          125 DLSAGLLGIRSERWSAYVV-DGKVKALNVEES  155 (171)
T ss_dssp             ECTTTTCCEEECCEEEEEE-TTEEEEEEECSS
T ss_pred             ccccccCCcccceeEEEEE-CCEEEEEEeecC
Confidence                       34 55555 999999888864

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.87  E-value=4.2e-09  Score=70.71  Aligned_cols=69  Identities=14%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----CC----hHHHHHcCCCcccEEEEEECCeEEEEEEcCC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----DS----PNIATKYGIRSIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----~~----~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~  168 (182)
                      ++.|+++||++|++....|+++.      +.+-.+|++     +.    +++.+.+++.++|++++  +|+.   +.| .
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G-~   81 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLG-Y   81 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EES-C
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeC-C
Confidence            66799999999999999988763      344455555     23    56778899999999987  7743   345 5


Q ss_pred             CHHHHHHHHH
Q 030165          169 PKSTLSSTLD  178 (182)
Q Consensus       169 ~~~~l~~~l~  178 (182)
                      +++++.++|+
T Consensus        82 ~~~~l~~~l~   91 (92)
T 3ic4_A           82 NEEKLKELIR   91 (92)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHhc
Confidence            8999999885

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.87  E-value=1.3e-08  Score=76.88  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             CCCcEE-EEEEcCCChhhh-hhhHHHHHHHHHhcCc-eEEEE-EeCCC-----------------------ChHHHHHcC
Q 030165           93 SENPVL-VEFWAPWCGPCR-MIAPAIEELAKEYAGK-VACFK-LNTDD-----------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vl-V~F~a~wC~~C~-~~~p~l~~~a~~~~~~-v~~~~-vd~d~-----------------------~~~l~~~~~  145 (182)
                      .++++| ++||+.||++|+ ...|.|.+++++|.++ +.++. +..|.                       ..++++.||
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  121 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD  121 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhC
Confidence            456555 455699999999 5889999999998653 67765 66542                       335788888


Q ss_pred             CC-------------cccEEEEEECCeEEEEEEcCC----CHHHHHHHHHH
Q 030165          146 IR-------------SIPTVLFFKNGEKKESIIGAV----PKSTLSSTLDK  179 (182)
Q Consensus       146 I~-------------~iPTl~~f~~G~~v~~~~G~~----~~~~l~~~l~~  179 (182)
                      +.             ..|+.+++++|++.....+..    +.++..+.|++
T Consensus       122 v~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~  172 (173)
T 3mng_A          122 LLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ  172 (173)
T ss_dssp             CBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred             CCcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence            85             459878888999999888754    35556666654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.85  E-value=4.2e-09  Score=74.66  Aligned_cols=60  Identities=18%  Similarity=0.365  Sum_probs=47.0

Q ss_pred             EEEEEcCCChhhhhh-hHHHHHHHHHhcCceEEEEEeCCCCh-------HHHHHcCCCcccEEEEEECCeEEE
Q 030165           98 LVEFWAPWCGPCRMI-APAIEELAKEYAGKVACFKLNTDDSP-------NIATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        98 lV~F~a~wC~~C~~~-~p~l~~~a~~~~~~v~~~~vd~d~~~-------~l~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      ++.|+++||++|+.+ .+.|++...   .++.+..+|++.++       ++.+.+|+.++|++  |.+|+.+.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ig   94 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHIG   94 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEEEE
Confidence            666999999999999 888876541   23778888887664       58889999999987  55897643

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.82  E-value=8.3e-09  Score=68.94  Aligned_cols=56  Identities=11%  Similarity=0.298  Sum_probs=46.2

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--CChHHHHHc-CCCcccEEEEEECCeE
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--DSPNIATKY-GIRSIPTVLFFKNGEK  160 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--~~~~l~~~~-~I~~iPTl~~f~~G~~  160 (182)
                      .++.|+++||++|+.+.+.|++..      +.+..+|++  ..+++.+.+ ++.++|+++  .||+.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~   65 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYH   65 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEE
Confidence            477899999999999999998752      677888888  556788889 999999984  48864

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.81  E-value=9e-08  Score=68.55  Aligned_cols=94  Identities=13%  Similarity=0.217  Sum_probs=76.1

Q ss_pred             cEEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           78 VQVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      +..+ +.+++++ .+..+.++||-|+++||++|   .+.|.++++.+ +.+.|+.++   +.+++++|++. .|++++|+
T Consensus        23 ~~~i~s~~e~e~-fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vvlfk   93 (124)
T 2l4c_A           23 PTWLTDVPAAME-FIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTICLFR   93 (124)
T ss_dssp             CEECCSHHHHHH-HHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEEEEE
T ss_pred             ceEcCCHHHHHH-HHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEEEEE
Confidence            3445 4567777 45678889999999999998   67899999999 679998775   37799999999 89999999


Q ss_pred             CCe-EEEEEEc----CCCHHHHHHHHHHH
Q 030165          157 NGE-KKESIIG----AVPKSTLSSTLDKY  180 (182)
Q Consensus       157 ~G~-~v~~~~G----~~~~~~l~~~l~~~  180 (182)
                      ++. ....+.|    ..+.+.|.+||...
T Consensus        94 kfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           94 LVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             TTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             cCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            763 4455666    67999999999863

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.79  E-value=8.1e-08  Score=75.27  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=67.5

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC-------------------------------hHHHHH
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS-------------------------------PNIATK  143 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~-------------------------------~~l~~~  143 (182)
                      .||+.||++||++|....+.|.+++++|.+ ++.++.|++|..                               .++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566667999999999999999999999864 488888876532                               246777


Q ss_pred             cCCC------------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          144 YGIR------------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~------------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      ||+.            .+|+++++ ++|+++..+.|..    +.+++.+.|+.+.
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            8873            37988888 5999998887643    5788888888764

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.76  E-value=4.3e-08  Score=76.68  Aligned_cols=86  Identities=9%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC----------------------------hHHHHHcCC
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS----------------------------PNIATKYGI  146 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~----------------------------~~l~~~~~I  146 (182)
                      .||+.||++||++|....+.|.++++++.+ ++.++.|++|..                            .++++.||+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            455556899999999999999999999875 588888877532                            246777888


Q ss_pred             C------------cccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHHh
Q 030165          147 R------------SIPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKYV  181 (182)
Q Consensus       147 ~------------~iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~l  181 (182)
                      .            .+|+++++ ++|+++..+.|.    .+.+++.+.|+.+.
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            3            47988888 599998888753    46788888888764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.76  E-value=3.8e-08  Score=66.96  Aligned_cols=73  Identities=23%  Similarity=0.441  Sum_probs=57.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-----CCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY-----GIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~-----~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                      |+.|+.+||++|++.+..|++.      .+.|..+|++++++..+.+     |.+++|++++ .||+..   .| .+.++
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~-~~~~e   74 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TN-PSADE   74 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ES-CCHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eC-CCHHH
Confidence            6779999999999999888763      4788899999888755443     7899999754 577542   23 57889


Q ss_pred             HHHHHHHHh
Q 030165          173 LSSTLDKYV  181 (182)
Q Consensus       173 l~~~l~~~l  181 (182)
                      |+++|+++.
T Consensus        75 l~~~L~el~   83 (92)
T 2lqo_A           75 VKAKLVKIA   83 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.76  E-value=1.9e-08  Score=66.57  Aligned_cols=74  Identities=14%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCC-----CcccEEEEEECCeEEEEEEc
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGI-----RSIPTVLFFKNGEKKESIIG  166 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I-----~~iPTl~~f~~G~~v~~~~G  166 (182)
                      ..++.|+++||++|++....|++..    -.+.++.+|.++.    +++.+.+|.     .++|++++  ||+.+.    
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~----   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG----   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE----
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe----
Confidence            4578899999999999998887653    2345555555544    457778888     99999955  886442    


Q ss_pred             CCCHHHHHHHHHHHh
Q 030165          167 AVPKSTLSSTLDKYV  181 (182)
Q Consensus       167 ~~~~~~l~~~l~~~l  181 (182)
                        ..+++.+++++++
T Consensus        74 --g~~~i~~~~~~~~   86 (89)
T 3msz_A           74 --GFTELKANADKIL   86 (89)
T ss_dssp             --SHHHHHHTHHHHT
T ss_pred             --ChHHHHHHHHHHh
Confidence              4567777777665

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.74  E-value=3e-08  Score=64.71  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      ++.|+++||++|+.+.+.+++.      .+.+..+|++++++    +.+.+++.++|+++  .+|+.+   .|   .+++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i---~g---~~~i   68 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI---GG---YDDL   68 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE---ES---HHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE---eC---HHHH
Confidence            6779999999999999998875      26677788876544    56789999999984  488653   23   3456


Q ss_pred             HHHHH
Q 030165          174 SSTLD  178 (182)
Q Consensus       174 ~~~l~  178 (182)
                      .++++
T Consensus        69 ~~~~~   73 (82)
T 1fov_A           69 YALDA   73 (82)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.74  E-value=2.9e-08  Score=68.38  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC-----hHHH----HHcCCCcccEEEEEECCeEEEEEE
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS-----PNIA----TKYGIRSIPTVLFFKNGEKKESII  165 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~-----~~l~----~~~~I~~iPTl~~f~~G~~v~~~~  165 (182)
                      +..++.||++||++|++..+.|++..      +.+-.+|++..     +++.    +.+|+.++|++++  +|+   +..
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---~~i   89 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---KAI   89 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---EEE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---EEE
Confidence            44577799999999999999998763      44445555531     2332    3469999999876  552   345


Q ss_pred             cCCCHHHHHHHHH
Q 030165          166 GAVPKSTLSSTLD  178 (182)
Q Consensus       166 G~~~~~~l~~~l~  178 (182)
                      |..+.++|.++|+
T Consensus        90 gg~~~~~l~~~L~  102 (103)
T 3nzn_A           90 VGFKEKEIRESLG  102 (103)
T ss_dssp             ESCCHHHHHHHTT
T ss_pred             EcCCHHHHHHHhC
Confidence            6678888888763

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.73  E-value=7.6e-08  Score=76.04  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             CCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC-----------------------------hHHHH
Q 030165           94 ENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS-----------------------------PNIAT  142 (182)
Q Consensus        94 ~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~-----------------------------~~l~~  142 (182)
                      ++.+||+|| ++||++|....+.|.++++++.. ++.++.|.+|..                             .++++
T Consensus        29 k~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            448999998 99999999999999999988863 488888876531                             24667


Q ss_pred             HcCCC------------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHHh
Q 030165          143 KYGIR------------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKYV  181 (182)
Q Consensus       143 ~~~I~------------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~l  181 (182)
                      .||+.            .+|+++++ ++|+++..+.|..    +.+++.+.|+.+.
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            78874            57988888 5999988887643    5788888887764

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.73  E-value=1e-08  Score=78.58  Aligned_cols=86  Identities=17%  Similarity=0.376  Sum_probs=66.5

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCC-h-------------------------------
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS-P-------------------------------  138 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~-~-------------------------------  138 (182)
                      .+++||.|+..||++|+.+.|.+   +++.+.++++++|..++..-. +                               
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~lf~a~~~  100 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTVPLFEAVQK  100 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecccccccCHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence            47899999999999999999986   799999987788887775320 0                               


Q ss_pred             -----------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCH------H
Q 030165          139 -----------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPK------S  171 (182)
Q Consensus       139 -----------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~------~  171 (182)
                                                               ..++++||+++||+++  ||+......|..+.      +
T Consensus       101 ~~~~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPtfvv--nG~~~v~~~~~~~~~~~~~~~  178 (191)
T 3l9s_A          101 TQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMFV--NGKYQINPQGMDTSSMDVFVQ  178 (191)
T ss_dssp             SCCCSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHhCCcccCEEEE--CCEEEECccccCCccchhhHH
Confidence                                                     1456689999999987  89876655566554      4


Q ss_pred             HHHHHHHHHh
Q 030165          172 TLSSTLDKYV  181 (182)
Q Consensus       172 ~l~~~l~~~l  181 (182)
                      ++.+.|+.|+
T Consensus       179 ~~~~~i~~L~  188 (191)
T 3l9s_A          179 QYADTVKYLV  188 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777665

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.73  E-value=3.9e-08  Score=67.94  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             hhHHHHHHcCCCcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEE
Q 030165           84 SSWENLVISSENPVLVEFWA-----PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLF  154 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a-----~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~  154 (182)
                      +.+++. ...+ .|+| |++     +||++|+++.+.|++..      +.|..+|++++++    +.+.+|+.++|++  
T Consensus         8 ~~~~~~-i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--   76 (105)
T 2yan_A            8 ERLKVL-TNKA-SVML-FMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSNWPTYPQL--   76 (105)
T ss_dssp             HHHHHH-HTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--
T ss_pred             HHHHHH-hccC-CEEE-EEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--
Confidence            344453 3333 4555 676     99999999999998762      7788899988776    4556899999998  


Q ss_pred             EECCeEE
Q 030165          155 FKNGEKK  161 (182)
Q Consensus       155 f~~G~~v  161 (182)
                      |.||+.+
T Consensus        77 ~i~g~~i   83 (105)
T 2yan_A           77 YVKGELV   83 (105)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            4588754

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.73  E-value=4.6e-08  Score=67.23  Aligned_cols=61  Identities=15%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-----CCCcccEEEEEECCeEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY-----GIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~-----~I~~iPTl~~f~~G~~v  161 (182)
                      +...-++.|+++||++|++....|++..      +.+..+|++.+++..+.+     |..++|++  |.||+.+
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~i   78 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHI   78 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEE
Confidence            3455677899999999999999998762      677788998887655444     99999987  4588644

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.3e-07  Score=71.91  Aligned_cols=91  Identities=10%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             HcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh---------------HHHH---HcCCCcc
Q 030165           91 ISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP---------------NIAT---KYGIRSI  149 (182)
Q Consensus        91 ~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~---------------~l~~---~~~I~~i  149 (182)
                      .+..|.++|+++++||..|..|....   +++.+.+..++.++.+|++...               .++.   .|+++++
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~  131 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQF  131 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTC
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Confidence            44689999999999999999997554   5666667667899999998765               3443   3899999


Q ss_pred             cEEEEEE-C---CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFK-N---GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~-~---G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |+++++. +   ++++.++.|..++++|.+.|...+
T Consensus       132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            9999993 2   367899999999999998887654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.65  E-value=6.4e-08  Score=67.54  Aligned_cols=57  Identities=23%  Similarity=0.513  Sum_probs=42.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hH----HHHHcCCCcccEEEEEECCeEEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PN----IATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~----l~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      ++.|+++||++|++..+.|+++.      +.+..+|++..    ++    +.+.+|+.++|++  |.||+.+.
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig   85 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKHIG   85 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            66799999999999999998752      44556666542    22    4556799999998  45897544

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.65  E-value=7.4e-09  Score=79.83  Aligned_cols=46  Identities=17%  Similarity=0.382  Sum_probs=42.3

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCCh
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDSP  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~~  138 (182)
                      ..+++||+||+.||++|+++.|.+   +++.+.+++++.|.+++++.+.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~~  160 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMG  160 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcCC
Confidence            467899999999999999999999   9999999989999999998753

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.65  E-value=7.7e-08  Score=64.39  Aligned_cols=57  Identities=12%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeEE
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      .++.|+++||++|+.+.+.|++.      .+.|..+|++++++    +.+.+++.++|++  |.||+.+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i   67 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV   67 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            47789999999999999988864      37778889887754    4457899999975  4588643

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.62  E-value=2.4e-07  Score=72.31  Aligned_cols=94  Identities=12%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             cEEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           78 VQVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      +.++ +.+++++ .+++++.+||-|+++||   ....+.|.++|+.+. .+.|+...   +.+++++|+|.+ |++++|+
T Consensus        11 ~~~l~s~~~~~~-~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~~~F~~t~---~~~v~~~~~v~~-p~i~lfk   81 (227)
T 4f9z_D           11 PTWLTDVPAAME-FIAATEVAVIGFFQDLE---IPAVPILHSMVQKFP-GVSFGIST---DSEVLTHYNITG-NTICLFR   81 (227)
T ss_dssp             CEECCSHHHHHH-HHHTSSEEEEEECSCSC---STHHHHHHHHTTTCT-TSEEEEEC---CHHHHHHTTCCS-SEEEEEE
T ss_pred             CeeeCCHHHHHH-HHhcCCeEEEEEecCCC---chhHHHHHHHHHhCC-CceEEEEC---CHHHHHHcCCCC-CeEEEEE
Confidence            4555 5688888 55778899999999995   568999999999994 68888653   678999999998 9999998


Q ss_pred             CCe-EEEEEE----cCCCHHHHHHHHHHH
Q 030165          157 NGE-KKESII----GAVPKSTLSSTLDKY  180 (182)
Q Consensus       157 ~G~-~v~~~~----G~~~~~~l~~~l~~~  180 (182)
                      ++. ....+.    |..+.+.|.+||...
T Consensus        82 ~~~~~~~~~~~~~~g~~~~~~l~~fi~~~  110 (227)
T 4f9z_D           82 LVDNEQLNLEDEDIESIDATKLSRFIEIN  110 (227)
T ss_dssp             TTTTEEEEECHHHHHTCCHHHHHHHHHHH
T ss_pred             ecCcccccccccccCCCCHHHHHHHHHHh
Confidence            643 334555    478999999999863

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.61  E-value=3.2e-07  Score=75.95  Aligned_cols=109  Identities=9%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             ccCccEEcChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHH----HHcCC
Q 030165           74 AVNEVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIA----TKYGI  146 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~----~~~~I  146 (182)
                      ....+.+++.+++..+.... ++..++.|..+||+.|..+.+.|+++++++.+  ++.|+.+|.++.+.++    +.||+
T Consensus       224 ~~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi  303 (350)
T 1sji_A          224 QRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKI  303 (350)
T ss_dssp             CCCSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCS
T ss_pred             CccchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCC
Confidence            34678899999998854332 24456669999999999999999999999986  8999999999888877    78999


Q ss_pred             C-cccEEEEEEC--CeEEEE-E---EcCCCHHHHHHHHHHHhC
Q 030165          147 R-SIPTVLFFKN--GEKKES-I---IGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       147 ~-~iPTl~~f~~--G~~v~~-~---~G~~~~~~l~~~l~~~l~  182 (182)
                      . ..|+++++..  |+.... .   .|..+.+.|.+|++.+++
T Consensus       304 ~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          304 DLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             CTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             CccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence            8 5899999963  433221 2   246789999999999873

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.57  E-value=7.6e-07  Score=65.38  Aligned_cols=106  Identities=13%  Similarity=0.216  Sum_probs=79.7

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcCceEEEEEeC--CCChHHHHHcCCCc--cc
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAGKVACFKLNT--DDSPNIATKYGIRS--IP  150 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--d~~~~l~~~~~I~~--iP  150 (182)
                      .-+.++|.++... +..++.++.++++.. .-..=..+.+.++++|+++.+++.|+.+|.  ++...+++.||+..  +|
T Consensus        14 PLV~e~t~en~~~-~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P   92 (147)
T 3bj5_A           14 PLVIEFTEQTAPK-IFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECP   92 (147)
T ss_dssp             -CEEECCTTTHHH-HHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCS
T ss_pred             CeeEEeccccHHH-HhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCC
Confidence            4578899999877 456677766654443 333355678999999999999999999999  55667899999996  89


Q ss_pred             EEEEEEC-CeEEEEE--EcCCCHHHHHHHHHHHhC
Q 030165          151 TVLFFKN-GEKKESI--IGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       151 Tl~~f~~-G~~v~~~--~G~~~~~~l~~~l~~~l~  182 (182)
                      +++++.. +......  .+..+.+.|.+|++.+++
T Consensus        93 ~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           93 AVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             EEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHT
T ss_pred             EEEEEecccccccCCCCcccCCHHHHHHHHHHHHc
Confidence            9999974 3221222  267889999999999874

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.50  E-value=7.7e-07  Score=69.94  Aligned_cols=85  Identities=11%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             CCCcEEEEEEcCC-Chhhh-----hhhHHHHHHHHHhcCceEEEEEeCC----------------------C-ChHHHHH
Q 030165           93 SENPVLVEFWAPW-CGPCR-----MIAPAIEELAKEYAGKVACFKLNTD----------------------D-SPNIATK  143 (182)
Q Consensus        93 ~~~~vlV~F~a~w-C~~C~-----~~~p~l~~~a~~~~~~v~~~~vd~d----------------------~-~~~l~~~  143 (182)
                      .++++||+||+.| |++|.     ...+.|.+.   + ..+.++.|+.|                      . +.++++.
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~  122 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKR  122 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHH
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHH
Confidence            4689999999988 99999     777777766   4 44777777653                      2 3568889


Q ss_pred             cCCCc---------ccEEEEE-ECCeEEEEEEc-----CCCHHHHHHHHHHHh
Q 030165          144 YGIRS---------IPTVLFF-KNGEKKESIIG-----AVPKSTLSSTLDKYV  181 (182)
Q Consensus       144 ~~I~~---------iPTl~~f-~~G~~v~~~~G-----~~~~~~l~~~l~~~l  181 (182)
                      |||..         +|+.+++ ++|+++....+     ..+.+++.+.|+.+.
T Consensus       123 yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          123 YGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             TTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             hCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            99864         7988888 49998877653     345788888877653

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.46  E-value=1.7e-07  Score=67.43  Aligned_cols=71  Identities=18%  Similarity=0.356  Sum_probs=47.7

Q ss_pred             hhhHHHHHHcCCCcEEEEEEcCCChhhhhh-hHHHHHHHHHhcCceEEEEEeCCCC-------hHHHHHcCCCcccEEEE
Q 030165           83 DSSWENLVISSENPVLVEFWAPWCGPCRMI-APAIEELAKEYAGKVACFKLNTDDS-------PNIATKYGIRSIPTVLF  154 (182)
Q Consensus        83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~-~p~l~~~a~~~~~~v~~~~vd~d~~-------~~l~~~~~I~~iPTl~~  154 (182)
                      .+.+++.+. ..+  |+.|+.+||++|++. .+.|+++...   .+.+..+|++..       .++.+.+|+.++|++  
T Consensus        27 ~~~v~~~i~-~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~---~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--   98 (129)
T 3ctg_A           27 VAHVKDLIG-QKE--VFVAAKTYCPYCKATLSTLFQELNVP---KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--   98 (129)
T ss_dssp             HHHHHHHHH-HSS--EEEEECTTCHHHHHHHHHHHTTSCCC---GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHHHc-CCC--EEEEECCCCCchHHHHHHHHHhcCcc---CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--
Confidence            344555343 333  677999999999999 8888765421   144445555433       357888999999996  


Q ss_pred             EECCeEE
Q 030165          155 FKNGEKK  161 (182)
Q Consensus       155 f~~G~~v  161 (182)
                      |.+|+.+
T Consensus        99 fi~g~~i  105 (129)
T 3ctg_A           99 YINGKHI  105 (129)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            5588754

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.45  E-value=8.2e-07  Score=68.39  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHH-HHHHHHh--cCceEEEEEeCCCCh-------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAI-EELAKEY--AGKVACFKLNTDDSP-------------------------------  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l-~~~a~~~--~~~v~~~~vd~d~~~-------------------------------  138 (182)
                      ..+.+||.|+...|++|+.+.+.+ ..+.++|  .++++|+..+.--..                               
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~  107 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEK  107 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence            356689999999999999999886 5677777  457888877651000                               


Q ss_pred             ----------------------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHH
Q 030165          139 ----------------------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKST  172 (182)
Q Consensus       139 ----------------------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~  172 (182)
                                                                    .+++++||.++||+++  ||+.   +.|..+.++
T Consensus       108 ~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~~---~~G~~~~e~  182 (202)
T 3gha_A          108 QPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDKV---IKNFADYDE  182 (202)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTEE---CSCTTCHHH
T ss_pred             CccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHH
Confidence                                                          1445689999999988  8874   678999999


Q ss_pred             HHHHHHHHh
Q 030165          173 LSSTLDKYV  181 (182)
Q Consensus       173 l~~~l~~~l  181 (182)
                      |.+.|++.+
T Consensus       183 l~~~i~~~~  191 (202)
T 3gha_A          183 IKETIEKEL  191 (202)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.36  E-value=1.4e-06  Score=68.43  Aligned_cols=88  Identities=15%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             CCcEEEEEEcCCChhhhhhhHH-HHHHHHHh--cCceEEEEEeCC----------------------------------C
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPA-IEELAKEY--AGKVACFKLNTD----------------------------------D  136 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~-l~~~a~~~--~~~v~~~~vd~d----------------------------------~  136 (182)
                      .+.+|+.|....|++|+.+.+. +.++.++|  .++++++..+.-                                  .
T Consensus        39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~~f~~~~~aLF~~q~~~  118 (226)
T 3f4s_A           39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSW  118 (226)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHHHHHHHHHHHHHTGGGS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChHHHHHHHHHHHHhCHhh
Confidence            4567999999999999999986 57888888  467888766540                                  0


Q ss_pred             ------C-h---------------------------------HHHHH-cCCCcccEEEEEE-CCeEEE-----EEEcCCC
Q 030165          137 ------S-P---------------------------------NIATK-YGIRSIPTVLFFK-NGEKKE-----SIIGAVP  169 (182)
Q Consensus       137 ------~-~---------------------------------~l~~~-~~I~~iPTl~~f~-~G~~v~-----~~~G~~~  169 (182)
                            . .                                 +.+.+ +||.++||++++. ||+.+.     ...|..+
T Consensus       119 ~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~  198 (226)
T 3f4s_A          119 NYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKE  198 (226)
T ss_dssp             CSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCCC
T ss_pred             cccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCcCCEEEEEcCCCEEeeCCCCcccccccC
Confidence                  0 0                                 14567 9999999999975 777431     3344455


Q ss_pred             HHHHHHHHHHHh
Q 030165          170 KSTLSSTLDKYV  181 (182)
Q Consensus       170 ~~~l~~~l~~~l  181 (182)
                      .++|.+.|++++
T Consensus       199 ~e~l~~~I~~~l  210 (226)
T 3f4s_A          199 LKYFTNVIDKLY  210 (226)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.33  E-value=2e-06  Score=59.66  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             hhHHHHHHcCCCcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEE
Q 030165           84 SSWENLVISSENPVLVEFWA-----PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLF  154 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a-----~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~  154 (182)
                      +.+++.+ ..++ |+ .|+.     +||++|++....|++.      .+.+..+|++++++    +.+.+|..++|++  
T Consensus         6 ~~~~~~i-~~~~-vv-vy~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--   74 (109)
T 1wik_A            6 SGLKVLT-NKAS-VM-LFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--   74 (109)
T ss_dssp             CCHHHHH-TTSS-EE-EEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHh-ccCC-EE-EEEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--
Confidence            4456633 4343 44 4666     9999999999999775      37888999988765    4556789999985  


Q ss_pred             EECCeEE
Q 030165          155 FKNGEKK  161 (182)
Q Consensus       155 f~~G~~v  161 (182)
                      |.||+.+
T Consensus        75 fi~g~~i   81 (109)
T 1wik_A           75 YVRGDLV   81 (109)
T ss_dssp             ECSSSEE
T ss_pred             EECCEEE
Confidence            5588754

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.32  E-value=1.4e-06  Score=60.92  Aligned_cols=68  Identities=16%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--C-----hHHHHHcCCCcccEEEEEE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--S-----PNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~-----~~l~~~~~I~~iPTl~~f~  156 (182)
                      +.+++.+ .+++  ++.|+++||++|++..+.|++.      .+.+..+|+|.  +     ..+.+..|..++|++++  
T Consensus         8 ~~~~~~i-~~~~--v~vy~~~~Cp~C~~ak~~L~~~------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--   76 (114)
T 3h8q_A            8 RHLVGLI-ERSR--VVIFSKSYCPHSTRVKELFSSL------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--   76 (114)
T ss_dssp             HHHHHHH-HHCS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--
T ss_pred             HHHHHHh-ccCC--EEEEEcCCCCcHHHHHHHHHHc------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--
Confidence            4455533 4343  4449999999999999999875      25566677764  2     23567789999999866  


Q ss_pred             CCeEEE
Q 030165          157 NGEKKE  162 (182)
Q Consensus       157 ~G~~v~  162 (182)
                      ||+.+.
T Consensus        77 ~g~~ig   82 (114)
T 3h8q_A           77 NKVHVG   82 (114)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            886543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.32  E-value=3.5e-06  Score=70.31  Aligned_cols=109  Identities=11%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             hccCccEEcChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHH----HHHcC
Q 030165           73 EAVNEVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNI----ATKYG  145 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l----~~~~~  145 (182)
                      .....+.+++.+++....... .++.++.|+..++..+..+...|+++++++.+  ++.|+.+|.++.+..    .+.||
T Consensus       225 ~~~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fg  304 (367)
T 3us3_A          225 HRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFD  304 (367)
T ss_dssp             TCSCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHT
T ss_pred             cCccceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcC
Confidence            334668899999988755442 45677889999999999999999999999998  699999999987754    34599


Q ss_pred             CC-cccEEEEEECCe---EEEEEE---cCCCHHHHHHHHHHHh
Q 030165          146 IR-SIPTVLFFKNGE---KKESII---GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       146 I~-~iPTl~~f~~G~---~v~~~~---G~~~~~~l~~~l~~~l  181 (182)
                      +. .+|+++++...+   ......   +..+.+.|.+|+++++
T Consensus       305 l~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~  347 (367)
T 3us3_A          305 IDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  347 (367)
T ss_dssp             CCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHH
Confidence            98 899999997332   222233   3689999999999886

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.30  E-value=6e-06  Score=65.24  Aligned_cols=96  Identities=9%  Similarity=0.184  Sum_probs=74.8

Q ss_pred             ccEEcCh-hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           77 EVQVVTD-SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        77 ~v~~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      .+.++++ ++++. +++++..++|-|+++||.   .....|.+++..+.+++.|+.+.   +.+++++|++.. |++++|
T Consensus         7 ~v~~l~s~~~~~~-~l~~~~v~vvgff~~~~~---~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~f   78 (252)
T 2h8l_A            7 ASVPLRTEEEFKK-FISDKDASIVGFFDDSFS---EAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILF   78 (252)
T ss_dssp             CEEECCSHHHHHH-HHTSSSCEEEEEESCTTS---HHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEE
T ss_pred             CceeecCHHHHHH-HhhcCCeEEEEEECCCCC---hHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEE
Confidence            3677754 55555 667778889999999854   47789999999998889998773   577999999997 999999


Q ss_pred             ECC-------eEEEEE-EcCCCHHHHHHHHHHH
Q 030165          156 KNG-------EKKESI-IGAVPKSTLSSTLDKY  180 (182)
Q Consensus       156 ~~G-------~~v~~~-~G~~~~~~l~~~l~~~  180 (182)
                      +.+       +....+ .|..+.+.|.+||...
T Consensus        79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~  111 (252)
T 2h8l_A           79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN  111 (252)
T ss_dssp             CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH
T ss_pred             cchhhcccccccccccCCCCcCHHHHHHHHHhc
Confidence            853       223355 6888999999999863

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=98.30  E-value=1.8e-06  Score=64.97  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHH-HHHHHHhcCceEEEEEe
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAI-EELAKEYAGKVACFKLN  133 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l-~~~a~~~~~~v~~~~vd  133 (182)
                      .++++|+||..+|++|..+.+.+ .++.+++.+++.+..+.
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~   57 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFH   57 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEE
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEe
Confidence            56789999999999999999999 99999888766666554

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.28  E-value=4e-06  Score=63.49  Aligned_cols=73  Identities=16%  Similarity=0.289  Sum_probs=54.6

Q ss_pred             CcEEEEEEcCCChhhhh-hhHHHHHHHHHhcC-ce-EEEEEeCCC-----------------------ChHHHHHcCCC-
Q 030165           95 NPVLVEFWAPWCGPCRM-IAPAIEELAKEYAG-KV-ACFKLNTDD-----------------------SPNIATKYGIR-  147 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~-~~p~l~~~a~~~~~-~v-~~~~vd~d~-----------------------~~~l~~~~~I~-  147 (182)
                      ..||+.||+.||+.|.. ..+.|.+.++++.. .+ .++.|..|.                       +.++++.||+. 
T Consensus        49 ~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~  128 (176)
T 4f82_A           49 RVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQ  128 (176)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred             eEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCc
Confidence            35677888999999999 99999999988863 36 777776642                       34578888873 


Q ss_pred             ----------cccEEEEEECCeEEEEEEcC
Q 030165          148 ----------SIPTVLFFKNGEKKESIIGA  167 (182)
Q Consensus       148 ----------~iPTl~~f~~G~~v~~~~G~  167 (182)
                                +.++.+++++|++.....+.
T Consensus       129 ~~~~~G~g~~s~R~tfII~dG~I~~~~~~~  158 (176)
T 4f82_A          129 DLSARGMGIRSLRYAMVIDGGVVKTLAVEA  158 (176)
T ss_dssp             ECGGGTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             cccccCCCcccccEEEEEcCCEEEEEEEcC
Confidence                      24655555999998888754

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.24  E-value=1.1e-05  Score=67.59  Aligned_cols=105  Identities=10%  Similarity=0.019  Sum_probs=82.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCG-PCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPT  151 (182)
                      ...+.+++.+++.. +...+.+++|.|+.+++. .+..+...+.+++.++.+++.|+.+|.++...+.+.||+.  .+|.
T Consensus       218 ~p~v~elt~~~~~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl~~~~~P~  296 (382)
T 2r2j_A          218 VPLVREITFENGEE-LTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPV  296 (382)
T ss_dssp             SCSSEECCHHHHHH-HHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTCCGGGCSE
T ss_pred             cCceEecChhhHHH-HhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCCCccCCCE
Confidence            45688999999988 557789999999999974 4555666677777677788999999999999999999998  6899


Q ss_pred             EEEEECCeEEEEEE---cCCCHHHHHHHHHHHh
Q 030165          152 VLFFKNGEKKESII---GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       152 l~~f~~G~~v~~~~---G~~~~~~l~~~l~~~l  181 (182)
                      ++++..++. ..+.   +..+.+.|.+|++.++
T Consensus       297 i~i~~~~~~-y~~~~~~~~~~~~~i~~F~~d~~  328 (382)
T 2r2j_A          297 IAIDSFRHM-YVFGDFKDVLIPGKLKQFVFDLH  328 (382)
T ss_dssp             EEEECSSCE-EECCCSGGGGSTTHHHHHHHHHH
T ss_pred             EEEEcchhc-CCCCccccccCHHHHHHHHHHHH
Confidence            988865443 2222   3346789999999876

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.19  E-value=7.1e-06  Score=67.62  Aligned_cols=86  Identities=9%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC---------------------CChHHHHHcCCC---
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD---------------------DSPNIATKYGIR---  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d---------------------~~~~l~~~~~I~---  147 (182)
                      .+++||++|| +.||+.|....+.|.+   ....++.++.|+.|                     .+.++++.|||.   
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~e~~~~~~---~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~   99 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTREAVEFSR---ENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENG   99 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHHHHHHHHH---SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEETT
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHH---HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCCC
Confidence            5789999999 6899999987777654   22335788888764                     344688889994   


Q ss_pred             -cccEEEEE-ECCeEEEEEEcCCC---HHHHHHHHHHHh
Q 030165          148 -SIPTVLFF-KNGEKKESIIGAVP---KSTLSSTLDKYV  181 (182)
Q Consensus       148 -~iPTl~~f-~~G~~v~~~~G~~~---~~~l~~~l~~~l  181 (182)
                       .+|+.+++ ++|++...+.+...   .+++.++|++++
T Consensus       100 ~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A          100 KTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             EECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc
Confidence             57776666 69999888877554   577777777764

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.08  E-value=1.9e-05  Score=62.38  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=78.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChh----hhhhhHHHHHHHHHhcCc---eEEEEEeCCCChHHHHHcCC-
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP----CRMIAPAIEELAKEYAGK---VACFKLNTDDSPNIATKYGI-  146 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~----C~~~~p~l~~~a~~~~~~---v~~~~vd~d~~~~l~~~~~I-  146 (182)
                      ...+.++|.+++..+   .+.+++|.|+......    -..+...+.++++++.++   +.|+.+|.++...+.+.||+ 
T Consensus       113 ~Plv~e~t~~n~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~  189 (252)
T 2h8l_A          113 FGICPHMTEDNKDLI---QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE  189 (252)
T ss_dssp             SCSSCEECTTTHHHH---SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCC
T ss_pred             cCCeeecccccHhhh---cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCC
Confidence            467889999998884   3567777777543321    124677888899999877   99999999999989999999 


Q ss_pred             ---CcccEEEEEE-CCeEEEEEEcCCCHHH--HHHHHHHHh
Q 030165          147 ---RSIPTVLFFK-NGEKKESIIGAVPKST--LSSTLDKYV  181 (182)
Q Consensus       147 ---~~iPTl~~f~-~G~~v~~~~G~~~~~~--l~~~l~~~l  181 (182)
                         ...|.++++. +|+ +....+..+.+.  |.+|++.++
T Consensus       190 ~~~~~~P~v~i~~~~~~-ky~~~~~~t~~~~~i~~F~~~~~  229 (252)
T 2h8l_A          190 STAGEIPVVAIRTAKGE-KFVMQEEFSRDGKALERFLQDYF  229 (252)
T ss_dssp             CCSCSSCEEEEECTTSC-EEECCSCCCTTSHHHHHHHHHHH
T ss_pred             CccCCCCEEEEEeCcCc-EecCCcccCcchHHHHHHHHHHH
Confidence               3589999995 343 333446677778  999999876

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=98.05  E-value=8.8e-05  Score=56.69  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=37.2

Q ss_pred             HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.++||.++||+++++||+.+..+.|..+.+.|.++|++++
T Consensus       168 ~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          168 RVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            456689999999999999998778899999999999999876

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.04  E-value=3.4e-05  Score=57.87  Aligned_cols=84  Identities=24%  Similarity=0.384  Sum_probs=61.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHH-HHHHHHhc--CceEEEEEeCC----------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAI-EELAKEYA--GKVACFKLNTD----------------------------------  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l-~~~a~~~~--~~v~~~~vd~d----------------------------------  135 (182)
                      ..+..|+.|+...|++|..+.+.+ +++.++|.  +++.+...+..                                  
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~   89 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAA   89 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCSCTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcCCcchHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence            356789999999999999999998 56777774  35666654320                                  


Q ss_pred             -------------------------------------CC----------hHHHHHcCCCcccEEEEEECCeEEEEEEcCC
Q 030165          136 -------------------------------------DS----------PNIATKYGIRSIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       136 -------------------------------------~~----------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~  168 (182)
                                                           +.          ..+++++||.++||+++  ||+.   +.|..
T Consensus        90 ~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPt~vv--nG~~---~~G~~  164 (186)
T 3bci_A           90 QQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFI--NGEK---VEDPY  164 (186)
T ss_dssp             CCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTTCCSSSEEEE--TTEE---CSCTT
T ss_pred             CcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEE---cCCCC
Confidence                                                 00          01345679999999987  8864   56889


Q ss_pred             CHHHHHHHHHHHh
Q 030165          169 PKSTLSSTLDKYV  181 (182)
Q Consensus       169 ~~~~l~~~l~~~l  181 (182)
                      +.+.|.++|++.+
T Consensus       165 ~~~~l~~~i~~~~  177 (186)
T 3bci_A          165 DYESYEKLLKDKI  177 (186)
T ss_dssp             CHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998765

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.00  E-value=6.4e-05  Score=59.32  Aligned_cols=96  Identities=8%  Similarity=0.078  Sum_probs=74.0

Q ss_pred             ccEEcCh-hhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTD-SSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~-~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      .+.++++ +++++. ++. +..++|-|++++|.   ...+.|.++|+.+.+.+.|+.+.   +.+++.+|++.. |++++
T Consensus         7 ~v~~l~s~~~~~~~-~~~~~~v~vVgff~~~~~---~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~ivl   78 (250)
T 3ec3_A            7 PSKEILTLKQVQEF-LKDGDDVVILGVFQGVGD---PGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GKLVL   78 (250)
T ss_dssp             SSEECCCHHHHHHH-HHHCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SEEEE
T ss_pred             CceecCCHHHHHHH-HhcCCCeEEEEEEcCCCc---hHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-CeEEE
Confidence            3566754 777774 455 78899999999864   58889999999998889998763   578999999998 99999


Q ss_pred             EECC-------eEEEEEE--cCCCHHHHHHHHHHH
Q 030165          155 FKNG-------EKKESII--GAVPKSTLSSTLDKY  180 (182)
Q Consensus       155 f~~G-------~~v~~~~--G~~~~~~l~~~l~~~  180 (182)
                      |+.+       +....+.  |..+.+.|.+||...
T Consensus        79 fk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~  113 (250)
T 3ec3_A           79 MQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH  113 (250)
T ss_dssp             ECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH
T ss_pred             EecchhhccccccceeccCCCCCCHHHHHHHHHHc
Confidence            9742       1223445  578999999999863

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.98  E-value=6.7e-05  Score=59.19  Aligned_cols=106  Identities=13%  Similarity=0.177  Sum_probs=79.3

Q ss_pred             ccCccEEcChhhHHHHHHcCCCcEEEEEEcC-CC---hh-hhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCc
Q 030165           74 AVNEVQVVTDSSWENLVISSENPVLVEFWAP-WC---GP-CRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRS  148 (182)
Q Consensus        74 ~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~-wC---~~-C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~  148 (182)
                      ....+.+++.+++....  .+++.++.|+.. +.   .. ...+...++++++++. ++.|+.+|.++.....+.||+..
T Consensus       114 ~~Plv~e~t~~n~~~~~--~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~  190 (250)
T 3ec3_A          114 ALPLVGHRKTSNDAKRY--SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSE  190 (250)
T ss_dssp             SSCTEEEECTTTHHHHS--CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSS
T ss_pred             CCCceeecCccchhhhh--ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCc
Confidence            34668899999988744  477887777753 33   33 3457888999999999 89999999999888899999974


Q ss_pred             --c-cEEEEEECCeEEEEEE-cCCCHHHHHHHHHHHhC
Q 030165          149 --I-PTVLFFKNGEKKESII-GAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       149 --i-PTl~~f~~G~~v~~~~-G~~~~~~l~~~l~~~l~  182 (182)
                        . |.++++...+...... +..+.+.|.+|++.+++
T Consensus       191 ~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          191 SGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             CSCSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHHC
Confidence              4 4676665333333333 66889999999998874

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.97  E-value=6.7e-05  Score=58.50  Aligned_cols=88  Identities=14%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++.+|++|| +.||+.|....+.|.+..+++.. .+.++.|..|.                            ..++++
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak  130 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSR  130 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHH
Confidence            3689999999 99999999999999999998864 48888887753                            336889


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      .||+-      ..+.++++ ++|++.......    .+.+++.+.|+.+
T Consensus       131 ~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          131 DYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            99983      34555555 688876655432    3567777777654

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=97.97  E-value=5.4e-05  Score=58.37  Aligned_cols=36  Identities=14%  Similarity=0.362  Sum_probs=31.1

Q ss_pred             HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          142 TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       142 ~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++||+++||+++  ||+.   +.|..+.+.|.+.|++.++
T Consensus       162 ~~~GV~GtPtfvv--ng~~---~~G~~~~e~l~~~i~~~~~  197 (205)
T 3gmf_A          162 NQYNVSGTPSFMI--DGIL---LAGTHDWASLRPQILARLN  197 (205)
T ss_dssp             HHHCCCSSSEEEE--TTEE---CTTCCSHHHHHHHHHHHHT
T ss_pred             HHcCCccCCEEEE--CCEE---EeCCCCHHHHHHHHHHHhh
Confidence            6789999999988  8873   6799999999999998763

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.94  E-value=0.00011  Score=56.21  Aligned_cols=42  Identities=12%  Similarity=0.195  Sum_probs=37.3

Q ss_pred             HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.++||.++||+++..+|+.+....|..+.+++.+.|++++
T Consensus       161 ~a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          161 LAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            445689999999999999998888889999999999999886

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=97.90  E-value=3.7e-05  Score=58.20  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCC------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTD------------------------------------  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~v~~~~vd~d------------------------------------  135 (182)
                      ....+||.|....|++|+.+.+.+.++.+++ +++++++.-+.-                                    
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~h~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~   92 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCILAAATLEGGKESAKAVMTAVAS   92 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTTSTTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence            3456788899999999999999988877776 777887755430                                    


Q ss_pred             ----CC--------------h-------------------------------HHHHHcCCCcccEEEEEECCeEEEEEEc
Q 030165          136 ----DS--------------P-------------------------------NIATKYGIRSIPTVLFFKNGEKKESIIG  166 (182)
Q Consensus       136 ----~~--------------~-------------------------------~l~~~~~I~~iPTl~~f~~G~~v~~~~G  166 (182)
                          ..              .                               ..++++||.++||+++  ||+.+..+.|
T Consensus        93 ~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~l~~~~~~~~v~~~~~~a~~~GV~gtPtf~i--ng~~~~~~s~  170 (182)
T 3gn3_A           93 HREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEAFANPELEHAVKWHTKYARQNGIHVSPTFMI--NGLVQPGMSS  170 (182)
T ss_dssp             TGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHHHHCGGGHHHHHHHHHHHHHHTCCSSSEEEE--TTEECTTCCT
T ss_pred             cCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHHhcChHHHHHHHHHHHHHHHCCCCccCEEEE--CCEEccCCCC
Confidence                00              0                               1335579999999988  9987766788


Q ss_pred             CCCHHHHHHHH
Q 030165          167 AVPKSTLSSTL  177 (182)
Q Consensus       167 ~~~~~~l~~~l  177 (182)
                      ..+.+++.++|
T Consensus       171 ~~~~e~w~~~l  181 (182)
T 3gn3_A          171 GDPVSKWVSDI  181 (182)
T ss_dssp             TSCHHHHHHHH
T ss_pred             CCCHHHHHHHh
Confidence            88988888876

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=97.79  E-value=2.5e-05  Score=62.83  Aligned_cols=79  Identities=19%  Similarity=0.354  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC------------------CChHHHHHcCCCcc--cEEEE
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD------------------DSPNIATKYGIRSI--PTVLF  154 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d------------------~~~~l~~~~~I~~i--PTl~~  154 (182)
                      ...|..|+.++|++|......|+++..++.  +..+.++.+                  +++.+.+++|.+++  |.+++
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~~--vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~I  120 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKGD--VVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL  120 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHTS--SEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccCC--eeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEE
Confidence            357888999999999999999999987654  322223322                  12347788999998  99777


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                        ||+.  .+.|. ++++|.+.|.+.
T Consensus       121 --ng~~--~v~G~-d~~~l~~~l~~~  141 (270)
T 2axo_A          121 --NGRD--HVKGA-DVRGIYDRLDAF  141 (270)
T ss_dssp             --TTTE--EEETT-CHHHHHHHHHHH
T ss_pred             --CCEE--eecCC-CHHHHHHHHHHh
Confidence              8874  24454 678888877653

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.78  E-value=4.8e-05  Score=54.43  Aligned_cols=71  Identities=14%  Similarity=0.271  Sum_probs=44.8

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-H----HHHHcCCCcccEEEEEECC
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-N----IATKYGIRSIPTVLFFKNG  158 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-~----l~~~~~I~~iPTl~~f~~G  158 (182)
                      ++|++ +.+..+  |+.|+.+||++|++....|++.. .+......+.+|.+.+. +    +.+..|.+++|.+++  +|
T Consensus         5 ~~~~~-ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~-~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~G   78 (127)
T 3l4n_A            5 KEYSL-ILDLSP--IIIFSKSTCSYSKGMKELLENEY-QFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--NG   78 (127)
T ss_dssp             HHHHH-HHTSCS--EEEEECTTCHHHHHHHHHHHHHE-EEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TT
T ss_pred             HHHHH-HHccCC--EEEEEcCCCccHHHHHHHHHHhc-ccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--CC
Confidence            34666 444444  67799999999999998888731 01222444444444332 2    334569999999955  88


Q ss_pred             eE
Q 030165          159 EK  160 (182)
Q Consensus       159 ~~  160 (182)
                      +.
T Consensus        79 ~~   80 (127)
T 3l4n_A           79 VS   80 (127)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.76  E-value=4e-05  Score=55.43  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=42.3

Q ss_pred             cEEEEEEc----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEE
Q 030165           96 PVLVEFWA----PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        96 ~vlV~F~a----~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      .|+|+.++    +||++|++....|++.      .+.|..+|+++++++    .+..|..++|.++  .||+.+
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf--I~G~~i  101 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLW--VDGELV  101 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--ETTEEE
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHCCCCcCEEE--ECCEEE
Confidence            45555554    9999999999888765      367788888876654    4446889999864  488643

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.67  E-value=0.00013  Score=56.82  Aligned_cols=58  Identities=14%  Similarity=0.300  Sum_probs=44.2

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEECCeE
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP---NIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~---~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      ...++.|+.+||++|++.+..|++.      .+.+-.+|++.++   ++.+.+|..++|++++  +|+.
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~--~g~~  229 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKH  229 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            4457788999999999999888864      2555567776543   4788899999999854  7854

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.64  E-value=0.00019  Score=47.23  Aligned_cols=56  Identities=21%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             EEEEEcC----CChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----CCh----HHHHHcCCC-----cccEEEEEECCe
Q 030165           98 LVEFWAP----WCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----DSP----NIATKYGIR-----SIPTVLFFKNGE  159 (182)
Q Consensus        98 lV~F~a~----wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----~~~----~l~~~~~I~-----~iPTl~~f~~G~  159 (182)
                      ++.|+.+    ||++|++....|++.      .+.+-.+|++     +++    ++.+.+|..     ++|++++ .||+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~g~   74 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGS   74 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-ECCE
Confidence            5678899    999999999888774      3667777777     554    366778888     8998754 3776


Q ss_pred             E
Q 030165          160 K  160 (182)
Q Consensus       160 ~  160 (182)
                      .
T Consensus        75 ~   75 (87)
T 1aba_A           75 H   75 (87)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.62  E-value=0.00037  Score=54.39  Aligned_cols=88  Identities=14%  Similarity=0.253  Sum_probs=65.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++.+|++|| +.||+.|......|.+...++.. ++.++.|.+|.                            ..++++
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  134 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIAR  134 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHHH
Confidence            4689999999 99999999999999999999875 48888887643                            346889


Q ss_pred             HcCCC----ccc---EEEEEECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          143 KYGIR----SIP---TVLFFKNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~----~iP---Tl~~f~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      .||+-    +++   |++|-++|++.......    .+.+++.+.|+.+
T Consensus       135 ~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          135 SYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            99983    344   44444688877655322    3567777777654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.59  E-value=0.00023  Score=49.17  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeEE
Q 030165          104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus       104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      |||++|++....|++.      .+.+-.+|+++++++    .+..|...+|.+++  ||+.+
T Consensus        31 p~Cp~C~~ak~~L~~~------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi--~g~~i   84 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI--GGEFF   84 (109)
T ss_dssp             BSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE--TTEEE
T ss_pred             CCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE--CCEEE
Confidence            5999999999988875      366777888776554    34458999997644  88644

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.55  E-value=0.00032  Score=46.80  Aligned_cols=56  Identities=9%  Similarity=0.122  Sum_probs=40.8

Q ss_pred             EEEEEcCCChhh------hhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcC--CCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPC------RMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYG--IRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C------~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~--I~~iPTl~~f~~G~~v  161 (182)
                      ++.|+.+||++|      +.....|++.      ++.+..+|++.+++    +.+.+|  ...+|.+++  ||+.+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi--~g~~i   71 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GNHYC   71 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TTEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE--CCEEE
Confidence            667899999999      6666665542      37788889887744    455788  789998754  88653

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.53  E-value=0.0012  Score=49.92  Aligned_cols=86  Identities=9%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CCCcEEEEEE-cCCChhhh-hhhHHHHHHHHHh-cC-ce-EEEEEeCC----------------------CChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCR-MIAPAIEELAKEY-AG-KV-ACFKLNTD----------------------DSPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~-~~~p~l~~~a~~~-~~-~v-~~~~vd~d----------------------~~~~l~~~~~  145 (182)
                      .++.+|++|| ..||+.|. ...+.|.+.+.++ .. .+ .++.|..|                      .+.++++.||
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yG  121 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMN  121 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCceEEEeCchHHHHHhC
Confidence            3567777776 78999999 8889999988888 43 35 36666653                      3446888898


Q ss_pred             CC-----------cccEEEEEECCeEEEEEEcC-------------CCHHHHHHHHH
Q 030165          146 IR-----------SIPTVLFFKNGEKKESIIGA-------------VPKSTLSSTLD  178 (182)
Q Consensus       146 I~-----------~iPTl~~f~~G~~v~~~~G~-------------~~~~~l~~~l~  178 (182)
                      +.           .....+++.+|++...+...             ...+++.++|+
T Consensus       122 v~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~  178 (182)
T 1xiy_A          122 MLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLK  178 (182)
T ss_dssp             CEEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred             CceeccccCCCCceEEEEEEEcCCEEEEEEEeCCcccccccCcccCCCHHHHHHHHH
Confidence            73           24455666899888777543             34666666665

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.51  E-value=0.00021  Score=49.64  Aligned_cols=56  Identities=13%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             EEEEEc-----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWA-----PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA----TKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a-----~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~----~~~~I~~iPTl~~f~~G~~v  161 (182)
                      ||.|..     +||++|+.....|++.      .+.+..+|++.++++.    +..|...+|.+++  ||+.+
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~~------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi--~g~~i   82 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHKH------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV--SGELI   82 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--TTEEE
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHHc------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE--CCEEE
Confidence            445777     9999999999888764      3667778887766543    3458899999854  88643

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.00038  Score=48.22  Aligned_cols=57  Identities=16%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             EEEEEEcCCChhhh------hhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHc--------CCCcccEEEEEECC
Q 030165           97 VLVEFWAPWCGPCR------MIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKY--------GIRSIPTVLFFKNG  158 (182)
Q Consensus        97 vlV~F~a~wC~~C~------~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~--------~I~~iPTl~~f~~G  158 (182)
                      .|+.|+.+||++|+      +....|++    +  .+.+..+|++.+++    +.+++        |...+|.+++  +|
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~----~--gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi--~g   80 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA----N--KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFN--GD   80 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEE--TT
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH----c--CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEE--CC
Confidence            36778999999999      55555554    2  37888899988765    34444        7778998754  88


Q ss_pred             eEE
Q 030165          159 EKK  161 (182)
Q Consensus       159 ~~v  161 (182)
                      +.+
T Consensus        81 ~~i   83 (111)
T 2ct6_A           81 RYC   83 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.00055  Score=55.47  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=71.2

Q ss_pred             ccCccEEc-ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHH--HHcC-----
Q 030165           74 AVNEVQVV-TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIA--TKYG-----  145 (182)
Q Consensus        74 ~~~~v~~l-~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~--~~~~-----  145 (182)
                      ....+..+ +.++++..+...+.++++.|...     ....+.|++++.++.+.+.|+.++.++...+.  .+|+     
T Consensus       141 ~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~  215 (298)
T 3ed3_A          141 IRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ-----DKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPE  215 (298)
T ss_dssp             CCCCEEECSCGGGHHHHHTSCSSEEEEEEESS-----SSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHH
T ss_pred             cccccEEcCCHHHHHHHHhcCCceEEEEEcCC-----CcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcc
Confidence            34556777 45778875555567778877432     24568999999999999999999865443322  2333     


Q ss_pred             C-------------CcccEEEEEEC-CeEEEEEE-cCCCHHHHHHHHHH
Q 030165          146 I-------------RSIPTVLFFKN-GEKKESII-GAVPKSTLSSTLDK  179 (182)
Q Consensus       146 I-------------~~iPTl~~f~~-G~~v~~~~-G~~~~~~l~~~l~~  179 (182)
                      |             ...|++++|++ ++....+. +..+.++|.+||.+
T Consensus       216 i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~  264 (298)
T 3ed3_A          216 IFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRD  264 (298)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHH
T ss_pred             hhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHh
Confidence            2             67999999974 45555666 46899999999984

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0011  Score=46.64  Aligned_cols=50  Identities=22%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceE---EEEEeCCCChHH----HHHcCCCcccEEEEEECCeEE
Q 030165          104 PWCGPCRMIAPAIEELAKEYAGKVA---CFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus       104 ~wC~~C~~~~p~l~~~a~~~~~~v~---~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      |||++|++....|++..      +.   +..+|+++++++    .+..|...+|.+++  ||+.+
T Consensus        29 p~Cp~C~~ak~lL~~~g------v~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI--~g~~i   85 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQG------VDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV--NKEFI   85 (121)
T ss_dssp             BCTTHHHHHHHHHHHHT------BCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE--TTEEE
T ss_pred             CCCccHHHHHHHHHHcC------CCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            59999999999998863      44   677888777654    44458899999854  88643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.22  E-value=0.0032  Score=48.91  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             EEcChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           79 QVVTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        79 ~~l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..++.+++...+. ...+++.+.|....+.       ...+++.++.  ..+.+..++ +.+.+++++|||+++|++++|
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~al~f~~~~~~-------~~~~~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~  212 (244)
T 3q6o_A          141 EPAXLEEIDGFFARNNEEYLALIFEXGGSY-------LAREVALDLSQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLL  212 (244)
T ss_dssp             SCCCHHHHHTHHHHCCCSEEEEEEECTTCC-------HHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEE
T ss_pred             ccccHHHHHHHhhcCCCceEEEEEEECCcc-------hHHHHHHHhccCCceEEEEEe-CchHHHHHHcCCCCCCeEEEE
Confidence            3456677766544 3456777888877543       3334444444  336655444 556899999999999999988


Q ss_pred             E-CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 K-NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~-~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      . ||+......+..+.+.+..+|+++.
T Consensus       213 ~~~g~~~~~~~~~~~r~~~~~~l~~~~  239 (244)
T 3q6o_A          213 FRNGSVSRVPVLMESRSFYTAYLQRLS  239 (244)
T ss_dssp             ETTSCEEECCCSSSSHHHHHHHHHTC-
T ss_pred             eCCCCeEeeccccccHHHHHHHHHhCC
Confidence            6 6665555445556777777777653

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=97.00  E-value=0.0008  Score=54.13  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL  132 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~v  132 (182)
                      .++.+++.|+.+.||+|+++.+.+++..++  ..++++.+
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~--~~Vr~i~~  183 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE--NTVRMVVV  183 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH--CEEEEEEC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC--CcEEEEEe
Confidence            367899999999999999999999976654  34555543

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=96.97  E-value=0.0081  Score=44.87  Aligned_cols=76  Identities=5%  Similarity=-0.002  Sum_probs=54.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceE-EEEEeCC-----------------------CChHHHHHcCC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVA-CFKLNTD-----------------------DSPNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~-~~~vd~d-----------------------~~~~l~~~~~I  146 (182)
                      .++.+|++|| ..||+.|....+.|.+.+.++.. .+. ++.|..|                       .+.++++.||+
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv  120 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGT  120 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTC
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCC
Confidence            3677888888 78999999999999998888763 353 6666653                       34468888887


Q ss_pred             C-----------cccEEEEEECCeEEEEEEcCC
Q 030165          147 R-----------SIPTVLFFKNGEKKESIIGAV  168 (182)
Q Consensus       147 ~-----------~iPTl~~f~~G~~v~~~~G~~  168 (182)
                      .           ..-..+++++|++........
T Consensus       121 ~~~~~~~g~g~~~~R~tfvIddG~V~~~~v~~~  153 (171)
T 2xhf_A          121 ELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEPD  153 (171)
T ss_dssp             BCCCHHHHSSCCBCCEEEEEETTEEEEEEETTS
T ss_pred             ceeccccCCCcceEEEEEEEeCCEEEEEEEeCC
Confidence            4           223445557998888777643

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=96.74  E-value=0.0077  Score=45.51  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          140 IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       140 l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+.++||.++||+++  ||+   .+.|..+.+.|.++|++..
T Consensus       159 ~a~~~Gv~G~Ptfvi--~g~---~~~G~~~~~~l~~~l~~~~  195 (203)
T 2imf_A          159 AAIERKVFGVPTMFL--GDE---MWWGNDRLFMLESAMGRLC  195 (203)
T ss_dssp             HHHHTTCCSSSEEEE--TTE---EEESGGGHHHHHHHHHHHH
T ss_pred             HHHHCCCCcCCEEEE--CCE---EEECCCCHHHHHHHHhccc
Confidence            456689999999988  886   5789999999999998753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.48  E-value=0.0085  Score=52.28  Aligned_cols=94  Identities=12%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             cEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           78 VQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        78 v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      +..++.++++..+.. .++++++.|....       .....+++.++..  .+.+..+ .+.+.+++++|||+.+|++++
T Consensus       140 l~~it~~~l~~~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v-~~~~~~l~~kfgV~~~Pslvl  211 (519)
T 3t58_A          140 LEPAKLNDIDGFFTRNKADYLALVFERED-------SYLGREVTLDLSQYHAVAVRRV-LNTESDLVNKFGVTDFPSCYL  211 (519)
T ss_dssp             CSBCCHHHHTTGGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEE-ETTCHHHHHHHTCCCSSEEEE
T ss_pred             cCcCCHHHHHHHhccCCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEe-cCchHHHHHHcCCCCCCeEEE
Confidence            345666777664433 4567888888764       3355666666653  3665444 456789999999999999999


Q ss_pred             EECCeEEEEEEcCC-CHHHHHHHHHH
Q 030165          155 FKNGEKKESIIGAV-PKSTLSSTLDK  179 (182)
Q Consensus       155 f~~G~~v~~~~G~~-~~~~l~~~l~~  179 (182)
                      |+.++...++.... ..+.+..+|++
T Consensus       212 ~~~nGk~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          212 LLRNGSVSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             EETTSCEEECCCSSCSHHHHHHHHTT
T ss_pred             EeCCCceeecccccccHHHHHHHHHH
Confidence            97555444444333 33444455443

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=96.36  E-value=0.023  Score=40.09  Aligned_cols=62  Identities=10%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             EEEEEEcCCChhhhhhhH--HHHHHHHHhcCceEEEEEeCCCChH----HHHHc--------CCCcccEEEEEECCeEEE
Q 030165           97 VLVEFWAPWCGPCRMIAP--AIEELAKEYAGKVACFKLNTDDSPN----IATKY--------GIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p--~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~--------~I~~iPTl~~f~~G~~v~  162 (182)
                      ||+.|++++|++|+....  ..+.+.+.  .+|.|-.+|++.+++    +.++.        |...+|.+++  +|+.+.
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~--kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi--~~~~iG   76 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA--NKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFN--ESQYRG   76 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH--TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEE--TTEEEE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH--CCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEE--CCEEEe
Confidence            467788999999953332  12223222  248899999987754    45567        7788886544  775443

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=95.97  E-value=0.0056  Score=51.10  Aligned_cols=60  Identities=20%  Similarity=0.357  Sum_probs=38.1

Q ss_pred             EEEEEcCCChhhhhhhH-HHHHHHHHhcCceEEEEEeC-CCC----hHHHHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAP-AIEELAKEYAGKVACFKLNT-DDS----PNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p-~l~~~a~~~~~~v~~~~vd~-d~~----~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      |+.|..+||++|++... .|++..-.|. .+.++.+|. ++.    ..+.+..|.+.+|.+++  +|+.
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~-eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI--~Gk~  328 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRS-KVLVLQLNDMKEGADIQAALYEINGQRTVPNIYI--NGKH  328 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTT-TEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEE--TTEE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcc-eEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEE--CCEE
Confidence            55589999999998875 5655433332 244444432 222    23556689999998754  8864

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=95.60  E-value=0.24  Score=33.78  Aligned_cols=83  Identities=12%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYA--GKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~--~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ....|.+..-+..+.....+.++.+.+.  +...+-.+|+.+++++++.++|-++||++=..- ..+.+++|..-.++++
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P-~P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGP-GSRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEES-SSCEEEESSCHHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCC-CCceEEeChHHHHHHH
Confidence            4447778888888887777888766554  468888999999999999999999999987754 3457889988889999


Q ss_pred             HHHHHH
Q 030165          175 STLDKY  180 (182)
Q Consensus       175 ~~l~~~  180 (182)
                      .|.-+.
T Consensus        92 ~wwprW   97 (105)
T 1t4y_A           92 NQLPQW   97 (105)
T ss_dssp             HHHHHH
T ss_pred             HHhHHH
Confidence            987653

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=95.54  E-value=0.066  Score=37.49  Aligned_cols=68  Identities=25%  Similarity=0.382  Sum_probs=44.1

Q ss_pred             hhhHHHHHHcCCCcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCce-EEEEEeCCCChHH----HHHcCCCcccEE
Q 030165           83 DSSWENLVISSENPVLVEFWA-----PWCGPCRMIAPAIEELAKEYAGKV-ACFKLNTDDSPNI----ATKYGIRSIPTV  152 (182)
Q Consensus        83 ~~~~~~~~~~~~~~vlV~F~a-----~wC~~C~~~~p~l~~~a~~~~~~v-~~~~vd~d~~~~l----~~~~~I~~iPTl  152 (182)
                      .+..++++ ++++  ||.|..     |.|++|++....|.+.      .+ .|..+|+++++++    .+.-|-+.+|-+
T Consensus        10 ~e~i~~~i-~~~~--VvvF~Kgt~~~P~C~fc~~ak~lL~~~------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqI   80 (118)
T 2wul_A           10 AEQLDALV-KKDK--VVVFLKGTPEQPQCGFSNAVVQILRLH------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQV   80 (118)
T ss_dssp             HHHHHHHH-HHSS--EEEEESBCSSSBSSHHHHHHHHHHHHT------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHHH-hcCC--EEEEEcCCCCCCCCHHHHHHHHHHHHh------CCcCeEeecccCCHHHHHHHHHhccCCCCCeE
Confidence            44555533 4343  344654     5799999998887653      13 3667788877664    445577889988


Q ss_pred             EEEECCeEE
Q 030165          153 LFFKNGEKK  161 (182)
Q Consensus       153 ~~f~~G~~v  161 (182)
                      ++  +|+-+
T Consensus        81 FI--~g~~I   87 (118)
T 2wul_A           81 YL--NGEFV   87 (118)
T ss_dssp             EE--TTEEE
T ss_pred             eE--CCEEE
Confidence            55  88654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.04  E-value=0.035  Score=48.67  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC---h----HHHHHcCCCcccEEEEEE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS---P----NIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~---~----~l~~~~~I~~iPTl~~f~  156 (182)
                      +.+++.+ ...+  ++.|+.+||++|++....|++..      +.+-.+|++..   .    .+.+..+...+|.+  |-
T Consensus         9 ~~v~~~i-~~~~--v~vy~~~~Cp~C~~~k~~L~~~~------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v--~i   77 (598)
T 2x8g_A            9 QWLRKTV-DSAA--VILFSKTTCPYCKKVKDVLAEAK------IKHATIELDQLSNGSAIQKCLASFSKIETVPQM--FV   77 (598)
T ss_dssp             HHHHHHH-HHCS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE--EE
T ss_pred             HHHHHHh-ccCC--EEEEECCCChhHHHHHHHHHHCC------CCcEEEEcccCcchHHHHHHHHHHhCCceeCEE--EE
Confidence            4455533 3333  66699999999999998888652      34445555432   2    23445789999987  44


Q ss_pred             CCeEEE
Q 030165          157 NGEKKE  162 (182)
Q Consensus       157 ~G~~v~  162 (182)
                      +|+.+.
T Consensus        78 ~g~~ig   83 (598)
T 2x8g_A           78 RGKFIG   83 (598)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            886543

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=94.84  E-value=0.11  Score=36.16  Aligned_cols=42  Identities=5%  Similarity=-0.012  Sum_probs=29.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh-------HHHHHcC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP-------NIATKYG  145 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~-------~l~~~~~  145 (182)
                      +..|+.++|+.|++....|++.      .+.+-.+|+++++       ++.+++|
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~~~~~~~~l~~~~~~~g   55 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH------GIDYTFHDYKKEGLDAETLDRFLKTVP   55 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCEEEEEHHHHCCCHHHHHHHHHHSC
T ss_pred             EEEEECCCChHHHHHHHHHHHc------CCcEEEEeeeCCCCCHHHHHHHHHHcC
Confidence            6678899999999998888774      2555566664332       3456677

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=94.19  E-value=0.058  Score=42.02  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +.+.++||.++||+++  ||+.  .+.|..+.+.|.+.|++++
T Consensus       174 ~~a~~~Gv~GvPtfvv--~g~~--~v~Ga~~~e~~~~~i~~~~  212 (239)
T 3gl5_A          174 REAAQLGATGVPFFVL--DRAY--GVSGAQPAEVFTQALTQAW  212 (239)
T ss_dssp             HHHHHTTCCSSSEEEE--TTTE--EEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCeeCeEEE--CCcE--eecCCCCHHHHHHHHHHHH
Confidence            4577899999999987  8863  4579999999999999875

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=93.99  E-value=0.13  Score=35.27  Aligned_cols=33  Identities=18%  Similarity=0.107  Sum_probs=24.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD  136 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~  136 (182)
                      ++.|+.++|+.|++....|++.      .+.+-.+|+++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~------gi~~~~~di~~   34 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH------KVAYDFHDYKA   34 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT------TCCEEEEEHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC------CCceEEEeecC
Confidence            4568899999999998888763      36666677653

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=92.18  E-value=0.14  Score=38.50  Aligned_cols=36  Identities=19%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +.+.++||.++||+++  ||+   .+.|..+.+.|.++|.+
T Consensus       164 ~~a~~~Gv~GvPtfvv--~g~---~~~G~~~~~~l~~~l~~  199 (202)
T 3fz5_A          164 EDAVARGIFGSPFFLV--DDE---PFWGWDRMEMMAEWIRT  199 (202)
T ss_dssp             HHHHHTTCCSSSEEEE--TTE---EEESGGGHHHHHHHHHT
T ss_pred             HHHHHCCCCcCCEEEE--CCE---EEecCCCHHHHHHHHhc
Confidence            4677899999999988  885   67899999999988864

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=91.76  E-value=0.99  Score=31.07  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             ceEEEEEeCCCCh----------HHHHHcCCCcccEEEEEECCeEEEEEEcC-CCHHHHHHHHH
Q 030165          126 KVACFKLNTDDSP----------NIATKYGIRSIPTVLFFKNGEKKESIIGA-VPKSTLSSTLD  178 (182)
Q Consensus       126 ~v~~~~vd~d~~~----------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~-~~~~~l~~~l~  178 (182)
                      .+.+...|...++          ++.+++|+..+|.+++  ||+.+..  |. .+.++|.+|+.
T Consensus        40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DGevv~~--G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DGETVMA--GRYPKRAELARWFG   99 (110)
T ss_dssp             TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TTEEEEE--SSCCCHHHHHHHHT
T ss_pred             CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEEe--ccCCCHHHHHHHhC
Confidence            3888888988777          4678899999999888  9987543  54 67899999874

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=91.47  E-value=0.33  Score=33.81  Aligned_cols=36  Identities=25%  Similarity=0.574  Sum_probs=29.5

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT  134 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~  134 (182)
                      |.+++.|..|.|+-|+.....++    .++++..++.||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~----~ledeY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVE----ELKSEYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHH----TTTTTEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHHH----HhhccccEEEEEe
Confidence            56899999999999999888884    4456667788886

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=91.28  E-value=0.24  Score=34.92  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=26.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS  137 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~  137 (182)
                      ++.|+.++|+.|++....|++.      .+.+-.+|++++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH------EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCceEEEEccCC
Confidence            6678999999999999888763      366667777654

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=91.12  E-value=0.71  Score=31.60  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=46.1

Q ss_pred             ChhhhhhhHHHHHHHHHhc----CceEEEEEeCCCCh----------HHHHHcCCCcccEEEEEECCeEEEEEEcC-CCH
Q 030165          106 CGPCRMIAPAIEELAKEYA----GKVACFKLNTDDSP----------NIATKYGIRSIPTVLFFKNGEKKESIIGA-VPK  170 (182)
Q Consensus       106 C~~C~~~~p~l~~~a~~~~----~~v~~~~vd~d~~~----------~l~~~~~I~~iPTl~~f~~G~~v~~~~G~-~~~  170 (182)
                      ||+-  ..|.+-+++..+.    ..+.+...|...++          ++.+++|+.++|.+++  ||+.+.  .|. .+.
T Consensus        21 CG~~--vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~V--DGevv~--~G~yPt~   94 (106)
T 3ktb_A           21 CGTN--INPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLV--DGEIAV--SQTYPTT   94 (106)
T ss_dssp             SSSC--CCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEE--TTEEEE--CSSCCCH
T ss_pred             cCCC--CCHHHHHHHHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEE--eccCCCH
Confidence            4553  3455544443321    24788888888777          4667899999999888  998744  354 678


Q ss_pred             HHHHHHHH
Q 030165          171 STLSSTLD  178 (182)
Q Consensus       171 ~~l~~~l~  178 (182)
                      ++|.+|+.
T Consensus        95 eEl~~~lg  102 (106)
T 3ktb_A           95 KQMSEWTG  102 (106)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999873

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.43  E-value=0.9  Score=39.09  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE-EE
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK-KE  162 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~-v~  162 (182)
                      +++...+..-.++|.+.++.+.|..|..+...++++++.. +++.+...+ ++  .       ...|++.+.++|+. -.
T Consensus         8 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~-~~--~-------~~~p~~~~~~~~~~~~i   76 (521)
T 1hyu_A            8 TQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELS-DKVTFKEDN-TL--P-------VRKPSFLITNPGSQQGP   76 (521)
T ss_dssp             HHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEECT-TS--S-------SCSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEcC-Cc--c-------cCCCEEEEecCCCcceE
Confidence            3444545556788888888888999999999999997654 467764322 11  0       67899999977753 24


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|..++
T Consensus        77 ~f~g~p~g~e~~s~~~~l~   95 (521)
T 1hyu_A           77 RFAGSPLGHEFTSLVLALL   95 (521)
T ss_dssp             EEESCCCGGGHHHHHHHHH
T ss_pred             EEeccCcchhHHHHHHHHH
Confidence            8888777777877777654

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=90.42  E-value=0.41  Score=36.49  Aligned_cols=41  Identities=24%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       138 ~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      .+.+.++||.++||+++=.+|+ -..+.|..+.+.|.++|.+
T Consensus       172 ~~~a~~~gv~G~Ptfvv~~~g~-~~~~~G~~~~~~l~~~l~~  212 (226)
T 1r4w_A          172 TGAACKYGAFGLPTTVAHVDGK-TYMLFGSDRMELLAYLLGE  212 (226)
T ss_dssp             HHHHHHTTCCSSCEEEEEETTE-EEEEESTTCHHHHHHHHTC
T ss_pred             HHHHHHCCCCCCCEEEEeCCCC-cCceeCCCcHHHHHHHhcC
Confidence            3467889999999997755554 2367799999999888864

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=87.75  E-value=0.5  Score=32.69  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS  137 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~  137 (182)
                      +..|+.++|+.|++....|++.      .+.+-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH------DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT------TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence            5678899999999999888753      366777777654

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=85.91  E-value=1.1  Score=34.36  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          139 NIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       139 ~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      +.+.++||.++||+++=.||+ -..+.|....+.|.++|.+
T Consensus       173 ~~a~~~Gv~GvPtfvv~~~g~-~~~f~G~drl~~l~~~L~~  212 (234)
T 3rpp_A          173 EAACRYGAFGLPITVAHVDGQ-THMLFGSDRMELLAHLLGE  212 (234)
T ss_dssp             HHHHHTTCSSSCEEEEEETTE-EEEEESSSCHHHHHHHHTC
T ss_pred             HHHHHcCCCCCCEEEEeCCCC-cCceeCccCHHHHHHHhcc
Confidence            466789999999998733675 2467899999999988864

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=85.58  E-value=0.28  Score=36.98  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=18.3

Q ss_pred             ChHHHHHcCCCcccEEEEEECCeEE
Q 030165          137 SPNIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus       137 ~~~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      +...++.+||+++|++++  ||+..
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~   61 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQ   61 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEE
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEe
Confidence            345788999999999976  88753

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=84.49  E-value=0.27  Score=33.61  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHH-hcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKE-YAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~-~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ..++..|-+-.-+..+.....+.++.+. +++...+-.||+.+++++++.++|-++||++
T Consensus         7 ~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~PelAe~~~IvAtPTLi   66 (105)
T 1wwj_A            7 TYVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKILATPTLA   66 (105)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCSCCTTCEEECHHHHG
T ss_pred             ceEEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCHhHHhHCCeEEechhh
Confidence            4567777776788887777777776544 4667888899999999999999999999975

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=83.47  E-value=1.6  Score=30.16  Aligned_cols=36  Identities=19%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP  138 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~  138 (182)
                      ++..|+.++|+.|++....|++-      .+.+-.+|+.+++
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~~------gi~~~~~di~~~~   39 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDDL------AWDYDAIDIKKNP   39 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHH------TCCEEEEETTTSC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHc------CCceEEEEeccCc
Confidence            46678899999999999888754      2666677776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	8e-31
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	6e-29
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-28
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-27
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	1e-26
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	2e-26
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-25
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-22
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-22
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	4e-22
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	5e-22
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	7e-22
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	7e-21
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-20
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	3e-20
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-19
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	2e-19
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	6e-19
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	7e-18
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-17
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	3e-17
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	5e-17
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	7e-17
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	1e-16
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	1e-16
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-16
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	3e-16
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	5e-16
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	2e-15
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	4e-15
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	2e-14
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	7e-14
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	6e-13
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	1e-11
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	1e-11
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	3e-11
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-10
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	2e-10
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	1e-08
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	2e-07
d1knga_	144	c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY	3e-07
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	1e-05
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	3e-05
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	3e-04

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 8e-31
 Identities = 50/106 (47%), Positives = 72/106 (67%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD 135
           +++  +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD  +
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score =  101 bits (254), Expect = 6e-29
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 77  EVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNT 134
             Q V  S+ ++ +    +  +L+                I EL +E+          + 
Sbjct: 12  GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL 71

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           + S  I  ++ +R  P  L F +G+ + ++ G  P + L + +   V+
Sbjct: 72  EQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 119

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 3e-28
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 77  EVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNT 134
               V++S  ++ +  + +  VL+                I EL +E+          + 
Sbjct: 18  GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           + S  I  ++G+   P  L F  G  +  + G  P + L + +   VE
Sbjct: 78  EQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 96.5 bits (239), Expect = 5e-27
 Identities = 62/105 (59%), Positives = 86/105 (81%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           E   V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           SPN+A++YGIRSIPT++ FK G+K E+IIGAVPK+T+  T++KY+
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 95.7 bits (237), Expect = 1e-26
 Identities = 37/104 (35%), Positives = 59/104 (56%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D +
Sbjct: 4   VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN 63

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           P    KY +  +P +   K  +  +S  G + K  L S LD ++
Sbjct: 64  PTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 94.9 bits (235), Expect = 2e-26
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
              +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++
Sbjct: 2   TMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           P   +++GI SIPT++ FK GE  + +IG  PK  L + L   ++
Sbjct: 61  PETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 93.1 bits (230), Expect = 1e-25
 Identities = 74/104 (71%), Positives = 93/104 (89%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           VQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD++
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 85.7 bits (211), Expect = 1e-22
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTD 135
           V VV   ++  +V+     VL+EF+APWCG C+ +AP  EEL   YA         +   
Sbjct: 4   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 63

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESI--IGAVPKSTLSSTLDK 179
           D+        I+  PT+  +  G K + +   G+     L   + +
Sbjct: 64  DATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 84.4 bits (208), Expect = 3e-22
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 74  AVNEVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
            V +V  V   ++  +V ++ + PV+++ +  WCGPC+ +AP  E+LA+EY   +     
Sbjct: 4   IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLD 63

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 173
              ++  +A + GIR +PT    K       + GA     L
Sbjct: 64  CNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLL 104

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 83.2 bits (205), Expect = 4e-22
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 97  VLVE-FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF 155
           V +E F +P C  C M    ++E  KE+  K+   K++       A +YG+ ++P +   
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 156 KNGEKKESIIGAVPKSTLSSTLDKYVE 182
                    +GA  +  L   ++  +E
Sbjct: 63  GVVR----FVGAPSREELFEAINDEME 85

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 5e-22
 Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            Q+ + ++++  + ++ +  V+V+F A WCGPC+MI P    L+++Y+  +   +++ DD
Sbjct: 3   KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDD 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             ++A++  ++ +PT  FFK G+K     GA  K  L +T+++ V
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 7e-22
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 79  QVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
            V +D  ++  +  + +   +V+F    CGPC  IAPA          +    +++    
Sbjct: 5   PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS-MSNKYPQAVFLEVDVHQC 63

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
              A    I + PT  FF+N  + +   GA     L   + +++E
Sbjct: 64  QGTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHLE 107

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 7e-21
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-DD 136
           V  +   + + +V   +  VLV ++APWCG C+ +AP  +ELA  YA   +   +   D 
Sbjct: 14  VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH 73

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESII--GAVPKSTLSSTLDK 179
           + N      I   PT++ +  G+K ES++  G+    +L   + +
Sbjct: 74  TENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 118

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-20
 Identities = 13/96 (13%), Positives = 38/96 (39%)

Query: 87  ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGI 146
           + ++   +  V++ F   W   C  +   +  +A++       + ++  + P+    Y +
Sbjct: 15  QAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL 74

Query: 147 RSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
               TV+FF   +     +G    + ++  ++   E
Sbjct: 75  YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQE 110

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 79.1 bits (194), Expect = 3e-20
 Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 4/109 (3%)

Query: 76  NEVQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
           + + + + ++W+  +        P++V+F A WCGPC+MIAP  E L+ +YAGKV   K+
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
           + D    +A   GI ++PT   +K+G K + ++GA  +  L + + K+ 
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 2e-19
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 71  AREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF 130
           A E  + V V+  S++    +++   +LVEF+APWCG C+ +AP   + A +   + +  
Sbjct: 2   APEEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 131 KL---NTDDSPNIATKYGIRSIPTVLFFKNGEKKESI--IGAVPKSTLSSTLDKYV 181
           +L   +  +  ++A +YG+R  PT+ FF+NG+               + + L K  
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 76.8 bits (188), Expect = 2e-19
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 78  VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS 137
           V++VT  +  + +IS    V+V+F+A WCGPC+ IAP  EE +K Y   V     + D+ 
Sbjct: 2   VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKV-DVDEV 60

Query: 138 PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
             +  K  I S+PT   +KNG   ++++GA   S L   ++KY
Sbjct: 61  SEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.6 bits (193), Expect = 6e-19
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 76  NEVQVVTDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
             V  +         I        ++V  +      C  +  ++E LA EY       K+
Sbjct: 99  GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVK-FCKI 157

Query: 133 NTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP-------KSTLSSTLDKY 180
              ++     ++    +PT+L +K GE   + I            + + S L++Y
Sbjct: 158 RASNTGAGD-RFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 72.9 bits (178), Expect = 7e-18
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 78  VQVVTDSSWE---NLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT 134
           +   T  +W+        S+  ++V+F A WC PC+MIAP   ELAK++         + 
Sbjct: 7   IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV-DV 65

Query: 135 DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
           D+   +A ++ + ++PT +F K+G+  +  +GA  K  L + + K+
Sbjct: 66  DELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKH 110

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-17
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 15/106 (14%)

Query: 77  EVQVVTDSSWENLVISSEN-PVLVEFWA-------PWCGPCRMIAPAIEELAKEYAGKVA 128
           EV V     +   V       +   F          WC  C    P + E  K  +    
Sbjct: 3   EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 62

Query: 129 CFKLNTDDSP-------NIATKYGIRSIPTVLFFKNGEKKESIIGA 167
                  + P       +      + ++PT+L +   +K       
Sbjct: 63  FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECL 108

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.5 bits (174), Expect = 3e-17
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 78  VQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
            QV   +  +  +  +    V+++F+A WCGPC+MI+P + EL+ ++A  V   K++ D+
Sbjct: 8   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
             +IA +Y I S+PT +F KNG K E   GA  K  L   +   +
Sbjct: 68  CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAK-RLEDVIKANI 111

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.7 bits (172), Expect = 5e-17
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 71  AREAVNEVQVVTDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKV 127
           A E    +   T  +W   +     S+  V+V+F A WCGPCR IAP   +   +    V
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD-LAKKLPNV 60

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
              K++TD+  ++A+ + I+++PT +F K G+  + ++GA  K  L ST+ K++
Sbjct: 61  LFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.2 bits (171), Expect = 7e-17
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 83  DSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT 142
            SS      +   PVL  F    C  C      ++     +  +     +   ++     
Sbjct: 4   GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQE--VDITLPENSTWYE 61

Query: 143 KYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
           +Y         F  NG+    ++  V  S L   L K   
Sbjct: 62  RYKFDIPV---FHLNGQFL--MMHRVNTSKLEKQLRKLSG 96

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 69.9 bits (170), Expect = 1e-16
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 81  VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEE----LAKEYAGKVACFKLNTDD 136
           + D + + +    ++  ++ F  P C  C +      +      K   GK+    +   +
Sbjct: 2   LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 181
            P  A +Y + ++P ++   NGE +    GA P+      L   +
Sbjct: 62  YPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.1 bits (171), Expect = 1e-16
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 80  VVTDSSWENLVISSENPVLVEFWAPWCG-----PCRMIAPAIEELAKEYAGKVACFKLNT 134
            +   ++   VI     VLV+F   +         + +A            +V       
Sbjct: 8   PLDTVTFYK-VIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGD 66

Query: 135 DDSPNIATKY--GIRSIPTVLFFKNGEKKESII--GAVPKSTLSSTLDK 179
             +  ++ KY     S P    F++G+ +  +   GAV    +   L  
Sbjct: 67  KLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG 115

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 69.5 bits (169), Expect = 2e-16
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 70  KAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVAC 129
           +AR   + V V +   + N ++S +   +  F A WCGPC+ I   +E+        V  
Sbjct: 4   RARYP-SVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEK-IAYEFPTVKF 60

Query: 130 FKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
            K++ D++  I +K  +  +PT +  ++G+    +IGA P   L   L   ++
Sbjct: 61  AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPG-MLRQKLRDIIK 112

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 68.8 bits (167), Expect = 3e-16
 Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 73  EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKL 132
           + + +++V T    +   +  +           C  CR  A  +  +  E    +     
Sbjct: 6   DNIKDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 64

Query: 133 N----TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 173
                 +D     ++YGI ++P  +   +G+       ++    +
Sbjct: 65  EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEI 109

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.6 bits (167), Expect = 5e-16
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 82  TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA--------GKVACFKLN 133
            + S+E   +      +V+F        +    A    +K             V      
Sbjct: 8   DELSFEK-TVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG 64

Query: 134 TDDSPNIATKYG--IRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
             ++  +  +Y    ++ P++  FK    +   + +    TL + L  +V 
Sbjct: 65  ELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDN-LKAFVS 114

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.7 bits (159), Expect = 2e-15
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 95  NPVLVE-FWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL 153
           + V +E F +P C  C      +EE+A E    V    +N  ++P  A +YGI ++PT++
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 154 FFKNGEKKESIIGAVPKSTLSSTLDKYV 181
              + E     IGA  K  L   + K +
Sbjct: 62  INGDVE----FIGAPTKEALVEAIKKRL 85

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 66.0 bits (160), Expect = 4e-15
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 76  NEVQVVTDSSWENLVISSENPVLVEFWAPWCG------PCRMIAPAIEELAKEYAGK-VA 128
           + V  V   +++N V      + + +  P            M    +E  A+    K V 
Sbjct: 11  DRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 69

Query: 129 CFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 182
              ++++    +A K G+    ++  FK  E  E   G     TL   L   +E
Sbjct: 70  FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE-YDGEFSADTLVEFLLDVLE 122

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 65.3 bits (158), Expect = 2e-14
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 28/112 (25%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------- 134
           P L+ FW+  C  C+   P + E   +Y  ++    ++                      
Sbjct: 31  PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI 90

Query: 135 ------DDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK 179
                 D    +   +    +P    F K G+ +    G      L   +++
Sbjct: 91  TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (152), Expect = 7e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACF-KLNTD 135
            V  +   S+    I S + VL EF+APWCG C+ +AP   + A+    K     +++  
Sbjct: 11  AVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT 69

Query: 136 DSPNIATKYGIRSIPTVLFFKNGEKKESII--GAVPKSTLSSTLDKYVE 182
           ++ ++  ++ I   P++  FKN +   SI   G      +   + K  +
Sbjct: 70  ENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 61.1 bits (147), Expect = 6e-13
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 30/128 (23%)

Query: 82  TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--------------- 126
            D+   ++ +  + P L++FWA WC  C       E+ A++                   
Sbjct: 11  ADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHE 70

Query: 127 --------------VACFKLNTDDSPNIATKYGIRSIP-TVLFFKNGEKKESIIGAVPKS 171
                              + TD+   IA    I   P   L  K+G+ +  + G++ ++
Sbjct: 71  KKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEA 130

Query: 172 TLSSTLDK 179
              + +  
Sbjct: 131 QALALIRD 138

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.3 bits (135), Expect = 1e-11
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 97  VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK 156
               +++  C  C  +  A+  +A     ++    ++     N  T+  +  +P V    
Sbjct: 18  EFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQNEITERNVMGVPAVFV-- 74

Query: 157 NGEKKESIIGAVPKSTLSSTLD 178
           NG++     G +  + + + +D
Sbjct: 75  NGKEFGQ--GRMTLTEIVAKVD 94

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 56.9 bits (136), Expect = 1e-11
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 75  VNEVQVVTDSSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGK------V 127
           +N  Q+ T       ++ ++  PV+++ +A WC  C+          +            
Sbjct: 2   LNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQ 61

Query: 128 ACFKLNTDDSPNIATKYGIRSIPTVLFF-KNGEKKES--IIGAVPKSTLSSTL 177
           A    N      +     +  +PT+LFF   G++     + G +   T S+ L
Sbjct: 62  ANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHL 114

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.9 bits (136), Expect = 3e-11
 Identities = 9/90 (10%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD 136
           E   +  +  E L        L+     WC  C++   A++   +     +    ++   
Sbjct: 37  ESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-PNIELAIISKGR 95

Query: 137 SPNIATKYGIRSIPTVLFFKNGEKKESIIG 166
           + +   +        +      +++ +++G
Sbjct: 96  AEDDLRQRLALERIAIPLVLVLDEEFNLLG 125

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 1e-10
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 85  SWEN---LVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPN 139
           + E+      +S  P++V     WCG C+ + P   E  +          +N +D   P 
Sbjct: 13  TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK 72

Query: 140 IATKYGIRSIPTVLFF--KNGEKKESIIGAVPK 170
                        + F   +G+    II     
Sbjct: 73  DEDFSPDGGYIPRILFLDPSGKVHPEIINENGN 105

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (128), Expect = 2e-10
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 21/122 (17%)

Query: 82  TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY------------------ 123
               ++  V++   PVL+  WA WC   R     + +L+ +                   
Sbjct: 8   PGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISW 67

Query: 124 --AGKVACFKLNTDDSPNIATKYGIRSIP-TVLFFKNGEKKESIIGAVPKSTLSSTLDKY 180
                        D    +    G+   P T L   NG  +    G +        +   
Sbjct: 68  LKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 127

Query: 181 VE 182
            E
Sbjct: 128 WE 129

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 28/104 (26%)

Query: 81  VTDSSWENLVISS--ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDD 136
           V   +  ++ + S     V   F A WC P R   P + +  K +A K       ++ D+
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72

Query: 137 SP------------------------NIATKYGIRSIPTVLFFK 156
           S                          + T + ++SIPT++  +
Sbjct: 73  SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVE 116

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 24/108 (22%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------- 134
           P ++ FW PWC  C   AP++ ++A                                   
Sbjct: 26  PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLN 85

Query: 135 DDSPNIATKYGIRSIPTVLFF-KNGEKK--ESIIGAVPKSTLSSTLDK 179
           D    I  +Y +   P  +F+  +G      +   A+ +  LS  +  
Sbjct: 86  DADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 45.5 bits (106), Expect = 3e-07
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 28/128 (21%)

Query: 77  EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK---------- 126
           +V  +  ++++          LV  WA WC PC   AP + EL K+   +          
Sbjct: 20  QVPGLDPAAFKG------KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAA 73

Query: 127 -----------VACFKLNTDDSPNIATKYGIRSIPT-VLFFKNGEKKESIIGAVPKSTLS 174
                          ++  D +   + ++G+  +P   +  + G     ++G +    L 
Sbjct: 74  DNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLR 133

Query: 175 STLDKYVE 182
           S L   +E
Sbjct: 134 SVLLPQME 141

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 28/98 (28%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPN-------------- 139
            V + F A WC PCR   P + E  +++          ++ D++ +              
Sbjct: 30  TVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLAL 89

Query: 140 ----------IATKYGIRSIPTVLFFKNGEKKESIIGA 167
                     +   +G+ SIPT++          IIG 
Sbjct: 90  PFDQRSTVSELGKTFGVESIPTLITINADTGA--IIGT 125

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 7/93 (7%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 96  PVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLN--TDDSPNIATKYGIRSIP 150
            +++         C+ +   +   E +          +++   +++       Y +   P
Sbjct: 44  WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103

Query: 151 TVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE 182
            V        +K      +  S+    +  ++ 
Sbjct: 104 YVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLG 136

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 22/106 (20%)

Query: 96  PVLVEFWAPWCGPCRMIAPAIEELAKEY----------------------AGKVACFKLN 133
           P ++ FWAPWC  C+  AP + ++A  +                         V  F   
Sbjct: 27  PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL 86

Query: 134 TDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 179
            D   ++   +G+   P   F       + + G + +  L+  +  
Sbjct: 87  ADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTA 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.97
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.97
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.97
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.96
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.96
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.95
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.95
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.94
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.94
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.94
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.94
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.93
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.93
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.92
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.92
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.91
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.91
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.9
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.89
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.88
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.88
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.87
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.86
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.84
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.83
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.83
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.79
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.79
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.76
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.74
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.72
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.71
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.71
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.67
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.61
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.61
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.6
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.6
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.57
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.55
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.53
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.47
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.42
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.31
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.0
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.94
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.91
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.84
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.83
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.79
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.76
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.73
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.72
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.64
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.63
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.59
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.53
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.45
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.44
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.43
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.43
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.42
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.39
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.37
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.35
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.35
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.3
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.27
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.26
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	98.21
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.2
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.14
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.13
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.08
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.03
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.02
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.99
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.9
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.81
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.81
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.71
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.71
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.66
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.13
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.01
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.91
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	96.67
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.5
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	95.48
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.43
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	95.35
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	94.34
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	92.91
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	92.85
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.18
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	89.89
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	89.4
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	89.12
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	87.55
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	80.74
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	80.55

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.97  E-value=5.8e-30  Score=177.79  Aligned_cols=104  Identities=71%  Similarity=1.296  Sum_probs=100.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      |+++|+++|++.+.+++++++|+|||+||++|+++.|.++++++++.+++.++++|.|++++++++|+|+++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            57899999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      |++++++.|..+.++|.++|+++|
T Consensus        81 G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          81 GERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999999999999999999986

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.97  E-value=1.2e-29  Score=177.38  Aligned_cols=107  Identities=35%  Similarity=0.706  Sum_probs=102.5

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ..|.++|+++|++.+.+++++++|+|||+||++|+.+.|.++++++++.+++.++++|+|++++++++|+|+++||+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            35899999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.+||+++|.
T Consensus        82 ~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          82 KGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999999999999874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-29  Score=177.52  Aligned_cols=107  Identities=47%  Similarity=0.926  Sum_probs=102.8

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.+.++|+++|++.+.+++++|+|+|||+||++|+++.|.+++++.++.+++.++++|+|+++.++++|+|+++||+++|
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence            56899999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+++.++.|..+.++|.+||++.|.
T Consensus        82 ~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          82 KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999999999999999999874

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.96  E-value=1.1e-29  Score=177.29  Aligned_cols=106  Identities=58%  Similarity=1.149  Sum_probs=101.7

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~  156 (182)
                      .+..+|+++|++.+.+++++|+|+|||+||++|+.+.|.++++++++.+++.++++|+|++++++++|+|+++||+++|+
T Consensus         2 ~~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~   81 (107)
T d1dbya_           2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred             CceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEE
Confidence            35778999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          157 NGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       157 ~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +|+++.++.|..+.++|.++|+++|+
T Consensus        82 ~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          82 GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             CCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            99999999999999999999999985

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.96  E-value=3e-29  Score=174.48  Aligned_cols=104  Identities=44%  Similarity=0.907  Sum_probs=99.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      ..++|+++|++ +++++++++|+|||+||++|+.+.|.++++++++++++.|+++|+|+++.++++|+|+++||+++|++
T Consensus         2 ~i~lt~~~f~~-~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           2 TMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHH-HTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             EEEECHHHHHH-HHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence            36789999998 56788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+++.++.|..+.++|.++|+++|+
T Consensus        81 G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          81 GEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHhC
Confidence            9999999999999999999999885

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.95  E-value=4.4e-27  Score=165.62  Aligned_cols=106  Identities=34%  Similarity=0.760  Sum_probs=96.7

Q ss_pred             CccEEc-ChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.+..+ ++++|++.+.   .++++++|+||++||++|+.+.|.++++++++.+++.|+++|+|++++++++|+|+++||
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence            346666 6788887664   368999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.| .+.++|.+||+++.+
T Consensus        82 ~~~~~~G~~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          82 FHVYKDGVKADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEECCEEEEEEeC-cCHHHHHHHHHHHhC
Confidence            999999999999999 589999999999863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-26  Score=162.68  Aligned_cols=103  Identities=24%  Similarity=0.461  Sum_probs=94.3

Q ss_pred             cEEc-ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ++.+ ++++|++.+.. ++++++|+|||+||++|+++.|.|+++++++++ +.|+++|+|++++++++|+|+++||+++|
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEEEEE
Confidence            3444 77899986654 578999999999999999999999999999985 89999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.++++.|. ++++|.++|+++|+
T Consensus        82 ~~G~~v~~~~G~-~~~~l~~~i~k~le  107 (107)
T d1gh2a_          82 RNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHHhhC
Confidence            999999999995 89999999999986

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=161.82  Aligned_cols=102  Identities=31%  Similarity=0.718  Sum_probs=91.9

Q ss_pred             cEEc-ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           78 VQVV-TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        78 v~~l-~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      +.++ +.++|++.+.. .+++++|+|||+||++|+.+.|.++++++++++ +.|+++|.|++++++++|+|+++||+++|
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHhHHHHcCceEEEEEEEE
Confidence            3455 56778886654 468999999999999999999999999999976 78999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +||++++++.|. ++++|.++|+++|
T Consensus        81 ~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          81 KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            999999999995 8899999999986

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.1e-26  Score=162.54  Aligned_cols=105  Identities=36%  Similarity=0.724  Sum_probs=94.8

Q ss_pred             CccEEc-ChhhHHHHHH---cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           76 NEVQVV-TDSSWENLVI---SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      +.++.+ +.++|++.+.   ++++++||+|||+||++|+.+.|.|+++++.+++ +.|+++|.+++++++++|+|+++||
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPT   84 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceeeeEE
Confidence            445555 7788877553   5789999999999999999999999999999975 8999999999999999999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      +++|++|+.+.++.|. ++++|.++|+++|+
T Consensus        85 ~~~~~~G~~v~~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          85 FMFLKEGKILDKVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHCC
T ss_pred             EEEEECCEEEEEEeCc-CHHHHHHHHHHhhC
Confidence            9999999999999995 78999999999984

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.94  E-value=2.3e-26  Score=162.27  Aligned_cols=102  Identities=27%  Similarity=0.556  Sum_probs=92.9

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEEC
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKN  157 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~  157 (182)
                      +...+.++|++ ++.++++++|+|||+||++|+++.|.|++++++++ ++.|+++|+|++++++++|||+++||+++|++
T Consensus        11 i~i~s~~~~~~-~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   88 (113)
T d1r26a_          11 VDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIARS   88 (113)
T ss_dssp             EEECCHHHHHH-HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             EEeCCHHHHHH-HHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEEEEEC
Confidence            34447788888 55778999999999999999999999999999997 59999999999999999999999999999999


Q ss_pred             CeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          158 GEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       158 G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+++.++.|. +++.+.++|+++|+
T Consensus        89 G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          89 GKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             TEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCC-CHHHHHHHHHHHhc
Confidence            9999999996 67889999998873

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.8e-26  Score=160.25  Aligned_cols=105  Identities=34%  Similarity=0.700  Sum_probs=94.3

Q ss_pred             CccEEc-ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVV-TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l-~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ..+.++ +.++|+..+. .+++++||+|||+||++|+.+.|.|+++++++++.+.++++|.|++++++++|+|+++||++
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~   84 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV   84 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence            445566 5578887665 46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+++.++.|. +.++|+++|++.|
T Consensus        85 ~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          85 FLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            99999999999996 6678999998764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.94  E-value=3.4e-26  Score=161.12  Aligned_cols=105  Identities=30%  Similarity=0.617  Sum_probs=95.7

Q ss_pred             cCccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEE
Q 030165           75 VNEVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-SPNIATKYGIRSIPTV  152 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-~~~l~~~~~I~~iPTl  152 (182)
                      .+.+.+++.++|.+.+.. .+++++|+||++||++|+.+.|.|+++++++.+ +.|+++|+++ +++++++|+|+++||+
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt~   83 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTF   83 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCEE
Confidence            577999999999997765 468999999999999999999999999999986 8899999975 7899999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|++|++++++.|. +.+++.++|++..
T Consensus        84 ~~~k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          84 KILKENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence            999999999999996 6788999998763

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.93  E-value=8.4e-26  Score=156.47  Aligned_cols=97  Identities=35%  Similarity=0.760  Sum_probs=89.4

Q ss_pred             cChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           81 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      .+.++|++ +++++++++|+||++||++|+++.|.++++++++++ +.|+++|+|++++++++|+|+++||+++|++|++
T Consensus         6 ~s~~~f~~-~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~   83 (103)
T d1syra_           6 TSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS   83 (103)
T ss_dssp             CSHHHHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CCHHHHHH-HHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence            46788888 556788999999999999999999999999999975 7899999999999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHH
Q 030165          161 KESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~  180 (182)
                      +.++.|. +.++|.++|+++
T Consensus        84 v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          84 VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEeCc-CHHHHHHHHHhh
Confidence            9999995 789999999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.93  E-value=1.8e-25  Score=157.44  Aligned_cols=103  Identities=31%  Similarity=0.678  Sum_probs=90.5

Q ss_pred             ccEEc-ChhhHHHHH---HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           77 EVQVV-TDSSWENLV---ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        77 ~v~~l-~~~~~~~~~---~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      .++.+ +.++|++.+   ..++++|||+|||+||++|+.+.|.|+++++++++ +.|+++|+|++++++++|+|+++||+
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt~   83 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTF   83 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeecccceE
Confidence            44444 455555533   35789999999999999999999999999999975 89999999999999999999999999


Q ss_pred             EEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          153 LFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++|+||+.+.++.| .++++|.++|+++.
T Consensus        84 ~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          84 IFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            99999999999999 57889999999874

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.92  E-value=6.5e-25  Score=152.56  Aligned_cols=101  Identities=21%  Similarity=0.369  Sum_probs=88.6

Q ss_pred             cChhhHHHHHHcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHH----hcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030165           81 VTDSSWENLVISSENPV-LVEFWAPWCGPCRMIAPAIEELAKE----YAGKVACFKLNTDDSPNIATKYGIRSIPTVLFF  155 (182)
Q Consensus        81 l~~~~~~~~~~~~~~~v-lV~F~a~wC~~C~~~~p~l~~~a~~----~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f  155 (182)
                      ++++.++. +...++++ ++.||++||++|+++.|.+++++.+    +..++.+..+|.+++++++++|+|.++||++++
T Consensus         2 l~~~~~e~-~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           2 LMDETKQA-IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCHHHHHH-HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHHH-HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            56676666 55556665 5579999999999999999999865    345699999999999999999999999999999


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++|+.+.++.|..+.++|.++|.+.|+
T Consensus        81 ~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          81 VNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             eCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            999999999999999999999999874

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-24  Score=154.36  Aligned_cols=106  Identities=24%  Similarity=0.476  Sum_probs=95.2

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      ...+.+++.++|++ ++++++.++|+||++||++|+.+.|.|+++++.+.+ ++.|++||++++++++.+|+|+++||++
T Consensus         9 ~s~v~~lt~~~f~~-~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~   87 (119)
T d2b5ea4           9 DSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK   87 (119)
T ss_dssp             TSSCEECCTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCccEEcCHHHHHH-HHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEE
Confidence            34688999999998 456788999999999999999999999999999864 5999999999999999999999999999


Q ss_pred             EEECCeEEEE--EEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKKES--IIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v~~--~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+...+  +.|..+.++|.+||++..
T Consensus        88 ~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          88 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            9999976554  568899999999999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-25  Score=156.81  Aligned_cols=108  Identities=28%  Similarity=0.624  Sum_probs=96.7

Q ss_pred             hccCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcc
Q 030165           73 EAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSI  149 (182)
Q Consensus        73 ~~~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~i  149 (182)
                      +..+.|..++.++|++ ++++++++||+|||+||++|+.+.|.++++++.+.+   ++.++.+|+++++.++.+|+|.++
T Consensus         4 ~~~~~V~~l~~~~f~~-~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   82 (120)
T d1meka_           4 EEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY   82 (120)
T ss_dssp             CEETTEEECCTTTHHH-HHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred             CCCCCeEEcCHHHHHH-HHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccC
Confidence            4456799999999998 556789999999999999999999999999998854   489999999999999999999999


Q ss_pred             cEEEEEECCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFFKNGEKK--ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f~~G~~v--~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||+++|++|+.+  .++.|..+.++|.+||++.+
T Consensus        83 Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_          83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhh
Confidence            999999998765  45678899999999999875

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=156.31  Aligned_cols=99  Identities=14%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             ChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeE
Q 030165           82 TDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        82 ~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +..++++.+.. ++++|||+|||+||++|+++.|.++++++++++++.|++||+|++++++++|+|+++||+++|++|+.
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcE
Confidence            66788887764 57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcC----------CCHHHHHHHHHHH
Q 030165          161 KESIIGA----------VPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~----------~~~~~l~~~l~~~  180 (182)
                      +....|.          .+.+++.+.++.+
T Consensus        89 i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          89 IMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            8766653          3677888888765

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=3.7e-25  Score=157.46  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=84.0

Q ss_pred             ccEEcChhhHHHHHHc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTDSSWENLVIS-SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ....++..+++..+.. .+++|++.||++||++|+.+.|.|++++++|++ ++.+++||.|++++++++|||+++||+++
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            4567888899876554 467889999999999999999999999999987 69999999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |+||+.+.++.|..+.+++.++|+++|+
T Consensus        92 ~~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          92 FTDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             ESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999985

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7e-25  Score=158.71  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=97.5

Q ss_pred             ccEEcChhhHHHHHHcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030165           77 EVQVVTDSSWENLVISS-ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSPNIATKYGIRSIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~~l~~~~~I~~iPTl~~  154 (182)
                      ....++.++|+..+... +++|+|+|||+||++|+.+.|+|+++++++++. +.+++||+|++++++++|+|+++||+++
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            45678999999866654 467899999999999999999999999999885 6888999999999999999999999999


Q ss_pred             EECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          155 FKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       155 f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      |++|+.+.++.|..+.++|.++|+++++
T Consensus        98 ~~~G~~v~~~~G~~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          98 FTGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_dssp             EETTEEEEEECCCSCHHHHHHHHHHHHS
T ss_pred             EEcCcEeeeecCCCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999874

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=4.9e-23  Score=145.10  Aligned_cols=102  Identities=12%  Similarity=0.239  Sum_probs=88.8

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKYGIRSIPT  151 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~~I~~iPT  151 (182)
                      ..+...+.+++.+ ++.++++++|+||++||++|+.+.|.|++++++++.++.++.++...+    .+++++|+|+++||
T Consensus         9 ~~~~~~t~~~~~~-~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1           9 KDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TTSEECCHHHHHH-HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeeeCCHHHHHH-HHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccE
Confidence            4577788888888 557899999999999999999999999999999987776665543333    46889999999999


Q ss_pred             EEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          152 VLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       152 l~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      +++|++|+++.++.|..++++|.+||.
T Consensus        88 li~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999999999999999999999984

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=7.1e-24  Score=141.59  Aligned_cols=84  Identities=29%  Similarity=0.468  Sum_probs=77.7

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      .+..|++|||+||++|+++.|.++++++++++.+.++.+|.|++++++++|||+++||++++++|+    +.|..+.++|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l   77 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL   77 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence            467899999999999999999999999999988999999999999999999999999998877664    5699999999


Q ss_pred             HHHHHHHh
Q 030165          174 SSTLDKYV  181 (182)
Q Consensus       174 ~~~l~~~l  181 (182)
                      .++|++.|
T Consensus        78 ~~~i~~~L   85 (85)
T d1fo5a_          78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999876

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=1.5e-22  Score=144.29  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=90.5

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChh------hhhhhHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCC
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGP------CRMIAPAIEELAKEYAG-KVACFKLNTDDSPNIATKYGIR  147 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~------C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~~~l~~~~~I~  147 (182)
                      .+.|.++|+++|++.+ ++++.++|+||||||++      |.++.+.++++++.+.+ .+.|++||++++++++++|+|+
T Consensus        10 ~~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~   88 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   88 (124)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccc
Confidence            3558999999999955 45678999999999996      45556666777766644 4999999999999999999999


Q ss_pred             cccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          148 SIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       148 ~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      ++||+++|++|+.+ .+.|..+.+.|.+||.+.|+
T Consensus        89 ~yPTi~~f~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          89 EEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             STTCEEEEESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             cCCcEEEeccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            99999999999876 57899999999999999874

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.87  E-value=8.8e-24  Score=148.56  Aligned_cols=106  Identities=27%  Similarity=0.509  Sum_probs=87.6

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc--eEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~--v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      +.|..+++++|++.+.++++++||+|||+||++|+++.|.|+++++.+...  ..++.++.++...++.+++|+++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            678999999999977788999999999999999999999999999999753  112344444444556689999999999


Q ss_pred             EEECCeEE--EEEEcCCCHHHHHHHHHHHh
Q 030165          154 FFKNGEKK--ESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~~G~~v--~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +|++|+..  ..+.|..+.+.|.+||++..
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            99988643  35678899999999998754

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.7e-23  Score=150.37  Aligned_cols=104  Identities=30%  Similarity=0.541  Sum_probs=89.4

Q ss_pred             cCccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccE
Q 030165           75 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG---KVACFKLNTDDSPNIATKYGIRSIPT  151 (182)
Q Consensus        75 ~~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~---~v~~~~vd~d~~~~l~~~~~I~~iPT  151 (182)
                      .+.|.++++++|++.+...+++|+|+|||+||++|+.+.|.|+++++.+.+   .+.++.+|  .+.+++.+|+|+++||
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d--~~~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD--HTENDVRGVVIEGYPT   88 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEE--GGGCCCSSCCCSSSSE
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeee--ccchhccccccccCCe
Confidence            456899999999998888889999999999999999999999999998864   35555555  4556899999999999


Q ss_pred             EEEEECCeEEEE--EEcCCCHHHHHHHHHHH
Q 030165          152 VLFFKNGEKKES--IIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       152 l~~f~~G~~v~~--~~G~~~~~~l~~~l~~~  180 (182)
                      +++|++|+....  +.|..+.+.|.+||++.
T Consensus        89 l~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          89 IVLYPGGKKSESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred             EEEEECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence            999999877654  56999999999999875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=3.4e-22  Score=133.60  Aligned_cols=82  Identities=24%  Similarity=0.459  Sum_probs=75.1

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHH
Q 030165           97 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSST  176 (182)
Q Consensus        97 vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~  176 (182)
                      .++.||++||++|+++.|.+++++++|++++.++++|+|++++++++|||+++||+++  +|+.  ++.|..+.++|.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCcE--EEEcCCCHHHHHHH
Confidence            3566999999999999999999999999999999999999999999999999999876  6653  57899999999999


Q ss_pred             HHHHhC
Q 030165          177 LDKYVE  182 (182)
Q Consensus       177 l~~~l~  182 (182)
                      |++.|+
T Consensus        80 i~~~l~   85 (85)
T d1nhoa_          80 INDEME   85 (85)
T ss_dssp             HHHHCC
T ss_pred             HHHhhC
Confidence            999875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-21  Score=138.27  Aligned_cols=101  Identities=16%  Similarity=0.273  Sum_probs=83.5

Q ss_pred             ccEEcChhhHHHHHHc-CCCcEEEEEEcC-------CChhhhhhhHHHHHHHHHhcCceEEEEEeC-------CCChHHH
Q 030165           77 EVQVVTDSSWENLVIS-SENPVLVEFWAP-------WCGPCRMIAPAIEELAKEYAGKVACFKLNT-------DDSPNIA  141 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~-~~~~vlV~F~a~-------wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-------d~~~~l~  141 (182)
                      ++...+.++|.+.+.. .+++|+|+|||+       ||++|+.+.|.++++++.+.+++.|++||+       |.+..++
T Consensus         3 ~i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~   82 (119)
T d1woua_           3 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   82 (119)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHH
Confidence            3566678889886654 568999999995       999999999999999999998899999998       4566799


Q ss_pred             HHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHH
Q 030165          142 TKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD  178 (182)
Q Consensus       142 ~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~  178 (182)
                      ++|+|+++||+++|++|+.+....+ .+++.+..+++
T Consensus        83 ~~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          83 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HhCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            9999999999999999987765433 45666665654

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=1.5e-20  Score=133.58  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCC-----CChHHHHHcCC--
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYA---GKVACFKLNTD-----DSPNIATKYGI--  146 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~---~~v~~~~vd~d-----~~~~l~~~~~I--  146 (182)
                      .+.+|++++|++.+ .+++.+||.|||+||++|+  .|.|+++++.+.   ..+.+++||++     ++.+++.+|+|  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            37899999999954 6678999999999999999  499999998763   46899999985     46889999998  


Q ss_pred             CcccEEEEEECCeEEE---EEEcCCCHHHHHHHHHHHh
Q 030165          147 RSIPTVLFFKNGEKKE---SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       147 ~~iPTl~~f~~G~~v~---~~~G~~~~~~l~~~l~~~l  181 (182)
                      +++||+++|++|+...   .+.|..+.+.|.+||++..
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence            5899999999886433   3457789999999999754

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=5e-20  Score=125.74  Aligned_cols=90  Identities=14%  Similarity=0.245  Sum_probs=76.7

Q ss_pred             hhHHHHHHcCCC-cEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEE
Q 030165           84 SSWENLVISSEN-PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        84 ~~~~~~~~~~~~-~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~  162 (182)
                      .++.+.+..-++ ..++.||++||++|+.+.|.++++++.++ ++.+..+|.+++++++++|||+++||+++  ||+.+ 
T Consensus         4 ~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~-   79 (96)
T d1hyua4           4 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF-   79 (96)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-
T ss_pred             HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccchHHHhhcccccccEEEE--CCEEE-
Confidence            345555555444 56888999999999999999999998876 59999999999999999999999999854  99875 


Q ss_pred             EEEcCCCHHHHHHHHH
Q 030165          163 SIIGAVPKSTLSSTLD  178 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~  178 (182)
                       +.|.++.++|.++|+
T Consensus        80 -~~G~~~~~~l~~~le   94 (96)
T d1hyua4          80 -GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             -EESCCCHHHHHHHHC
T ss_pred             -EecCCCHHHHHHHHh
Confidence             579999999999885

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.1e-19  Score=126.07  Aligned_cols=97  Identities=21%  Similarity=0.491  Sum_probs=77.4

Q ss_pred             ChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEE
Q 030165           82 TDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDD----SPNIATKYGIRSIPTVL  153 (182)
Q Consensus        82 ~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~----~~~l~~~~~I~~iPTl~  153 (182)
                      +.++++..+. ..+++++|+|||+||++|+.+.|.+   .++.+.+. ++.++.+|.+.    +.+++++|+|.++||++
T Consensus         9 ~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~   87 (117)
T d2fwha1           9 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTIL   87 (117)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEEE
Confidence            4456655443 4689999999999999999999987   55555554 47777787754    34689999999999999


Q ss_pred             EE-ECCeEEE--EEEcCCCHHHHHHHHHH
Q 030165          154 FF-KNGEKKE--SIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       154 ~f-~~G~~v~--~~~G~~~~~~l~~~l~~  179 (182)
                      +| ++|+++.  ++.|..++++|.++|++
T Consensus        88 ~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          88 FFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            99 5888763  67899999999999975

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.2e-19  Score=128.35  Aligned_cols=94  Identities=17%  Similarity=0.383  Sum_probs=75.6

Q ss_pred             hHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHH
Q 030165           85 SWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIA  141 (182)
Q Consensus        85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~  141 (182)
                      .+.......+++|||+|||+||++|+...|.++++++.   .+.++.++.+                       .+..+.
T Consensus        11 ~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   87 (136)
T d1z5ye1          11 FYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG   87 (136)
T ss_dssp             EECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHH
T ss_pred             EecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchhHH
Confidence            34443445799999999999999999999999998754   3555555543                       333588


Q ss_pred             HHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          142 TKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       142 ~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ..|+|.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        88 ~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          88 LDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             HHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             HhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            88999999988888 69999999999999998888887776

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.3e-19  Score=127.34  Aligned_cols=102  Identities=20%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             CccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-------ceEEEEEeCCCChHHHHHcC--C
Q 030165           76 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-------KVACFKLNTDDSPNIATKYG--I  146 (182)
Q Consensus        76 ~~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-------~v~~~~vd~d~~~~l~~~~~--I  146 (182)
                      ..+++||+++|++ ++.+++.++|+||++||..|.  .|.++++++.+.+       ++.+.++|++++++++.+|+  |
T Consensus         4 ~~~v~L~~~nFd~-~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFYK-VIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHHH-HGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHHH-HHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            4578999999998 446688999999999998886  4888888888864       24555667788889999875  7


Q ss_pred             CcccEEEEEECCeE--EEEEEcCCCHHHHHHHHHHH
Q 030165          147 RSIPTVLFFKNGEK--KESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       147 ~~iPTl~~f~~G~~--v~~~~G~~~~~~l~~~l~~~  180 (182)
                      +++||+++|++|+.  ...+.|..+.+.|.+||++-
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            79999999999864  35788999999999999863

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1e-18  Score=135.73  Aligned_cols=103  Identities=19%  Similarity=0.361  Sum_probs=88.5

Q ss_pred             CccEEcC-hhhHHHHHHcCC--CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 030165           76 NEVQVVT-DSSWENLVISSE--NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTV  152 (182)
Q Consensus        76 ~~v~~l~-~~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl  152 (182)
                      +.+.+++ .++|.+.+..++  ..|||+||++||++|+.|.+.|++++++|+. ++|++||.++.+ +..+|+|+++|||
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch-hHHhCCCCCCCeE
Confidence            6788886 577888776544  4799999999999999999999999999986 999999998764 5689999999999


Q ss_pred             EEEECCeEEEEEEcCC-------CHHHHHHHHHHH
Q 030165          153 LFFKNGEKKESIIGAV-------PKSTLSSTLDKY  180 (182)
Q Consensus       153 ~~f~~G~~v~~~~G~~-------~~~~l~~~l~~~  180 (182)
                      ++|+||+.++++.|..       +.++|+.+|.++
T Consensus       177 ~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999999999998853       467788887654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=2e-17  Score=119.82  Aligned_cols=101  Identities=16%  Similarity=0.400  Sum_probs=84.1

Q ss_pred             EEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------
Q 030165           79 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------  135 (182)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------  135 (182)
                      ..++++.... ....+++++|+||++||++|+...|.++++.+++.+++.++.++.+                       
T Consensus        15 ~~~ng~~~~~-~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p   93 (143)
T d2b5xa1          15 AWLNGEVTRE-QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (143)
T ss_dssp             EEESCCCCHH-HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             cCcCCeEecH-HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCcc
Confidence            3345444433 4457899999999999999999999999999999988899888753                       


Q ss_pred             ----CChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          136 ----DSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       136 ----~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                          ....+++.|++.++|+++++ ++|+.+.+..|..+.+++++.|+++
T Consensus        94 ~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1          94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             ccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence                22247788999999998888 6999999999999999999999875

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.72  E-value=1.9e-17  Score=119.51  Aligned_cols=103  Identities=17%  Similarity=0.384  Sum_probs=84.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC----------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNT----------------------  134 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~----------------------  134 (182)
                      +...++..+.- ....++++||+|||+||++|+...|.+.++.++++. .+.++.+..                      
T Consensus         8 l~~~~~~~~~l-~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           8 LKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             CEETTSCBGGG-GCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eECCCCCEeeH-HHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            45555555543 335689999999999999999999999999988764 466666654                      


Q ss_pred             ------CCChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 ------DDSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 ------d~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                            |.+.++++.||+.++|+++++ ++|+.+.+..|.++.+++.++|+++.
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence                  234468999999999999999 79999999999999999999998754

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=4.3e-17  Score=116.51  Aligned_cols=100  Identities=18%  Similarity=0.452  Sum_probs=79.3

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC----------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD----------------------  135 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d----------------------  135 (182)
                      +..++++.+.. ..-.++++||+||++||++|++..|.++++++++++ +.++.++.+                      
T Consensus        10 ~~~~~G~~~~l-~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~   87 (134)
T d1zzoa1          10 AKTLDGHDFHG-ESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (134)
T ss_dssp             EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEcCCCCEEeH-HHhCCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEe
Confidence            44555554443 223589999999999999999999999999999875 666666653                      


Q ss_pred             -CChHHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          136 -DSPNIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       136 -~~~~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                       ...++.+.||+.++|+++++ ++|++ ..+.|..+.+++.+.|+++
T Consensus        88 D~~~~~~~~~~v~~~P~~~iiD~~G~i-~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          88 DTDGSVWANFGVTQQPAYAFVDPHGNV-DVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCE-EEEESCCCHHHHHHHHHHH
T ss_pred             eccchHHHhcCCCccCeEEEECCCCeE-EEEECCCCHHHHHHHHHhh
Confidence             23358889999999999999 47775 5577999999999999876

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.71  E-value=1.7e-17  Score=120.23  Aligned_cols=87  Identities=25%  Similarity=0.515  Sum_probs=73.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------CCChHHHHHcCCCcc
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT-----------------------DDSPNIATKYGIRSI  149 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~I~~i  149 (182)
                      .++++||+||++||++|+...|.++++.+.++.  .++.++.                       |.+..+.+.|||.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF--QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS--EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc--eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            469999999999999999999999999877653  4443333                       334568999999999


Q ss_pred             cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          150 PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       150 PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      ||++++ ++|+++.+..|..+.+++.+.|++.|
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            998888 59999999999999999998888776

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=7.3e-17  Score=115.62  Aligned_cols=101  Identities=20%  Similarity=0.484  Sum_probs=79.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC--------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS--------------------  137 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~--------------------  137 (182)
                      +..++++.+.. ..-.++++||+||++||++|+...|.++++++++++ +.++.++.+++                    
T Consensus         9 ~~~~~G~~~~l-~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d   86 (134)
T d1lu4a_           9 ATTLSGAPFDG-ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (134)
T ss_dssp             EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             eECCCCCEEcH-HHhCCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeC
Confidence            44556665543 223589999999999999999999999999998865 88888887543                    


Q ss_pred             --hHHHHHcCCCcccEEEEEE-CCeEEE--EEEcCCCHHHHHHHHHHH
Q 030165          138 --PNIATKYGIRSIPTVLFFK-NGEKKE--SIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       138 --~~l~~~~~I~~iPTl~~f~-~G~~v~--~~~G~~~~~~l~~~l~~~  180 (182)
                        ..+++.|||.++|+++++. +|+...  +..|..+.+++.+.|+.+
T Consensus        87 ~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          87 ADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             chHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence              3578889999999999994 887643  345778999999998764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.7e-16  Score=107.72  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=73.2

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHH
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKS  171 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~  171 (182)
                      .+..++|++||++||++|+++.+.|+++..+|.  ..++.+|.++++++.++|+++ +|++++  ||+.+  ..|..+.+
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~   85 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTS   85 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHH
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHH
Confidence            456789999999999999999999999988876  678899999999999999998 998755  88875  55889999


Q ss_pred             HHHHHHHHHh
Q 030165          172 TLSSTLDKYV  181 (182)
Q Consensus       172 ~l~~~l~~~l  181 (182)
                      +|.++|+++.
T Consensus        86 ~L~~~L~~l~   95 (100)
T d1wjka_          86 KLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=3.4e-15  Score=106.88  Aligned_cols=101  Identities=19%  Similarity=0.474  Sum_probs=80.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCCh------------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDSP------------------  138 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~~------------------  138 (182)
                      +..++++.+.. ..-.+++++|+||++||++|+...+.+.++.+++.++ +.++.++.+++.                  
T Consensus        10 l~~~~G~~~~l-~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~   88 (137)
T d1st9a_          10 LEDTNGKRIEL-SDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVL   88 (137)
T ss_dssp             EECTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEE
T ss_pred             EECCCcCEEeH-HHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccc
Confidence            33444443432 2236789999999999999999999999999998754 888888875433                  


Q ss_pred             ----HHHHHcCCCcccEEEEE-ECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          139 ----NIATKYGIRSIPTVLFF-KNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       139 ----~l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                          .++..|++.++|+++++ ++|+.+.++.|..+.+.+++.|+.
T Consensus        89 d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_          89 DTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             ETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                47788999999998888 699999999999999998887754

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.9e-15  Score=114.43  Aligned_cols=103  Identities=21%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC----------------------
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT----------------------  134 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~----------------------  134 (182)
                      .+..+++..+.- ..-.++++||+||++||++|+...|.+.+++++|.+++.++.++.                      
T Consensus        16 ~l~d~~G~~~~L-sd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~   94 (187)
T d2cvba1          16 ELPDPRGGRYRL-SQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHG   94 (187)
T ss_dssp             EEECTTSCEEEG-GGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHT
T ss_pred             EeecCCCCEEEH-HHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhC
Confidence            345555555432 223579999999999999999999999999999998889988864                      


Q ss_pred             -------CCChHHHHHcCCCcccEEEEEE-CCeEEEEEEcC----------CCHHHHHHHHHHHhC
Q 030165          135 -------DDSPNIATKYGIRSIPTVLFFK-NGEKKESIIGA----------VPKSTLSSTLDKYVE  182 (182)
Q Consensus       135 -------d~~~~l~~~~~I~~iPTl~~f~-~G~~v~~~~G~----------~~~~~l~~~l~~~l~  182 (182)
                             |...++++.|++.++|+++++. +|+.+.+  |.          .+..+|.+.|+++|+
T Consensus        95 ~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~--G~idd~~~~~~~~~~~~L~~Ai~~ll~  158 (187)
T d2cvba1          95 IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLR  158 (187)
T ss_dssp             CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             CcceeeechhhhhcccccccceeeEEEEcCCCeEEEE--eeecCCCCCCCCCCHHHHHHHHHHHHc
Confidence                   3344688999999999999994 7877543  43          344679999998874

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.9e-15  Score=108.61  Aligned_cols=99  Identities=9%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEEE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAI---EELAKEYAGKVACFKLNTDDS--PNIATKYGIRSIPTVLFFK  156 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~~a~~~~~~v~~~~vd~d~~--~~l~~~~~I~~iPTl~~f~  156 (182)
                      +-++-.+...+++|+++|+||++||++|+.|....   +++.+.+..++.++.+|.+..  ..++++|+|.++|+++++.
T Consensus        30 ~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~id  109 (147)
T d2dlxa1          30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILD  109 (147)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEEC
T ss_pred             CHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEe
Confidence            33444454667899999999999999999998854   667776776788999998765  6789999999999999995


Q ss_pred             --CCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          157 --NGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       157 --~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                        +|+++ +..|.++++++.+.|+++|
T Consensus       110 p~~ge~v-~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1         110 PRTGQKL-VEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             TTTCCCC-EEESSCCHHHHHHHHHHHH
T ss_pred             CCCCeEe-cccCCCCHHHHHHHHHHHH
Confidence              56665 5567789999999998876

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.57  E-value=8e-15  Score=106.34  Aligned_cols=70  Identities=26%  Similarity=0.501  Sum_probs=59.2

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCCh------------------------HHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSP------------------------NIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~I  146 (182)
                      .+++|+|+|||+||++|+.+.|.++++++++.+  .+.++.|+.|+..                        .+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            589999999999999999999999999999865  4788888887554                        26778999


Q ss_pred             CcccEEEEEE-C-CeEEE
Q 030165          147 RSIPTVLFFK-N-GEKKE  162 (182)
Q Consensus       147 ~~iPTl~~f~-~-G~~v~  162 (182)
                      .++||++++. + |+++.
T Consensus       107 ~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCcCEEEEEeCCCCEEEe
Confidence            9999999995 5 66654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.55  E-value=1.7e-14  Score=104.30  Aligned_cols=71  Identities=24%  Similarity=0.556  Sum_probs=59.8

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCCh------------------------HHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSP------------------------NIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~I  146 (182)
                      .+++++|+|||+||++|+...|.|++++++|..  ++.++.|+.|+..                        ++.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            589999999999999999999999999999953  4888888886543                        26788999


Q ss_pred             CcccEEEEEE-C-CeEEEE
Q 030165          147 RSIPTVLFFK-N-GEKKES  163 (182)
Q Consensus       147 ~~iPTl~~f~-~-G~~v~~  163 (182)
                      +++||++++. + |+.+.+
T Consensus       107 ~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         107 ESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CcCCEEEEEECCCCEEEee
Confidence            9999999996 5 666543

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-15  Score=107.47  Aligned_cols=105  Identities=19%  Similarity=0.359  Sum_probs=74.0

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHH--hcCceEEEEEeCCCChHHHHHc-CCCcccEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKE--YAGKVACFKLNTDDSPNIATKY-GIRSIPTVL  153 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~--~~~~v~~~~vd~d~~~~l~~~~-~I~~iPTl~  153 (182)
                      .+...+-++-.+....++|+++|+|||+||++|+.+.|.+.+..+.  ...++..+.+|.++..++...+ ...++||++
T Consensus         8 ~i~w~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~   87 (135)
T d1sena_           8 HIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL   87 (135)
T ss_dssp             TSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEE
T ss_pred             ceeeeEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEE
Confidence            3444444444444667899999999999999999999988544432  3356888899988777766543 455789999


Q ss_pred             EEE-CCeEEEEEEc----------CCCHHHHHHHHHHHh
Q 030165          154 FFK-NGEKKESIIG----------AVPKSTLSSTLDKYV  181 (182)
Q Consensus       154 ~f~-~G~~v~~~~G----------~~~~~~l~~~l~~~l  181 (182)
                      ++. +|+.+..+.|          ..+.+++.+.+++.+
T Consensus        88 ~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~  126 (135)
T d1sena_          88 FLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  126 (135)
T ss_dssp             EECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             EECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHH
Confidence            994 8988777666          234566655555543

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.47  E-value=2e-13  Score=98.00  Aligned_cols=70  Identities=21%  Similarity=0.465  Sum_probs=59.0

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc--eEEEEEeCCCCh------------------------HHHHHcCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK--VACFKLNTDDSP------------------------NIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~--v~~~~vd~d~~~------------------------~l~~~~~I  146 (182)
                      .+++++|+||++||++|+...|.+.+++++|..+  +.++.++.|+..                        .+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            5799999999999999999999999999999653  788888876543                        37788999


Q ss_pred             CcccEEEEEE-C-CeEEE
Q 030165          147 RSIPTVLFFK-N-GEKKE  162 (182)
Q Consensus       147 ~~iPTl~~f~-~-G~~v~  162 (182)
                      +++||++++. + |+++.
T Consensus       105 ~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEeCCCCEEEE
Confidence            9999999996 6 55543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.42  E-value=5.3e-13  Score=99.17  Aligned_cols=103  Identities=20%  Similarity=0.386  Sum_probs=76.8

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC--ChH---------------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD--SPN---------------  139 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~--~~~---------------  139 (182)
                      +..++++.+.. ..-.++++||+||++||++|+...+.+.++.+++.+ ++.++.+..+.  ..+               
T Consensus        41 l~d~~G~~v~L-~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  119 (176)
T d1jfua_          41 FEDADGKPKKL-SDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGY  119 (176)
T ss_dssp             EECTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCC
T ss_pred             EECCCcCEEeH-HHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceee
Confidence            45555555543 223679999999999999999999999999988854 46667776542  111               


Q ss_pred             -----------HHHHcCCCcccEEEEE-ECCeEEEEEEcCC--CHHHHHHHHHHHh
Q 030165          140 -----------IATKYGIRSIPTVLFF-KNGEKKESIIGAV--PKSTLSSTLDKYV  181 (182)
Q Consensus       140 -----------l~~~~~I~~iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l~~~l  181 (182)
                                 +...|++.++|+++++ ++|+++.++.|..  +.+++.+.|+.++
T Consensus       120 ~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         120 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             EECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             eecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                       1223567789998888 6999999999965  5688999999886

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.31  E-value=2.4e-12  Score=94.96  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             EcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEE
Q 030165           80 VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKY---GIRSIPTVLFFK  156 (182)
Q Consensus        80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~---~I~~iPTl~~f~  156 (182)
                      .++++..+++..-.++.+++.||++||++|++..|.++++++.++ ++.+..|+.|++++...+|   +...+|+++++.
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d  118 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeecC
Confidence            356666665433367788999999999999999999999999987 5899999999999999998   555788888885


Q ss_pred             -CCeEEEEEEc
Q 030165          157 -NGEKKESIIG  166 (182)
Q Consensus       157 -~G~~v~~~~G  166 (182)
                       +++...++.+
T Consensus       119 ~~~~~~~~~~~  129 (166)
T d1z6na1         119 EEFNLLGRFVE  129 (166)
T ss_dssp             TTCCEEEEEES
T ss_pred             ccchhcccccc
Confidence             5666666654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.3e-09  Score=79.23  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC---------------------CChHHHHHcCCCccc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD---------------------DSPNIATKYGIRSIP  150 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d---------------------~~~~l~~~~~I~~iP  150 (182)
                      .++.|+++|| +.||++|....+.|.+...++...+.++.|+.|                     .+.++++.||+...|
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~  111 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  111 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccc
Confidence            3556666667 899999999999999999999877778888764                     344688889987666


Q ss_pred             ------EEEEEECCeEEEEEEcCCCH
Q 030165          151 ------TVLFFKNGEKKESIIGAVPK  170 (182)
Q Consensus       151 ------Tl~~f~~G~~v~~~~G~~~~  170 (182)
                            +++++.||+.+.++.|..+.
T Consensus       112 ~~~~~r~~~i~~dg~i~~~~~~~~~~  137 (156)
T d2a4va1         112 LSGSIRSHFIFVDGKLKFKRVKISPE  137 (156)
T ss_dssp             SSCBCCEEEEEETTEEEEEEESCCHH
T ss_pred             cCCeeEEEEEEECCeEEEEEEEeCCC
Confidence                  56666899999999887653

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=9.4e-10  Score=79.92  Aligned_cols=82  Identities=21%  Similarity=0.361  Sum_probs=63.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      ..+.+|+.|..+.|++|+++.|.++++.+.   ++.++....                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            467799999999999999999999988653   344433332                                      


Q ss_pred             ------CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHHHh
Q 030165          135 ------DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       135 ------d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                            +++.++++++||+++||++ +.||+.   +.|..+.++|.++|++.+
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEE-EeCCeE---ecCCCCHHHHHHHHHHHH
Confidence                  1223588999999999964 468864   579999999999999865

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.91  E-value=5.6e-09  Score=75.40  Aligned_cols=90  Identities=10%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             cCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCC-
Q 030165           92 SSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD---------------------DSPNIATKYGIR-  147 (182)
Q Consensus        92 ~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d---------------------~~~~l~~~~~I~-  147 (182)
                      ..++++||.|| +.||++|....+.+.++.+++.+ .+.++.+..+                     .+..+++.||+. 
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  107 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence            46789999998 99999999999999998888765 3677777654                     334578888883 


Q ss_pred             ---------cccEEEEE-ECCeEEEEEEcC-----CCHHHHHHHHHHHh
Q 030165          148 ---------SIPTVLFF-KNGEKKESIIGA-----VPKSTLSSTLDKYV  181 (182)
Q Consensus       148 ---------~iPTl~~f-~~G~~v~~~~G~-----~~~~~l~~~l~~~l  181 (182)
                               ..|+++++ ++|+++..+.+.     .+.+++.+.+++++
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence                     46777777 699988877653     24567777777765

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.84  E-value=4.2e-09  Score=76.90  Aligned_cols=87  Identities=17%  Similarity=0.285  Sum_probs=71.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--C---------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--S---------------------------------  137 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~---------------------------------  137 (182)
                      +.++.||.|....|++|+.+.+.+.++.+++.+.+.+......-  .                                 
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            46789999999999999999999999999998777666654410  0                                 


Q ss_pred             ----------------------------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          138 ----------------------------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       138 ----------------------------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                                                              ..+++++||+++||+++  ||+.+....|..+.++|.+.|
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                    02667799999999988  998766667788999999999


Q ss_pred             HHHh
Q 030165          178 DKYV  181 (182)
Q Consensus       178 ~~~l  181 (182)
                      +.|+
T Consensus       175 ~~L~  178 (181)
T d1beda_         175 NYLL  178 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=1.5e-08  Score=74.14  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC-------------------------CChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD-------------------------DSPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d-------------------------~~~~l~~~~~  145 (182)
                      .++++||+|| +.||+.|....+.|.+..+++.. .+.++.++.+                         .+.++++.||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            4689999999 99999999999999999999975 4788888764                         3446889999


Q ss_pred             C-----CcccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          146 I-----RSIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       146 I-----~~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      |     ...|+.+++ ++|++.....+..    ..+++.+.|+.+
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8     678887777 5898877665432    456777777765

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.79  E-value=1.9e-09  Score=77.88  Aligned_cols=82  Identities=20%  Similarity=0.384  Sum_probs=62.5

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNT--------------------------------------  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~--------------------------------------  134 (182)
                      +.+.+|+.|..+.||+|+.+.+.++++.+... .+.++....                                      
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            45678999999999999999999999876432 233332221                                      


Q ss_pred             ----CCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          135 ----DDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       135 ----d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                          +++.++++++||+++||+++ .||+   .+.|..+.++|+++|++
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence                11235789999999999865 5786   56899999999999986

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.2e-08  Score=73.78  Aligned_cols=91  Identities=11%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCCCC--------hHH---HH------HcCC-------
Q 030165           92 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGK-VACFKLNTDDS--------PNI---AT------KYGI-------  146 (182)
Q Consensus        92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~-v~~~~vd~d~~--------~~l---~~------~~~I-------  146 (182)
                      -.++++||.+||+|||+|.+.-+.|+++.++|.++ +.++.+.+++-        .++   ++      .|++       
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~k  101 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK  101 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhhhhheecccccccccccccee
Confidence            36899999999999999999889999999999754 78887766531        122   21      1221       


Q ss_pred             -----------------------------Cccc-----------------E-EEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          147 -----------------------------RSIP-----------------T-VLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       147 -----------------------------~~iP-----------------T-l~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                                   .+.|                 | +++-++|+.+.++.+..+++++++.|++
T Consensus       102 i~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~rf~~~~~p~~i~~~Ie~  181 (184)
T d2f8aa1         102 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA  181 (184)
T ss_dssp             CCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             eeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence                                         1122                 2 4555899999999999999999999999


Q ss_pred             HhC
Q 030165          180 YVE  182 (182)
Q Consensus       180 ~l~  182 (182)
                      +|+
T Consensus       182 lL~  184 (184)
T d2f8aa1         182 LLS  184 (184)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            985

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.7e-08  Score=74.06  Aligned_cols=81  Identities=16%  Similarity=0.310  Sum_probs=63.4

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC---------------------------------------
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD---------------------------------------  135 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d---------------------------------------  135 (182)
                      +.+|+.|..+.||+|+.+.+.++++.+..  ++.+..++..                                       
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            35689999999999999999999987654  4666666551                                       


Q ss_pred             -----------CChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165          136 -----------DSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus       136 -----------~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                                 ++.++++++||+++||+++...+.....+.|..+.+.|.+.+
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence                       112477889999999999876555667899999998887654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.72  E-value=3.2e-08  Score=72.17  Aligned_cols=88  Identities=18%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++||+|| +.||++|....+.|.+..+++.. .+.++.|+.|.                            ...++.
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            4689999999 99999999999999999999976 57788887753                            234778


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .|++.      .+|+.+++ ++|++...+.+..    +.+++.+.|+.+
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence            88872      35666666 5998877765433    457777777654

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.64  E-value=1.5e-07  Score=68.06  Aligned_cols=80  Identities=23%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             CcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCC-----------------------------------
Q 030165           95 NPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDS-----------------------------------  137 (182)
Q Consensus        95 ~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~-----------------------------------  137 (182)
                      +..|+.|+...|++|+.+.+.+.++.+++..  ++.++.......                                   
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  104 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccc
Confidence            4469999999999999999999999988864  355554443111                                   


Q ss_pred             -------------------------------hHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          138 -------------------------------PNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       138 -------------------------------~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                                                     .+.++++||+++||+++  ||+.   +.|..+.+++.++|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         105 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK  172 (172)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence                                           02456799999999877  9974   5799999999999874

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.63  E-value=9.8e-08  Score=69.78  Aligned_cols=88  Identities=16%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             CCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCCC-------------------------hHHHHHcC
Q 030165           93 SENPVLVEFWAP-WCGPCRMIAPAIEELAKEYAG-KVACFKLNTDDS-------------------------PNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~~-------------------------~~l~~~~~  145 (182)
                      .++.+||.||.. ||++|....+.|.+.++++.. .+.++.|..|..                         ..+++.||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            468899999955 999999999999999999854 588888887542                         24788898


Q ss_pred             CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      +.      ..|+.+++ ++|++.....+..    +.+++.+.|+.+
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal  155 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA  155 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhc
Confidence            85      45555555 6898877776654    456666666543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-07  Score=64.73  Aligned_cols=90  Identities=12%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhcC-----ceEEEEEeCCCCh----------------------------
Q 030165           93 SENPVLVEFWAPWCG-PCRMIAPAIEELAKEYAG-----KVACFKLNTDDSP----------------------------  138 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~~-----~v~~~~vd~d~~~----------------------------  138 (182)
                      .+|++||+||.+||+ .|....+.+.++.+++..     .+.+..+..+...                            
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            589999999999996 799888888888877542     2444444432211                            


Q ss_pred             HHHHHcCCCcc---------------cEEEEE-ECCeEEEEEEcCCCHHHHHHHHHHHhC
Q 030165          139 NIATKYGIRSI---------------PTVLFF-KNGEKKESIIGAVPKSTLSSTLDKYVE  182 (182)
Q Consensus       139 ~l~~~~~I~~i---------------PTl~~f-~~G~~v~~~~G~~~~~~l~~~l~~~l~  182 (182)
                      .+...|++...               ++++++ ++|+.+.++.+..+++++.+.|+++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            24555665433               566666 699999999888899999999999874

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.53  E-value=1.4e-07  Score=66.22  Aligned_cols=103  Identities=10%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             ccEEcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEE
Q 030165           77 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIR--SIPTVLF  154 (182)
Q Consensus        77 ~v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~--~iPTl~~  154 (182)
                      -+.+++.+++.. ....+++.++.|+... .....+...|.++|+++.+++.|+.+|.++.....+.||+.  ..|.+++
T Consensus         7 Lv~e~~~~n~~~-~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i   84 (133)
T d2djka1           7 LIGEIGPETYSD-YMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             CSEECCHHHHHH-HHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred             ceeccChhhHHH-HhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEE
Confidence            367899999998 4467889999898765 35577889999999999999999999999999889999984  6899998


Q ss_pred             EE-CCeEEEEE--EcCCCHHHHHHHHHHHh
Q 030165          155 FK-NGEKKESI--IGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       155 f~-~G~~v~~~--~G~~~~~~l~~~l~~~l  181 (182)
                      +. +++....+  .+..+.+.+.+|+++++
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~  114 (133)
T d2djka1          85 QEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             ECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             EEcCCCceecCCccccCCHHHHHHHHHHHH
Confidence            84 33333222  35678999999999876

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=6.4e-07  Score=62.36  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=80.6

Q ss_pred             EcChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCc-ccEEEEEEC-
Q 030165           80 VVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRS-IPTVLFFKN-  157 (182)
Q Consensus        80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~-iPTl~~f~~-  157 (182)
                      +++.+++...+ .++.|+++.|+.+. ..-..+...+.++|+++.+++.|+.+|.++....++.||+.. .|.+++... 
T Consensus         4 ei~~~~~~~y~-~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~   81 (125)
T d2b5ea3           4 EIDGSVFAQYV-ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT   81 (125)
T ss_dssp             BCCHHHHHHHH-HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred             ccCHHHHHHHH-hcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence            57888998844 68899999999874 334578889999999999999999999999888999999864 899988852 


Q ss_pred             CeEEEEE-------------EcCCCHHHHHHHHHHHh
Q 030165          158 GEKKESI-------------IGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       158 G~~v~~~-------------~G~~~~~~l~~~l~~~l  181 (182)
                      +......             .+..+.+.|.+|+++++
T Consensus        82 ~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l  118 (125)
T d2b5ea3          82 EDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFL  118 (125)
T ss_dssp             TTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHH
T ss_pred             cCcccccchhhhhhcccccccccCCHHHHHHHHHHHH
Confidence            2222222             25678999999999886

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=6.3e-07  Score=65.53  Aligned_cols=88  Identities=16%  Similarity=0.352  Sum_probs=64.0

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYA-GKVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~-~~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++|++|| +.||+.|....+.|.+..+++. ..+.++.|+.|.                            ..++.+
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            3568999999 9999999999999999888875 347788887653                            335788


Q ss_pred             HcCCC-----cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR-----SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~-----~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.     ..|+.+++ ++|++.....+..    +.+++.+.|+.+
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            89984     45655555 6888876665443    355566665544

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.2e-07  Score=69.52  Aligned_cols=42  Identities=19%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHHHH---HHHhcCceEEEEEeC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIEEL---AKEYAGKVACFKLNT  134 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~~~---a~~~~~~v~~~~vd~  134 (182)
                      .++++||.|+.-.|++|+.+.+.+..+   ...+.+.+.+.....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            356789999999999999999987444   344455567766654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.43  E-value=7.7e-07  Score=64.24  Aligned_cols=88  Identities=14%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~  142 (182)
                      .++++|++|| +.||+.|....+.|.+..+++.. +..++.|..|.                            ...+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            3689999999 99999999999999999988853 47777777642                            235788


Q ss_pred             HcCCCc------ccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIRS------IPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~~------iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+..      .++.+++ ++|++.....+..    +.+++.+.|+.+
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            899863      4444455 7998877666544    357777777743

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.42  E-value=1.3e-06  Score=67.26  Aligned_cols=90  Identities=11%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             HcCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHH
Q 030165           91 ISSENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD---------------------------SPNIA  141 (182)
Q Consensus        91 ~~~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~---------------------------~~~l~  141 (182)
                      ...++.+|++|| ++||+.|....+.|.+.++++.. .+.++.+.+|.                           +.+++
T Consensus        26 ~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          26 VSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             HTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             hcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            346788999998 99999999999999999888864 47888887653                           34588


Q ss_pred             HHcCC-------CcccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          142 TKYGI-------RSIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       142 ~~~~I-------~~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      +.||+       ...|+++++ ++|++.....+..    +.+++.+.|+.+
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            89998       467887777 5888777665433    577888887754

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.39  E-value=1.4e-06  Score=65.06  Aligned_cols=88  Identities=9%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD----------------------------DSPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d----------------------------~~~~l~~  142 (182)
                      .++.+|++|| ++||+.|....+.|.++.+++.. .+.++.|+.|                            ...++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            3689999999 99999999999999999999875 5888888765                            3346899


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      ..|+.+++ ++|++........    ..+++.+.|+.+
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99993      35655555 6898877765433    467777776654

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=6.1e-07  Score=64.00  Aligned_cols=88  Identities=13%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             CCcEEEE-EEcCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165           94 ENPVLVE-FWAPWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-----------------------SPNIATKYGIRS  148 (182)
Q Consensus        94 ~~~vlV~-F~a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-----------------------~~~l~~~~~I~~  148 (182)
                      ++++|+. ||+.||++|....+.+.+..+++.+ ++.++.++.|.                       ...+++.||+..
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~  108 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN  108 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhh
Confidence            3555554 5599999999999999998888865 47888777643                       335778888742


Q ss_pred             ------ccEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHHh
Q 030165          149 ------IPTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKYV  181 (182)
Q Consensus       149 ------iPTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~l  181 (182)
                            .|+.+++ ++|++.....+.    .+..++.+.|+.+.
T Consensus       109 ~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1         109 EQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             TTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             hccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence                  3455555 699887665532    24677877777653

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.35  E-value=4.8e-07  Score=62.62  Aligned_cols=90  Identities=19%  Similarity=0.331  Sum_probs=71.3

Q ss_pred             HcCCCcEEEEEEc--CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEECCeEE-EEEE
Q 030165           91 ISSENPVLVEFWA--PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD--SPNIATKYGIRSIPTVLFFKNGEKK-ESII  165 (182)
Q Consensus        91 ~~~~~~vlV~F~a--~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~--~~~l~~~~~I~~iPTl~~f~~G~~v-~~~~  165 (182)
                      ..-.+||-+.++.  +.|..|..+...++++++.- +++.+...+.+.  +.+++++|+|+..|+++++++|+.. .++.
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-dki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~   96 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYF   96 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEE
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-CCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEE
Confidence            3456777555554  56999999999999998664 568877777654  5789999999999999999888653 4888


Q ss_pred             cCCCHHHHHHHHHHHh
Q 030165          166 GAVPKSTLSSTLDKYV  181 (182)
Q Consensus       166 G~~~~~~l~~~l~~~l  181 (182)
                      |...-.+|..+|..++
T Consensus        97 GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          97 GLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             SCCCTTHHHHHHHHHH
T ss_pred             eccCchhHHHHHHHHH
Confidence            9888888988888765

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=5.7e-07  Score=65.29  Aligned_cols=74  Identities=15%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCC-
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIR-  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~-  147 (182)
                      .++++|+.|| +.||++|....+.|++.+.++.+ +.++.|..|                       .+.++++.||+. 
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~  121 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAI  121 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBB
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEe
Confidence            5788888888 77999999999999999888764 777777653                       344688889874 


Q ss_pred             --------cccEEEEE-ECCeEEEEEEcC
Q 030165          148 --------SIPTVLFF-KNGEKKESIIGA  167 (182)
Q Consensus       148 --------~iPTl~~f-~~G~~v~~~~G~  167 (182)
                              ..|+++++ ++|+++....+.
T Consensus       122 ~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_         122 ADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             ecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence                    23666666 689987765543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.30  E-value=2.2e-06  Score=54.36  Aligned_cols=72  Identities=21%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL  177 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l  177 (182)
                      |..|..++|+.|.+....+.+    .. .+.+..+|+++++++.++||.+ ||.+++  +|+..  ..-..+++++.+||
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~-~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~~~~--l~w~fd~~~l~~~L   71 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----AR-AGAFFSVFIDDDAALESAYGLR-VPVLRD--PMGRE--LDWPFDAPRLRAWL   71 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TT-CCCEEEEECTTCHHHHHHHTTT-CSEEEC--TTCCE--EESCCCHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----cc-CCcEEEEEccCCHHHHHHhCCe-eeEEEE--CCeeE--EcCccCHHHHHHHH
Confidence            567899999999887655543    22 3788999999999999999977 897653  44332  22346999999998


Q ss_pred             HH
Q 030165          178 DK  179 (182)
Q Consensus       178 ~~  179 (182)
                      +.
T Consensus        72 ~~   73 (75)
T d1ttza_          72 DA   73 (75)
T ss_dssp             HT
T ss_pred             hc
Confidence            74

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=4.8e-06  Score=60.42  Aligned_cols=88  Identities=16%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHhc---CceEEEEEeCCC---ChHH----HHH------------------
Q 030165           93 SENPVLVEFWAPWCG-PCRMIAPAIEELAKEYA---GKVACFKLNTDD---SPNI----ATK------------------  143 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~~a~~~~---~~v~~~~vd~d~---~~~l----~~~------------------  143 (182)
                      .++++||+||..||+ .|....+.+.++.+.+.   .++.++.|.+|.   .++.    +++                  
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~  109 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  109 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccchHHH
Confidence            589999999999997 69999999999888774   358888887752   2221    111                  


Q ss_pred             --------cCCC-----------cccEEEEE-ECCeEEEEEEcCC--CHHHHHHHHHHH
Q 030165          144 --------YGIR-----------SIPTVLFF-KNGEKKESIIGAV--PKSTLSSTLDKY  180 (182)
Q Consensus       144 --------~~I~-----------~iPTl~~f-~~G~~v~~~~G~~--~~~~l~~~l~~~  180 (182)
                              |++.           ..|.++++ ++|+.+..+.|..  +.+++.+-|+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~~  168 (172)
T d1xzoa1         110 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA  168 (172)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence                    2211           12456666 6999998888864  457777777654

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.26  E-value=3.2e-06  Score=53.09  Aligned_cols=67  Identities=15%  Similarity=0.260  Sum_probs=49.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH---HHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN---IATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~---l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ++.|..+||++|.+....|++.      ++.+..+|++++++   ..+.+|.+++|++++  ||+.    +|..+++.|.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~----igGf~~d~l~   70 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH----WSGFRPERIK   70 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE----EESCCHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEE----EeCCCHhHHH
Confidence            5779999999999999888653      37888888888765   346789999998754  8853    3334666665


Q ss_pred             HH
Q 030165          175 ST  176 (182)
Q Consensus       175 ~~  176 (182)
                      +.
T Consensus        71 ~L   72 (74)
T d1r7ha_          71 QL   72 (74)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.21  E-value=3.8e-06  Score=53.44  Aligned_cols=72  Identities=24%  Similarity=0.482  Sum_probs=57.5

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCC-CHHHHHHHH
Q 030165           99 VEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAV-PKSTLSSTL  177 (182)
Q Consensus        99 V~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~-~~~~l~~~l  177 (182)
                      |....+.|..|.++....+++++++.-...+.++  ++-.++. +|||-++|.+++  ||+.  .+.|.. +.+++.+||
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~v--v~~G~vPs~~ei~~~L   76 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGEL--KIMGRVASKEEIKKIL   76 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTEE--EECSSCCCHHHHHHHC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence            4455899999999999999999988755665555  5666776 699999999998  9976  455754 889998886

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.20  E-value=3.2e-06  Score=61.04  Aligned_cols=86  Identities=7%  Similarity=0.054  Sum_probs=59.7

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD-----------------------SPNIATKYGIRS  148 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~I~~  148 (182)
                      .++++||.|| +.||+.|....+.|.+...++.+ +.++.|..+.                       ..++...||+..
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeec
Confidence            5688888888 78999999999999888888864 7788787642                       224677888742


Q ss_pred             ----c--cEEEEE-ECCeEEEEEEcCC-----CHHHHHHHHHH
Q 030165          149 ----I--PTVLFF-KNGEKKESIIGAV-----PKSTLSSTLDK  179 (182)
Q Consensus       149 ----i--PTl~~f-~~G~~v~~~~G~~-----~~~~l~~~l~~  179 (182)
                          +  ++++++ ++|++.....+..     +.+.+.++|++
T Consensus       120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence                2  234444 6999876654432     23566666654

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.14  E-value=1.4e-05  Score=59.03  Aligned_cols=88  Identities=11%  Similarity=0.094  Sum_probs=65.2

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD-------------------------SPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~  145 (182)
                      .++.+|++|| +.||+.|....+.|.+..+++.. .+.++.|..|.                         +.++++.||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            4688999999 89999999999999999988863 57777777643                         335888899


Q ss_pred             CC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          146 IR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       146 I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      +.      ..|+.+++ ++|++.......+    +.+++.+.|+.+
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            84      34555555 6888766654433    567777777654

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=5.2e-06  Score=52.42  Aligned_cols=65  Identities=18%  Similarity=0.290  Sum_probs=49.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH---HHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI---ATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS  174 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l---~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~  174 (182)
                      ++.|..+||++|......|++.      ++.+..+|++++++.   .+..|.+++|.+++  +|+.   +.| ..++.+.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~---i~G-f~~d~i~   70 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS---WSG-FRPDMIN   70 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE---EES-CCHHHHG
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE---EEC-CCHHHHH
Confidence            5678999999999999888664      378888999988764   34569999999876  7743   334 5566554

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=6.8e-06  Score=57.89  Aligned_cols=103  Identities=9%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             cEEcChhhHHHHHHcCCCcEEEEEEcCCChh-hhhhhHHHHHHHHHh----cCceEEEEEeCCCCh---H----------
Q 030165           78 VQVVTDSSWENLVISSENPVLVEFWAPWCGP-CRMIAPAIEELAKEY----AGKVACFKLNTDDSP---N----------  139 (182)
Q Consensus        78 v~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~-C~~~~p~l~~~a~~~----~~~v~~~~vd~d~~~---~----------  139 (182)
                      +...+++.+.. ..-.+|++||.||..||+. |......+..+...+    ...+.+..+..+...   +          
T Consensus        11 l~d~~G~~vsl-~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (169)
T d2b7ka1          11 LEDMYGNEFTE-KNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFH   89 (169)
T ss_dssp             EEETTSCEEEG-GGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSC
T ss_pred             EEeCCCCEECH-HHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhcccc
Confidence            45555555543 3336899999999999964 555555554444433    223444444432211   0          


Q ss_pred             ---------------HH----------------HHcCCCcccEEEEE-ECCeEEEEEEcCCCHHH----HHHHHHHHh
Q 030165          140 ---------------IA----------------TKYGIRSIPTVLFF-KNGEKKESIIGAVPKST----LSSTLDKYV  181 (182)
Q Consensus       140 ---------------l~----------------~~~~I~~iPTl~~f-~~G~~v~~~~G~~~~~~----l~~~l~~~l  181 (182)
                                     ..                ..|.|...|+++++ ++|+.+.++.+..+++.    +.+.|+++|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1          90 PSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             ccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence                           11                12456678887777 69999999888777664    556666554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.03  E-value=1.2e-05  Score=58.50  Aligned_cols=87  Identities=16%  Similarity=0.305  Sum_probs=65.4

Q ss_pred             CCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHHH
Q 030165           94 ENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTDD----------------------------SPNIATK  143 (182)
Q Consensus        94 ~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d~----------------------------~~~l~~~  143 (182)
                      ++++||.|| +.||+.|......|.+.++++.. .+.++.|+.|.                            ...+++.
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  106 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  106 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence            578999999 89999999999999999988864 58888888763                            2368889


Q ss_pred             cCCC-----cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          144 YGIR-----SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       144 ~~I~-----~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      ||+.     ..++.+++ ++|.+...+.+..    +.+++.+.|+.+
T Consensus       107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            9983     34555555 6888877776554    346677776654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.6e-06  Score=55.04  Aligned_cols=74  Identities=14%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHc--CCCcccEEEEEECCeEEEEEEcCCCHH
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDS----PNIATKY--GIRSIPTVLFFKNGEKKESIIGAVPKS  171 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~----~~l~~~~--~I~~iPTl~~f~~G~~v~~~~G~~~~~  171 (182)
                      +|.|..+||++|++....|+++...+.+ +.+..+|.+.+    ..+.+..  +++++|.+++  ||+.+   .|.   +
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I---GG~---~   73 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI---GGY---T   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE---ESS---H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE---ECH---H
Confidence            6779999999999999999999988875 78888876533    3444443  4578999755  88533   333   4


Q ss_pred             HHHHHHHHH
Q 030165          172 TLSSTLDKY  180 (182)
Q Consensus       172 ~l~~~l~~~  180 (182)
                      +|.+++++-
T Consensus        74 el~~~~~~~   82 (85)
T d1egoa_          74 DFAAWVKEN   82 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            577776654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=2.1e-05  Score=56.72  Aligned_cols=71  Identities=13%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCC----------------------ChHHHHHcCCC--
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTDD----------------------SPNIATKYGIR--  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~----------------------~~~l~~~~~I~--  147 (182)
                      .++++|+.|| +.||+.|....+.|++..+++.  +.++.|..|.                      +..+...||+.  
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  119 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  119 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeec
Confidence            5789999999 5588889999998888777664  5666666543                      23466777764  


Q ss_pred             -------cccEEEEE-ECCeEEEEEE
Q 030165          148 -------SIPTVLFF-KNGEKKESII  165 (182)
Q Consensus       148 -------~iPTl~~f-~~G~~v~~~~  165 (182)
                             ..|+++++ ++|+++....
T Consensus       120 ~~~~~g~~~ra~fvID~~G~I~y~~~  145 (166)
T d1xvqa_         120 DGPMAGLLARAIVVIGADGNVAYTEL  145 (166)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             cCcccCceeeEEEEEeCCCEEEEEEE
Confidence                   13555555 6999886654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.3e-05  Score=55.94  Aligned_cols=88  Identities=10%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD----------------------------DSPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d----------------------------~~~~l~~  142 (182)
                      .++.+|++|| +.||+.|......|.+..+++.. .+.++.|..|                            ...++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            3689999999 99999999999999999999875 5888888764                            3335889


Q ss_pred             HcCCC------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          143 KYGIR------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      .||+.      ..++.+++ ++|.+.......+    +.+++.+.|+.+
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            99985      35555555 5888776655543    467777776654

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00022  Score=53.81  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC-------------------------------CChH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD-------------------------------DSPN  139 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d-------------------------------~~~~  139 (182)
                      .++++|++|| +.||+.|......|.+..+++.. .+.++.+.+|                               .+.+
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            4678999999 88999999999999999999875 4777777654                               3346


Q ss_pred             HHHHcCCC------------cccEEEEE-ECCeEEEEEEcCC----CHHHHHHHHHHH
Q 030165          140 IATKYGIR------------SIPTVLFF-KNGEKKESIIGAV----PKSTLSSTLDKY  180 (182)
Q Consensus       140 l~~~~~I~------------~iPTl~~f-~~G~~v~~~~G~~----~~~~l~~~l~~~  180 (182)
                      +++.||+-            ...+++++ ++|.+........    +.+++.+.|+.+
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            88999985            34556666 6888877666433    577777777654

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.81  E-value=1.7e-05  Score=53.12  Aligned_cols=66  Identities=21%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             HcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH-----HHHHcCCCcccEEEEEECCeEE
Q 030165           91 ISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN-----IATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~-----l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      ..+++  +|.|..+||++|+.....|+++.-.+.. +.+..+|.+.+..     +.+..|.+.+|.+++  +|+.+
T Consensus         9 i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~~-~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~~I   79 (105)
T d1ktea_           9 IQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEGL-LEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECI   79 (105)
T ss_dssp             CCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTTS-EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEE
T ss_pred             hccCC--EEEEECCCCchHHHHHHHHHHhCCccce-eeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCEEE
Confidence            34455  6679999999999999988876544432 6777777776543     233458899998855  88643

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=6.3e-05  Score=54.09  Aligned_cols=74  Identities=9%  Similarity=0.215  Sum_probs=54.5

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCC-
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAGKVACFKLNTD-----------------------DSPNIATKYGIR-  147 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d-----------------------~~~~l~~~~~I~-  147 (182)
                      .++++|+.|| +.||+.|....+.|++..+++.+ +.++.|..|                       ....+...|++. 
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  119 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  119 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhceec
Confidence            4688999999 56788899999999999999875 777777664                       233567778774 


Q ss_pred             ------c--ccEEEEE-ECCeEEEEEEcC
Q 030165          148 ------S--IPTVLFF-KNGEKKESIIGA  167 (182)
Q Consensus       148 ------~--iPTl~~f-~~G~~v~~~~G~  167 (182)
                            +  .|+++++ ++|+++......
T Consensus       120 ~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_         120 QTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             ccCccccCcccEEEEECCCCEEEEEEECC
Confidence                  2  2666666 699888766543

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.71  E-value=7.4e-05  Score=47.46  Aligned_cols=55  Identities=13%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEECCeE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPN----IATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~----l~~~~~I~~iPTl~~f~~G~~  160 (182)
                      |..|..+||++|++....|++.      ++.+..+|++++++    +.+..|.+++|.+++  +|+.
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~~   61 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQH   61 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence            5568899999999998888664      36777888887654    445569999998754  8864

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=9.9e-05  Score=45.93  Aligned_cols=56  Identities=14%  Similarity=0.303  Sum_probs=41.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEECCeEE
Q 030165           98 LVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP---NIATKYGIRSIPTVLFFKNGEKK  161 (182)
Q Consensus        98 lV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~---~l~~~~~I~~iPTl~~f~~G~~v  161 (182)
                      |+.|+.+||++|++....|++.      ++.+..+|++++.   .+.+..|.+++|.+++  +|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCEEE
Confidence            5678999999999999888765      2666667766543   3455678999998754  88543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.13  E-value=0.0022  Score=48.10  Aligned_cols=88  Identities=9%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHH
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPAIEELAKEYAG-KVACFKLNTD----------------------------DSPNIAT  142 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~~a~~~~~-~v~~~~vd~d----------------------------~~~~l~~  142 (182)
                      .++.+|++|| +.||+.|......|.+..+++.. ++.++.+.+|                            .+.++++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            5789999999 99999999999999999988875 4777777764                            3336888


Q ss_pred             HcCCCc----------c--cEEEEE-ECCeEEEEEEcC----CCHHHHHHHHHHH
Q 030165          143 KYGIRS----------I--PTVLFF-KNGEKKESIIGA----VPKSTLSSTLDKY  180 (182)
Q Consensus       143 ~~~I~~----------i--PTl~~f-~~G~~v~~~~G~----~~~~~l~~~l~~~  180 (182)
                      .||+-.          +  -+++++ .+|++.......    .+.+++.+.|+.+
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            999831          2  355555 588876654432    3567777777654

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0019  Score=42.97  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCe-E
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE-K  160 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~-~  160 (182)
                      +.++.+. .+..+..+||-|+.+-=.   .....|.++++.+. .+.|+.+.   +.++++.+|+.. |++++|++.. .
T Consensus         7 ~~~~~e~-f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~-d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~de~   77 (110)
T d1bjxa_           7 DGAAAES-LVESSEVAVIGFFKDVES---DSAKQFLQAAEAID-DIPFGITS---NSDVFSKYQLDK-DGVVLFKKFDEG   77 (110)
T ss_dssp             SHHHHHH-HHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCS-SSCEEEEC---CSHHHHHTTCSS-CEEEEEESSSSS
T ss_pred             CHHHHHH-HhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCc-CceEEEEC---CHHHHHHcCCCC-CeEEEeccCCcc
Confidence            4455666 456677888888876332   35567899999985 47776554   456899999976 9999998543 3


Q ss_pred             EEEEEcCCCHHHHHHHHHHH
Q 030165          161 KESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~~~~~~l~~~l~~~  180 (182)
                      ...+.|..+.+.|.+||...
T Consensus        78 ~~~~~~~~~~~~l~~fi~~~   97 (110)
T d1bjxa_          78 RNNFEGEVTKENLLDFIKHN   97 (110)
T ss_dssp             BCCCCSCCCHHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHc
Confidence            33456788999999999853

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.91  E-value=0.0044  Score=40.81  Aligned_cols=92  Identities=12%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             ChhhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECC-eE
Q 030165           82 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNG-EK  160 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G-~~  160 (182)
                      +.++++..+...+..+||=|+..-=+.   ....|.++|+.+.+.+.|+...   +.+++++|||. .|++++|++= +.
T Consensus         6 ~~~e~~~F~~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlfr~fde~   78 (102)
T d1a8ya2           6 GERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFYEAFMEE   78 (102)
T ss_dssp             SHHHHHHHTTCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEECTTCSS
T ss_pred             CHHHHHHHhccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEeeecCCC
Confidence            344566633335678888888753333   5668889999987778888654   78899999995 7999999632 22


Q ss_pred             EEEEEcC-CCHHHHHHHHHHH
Q 030165          161 KESIIGA-VPKSTLSSTLDKY  180 (182)
Q Consensus       161 v~~~~G~-~~~~~l~~~l~~~  180 (182)
                      ...+.|. .+.+.|..||+.-
T Consensus        79 ~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          79 PVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             EEECSSSSCCHHHHHHHHHHT
T ss_pred             ceecCCCCCCHHHHHHHHHHh
Confidence            3455574 7899999999863

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.0029  Score=42.17  Aligned_cols=62  Identities=15%  Similarity=0.261  Sum_probs=43.2

Q ss_pred             HHcCCCcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEECCeE
Q 030165           90 VISSENPVLVEFWA-----PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNI----ATKYGIRSIPTVLFFKNGEK  160 (182)
Q Consensus        90 ~~~~~~~vlV~F~a-----~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l----~~~~~I~~iPTl~~f~~G~~  160 (182)
                      +.+++ +||| |..     |.|++|++....|+++      .+.+..+|+++.+++    .+..+.+.+|.+++  +|+-
T Consensus        11 ~i~~~-~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~~   80 (109)
T d1wika_          11 LTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGDL   80 (109)
T ss_dssp             HHTTS-SEEE-EESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSSE
T ss_pred             HHhcC-CEEE-EeCCCCCCCCChHHHHHHHHHHhc------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCEE
Confidence            43433 4443 764     8899999999888643      367777888887654    45568889998865  8864


Q ss_pred             E
Q 030165          161 K  161 (182)
Q Consensus       161 v  161 (182)
                      +
T Consensus        81 I   81 (109)
T d1wika_          81 V   81 (109)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0018  Score=47.56  Aligned_cols=43  Identities=19%  Similarity=0.448  Sum_probs=35.6

Q ss_pred             CCCcEEEEEEcCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCC
Q 030165           93 SENPVLVEFWAPWCGPCRMIAPAIE---ELAKEYAGKVACFKLNTD  135 (182)
Q Consensus        93 ~~~~vlV~F~a~wC~~C~~~~p~l~---~~a~~~~~~v~~~~vd~d  135 (182)
                      .+++.|+.|+.-+|++|..+.|.++   ++.+.+++++.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4678899999999999999999875   666778888888877664

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.068  Score=37.22  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             cCCCcEEEEEE-cCCChhh-hhhhHHHHHHHHHhcCc--eEEEEEeC-----------------------CCChHHHHHc
Q 030165           92 SSENPVLVEFW-APWCGPC-RMIAPAIEELAKEYAGK--VACFKLNT-----------------------DDSPNIATKY  144 (182)
Q Consensus        92 ~~~~~vlV~F~-a~wC~~C-~~~~p~l~~~a~~~~~~--v~~~~vd~-----------------------d~~~~l~~~~  144 (182)
                      ..++.+|+.|| ..|++.| ....+.+.+....+..+  ..++.+..                       |.+.++++.|
T Consensus        29 ~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~  108 (161)
T d1hd2a_          29 FKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET  108 (161)
T ss_dssp             TTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHH
T ss_pred             hCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhhhhhcccccccccccCCcceeeeee
Confidence            35788999999 8999999 55777787766665432  22333332                       4555688888


Q ss_pred             CCCc------c-----c--EEEEEECCeEEEEEE
Q 030165          145 GIRS------I-----P--TVLFFKNGEKKESII  165 (182)
Q Consensus       145 ~I~~------i-----P--Tl~~f~~G~~v~~~~  165 (182)
                      |+..      .     .  ++++.+||.+.....
T Consensus       109 g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_         109 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             TCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred             eeeeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence            8631      1     1  477778998766554

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.042  Score=35.86  Aligned_cols=87  Identities=16%  Similarity=0.093  Sum_probs=64.0

Q ss_pred             hhHHHHHHcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEE-E
Q 030165           84 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKK-E  162 (182)
Q Consensus        84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v-~  162 (182)
                      +++.....+-.++|.+..+...|..|..+...+++++..- +++.+..-+.+          ....|++.+.++|+.- .
T Consensus         8 ~QLk~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lS-dkI~~~~~~~~----------~~r~Ps~~i~~~g~~~gI   76 (102)
T d1hyua3           8 TQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELS-DKVTFKEDNTL----------PVRKPSFLITNPGSQQGP   76 (102)
T ss_dssp             HHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEECTTS----------SSCSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhC-CCeEEEEcCCC----------CCCCCeEEEecCCCEeee
Confidence            3445545556788888888899999999999999998754 46776543322          2346999998877643 5


Q ss_pred             EEEcCCCHHHHHHHHHHHh
Q 030165          163 SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       163 ~~~G~~~~~~l~~~l~~~l  181 (182)
                      ++.|...-.+|..+|..++
T Consensus        77 ~F~GiP~GhEF~Slilail   95 (102)
T d1hyua3          77 RFAGSPLGHEFTSLVLALL   95 (102)
T ss_dssp             EEESCCCGGGHHHHHHHHH
T ss_pred             EEecCCCcccHHHHHHHHH
Confidence            8889888888888887765

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=95.35  E-value=0.17  Score=32.93  Aligned_cols=83  Identities=14%  Similarity=0.258  Sum_probs=58.5

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHhc-C-ceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHH
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEYA-G-KVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL  173 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~~-~-~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l  173 (182)
                      ..+..|-+. -+........+.++.+++. + ...+-.+|+.+++++++.+.|-++||++=..-. ...++.|..-.+++
T Consensus        13 l~L~LfV~g-~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~-P~q~l~Gs~i~~ql   90 (105)
T d1t4za_          13 LLLQLFVDT-RPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQL   90 (105)
T ss_dssp             EEEEEEECS-CHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-CCEEEESSCHHHHH
T ss_pred             eEEEEEEcC-CcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC-cceeecChhHHHHH
Confidence            445555555 3554444444555555543 3 478888999999999999999999999866433 34588898888898


Q ss_pred             HHHHHHH
Q 030165          174 SSTLDKY  180 (182)
Q Consensus       174 ~~~l~~~  180 (182)
                      ..|.-+.
T Consensus        91 ~~w~prw   97 (105)
T d1t4za_          91 ANQLPQW   97 (105)
T ss_dssp             HHHHHHH
T ss_pred             hhhhhHh
Confidence            8887654

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.34  E-value=0.29  Score=36.08  Aligned_cols=82  Identities=21%  Similarity=0.328  Sum_probs=57.1

Q ss_pred             CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCC--------C---Ch-------HHHHHcCCCcccEEEEE
Q 030165           94 ENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTD--------D---SP-------NIATKYGIRSIPTVLFF  155 (182)
Q Consensus        94 ~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d--------~---~~-------~l~~~~~I~~iPTl~~f  155 (182)
                      .+.||=+|++.||..|-.....|+++++.  +++..+..-+|        +   .+       ..+.+++.+.+||=.++
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~v   82 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAI   82 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEE
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEE
Confidence            45677788899999999999999999864  45666666654        1   11       24566789887775555


Q ss_pred             ECCeEEEEEEcCCCHHHHHHHHHHH
Q 030165          156 KNGEKKESIIGAVPKSTLSSTLDKY  180 (182)
Q Consensus       156 ~~G~~v~~~~G~~~~~~l~~~l~~~  180 (182)
                      .||+.  ...| .+.+.+.+.|.+.
T Consensus        83 vnG~~--~~~g-s~~~~~~~~i~~~  104 (225)
T d2axoa1          83 LNGRD--HVKG-ADVRGIYDRLDAF  104 (225)
T ss_dssp             ETTTE--EEET-TCHHHHHHHHHHH
T ss_pred             EeCcc--cccc-cCHHHHHHHHHHH
Confidence            59975  3334 4667777777654

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=92.91  E-value=0.3  Score=33.71  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             CCCcEEEEEE-cCCChhh-hhhhHHHHHHHHHhcC----ceEEEEEeC---------------------CCChHHHHHcC
Q 030165           93 SENPVLVEFW-APWCGPC-RMIAPAIEELAKEYAG----KVACFKLNT---------------------DDSPNIATKYG  145 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C-~~~~p~l~~~a~~~~~----~v~~~~vd~---------------------d~~~~l~~~~~  145 (182)
                      .++.||+.|| ..|.+.| .+..+.+.+..+.+..    .+..+.+|.                     |...++++.||
T Consensus        34 ~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g  113 (162)
T d1tp9a1          34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG  113 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchhhhhhhhhhcccccccccccchhhHHHhhhh
Confidence            4688888888 8999999 4677777766654432    233333332                     34446788888


Q ss_pred             CCc---------cc--EEEEEECCeEEEEEE
Q 030165          146 IRS---------IP--TVLFFKNGEKKESII  165 (182)
Q Consensus       146 I~~---------iP--Tl~~f~~G~~v~~~~  165 (182)
                      +..         ..  ..++++||++.....
T Consensus       114 ~~~~~~~~g~g~~~~R~tfiIddg~I~~~~v  144 (162)
T d1tp9a1         114 LELDLQEKGLGTRSRRFALLVDDLKVKAANI  144 (162)
T ss_dssp             CEEEETTTTSEEEECCEEEEEETTEEEEEEE
T ss_pred             hccccccccCCcEEEEEEEEEECCEEEEEEE
Confidence            641         11  134446887766555

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.37  Score=30.16  Aligned_cols=57  Identities=5%  Similarity=0.075  Sum_probs=37.3

Q ss_pred             EEEEEcCCCh------hhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHH---Hc---CCCcccEEEEEECCeEEE
Q 030165           98 LVEFWAPWCG------PCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT---KY---GIRSIPTVLFFKNGEKKE  162 (182)
Q Consensus        98 lV~F~a~wC~------~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~---~~---~I~~iPTl~~f~~G~~v~  162 (182)
                      ++.|+++||+      .|..+...|+..      ++.+-.+|++.+.+..+   ++   +...+|-+++  ||+-++
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~------~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv--~~~~iG   72 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GNHYCG   72 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TTEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC------CCceEEEEecCchhHHHHHHHhccCCCceeEEEEE--CCEEEe
Confidence            5567999996      677777666653      48888999988765432   22   3345676544  886443

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.073  Score=38.49  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=28.1

Q ss_pred             ChHHHHHcCCCcccEEEEEECCeEEEEEEcCC--C----HHHHHHHHHHHh
Q 030165          137 SPNIATKYGIRSIPTVLFFKNGEKKESIIGAV--P----KSTLSSTLDKYV  181 (182)
Q Consensus       137 ~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~--~----~~~l~~~l~~~l  181 (182)
                      ...+++++||+++||+++  ||+-+....+..  +    .+++.+.++.|+
T Consensus        39 ~~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~   87 (195)
T d1un2a_          39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLS   87 (195)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHH
Confidence            456889999999999877  998544333322  2    345555555554

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=89.89  E-value=2  Score=29.30  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             CCCcEEEEEE-cCCChhhhhhhHH-HHHHHHHh--cCceEEEEEeC----------------------CCChHHHHHcCC
Q 030165           93 SENPVLVEFW-APWCGPCRMIAPA-IEELAKEY--AGKVACFKLNT----------------------DDSPNIATKYGI  146 (182)
Q Consensus        93 ~~~~vlV~F~-a~wC~~C~~~~p~-l~~~a~~~--~~~v~~~~vd~----------------------d~~~~l~~~~~I  146 (182)
                      .++.||+.|| +.+.+.|-..... +++..+..  .+.-..+.+..                      |.+..+++.||+
T Consensus        30 ~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~  109 (163)
T d1nm3a2          30 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  109 (163)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHHHHhhhhccCceeeeccCChHHHHHhhh
Confidence            3678888777 8899999987654 33333222  22112222222                      344457777765


Q ss_pred             C-----------cccEEEEEECCeEEEEEEc
Q 030165          147 R-----------SIPTVLFFKNGEKKESIIG  166 (182)
Q Consensus       147 ~-----------~iPTl~~f~~G~~v~~~~G  166 (182)
                      .           +.-..++++||.+...+..
T Consensus       110 ~~~~~~~g~g~~s~R~~~IiddG~I~~~~v~  140 (163)
T d1nm3a2         110 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIE  140 (163)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEEC
T ss_pred             hccccccccccccceEEEEEeCCEEEEEEEe
Confidence            2           3344666689987766553

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=89.40  E-value=0.078  Score=33.70  Aligned_cols=58  Identities=17%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             cEEEEEEcCCChhhhhhhHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030165           96 PVLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPNIATKYGIRSIPTVL  153 (182)
Q Consensus        96 ~vlV~F~a~wC~~C~~~~p~l~~~a~~~-~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~  153 (182)
                      .++-.|-+..-+........+.++.+++ ++...+-.+|+.++++++++++|-++||++
T Consensus         2 y~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           2 YVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence            3566777877787777777777776654 566888899999999999999999999964

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.12  E-value=0.46  Score=29.33  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCCh---------HHHHH-----cCCCcccEEEEEECCe
Q 030165          104 PWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSP---------NIATK-----YGIRSIPTVLFFKNGE  159 (182)
Q Consensus       104 ~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~---------~l~~~-----~~I~~iPTl~~f~~G~  159 (182)
                      +.|++|++....|++.      ++.+..+++++..         ++.++     .+.+++|.+++ .||+
T Consensus        12 ~~C~~C~~AK~lL~~~------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~   74 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGS   74 (87)
T ss_dssp             SCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSC
T ss_pred             CCChhHHHHHHHHHHc------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCc
Confidence            3599999988776654      2566666655421         22333     35678998843 3675

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=1.7  Score=25.68  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             EEEcCCChhhhhhhHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEECCeEEEEEEcCCCHHHHHHHHHH
Q 030165          100 EFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK  179 (182)
Q Consensus       100 ~F~a~wC~~C~~~~p~l~~~a~~~~~~v~~~~vd~d~~~~l~~~~~I~~iPTl~~f~~G~~v~~~~G~~~~~~l~~~l~~  179 (182)
                      .|..++|++|++.+-.+....-    .+....++.+...++.+..+-..+|++.. .||+.+      ..-..+.++|++
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi----~~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~i------~eS~~I~~yLd~   71 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI----PVELHVLLNDDAETPTRMVGQKQVPILQK-DDSRYM------PESMDIVHYVDK   71 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC----CCEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEEE------ECHHHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC----CcccccccccchHHHHHhCCCCceEEEEE-cCCCEE------ecHHHHHHHHHH
Confidence            4678899999988876665432    24445556666677777788899998754 366542      235667888876


Q ss_pred             H
Q 030165          180 Y  180 (182)
Q Consensus       180 ~  180 (182)
                      .
T Consensus        72 ~   72 (75)
T d1g7oa2          72 L   72 (75)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=80.74  E-value=5.4  Score=25.84  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             EEcChhhHHHHHH-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCCCChHHH----HHcCCC-ccc
Q 030165           79 QVVTDSSWENLVI-SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAG--KVACFKLNTDDSPNIA----TKYGIR-SIP  150 (182)
Q Consensus        79 ~~l~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~l~~~a~~~~~--~v~~~~vd~d~~~~l~----~~~~I~-~iP  150 (182)
                      +.+..+++.+.=. .-+...+|-|--.--+.-..|...++++|+++..  ++.|+.||-|+-+-+.    +-|+|. .=|
T Consensus         3 rKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~P   82 (119)
T d1a8ya3           3 RKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAP   82 (119)
T ss_dssp             EECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTSC
T ss_pred             cccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCCC
Confidence            3445555554322 3456677778888889999999999999999864  4999999999887653    447776 349


Q ss_pred             EEEEEE--CCeEEE----EEEcCCCHHHHHHHHHHHh
Q 030165          151 TVLFFK--NGEKKE----SIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       151 Tl~~f~--~G~~v~----~~~G~~~~~~l~~~l~~~l  181 (182)
                      .+=++.  +...+=    .-....+.++|.+||+..|
T Consensus        83 qIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          83 QIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             EEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             ceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            888874  332221    1122347899999999865

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.55  E-value=5.2  Score=25.57  Aligned_cols=80  Identities=14%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             EEEEEcC-CChhhhhhh------HHHH-HHHHHhcC-ceEEEEEeCCCCh--------HHHHHcC--CCcccEEEEEECC
Q 030165           98 LVEFWAP-WCGPCRMIA------PAIE-ELAKEYAG-KVACFKLNTDDSP--------NIATKYG--IRSIPTVLFFKNG  158 (182)
Q Consensus        98 lV~F~a~-wC~~C~~~~------p~l~-~~a~~~~~-~v~~~~vd~d~~~--------~l~~~~~--I~~iPTl~~f~~G  158 (182)
                      ++.|.|. -|..|..+=      ..|+ .+.++|++ .+.|..+|+.+.+        +++++..  ---+|-+++  ||
T Consensus        10 i~VYGA~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~i--~~   87 (111)
T d1xg8a_          10 VVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM--ND   87 (111)
T ss_dssp             EEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE--TT
T ss_pred             EEEEcccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEEE--CC
Confidence            4445554 599998762      2233 35577876 5899999995533        3455532  335787776  99


Q ss_pred             eEEEEEEcCCCHHHHHHHHHHHh
Q 030165          159 EKKESIIGAVPKSTLSSTLDKYV  181 (182)
Q Consensus       159 ~~v~~~~G~~~~~~l~~~l~~~l  181 (182)
                      +.++.  |....+++.+++++++
T Consensus        88 eiVaE--Gnp~LK~I~~~ie~~~  108 (111)
T d1xg8a_          88 EYVAD--GYIQTKQITRFIDQKL  108 (111)
T ss_dssp             EEEEE--SSCCHHHHHHHHHHHH
T ss_pred             EEeec--CCccHHHHHHHHHHHh
Confidence            88765  8888999999999886