Citrus Sinensis ID: 030182

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPNL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccEEEEcEEEEcHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccHHHHHHccccHHHHHEEccEEEEcHHHHHHHHHHccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdlyrsnnftgeklreknlswvdIFEEIPVKVSNSALISAFMTelepdtpvtqrdydrlqlssspflERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpifkpipepprleSFLIANRIANYCNQINGKALGKGVTQILQsesirpnl
Flexible Loop (DISEMBL)
mdlyrsnnftgeklreknlswvDIFEEIPVKVSNSALISAFMTelepdtpvtqrdyDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpiFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQilqsesirpnl
Low Complexity Region (SEG)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPNL
Disordered region (IsUnstruct)
***************EKNLSWVDIFEEIPVKVSNSALISAFMTEL*******************PFLERNMEFLIECMDDLSVEQQKFQFYYRSL***********************************************LESFLIANRIANYCNQINGKALGKGVTQI**********
Disordered Region (DISOPRED)
*DLY**NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEP*************LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYR**************************************PIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIR***
Disordered Region (DISEMBL)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL*********************************PSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPNL
Disordered Region (DISPRO)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRP*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPNL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9C5Z2	337	Eukaryotic translation in	yes	no	0.988	0.531	0.733	6e-73
A7SA47	332	Eukaryotic translation in	N/A	no	0.906	0.493	0.378	2e-30
B5RI54	344	Eukaryotic translation in	N/A	no	0.906	0.476	0.384	4e-25
A1CQB4	365	Eukaryotic translation in	N/A	no	0.883	0.438	0.355	2e-24
A1D379	347	Eukaryotic translation in	N/A	no	0.883	0.461	0.360	3e-24
Q5PPY6	334	Eukaryotic translation in	N/A	no	0.906	0.491	0.372	4e-24
Q0D1J4	365	Eukaryotic translation in	N/A	no	0.883	0.438	0.344	5e-24
A2QQA2	365	Eukaryotic translation in	yes	no	0.883	0.438	0.349	6e-24
Q6P381	335	Eukaryotic translation in	yes	no	0.906	0.489	0.378	6e-24
Q4WTA6	365	Eukaryotic translation in	yes	no	0.883	0.438	0.355	6e-24

>sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2

 Score =  273 bits (697), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 158/180 (87%), Gaps = 1/180 (0%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct: 159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
            S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct: 219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
           EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QING A G+  +++  ++++  N
Sbjct: 279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVA-GQNFSRLYLTKALHDN 337

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|A7SA47|EIF3H_NEMVE Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 112/169 (66%), Gaps = 5/169 (2%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M LY+   F+ +KL +  +S+  +F+EIP+ + NS+L++  + EL+ +TP    D   L 
Sbjct: 154 MKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMNVLLCELDENTPTPSAD-QFLT 212

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+  +LE+N+  L+E +D+L  +  K+  Y RS+ RQQ Q++++LQ+R+ EN++R   G
Sbjct: 213 LSTGSYLEKNVRVLMESVDELCQDSNKYHNYQRSVIRQQQQKENYLQRRQQENQSRIQRG 272

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYC---NQINGKALGK 166
           E+PLP+ED S  +FKP+P P RL++ L++ ++  YC   +Q + ++ GK
Sbjct: 273 EDPLPDEDLSK-MFKPLPVPSRLDNLLLSEQVNTYCQHVHQFSTQSFGK 320

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|B5RI54|EIF3H_SALSA Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 5/169 (2%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++ L 
Sbjct: 166 MEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLN 224

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  G
Sbjct: 225 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRG 284

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQI---NGKALGK 166
           E PLPEED S  +FKP   PPR+++ LIA +I NYC  +     + LGK
Sbjct: 285 ETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVKEFTSQNLGK 332

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Salmo salar (taxid: 8030)

>sp|A1CQB4|EIF3H_ASPCL Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_025520 PE=3 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 23/183 (12%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP--------- 50
           M  ++ N FT E+L++ NL + DIF E+PV++ NS LI++F+ +L+ P+ P         
Sbjct: 161 MTAFKENKFTSEELQKSNLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPTPTELPPSL 220

Query: 51  ------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                       +   +YD L LS  PFLE+N + L++ M+    E   FQ+Y RSL R+
Sbjct: 221 AALESGPFVNSTILAPNYDNLTLSIDPFLEKNCDLLLDSMETHHTETNNFQYYQRSLARE 280

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           Q +  +W QKR+ EN A +A  ++PL  ED    +FK   EP RL+S L + ++  Y  Q
Sbjct: 281 QQRISAWQQKRKQEN-ATRATLKQPLLPEDEWQRLFKLPQEPSRLDSMLNSRQVDQYARQ 339

Query: 159 ING 161
           ++ 
Sbjct: 340 VDS 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|A1D379|EIF3H_NEOFI Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 23/183 (12%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP--------- 50
           M  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P         
Sbjct: 143 MTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTDLPPSL 202

Query: 51  ------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                       +   +YD L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+
Sbjct: 203 AALESGPFVKSSILAPNYDNLTLSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLARE 262

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           Q +  +W QKR+ EN A +AA ++PL  ED    +FK   EP RLES L + ++  Y  Q
Sbjct: 263 QQRISAWQQKRKQEN-ATRAALKQPLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQ 321

Query: 159 ING 161
           I+ 
Sbjct: 322 IDS 324

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q5PPY6|EIF3H_XENLA Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 109/169 (64%), Gaps = 5/169 (2%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++ L 
Sbjct: 156 MEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLN 214

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + G
Sbjct: 215 LSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRG 274

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING---KALGK 166
           E PLPEED  N +FKP   P R++  LIA +I  Y   I G   + LGK
Sbjct: 275 ETPLPEED-VNKMFKPPVTPSRMDPLLIAGQINTYIQHIKGFTSQNLGK 322

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q0D1J4|EIF3H_ASPTN Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00190 PE=3 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 23/183 (12%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-------PDTP--- 50
           M  ++ N FT E+L++  L + DIF E+PV++ NS LI+ F+ +L+        D P   
Sbjct: 161 MAAFKENKFTAEELQKSGLRYQDIFVELPVEIHNSHLITTFLHQLQCPRQSAPTDLPPSL 220

Query: 51  ------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                       +   +YD L LS  PFLE+N + L++ ++  + E   FQ+Y RS TR+
Sbjct: 221 AALESGPFVKDTILAPNYDNLSLSIDPFLEKNCDLLLDSIETHNTETNNFQYYQRSFTRE 280

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           Q +   W+ KR+ EN +R    + PLP ED    +FK   EP RLES L + ++  Y  Q
Sbjct: 281 QTKINQWIAKRKAENASRATLKQPPLP-EDEWQRLFKLPQEPSRLESMLNSRQVEQYARQ 339

Query: 159 ING 161
           ++ 
Sbjct: 340 VDS 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|A2QQA2|EIF3H_ASPNC Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g01790 PE=3 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 23/183 (12%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRD----- 55
           M  ++ N FT E+L++ NL + DI  E+PV++ NS LI++F+ +L+  T  T  D     
Sbjct: 161 MAAFKENKFTSEELQKSNLRYQDILVELPVEIHNSHLITSFIHQLQTPTQATPSDLPPSL 220

Query: 56  -----------------YDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                            +D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+
Sbjct: 221 AALESSQYAKSSVLAPNFDNLSLSIDPFLEKNCDLLLDSIEVHHTETNNFQYYQRSLARE 280

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           QA+  +W  KR+ EN +R AA ++PL  ED    +FK   EP RL+S L + ++  Y  Q
Sbjct: 281 QAKITAWQNKRKTENASR-AALKQPLLPEDEWQRLFKLPQEPSRLDSMLNSRQVEQYARQ 339

Query: 159 ING 161
           ++ 
Sbjct: 340 VDS 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q6P381|EIF3H_XENTR Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 5/169 (2%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++ L 
Sbjct: 157 MEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLN 215

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct: 216 LSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRG 275

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQI---NGKALGK 166
           E  LPEED  N +FKP   P R++S LIA +I  Y   I     + LGK
Sbjct: 276 ETSLPEED-VNKLFKPPVPPSRMDSLLIAGQINTYIQHIKEFTSQNLGK 323

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q4WTA6|EIF3H_ASPFU Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G09970 PE=3 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 23/183 (12%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP--------- 50
           M  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+ P+ P         
Sbjct: 161 MTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTELPSSL 220

Query: 51  ------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                       +   ++D L LS  PFLE+N + L++ ++    E   FQ+Y RSL R+
Sbjct: 221 AALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLARE 280

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           Q +  +W QKR+ EN A +AA ++PL  ED    +FK   EP RLES L + ++  Y  Q
Sbjct: 281 QQRISAWQQKRKQEN-ATRAALKQPLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQ 339

Query: 159 ING 161
           I+ 
Sbjct: 340 IDS 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
356568923	337	PREDICTED: eukaryotic translation initia	0.889	0.477	0.888	2e-76
359806280	339	uncharacterized protein LOC100795273 [Gl	0.889	0.474	0.888	2e-76
449468786	337	PREDICTED: eukaryotic translation initia	0.900	0.483	0.865	3e-76
224128852	333	predicted protein [Populus trichocarpa]	0.988	0.537	0.794	9e-76
118481029	341	unknown [Populus trichocarpa]	0.988	0.524	0.794	9e-76
225433688	337	PREDICTED: eukaryotic translation initia	0.988	0.531	0.772	2e-75
357502831	339	Eukaryotic translation initiation factor	0.900	0.480	0.852	2e-75
224065052	340	predicted protein [Populus trichocarpa]	0.889	0.473	0.863	2e-74
388498918	337	unknown [Lotus japonicus]	0.889	0.477	0.869	2e-74
297849446	337	TIF3H1 [Arabidopsis lyrata subsp. lyrata	0.988	0.531	0.733	2e-71

>gi|356568923|ref|XP_003552657.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Glycine max]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 153/161 (95%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 159 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERN EFLIECMDDLS+EQQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 219 LSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING 161
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQING
Sbjct: 279 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQING 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806280|ref|NP_001240962.1| uncharacterized protein LOC100795273 [Glycine max] gi|255647702|gb|ACU24312.1| unknown [Glycine max]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 153/161 (95%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 161 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 220

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERN EFLIECMDDLS+EQQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 221 LSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAG 280

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING 161
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQING
Sbjct: 281 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQING 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468786|ref|XP_004152102.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus] gi|449521699|ref|XP_004167867.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 141/163 (86%), Positives = 155/163 (95%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR+N+FTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE D+PVTQ DYDRLQ
Sbjct: 159 MELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELESDSPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++PF+ERN+EFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRR EN  RKAAG
Sbjct: 219 LSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRAENMTRKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKA 163
           EEPLPEEDP+NPIFKP+PEP RL+S+LI N+IANYCNQING A
Sbjct: 279 EEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVA 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128852|ref|XP_002320437.1| predicted protein [Populus trichocarpa] gi|222861210|gb|EEE98752.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 155 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQ 214

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LERN+EFLIECMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAG
Sbjct: 215 LSTSPYLERNVEFLIECMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAG 274

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
           EEPLPEEDP NPIFKPIPEP RL+SFLI N+IANYCNQING + G+  +++   +++  N
Sbjct: 275 EEPLPEEDPLNPIFKPIPEPSRLDSFLITNQIANYCNQINGVS-GQSFSRLYLMKALHEN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481029|gb|ABK92468.1| unknown [Populus trichocarpa]

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 163 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQ 222

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LERN+EFLIECMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAG
Sbjct: 223 LSTSPYLERNVEFLIECMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAG 282

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
           EEPLPEEDP NPIFKPIPEP RL+SFLI N+IANYCNQING + G+  +++   +++  N
Sbjct: 283 EEPLPEEDPLNPIFKPIPEPSRLDSFLITNQIANYCNQINGVS-GQSFSRLYLMKALHEN 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433688|ref|XP_002266909.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera] gi|296089621|emb|CBI39440.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/180 (77%), Positives = 163/180 (90%), Gaps = 1/180 (0%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 159 MELYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++P++ERN+EFLIECMDDLS+EQQKFQFYYR+L+RQQ QQQ+WLQKRR EN ARK AG
Sbjct: 219 LSTNPYMERNLEFLIECMDDLSMEQQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
           E+PLPEEDP+NPIFKPIPEP RL+SFLI N+I+NYCNQING A G+  +++   +++  N
Sbjct: 279 EDPLPEEDPANPIFKPIPEPSRLDSFLITNQISNYCNQINGVA-GQSFSRLYLMKALHEN 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502831|ref|XP_003621704.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula] gi|124360846|gb|ABN08818.1| Mov34-1 [Medicago truncatula] gi|355496719|gb|AES77922.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/163 (85%), Positives = 154/163 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ D+DRLQ
Sbjct: 160 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDFDRLQ 219

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERNMEFLIECMDDLS+EQQKFQF+YRSL+RQQAQQQ+WLQKRR +N AR+AAG
Sbjct: 220 LSTSSLMERNMEFLIECMDDLSIEQQKFQFHYRSLSRQQAQQQAWLQKRRADNMARRAAG 279

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKA 163
           EEPLPEEDP+NPIFKP+ EP RLESFLI N+I+NYCNQING A
Sbjct: 280 EEPLPEEDPANPIFKPLAEPSRLESFLITNQISNYCNQINGVA 322

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065052|ref|XP_002301647.1| predicted protein [Populus trichocarpa] gi|222843373|gb|EEE80920.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/161 (86%), Positives = 151/161 (93%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMT LE DTPVTQ DYDRLQ
Sbjct: 162 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTGLEADTPVTQCDYDRLQ 221

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LE N+EFLIECMDDLSVEQQKFQ++YR+L+RQQAQQQ+WLQKRR EN  RKAAG
Sbjct: 222 LSTSPYLESNVEFLIECMDDLSVEQQKFQYHYRNLSRQQAQQQAWLQKRRSENMTRKAAG 281

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING 161
           EEPLPEEDPSNPIFKPIPEP RL SFLI N++ANYCNQING
Sbjct: 282 EEPLPEEDPSNPIFKPIPEPSRLGSFLITNQMANYCNQING 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498918|gb|AFK37525.1| unknown [Lotus japonicus]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/161 (86%), Positives = 151/161 (93%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+ YRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 159 MEPYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  LERN E+LIECMDDLS+EQQKFQ +YRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 219 LSTSSLLERNTEYLIECMDDLSLEQQKFQLHYRSLSRQQAQQQAWLQKRRTENMARKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING 161
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQING
Sbjct: 279 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQING 319

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849446|ref|XP_002892604.1| TIF3H1 [Arabidopsis lyrata subsp. lyrata] gi|297338446|gb|EFH68863.1| TIF3H1 [Arabidopsis lyrata subsp. lyrata]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 158/180 (87%), Gaps = 1/180 (0%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct: 159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
            S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct: 219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
           EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QING A G+  +++  ++++  N
Sbjct: 279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVA-GQNFSRLYLTKALHEN 337

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2196469	337	TIF3H1 "AT1G10840" [Arabidopsi	0.988	0.531	0.733	2.1e-70
UNIPROTKB|B5FY35	348	EIF3H "Eukaryotic translation	0.944	0.491	0.384	4.4e-29
UNIPROTKB|Q5ZLE6	348	EIF3H "Eukaryotic translation	0.939	0.488	0.387	9.1e-29
UNIPROTKB|B5RI54	344	eif3h "Eukaryotic translation	0.966	0.508	0.353	1.2e-28
ZFIN|ZDB-GENE-040808-19	335	eif3ha "eukaryotic translation	0.961	0.519	0.377	1.9e-28
ZFIN|ZDB-GENE-051030-42	333	eif3hb "eukaryotic translation	0.961	0.522	0.366	3.1e-28
UNIPROTKB|Q5PPY6	334	eif3h "Eukaryotic translation	0.961	0.520	0.361	8.2e-28
UNIPROTKB|Q6P381	335	eif3h "Eukaryotic translation	0.961	0.519	0.373	8.2e-28
UNIPROTKB|B3KS98	366	EIF3S3 "Eukaryotic translation	0.939	0.464	0.382	1.7e-27
UNIPROTKB|O15372	352	EIF3H "Eukaryotic translation	0.939	0.482	0.382	1.7e-27

TAIR|locus:2196469 TIF3H1 "AT1G10840" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 132/180 (73%), Positives = 158/180 (87%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct:   159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
              S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct:   219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIRPN 180
             EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QING A G+  +++  ++++  N
Sbjct:   279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVA-GQNFSRLYLTKALHDN 337

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|B5FY35 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Taeniopygia guttata (taxid:59729)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 68/177 (38%), Positives = 115/177 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L 
Sbjct:   170 MEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLS 228

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   229 LASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRG 288

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQI---NGKALGK-GVTQILQ 173
             E PLPEED  N +FKP   PPR+ES LIA +I  YC  I   N + LGK  + Q LQ
Sbjct:   289 EPPLPEED-INKLFKPPQPPPRMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQ 344

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q5ZLE6 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 69/178 (38%), Positives = 117/178 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L 
Sbjct:   170 MEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLS 228

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   229 LASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRG 288

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQI---NGKALGK-GVTQILQ 173
             E PLPEED  N +FKP P+PP R+ES LIA +I  YC  I   N + LGK  + Q LQ
Sbjct:   289 EAPLPEED-INKLFKP-PQPPARMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQ 344

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|B5RI54 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Salmo salar (taxid:8030)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 63/178 (35%), Positives = 113/178 (63%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++ L 
Sbjct:   166 MEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLN 224

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  G
Sbjct:   225 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRG 284

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKALGKGVTQILQSESIR 178
             E PLPEED S  +FKP   PPR+++ LIA +I NYC  +  +   + + ++  +E+++
Sbjct:   285 ETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVK-EFTSQNLGKLFMAEALQ 340

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-040808-19 eif3ha "eukaryotic translation initiation factor 3, subunit H, a" [Danio rerio (taxid:7955)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 68/180 (37%), Positives = 116/180 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +FT E L++  +++  +FEE+P+ + NS LI+  M +L+  + +  + ++ L 
Sbjct:   157 MEICKEKDFTPEGLKKAAVAYEHMFEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLN 215

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ G
Sbjct:   216 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRG 275

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQIN---GKALGK-GVTQILQSES 176
             E PLPEED S  +FK    PPR+++ LIA +I NYC  I     + LGK  + + LQS S
Sbjct:   276 EPPLPEEDISK-MFKAPQAPPRMDTLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSNS 334

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0048882 "lateral line development" evidence=IMP

GO:0001944 "vasculature development" evidence=IMP

ZFIN|ZDB-GENE-051030-42 eif3hb "eukaryotic translation initiation factor 3, subunit H, b" [Danio rerio (taxid:7955)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 66/180 (36%), Positives = 115/180 (63%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ ++ +  +FEE+P+ + NS LI+  + ELE  +    + ++ L 
Sbjct:   155 MEICKEKDFSSEGLKKASVGYEHMFEEVPIVIKNSHLINVLLWELEEKSTAADK-HELLS 213

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ G
Sbjct:   214 LSSSSHLEKSLQMLMDRVDDMSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRG 273

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQIN---GKALGK-GVTQILQSES 176
             E PLPEED +  +FKP   PPR+++ LIA++I  YC  I     + LGK  + + LQ  S
Sbjct:   274 EPPLPEEDLTK-MFKPPQPPPRMDTLLIASQINTYCQTIKEFTSQNLGKLFMAEALQGPS 332

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|Q5PPY6 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus laevis (taxid:8355)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 65/180 (36%), Positives = 115/180 (63%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++ L 
Sbjct:   156 MEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLN 214

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + G
Sbjct:   215 LSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRG 274

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQING---KALGK-GVTQILQSES 176
             E PLPEED  N +FKP   P R++  LIA +I  Y   I G   + LGK  + + LQ ++
Sbjct:   275 ETPLPEEDV-NKMFKPPVTPSRMDPLLIAGQINTYIQHIKGFTSQNLGKLFMAEALQDQT 333

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6P381 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 68/182 (37%), Positives = 117/182 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++ L 
Sbjct:   157 MEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLN 215

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   216 LSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRG 275

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQIN---GKALGK-GVTQILQSE 175
             E  LPEED  N +FKP P PP R++S LIA +I  Y   I     + LGK  + + +Q  
Sbjct:   276 ETSLPEEDV-NKLFKP-PVPPSRMDSLLIAGQINTYIQHIKEFTSQNLGKLFMAEAMQDP 333

Query:   176 SI 177
             +I
Sbjct:   334 TI 335

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|B3KS98 EIF3S3 "Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 68/178 (38%), Positives = 114/178 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L 
Sbjct:   188 MEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLS 246

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   247 LASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRG 306

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQIN---GKALGK-GVTQILQ 173
             E PLPEED S  +FKP P+PP R++S LIA +I  YC  I     + LGK  + Q LQ
Sbjct:   307 EPPLPEEDLSK-LFKP-PQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQ 362

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O15372 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 68/178 (38%), Positives = 114/178 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L 
Sbjct:   174 MEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLS 232

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   233 LASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRG 292

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQIN---GKALGK-GVTQILQ 173
             E PLPEED S  +FKP P+PP R++S LIA +I  YC  I     + LGK  + Q LQ
Sbjct:   293 EPPLPEEDLSK-LFKP-PQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQ 348

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Z2	EIF3H_ARATH	No assigned EC number	0.7333	0.9889	0.5311	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XIV3113	SubName- Full=Putative uncharacterized protein; (333 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0022009302	hypothetical protein (343 aa)				•		•			0.836
	estExt_fgenesh4_pm.C_LG_VIII0284	hypothetical protein (343 aa)				•		•			0.836
	estExt_Genewise1_v1.C_290097	hypothetical protein (465 aa)						•			0.834
	eugene3.00030772	hypothetical protein (464 aa)						•			0.834
	grail3.0038004701	hypothetical protein (452 aa)						•			0.811
	estExt_fgenesh4_pm.C_LG_XIII0470	SubName- Full=Putative uncharacterized protein; (271 aa)						•			0.811
	eugene3.01650024	hypothetical protein (444 aa)						•			0.811
	eugene3.03280006	hypothetical protein (455 aa)						•			0.811
	estExt_Genewise1_v1.C_LG_XIV3582	SubName- Full=Putative uncharacterized protein;; Seems to be required for maximal rate of prote [...] (145 aa)						•			0.806
	fgenesh4_pg.C_scaffold_1866000002	annotation not avaliable (150 aa)						•			0.804

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
cd08065	266	cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN)	1e-58

>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

 Score =  183 bits (467), Expect = 1e-58
 Identities = 74/128 (57%), Positives = 99/128 (77%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LY+   F+ E LRE NL++ +IFEEIPV + NS L++A ++ELE D+P +Q D+DRL 
Sbjct: 139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLD 198

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++ FLE+N+E L+E +D+LS EQ KF +Y R+L RQQAQ Q WLQKR+ EN  R+A G
Sbjct: 199 LSTNSFLEKNLELLMESVDELSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARG 258

Query: 121 EEPLPEED 128
           EEPLPEED
Sbjct: 259 EEPLPEED 266

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, differentiation, and apoptosis, and EIF3h in patients with non-small cell lung cancer (NSCLC) improves survival if treated with the Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor (EGFR-TKI), Gefitinib. Plant eIF3h is implicated in translation of specific mRNAs. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG1560	339	consensus Translation initiation factor 3, subunit	100.0
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	100.0
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	96.8
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	84.47

>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-57  Score=391.58  Aligned_cols=175  Identities=38%  Similarity=0.610  Sum_probs=167.1

Q ss_pred             CcccccCCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcC--CCCCCCCCCCcccCCCCChhHHHHHHHHHHhH
Q 030182            1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECM   78 (181)
Q Consensus         1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~--~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~v   78 (181)
                      |++|++++||+|.|+++||||+|||+||||+||||||+|++|++|+  .+.+...+.+..||||+...|+|+++.||++|
T Consensus       158 m~~~kekdwtpealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~v  237 (339)
T KOG1560|consen  158 MAAHKEKDWTPEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERV  237 (339)
T ss_pred             HHHHhcCCCCHHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999997  44445555689999999999999999999999


Q ss_pred             HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 030182           79 DDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ  158 (181)
Q Consensus        79 D~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~  158 (181)
                      |++++|++++++|||+++|||++++||++||++||+.|+++|+||||+|| |.|+||+|++|.|||++|+|+||+++|++
T Consensus       238 DEl~qe~~~l~kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~  316 (339)
T KOG1560|consen  238 DELHQEIVNLNKYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQ  316 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988 99999999999999999999999999999


Q ss_pred             HHHhh---hHHH-HHHHhhccC
Q 030182          159 INGKA---LGKG-VTQILQSES  176 (181)
Q Consensus       159 i~~f~---~~k~-~~~~lq~~~  176 (181)
                      |..||   ++|+ +|+++|..+
T Consensus       317 ike~tSqnl~Klfiaea~~~~k  338 (339)
T KOG1560|consen  317 IKEFTSQNLSKLFIAEALQESK  338 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            99999   9999 999999764

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=100.00  E-value=3.2e-39  Score=277.20  Aligned_cols=128  Identities=58%  Similarity=0.975  Sum_probs=122.8

Q ss_pred             CcccccCCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHH
Q 030182            1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDD   80 (181)
Q Consensus         1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~   80 (181)
                      |.+|++|+|+.++++++++++.+||+||||+|+||+|+++||++|.+..+...++|++|+|++.++||++|+.|+++||+
T Consensus       139 ~~~~~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~  218 (266)
T cd08065         139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDE  218 (266)
T ss_pred             HHHhhcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999987766654699999999999999999999999999


Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030182           81 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED  128 (181)
Q Consensus        81 l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed  128 (181)
                      |++|++||++|||+++|||++++||++|||+||++|+++|++|||+||
T Consensus       219 l~~e~~~~~~y~r~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~  266 (266)
T cd08065         219 LSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED  266 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999975

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=96.80  E-value=0.0016  Score=56.56  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=38.0

Q ss_pred             CCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCC
Q 030182            7 NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEP   47 (181)
Q Consensus         7 ~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~   47 (181)
                      |.|+.++++ ..+++.++|.||||.|+||+|.+++|..|..
T Consensus       162 ~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~  201 (268)
T cd08069         162 GHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWN  201 (268)
T ss_pred             CccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHH
Confidence            789999999 9999999999999999999999999999854

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=84.47  E-value=2.8  Score=36.07  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             CcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHHhHHHHhHHHHHHHHH
Q 030182           20 SWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL   95 (181)
Q Consensus        20 t~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l   95 (181)
                      ++..+|+|||+.|+|+.-=.+-+.-+........         ....+..+++.+..++..|..-......|-+.+
T Consensus       138 ~~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~---------~~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V  204 (265)
T cd08064         138 TLGSMFVPIPLELLYSEAERVALDLLAKTLASPS---------RSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV  204 (265)
T ss_pred             CcceEEEEcceeeecCcHHHHHHHHHHhhccCCc---------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999877777766643322111         011233566666666666665555555666554

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	89.92

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.92  E-value=0.55  Score=40.20  Aligned_cols=126  Identities=10%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             CCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHHhHHHHhHH
Q 030182            9 FTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKF   88 (181)
Q Consensus         9 ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~l~~Eq~k~   88 (181)
                      +....+...+..+...|.++||.++.|.|-..+|..|......     ..  |+..++ .++++...+++.++..   ..
T Consensus       180 ~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~-----~~--l~~~~~-~~~~~~~~~~i~~m~~---~~  248 (306)
T 4b4t_V          180 LNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ-----SG--LKMYDY-EEKEESNLAATKSMVK---IA  248 (306)
T ss_dssp             ----------------CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CH
T ss_pred             cCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc-----cc--cccCcH-HHHHHHHHHHHHHHHH---HH
Confidence            3444555566677789999999999999999999888543211     11  223332 3444544555555432   33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 030182           89 QFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKAL  164 (181)
Q Consensus        89 ~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~i~~f~~  164 (181)
                      ..|.+.+..++..-..++.        .+.     .+.-|+. +     .-....+.|+.++-++.+|-.|+.++|
T Consensus       249 ~~y~k~v~~e~~~~~~~l~--------~~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~  305 (306)
T 4b4t_V          249 EQYSKRIEEEKELTEEELK--------TRY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI  305 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------HTC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccCCHHHHH--------hhc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3466665554433222221        001     1111210 0     012445889999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00