Citrus Sinensis ID: 030174

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
cccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEEcHHHHHHHHHHcccEEEcccccccccccccccccHHHHHHcccccccccccEEEEEEEEccccccHHHHHHHccccccccccccHHHHHHHHHHHccEEEEcccccccc
ccHHccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcHEcHHHccccccccEEEEEEEccHHHHHHHHHHcccHHHEcccccccccccccccEcEEEcccccccccccEEEEEEEEEEcccccEHHHHHHHcccccccccccHHHHHHHHHHHccEEEEcccccccc
masdkklsnpmreIKVQKLVLNISVGESGDRLTRAAKVLEQLsgqtpvfsKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRnfsdtgcfgfgIQEHIdlgikydpstgiygmDFFVVLerpgyrvgrrrrcksrvgiqhRVTKEDAMKWFQVKYEGVILNKSQNIGA
masdkklsnpmreikVQKLVLNISVGESGDRLTRAAKVLeqlsgqtpvfskarytvrsfgirrnekiaCYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLErpgyrvgrrrrcksrvgiqhrvtkedamkwfqVKYEgvilnksqniga
MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLErpgyrvgrrrrcksrvgIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
***************VQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN*******
*****KL**PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRR************VTKEDAMKWFQVKYEGVILNK******
********NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
*******SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query182 2.2.26 [Sep-21-2011]
P46287181 60S ribosomal protein L11 N/A no 0.989 0.994 0.977 1e-100
P42795182 60S ribosomal protein L11 yes no 0.989 0.989 0.955 6e-99
P42794182 60S ribosomal protein L11 yes no 0.989 0.989 0.955 7e-99
Q0DK10182 60S ribosomal protein L11 yes no 0.978 0.978 0.943 2e-96
A2YDY2182 60S ribosomal protein L11 N/A no 0.978 0.978 0.943 2e-96
Q10157174 60S ribosomal protein L11 yes no 0.945 0.988 0.726 9e-72
P46222184 60S ribosomal protein L11 yes no 0.917 0.907 0.766 1e-71
Q7RVN0174 60S ribosomal protein L11 N/A no 0.950 0.994 0.710 1e-71
Q758S7174 60S ribosomal protein L11 yes no 0.939 0.982 0.719 1e-70
P0C0W9174 60S ribosomal protein L11 yes no 0.939 0.982 0.730 3e-70
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1 Back     alignment and function desciption
 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/180 (97%), Positives = 179/180 (99%)

Query: 1   MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
           MAS+KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
Binds to 5S ribosomal RNA.
Medicago sativa (taxid: 3879)
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2 Back     alignment and function description
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2 Back     alignment and function description
>sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1 Back     alignment and function description
>sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2 Back     alignment and function description
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl11a PE=1 SV=1 Back     alignment and function description
>sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2 Back     alignment and function description
>sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-11 PE=3 SV=2 Back     alignment and function description
>sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL11 PE=3 SV=1 Back     alignment and function description
>sp|P0C0W9|RL11A_YEAST 60S ribosomal protein L11-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL11A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
255562456182 60S ribosomal protein L11, putative [Ric 1.0 1.0 0.978 1e-100
255538652182 60S ribosomal protein L11, putative [Ric 1.0 1.0 0.972 1e-100
351724995181 uncharacterized protein LOC100499863 [Gl 0.989 0.994 0.988 2e-99
356543128181 PREDICTED: 60S ribosomal protein L11-lik 0.989 0.994 0.988 2e-99
351725667181 uncharacterized protein LOC100305912 [Gl 0.989 0.994 0.983 6e-99
1173055181 RecName: Full=60S ribosomal protein L11; 0.989 0.994 0.977 1e-98
449433740181 PREDICTED: 60S ribosomal protein L11-1-l 0.989 0.994 0.972 2e-98
24817256181 ribosomal protein RL5 [Cicer arietinum] 0.989 0.994 0.972 3e-98
357474727181 60S ribosomal protein L11-1 [Medicago tr 0.989 0.994 0.966 4e-98
449432329182 PREDICTED: 60S ribosomal protein L11-2-l 0.989 0.989 0.972 4e-98
>gi|255562456|ref|XP_002522234.1| 60S ribosomal protein L11, putative [Ricinus communis] gi|223538487|gb|EEF40092.1| 60S ribosomal protein L11, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/182 (97%), Positives = 181/182 (99%)

Query: 1   MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
           MAS+KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q I
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTI 180

Query: 181 GA 182
           GA
Sbjct: 181 GA 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538652|ref|XP_002510391.1| 60S ribosomal protein L11, putative [Ricinus communis] gi|223551092|gb|EEF52578.1| 60S ribosomal protein L11, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351724995|ref|NP_001237077.1| uncharacterized protein LOC100499863 [Glycine max] gi|356517806|ref|XP_003527577.1| PREDICTED: 60S ribosomal protein L11-like [Glycine max] gi|356556759|ref|XP_003546690.1| PREDICTED: 60S ribosomal protein L11-like isoform 1 [Glycine max] gi|255627231|gb|ACU13960.1| unknown [Glycine max] gi|255648308|gb|ACU24606.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356543128|ref|XP_003540015.1| PREDICTED: 60S ribosomal protein L11-like [Glycine max] Back     alignment and taxonomy information
>gi|351725667|ref|NP_001238636.1| uncharacterized protein LOC100305912 [Glycine max] gi|255626957|gb|ACU13823.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|1173055|sp|P46287.1|RL11_MEDSA RecName: Full=60S ribosomal protein L11; AltName: Full=L5 gi|463252|emb|CAA55090.1| RL5 ribosomal protein [Medicago sativa] Back     alignment and taxonomy information
>gi|449433740|ref|XP_004134655.1| PREDICTED: 60S ribosomal protein L11-1-like [Cucumis sativus] gi|449508584|ref|XP_004163354.1| PREDICTED: 60S ribosomal protein L11-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|24817256|emb|CAD56220.1| ribosomal protein RL5 [Cicer arietinum] Back     alignment and taxonomy information
>gi|357474727|ref|XP_003607648.1| 60S ribosomal protein L11-1 [Medicago truncatula] gi|217075616|gb|ACJ86168.1| unknown [Medicago truncatula] gi|355508703|gb|AES89845.1| 60S ribosomal protein L11-1 [Medicago truncatula] gi|388520829|gb|AFK48476.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449432329|ref|XP_004133952.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 2 [Cucumis sativus] gi|449515416|ref|XP_004164745.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
TAIR|locus:2052432182 RPL16A "ribosomal protein larg 0.989 0.989 0.872 5.4e-79
TAIR|locus:2099024182 AT3G58700 [Arabidopsis thalian 0.989 0.989 0.872 5.4e-79
TAIR|locus:2124112182 RPL16B "ribosomal protein L16B 0.989 0.989 0.872 5.4e-79
TAIR|locus:505006673182 AT5G45775 [Arabidopsis thalian 0.989 0.989 0.872 5.4e-79
GENEDB_PFALCIPARUM|PF07_0079173 PF07_0079 "60S ribosomal prote 0.939 0.988 0.678 1.7e-59
UNIPROTKB|Q8IBQ6173 PF07_0079 "60S ribosomal prote 0.939 0.988 0.678 1.7e-59
UNIPROTKB|Q3T087178 RPL11 "60S ribosomal protein L 0.956 0.977 0.68 2.7e-59
UNIPROTKB|E2R9G7178 RPL11 "Uncharacterized protein 0.956 0.977 0.68 2.7e-59
UNIPROTKB|P62913178 RPL11 "60S ribosomal protein L 0.956 0.977 0.68 2.7e-59
UNIPROTKB|I3LD74178 RPL11 "60S ribosomal protein L 0.956 0.977 0.68 2.7e-59
TAIR|locus:2052432 RPL16A "ribosomal protein large subunit 16A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 157/180 (87%), Positives = 163/180 (90%)

Query:     1 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60
             MAS+KKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct:     1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query:    61 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
             IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct:    61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query:   121 STGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180
             STGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;IDA;TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2099024 AT3G58700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124112 RPL16B "ribosomal protein L16B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006673 AT5G45775 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF07_0079 PF07_0079 "60S ribosomal protein L11a, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IBQ6 PF07_0079 "60S ribosomal protein L11a, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T087 RPL11 "60S ribosomal protein L11" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9G7 RPL11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62913 RPL11 "60S ribosomal protein L11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LD74 RPL11 "60S ribosomal protein L11" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8PV37RL5_METMANo assigned EC number0.40850.89560.9644yesno
Q9UX93RL5_SULSONo assigned EC number0.46540.86810.8681yesno
Q758S7RL11_ASHGONo assigned EC number0.71920.93950.9827yesno
A9A9Q1RL5_METM6No assigned EC number0.44240.88460.8895yesno
Q2FT38RL5_METHJNo assigned EC number0.41350.88460.9583yesno
Q6LXE0RL5_METMPNo assigned EC number0.44570.89010.8950yesno
P54040RL5_METJANo assigned EC number0.47530.86810.8315yesno
O28367RL5_ARCFUNo assigned EC number0.50940.86260.8820yesno
O59431RL5_PYRHONo assigned EC number0.47230.89010.8617yesno
P62913RL11_HUMANNo assigned EC number0.70850.95600.9775yesno
Q9CXW4RL11_MOUSENo assigned EC number0.70850.95600.9775yesno
Q46GA8RL5_METBFNo assigned EC number0.41460.89560.9644yesno
Q3T087RL11_BOVINNo assigned EC number0.70850.95600.9775yesno
Q3E757RL11B_YEASTNo assigned EC number0.73090.93950.9827yesno
P48157RL11_LEIMANo assigned EC number0.69710.96150.9308yesno
P62914RL11_RATNo assigned EC number0.70850.95600.9775yesno
Q12ZT8RL5_METBUNo assigned EC number0.45730.89560.9644yesno
A6VGZ8RL5_METM7No assigned EC number0.44840.88460.8895yesno
Q94300RL11_CAEELNo assigned EC number0.74260.93950.8724nono
P46287RL11_MEDSANo assigned EC number0.97770.98900.9944N/Ano
Q29205RL11_PIGNo assigned EC number0.70280.95600.9775yesno
Q90YV7RL11_ICTPUNo assigned EC number0.71760.93400.9550N/Ano
Q9V1U9RL5_PYRABNo assigned EC number0.46010.89010.8617yesno
Q6FTK4RL11_CANGANo assigned EC number0.70760.93950.9827yesno
P42922RL11_LEICHNo assigned EC number0.70280.96150.9308N/Ano
P46222RL11_DROMENo assigned EC number0.76640.91750.9076yesno
Q7RVN0RL11_NEUCRNo assigned EC number0.71090.95050.9942N/Ano
P16168RL11_DICDINo assigned EC number0.69230.92850.8366yesno
P0C0W9RL11A_YEASTNo assigned EC number0.73090.93950.9827yesno
A4FWA8RL5_METM5No assigned EC number0.43030.88460.8895yesno
P50881RL11_CHLRENo assigned EC number0.72450.91750.9823N/Ano
Q94793RL11_TOXCANo assigned EC number0.78070.62630.912N/Ano
Q10157RL11_SCHPONo assigned EC number0.72670.94500.9885yesno
A5UL75RL5_METS3No assigned EC number0.42160.88460.9470yesno
P14029RL5_METVANo assigned EC number0.45120.87910.8839yesno
Q5RC11RL11_PONABNo assigned EC number0.70850.95600.9775yesno
Q6QMZ8RL11_CHILANo assigned EC number0.70850.95600.9775N/Ano
Q8SSG9RL11_ENCCUNo assigned EC number0.64630.90100.9939yesno
P42794RL112_ARATHNo assigned EC number0.95550.98900.9890yesno
P42795RL111_ARATHNo assigned EC number0.95550.98900.9890yesno
Q8U012RL5_PYRFUNo assigned EC number0.46620.89010.8709yesno
Q74N79RL5_NANEQNo assigned EC number0.46290.87360.9408yesno
A2YDY2RL11_ORYSINo assigned EC number0.94380.97800.9780N/Ano
Q9YF87RL5_AERPENo assigned EC number0.45960.87360.8281yesno
P24119RL11_TETTHNo assigned EC number0.67250.93400.9883N/Ano
Q5JJG1RL5_PYRKONo assigned EC number0.48230.90650.9016yesno
Q0DK10RL11_ORYSJNo assigned EC number0.94380.97800.9780yesno
A6UQ57RL5_METVSNo assigned EC number0.45120.87910.8839yesno
Q962U2RL11_SPOFRNo assigned EC number0.69640.91750.8564N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI001257
SubName- Full=Putative uncharacterized protein; (180 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.3868.1
SubName- Full=Putative uncharacterized protein; (262 aa)
• ••  • 0.760
gw1.XIII.662.1
SubName- Full=Putative uncharacterized protein; (262 aa)
• ••  • 0.758
estExt_fgenesh4_pm.C_LG_VI0361
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••  • 0.755
estExt_fgenesh4_pm.C_1220043
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••  • 0.755
eugene3.00150590
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••  • 0.753
gw1.XVI.1998.1
SubName- Full=Putative uncharacterized protein; (204 aa)
   •••• 0.729
eugene3.00061162
SubName- Full=Putative uncharacterized protein; (208 aa)
   •••• 0.723
gw1.57.264.1
SubName- Full=Putative uncharacterized protein; (258 aa)
• ••• • 0.701
estExt_Genewise1_v1.C_LG_VII3915
SubName- Full=Putative uncharacterized protein; (260 aa)
• ••• • 0.698
gw1.16155.2.1
Predicted protein (206 aa)
•  •  • 0.696

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
PTZ00156172 PTZ00156, PTZ00156, 60S ribosomal protein L11; Pro 1e-118
PRK04219177 PRK04219, rpl5p, 50S ribosomal protein L5P; Review 3e-79
COG0094180 COG0094, RplE, Ribosomal protein L5 [Translation, 7e-56
pfam0067395 pfam00673, Ribosomal_L5_C, ribosomal L5P family C- 9e-26
pfam0028156 pfam00281, Ribosomal_L5, Ribosomal protein L5 9e-18
PRK00010179 PRK00010, rplE, 50S ribosomal protein L5; Validate 6e-13
CHL00078181 CHL00078, rpl5, ribosomal protein L5 2e-07
>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional Back     alignment and domain information 
 Score =  330 bits (849), Expect = e-118
 Identities = 135/171 (78%), Positives = 155/171 (90%)

Query: 5   KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRN 64
            K  NPMR+I+++KLVLNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRN
Sbjct: 2   SKKENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRN 61

Query: 65  EKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI 124
           EKIAC+VTVRGDKA ++LE GLKVKE+EL +RNFSDTG FGFGIQEHIDLGIKYDPSTGI
Sbjct: 62  EKIACHVTVRGDKAEEILERGLKVKEFELKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGI 121

Query: 125 YGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
           YGMDF+VVL RPG+RV RR+R +S+VG  HRVTKE+AMKWF+  ++G+ILN
Sbjct: 122 YGMDFYVVLGRPGFRVARRKRKQSKVGKSHRVTKEEAMKWFKTTFDGIILN 172

Length = 172
>gnl|CDD|235259 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>gnl|CDD|223172 COG0094, RplE, Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201383 pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus Back     alignment and domain information
>gnl|CDD|109342 pfam00281, Ribosomal_L5, Ribosomal protein L5 Back     alignment and domain information
>gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated Back     alignment and domain information
>gnl|CDD|214356 CHL00078, rpl5, ribosomal protein L5 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 182
PTZ00156172 60S ribosomal protein L11; Provisional 100.0
PRK04219177 rpl5p 50S ribosomal protein L5P; Reviewed 100.0
COG0094180 RplE Ribosomal protein L5 [Translation, ribosomal 100.0
KOG0397176 consensus 60S ribosomal protein L11 [Translation, 100.0
PRK00010179 rplE 50S ribosomal protein L5; Validated 100.0
CHL00078181 rpl5 ribosomal protein L5 100.0
KOG0398278 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PF0067395 Ribosomal_L5_C: ribosomal L5P family C-terminus; I 99.96
PF0028156 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR0 99.84
>PTZ00156 60S ribosomal protein L11; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-72  Score=454.70  Aligned_cols=170  Identities=79%  Similarity=1.270  Sum_probs=167.2

Q ss_pred             CCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHHh
Q 030174            6 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESG   85 (182)
Q Consensus         6 ~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~kl   85 (182)
                      -.+|+|++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||+||++||||+|+||||+|||||++||+||+||
T Consensus         3 ~~~n~m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkG~pIG~kVTLRg~~m~eFLdrl   82 (172)
T PTZ00156          3 KKENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRNEKIACHVTVRGDKAEEILERG   82 (172)
T ss_pred             ccCCCccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEEhhcccccccccCCCEEEEEEEEchHHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHh
Q 030174           86 LKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWF  165 (182)
Q Consensus        86 irirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~  165 (182)
                      +++|||+|+.++||++|||+|||+||++||++|||..+++||||+|++++||||+++|++++++||.+|||++|||++||
T Consensus        83 irirDf~l~~~sFD~~GN~sfGI~e~i~fei~yD~~~~i~GmdI~ivl~rpG~rv~~R~~~~~~i~~~hrv~~eea~~~~  162 (172)
T PTZ00156         83 LKVKEFELKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRVARRKRKQSKVGKSHRVTKEEAMKWF  162 (172)
T ss_pred             HhhhcccccCcccCCCcccccCCchheeeceecCcccCcccCceEEEEeCCcceeeecccccccCCCCceeCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccEEEec
Q 030174          166 QVKYEGVILN  175 (182)
Q Consensus       166 ~~~~~~~~~~  175 (182)
                      +++|||+|++
T Consensus       163 ~~~~~v~v~~  172 (172)
T PTZ00156        163 KTTFDGIILN  172 (172)
T ss_pred             HhhcCEEEcC
Confidence            9999999975

>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00010 rplE 50S ribosomal protein L5; Validated Back     alignment and domain information
>CHL00078 rpl5 ribosomal protein L5 Back     alignment and domain information
>KOG0398 consensus Mitochondrial/chloroplast ribosomal protein L5/L7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
3izr_E180 Localization Of The Large Subunit Ribosomal Protein 2e-82
2zkr_d178 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-65
1s1i_J173 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 6e-62
3izs_E174 Localization Of The Large Subunit Ribosomal Protein 6e-62
3zf7_L194 High-resolution Cryo-electron Microscopy Structure 9e-62
2noq_H165 Structure Of Ribosome-Bound Cricket Paralysis Virus 3e-60
3jyw_J151 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-56
4a17_D172 T.Thermophila 60s Ribosomal Subunit In Complex With 6e-56
3j21_E186 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-31
1s72_D177 Refined Crystal Structure Of The Haloarcula Marismo 3e-23
1ffk_D176 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-23
3ow2_D165 Crystal Structure Of Enhanced Macrolide Bound To 50 4e-23
1iq4_A179 5s-Rrna Binding Ribosomal Protein L5 From Bacillus 6e-09
1p85_D178 Real Space Refined Coordinates Of The 50s Subunit F 8e-09
1vs6_F179 Crystal Structure Of The Bacterial Ribosome From Es 8e-09
2gya_D177 Structure Of The 50s Subunit Of A Pre-Translocation 9e-09
3ofr_F177 Crystal Structure Of The E. Coli Ribosome Bound To 9e-09
3mrz_F181 Recognition Of The Amber Stop Codon By Release Fact 1e-08
3fin_G181 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-08
2j01_G182 Structure Of The Thermus Thermophilus 70s Ribosome 1e-08
1vsa_E182 Crystal Structure Of A 70s Ribosome-Trna Complex Re 1e-08
1mji_A182 Detailed Analysis Of Rna-Protein Interactions Withi 7e-08
1pnu_D178 Crystal Structure Of A Streptomycin Dependent Ribos 2e-07
1nkw_D180 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-07
3bbo_H220 Homology Model For The Spinach Chloroplast 50s Subu 7e-04
>pdb|3IZR|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 180 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 155/177 (87%)
Query: 2   ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61
           +++KK  NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   STEKKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61
Query: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVT+RG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLG+KYDPS
Sbjct: 62  RRNEKIACYVTIRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPS 121
Query: 122 TGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 178
           TGIYGMDFFVVLE                 I  RVTKEDAMKWFQVKYEGVILNKS 
Sbjct: 122 TGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKEDAMKWFQVKYEGVILNKSH 178
>pdb|2ZKR|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 178 Back     alignment and structure
>pdb|1S1I|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 173 Back     alignment and structure
>pdb|3IZS|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 174 Back     alignment and structure
>pdb|3ZF7|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 194 Back     alignment and structure
>pdb|2NOQ|H Chain H, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 165 Back     alignment and structure
>pdb|3JYW|J Chain J, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 151 Back     alignment and structure
>pdb|4A17|D Chain D, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 172 Back     alignment and structure
>pdb|3J21|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 186 Back     alignment and structure
>pdb|1S72|D Chain D, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 176 Back     alignment and structure
>pdb|3OW2|D Chain D, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 165 Back     alignment and structure
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus Stearothermophilus Length = 179 Back     alignment and structure
>pdb|1P85|D Chain D, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 Back     alignment and structure
>pdb|1VS6|F Chain F, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 Back     alignment and structure
>pdb|2GYA|D Chain D, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 177 Back     alignment and structure
>pdb|3OFR|F Chain F, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. Length = 177 Back     alignment and structure
>pdb|3MRZ|F Chain F, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 181 Back     alignment and structure
>pdb|3FIN|G Chain G, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 181 Back     alignment and structure
>pdb|2J01|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 182 Back     alignment and structure
>pdb|1VSA|E Chain E, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 182 Back     alignment and structure
>pdb|1MJI|A Chain A, Detailed Analysis Of Rna-Protein Interactions Within The Bacterial Ribosomal Protein L55S RRNA COMPLEX Length = 182 Back     alignment and structure
>pdb|1PNU|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 178 Back     alignment and structure
>pdb|1NKW|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 180 Back     alignment and structure
>pdb|3BBO|H Chain H, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 1e-106
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 1e-104
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 1e-103
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 3e-90
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 7e-14
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 1e-13
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 2e-13
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 4e-13
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 178 Back     alignment and structure
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Length = 172 Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Length = 177 Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F 3orb_F* ... Length = 177 Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Length = 179 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Length = 182 Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
3iz5_E180 60S ribosomal protein L11 (L5P); eukaryotic riboso 100.0
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 100.0
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 100.0
3j21_E186 50S ribosomal protein L5P; archaea, archaeal, KINK 100.0
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 100.0
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 100.0
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 100.0
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 100.0
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 100.0
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Back     alignment and structure
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ... Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 182
d1vqod1165 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon 2e-53
d1iq4a_179 d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stear 2e-26
d2zjrd1177 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococc 2e-26
d1mjia_180 d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermo 1e-25
d2gycd1177 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherich 3e-20
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  165 bits (419), Expect = 2e-53
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 9   NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
           + MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I 
Sbjct: 2   HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 61

Query: 69  CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID-LGIKYDPSTGIYGM 127
             VT+R + A + L++ L + E  L    F DTG F FG++EH +    +YDPS GIYG+
Sbjct: 62  AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 119

Query: 128 DFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYE 170
           D  V L RPGYRV +R +    +  +HR+   DA+ + +  Y+
Sbjct: 120 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 162
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Length = 179 Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Length = 177 Back     information, alignment and structure
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Length = 177 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
d1vqod1165 Ribosomal protein L5 {Archaeon Haloarcula marismor 100.0
d1mjia_180 Ribosomal protein L5 {Thermus thermophilus [TaxId: 100.0
d1iq4a_179 Ribosomal protein L5 {Bacillus stearothermophilus 100.0
d2zjrd1177 Ribosomal protein L5 {Deinococcus radiodurans [Tax 100.0
d2gycd1177 Ribosomal protein L5 {Escherichia coli [TaxId: 562 100.0
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.9e-64  Score=406.51  Aligned_cols=163  Identities=38%  Similarity=0.723  Sum_probs=135.0

Q ss_pred             CCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHHhhcc
Q 030174            9 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKV   88 (182)
Q Consensus         9 n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~kliri   88 (182)
                      |||++|+|+|||||+|+|++++.|..|..+|+.||||+|++|+||+||++||||+|||+||+|||||++||+||++|+.+
T Consensus         2 n~M~vPki~KIvvn~Gvg~a~~~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg~piG~kVTLRg~~m~~FL~rll~~   81 (165)
T d1vqod1           2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPL   81 (165)
T ss_dssp             CTTTSCEEEEEEEEEECCC-----CTTHHHHHHHHSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHHTTGGG
T ss_pred             CCCCCceEEEEEEECCCChhHHHHHHHHHHHHHHhhCCccccccccccccccccCCCeEEEEEEEechhHHHHHHHHhcc
Confidence            89999999999999999999888999999999999999999999999999999999999999999999999999999976


Q ss_pred             cccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHhHh
Q 030174           89 KEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQV  167 (182)
Q Consensus        89 rdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~~~  167 (182)
                      ..  ++.++||++|||+|||+||++| |++||+..+++||||||+|+|+|+|+|+|+.+...+|.+|+|++|||++||++
T Consensus        82 ~~--~~~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~~~~~ak~~~~~~~ip~~~~i~kee~~~~~~~  159 (165)
T d1vqod1          82 AE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIES  159 (165)
T ss_dssp             SC--CCSTTBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCTTTSCCHHHHHHHHHT
T ss_pred             cc--CCccccCCceeEEeCchhheeccccccccccCcccceEEEEecCCChHHHHHHHHhcCCCccccCCHHHHHHHHHh
Confidence            54  6778999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             hccEEE
Q 030174          168 KYEGVI  173 (182)
Q Consensus       168 ~~~~~~  173 (182)
                      +|||+|
T Consensus       160 ~~~~~~  165 (165)
T d1vqod1         160 TYDVEV  165 (165)
T ss_dssp             SSSCCC
T ss_pred             ccCCcC
Confidence            999985
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure