Citrus Sinensis ID: 030187
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | 2.2.26 [Sep-21-2011] | |||||||
| P51823 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.988 | 1e-103 | |
| O48920 | 181 | ADP-ribosylation factor O | N/A | no | 1.0 | 1.0 | 0.988 | 1e-103 | |
| Q06396 | 181 | ADP-ribosylation factor 1 | yes | no | 1.0 | 1.0 | 0.983 | 1e-102 | |
| P0DH91 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.988 | 1e-102 | |
| Q9LQC8 | 181 | ADP-ribosylation factor 2 | yes | no | 1.0 | 1.0 | 0.988 | 1e-102 | |
| P36397 | 181 | ADP-ribosylation factor 1 | yes | no | 1.0 | 1.0 | 0.988 | 1e-102 | |
| P51822 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.983 | 1e-102 | |
| O23778 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.977 | 1e-101 | |
| P49076 | 181 | ADP-ribosylation factor O | N/A | no | 1.0 | 1.0 | 0.966 | 1e-101 | |
| O48649 | 181 | ADP-ribosylation factor 1 | N/A | no | 1.0 | 1.0 | 0.966 | 1e-100 |
| >sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Vigna unguiculata (taxid: 3917) |
| >sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Daucus carota (taxid: 4039) |
| >sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/181 (97%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQY 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Catharanthus roseus (taxid: 4058) |
| >sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Zea mays (taxid: 4577) |
| >sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 178/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKL RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Salix bakko (taxid: 72444) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | ||||||
| 296089819 | 591 | unnamed protein product [Vitis vinifera] | 1.0 | 0.306 | 1.0 | 1e-103 | |
| 297736783 | 211 | unnamed protein product [Vitis vinifera] | 1.0 | 0.857 | 1.0 | 1e-102 | |
| 357485863 | 454 | ADP-ribosylation factor [Medicago trunca | 1.0 | 0.398 | 0.994 | 1e-102 | |
| 357495837 | 248 | ADP-ribosylation factor [Medicago trunca | 1.0 | 0.729 | 0.988 | 1e-102 | |
| 224068638 | 181 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 1.0 | 1e-102 | |
| 192910700 | 181 | ADP ribosylation factor 002 [Elaeis guin | 1.0 | 1.0 | 0.994 | 1e-102 | |
| 351734536 | 181 | uncharacterized protein LOC100306021 [Gl | 1.0 | 1.0 | 0.994 | 1e-102 | |
| 20161472 | 376 | ADP-ribosylation factor [Oryza sativa Ja | 0.994 | 0.478 | 0.983 | 1e-102 | |
| 356534998 | 181 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.994 | 1e-102 | |
| 224122864 | 181 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.994 | 1e-102 |
| >gi|296089819|emb|CBI39638.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 411 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 470
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 471 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 530
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 590
Query: 181 A 181
A
Sbjct: 591 A 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736783|emb|CBI25984.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 31 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 90
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 91 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 150
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 151 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 210
Query: 181 A 181
A
Sbjct: 211 A 211
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485863|ref|XP_003613219.1| ADP-ribosylation factor [Medicago truncatula] gi|355514554|gb|AES96177.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 274 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 333
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 334 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 393
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 394 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 453
Query: 181 A 181
A
Sbjct: 454 A 454
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495837|ref|XP_003618207.1| ADP-ribosylation factor [Medicago truncatula] gi|355493222|gb|AES74425.1| ADP-ribosylation factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 68 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 127
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 128 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 187
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 188 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 247
Query: 181 A 181
A
Sbjct: 248 A 248
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068638|ref|XP_002302788.1| predicted protein [Populus trichocarpa] gi|224124602|ref|XP_002330064.1| predicted protein [Populus trichocarpa] gi|224128225|ref|XP_002320274.1| predicted protein [Populus trichocarpa] gi|225432130|ref|XP_002264654.1| PREDICTED: ADP-ribosylation factor 2-like [Vitis vinifera] gi|225437665|ref|XP_002279216.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Vitis vinifera] gi|225450510|ref|XP_002281047.1| PREDICTED: ADP-ribosylation factor 2-like [Vitis vinifera] gi|255548341|ref|XP_002515227.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|255548347|ref|XP_002515230.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|356499703|ref|XP_003518676.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|356534669|ref|XP_003535875.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|356575319|ref|XP_003555789.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Glycine max] gi|356575321|ref|XP_003555790.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Glycine max] gi|357442149|ref|XP_003591352.1| ADP ribosylation factor [Medicago truncatula] gi|359480198|ref|XP_003632415.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Vitis vinifera] gi|449436393|ref|XP_004135977.1| PREDICTED: ADP-ribosylation factor 2-like [Cucumis sativus] gi|449524537|ref|XP_004169278.1| PREDICTED: ADP-ribosylation factor 2-like [Cucumis sativus] gi|77812440|gb|ABB03801.1| ADP ribosylation factor 002 [Daucus carota] gi|118482447|gb|ABK93146.1| unknown [Populus trichocarpa] gi|118482485|gb|ABK93165.1| unknown [Populus trichocarpa] gi|217072062|gb|ACJ84391.1| unknown [Medicago truncatula] gi|222844514|gb|EEE82061.1| predicted protein [Populus trichocarpa] gi|222861047|gb|EEE98589.1| predicted protein [Populus trichocarpa] gi|222871489|gb|EEF08620.1| predicted protein [Populus trichocarpa] gi|223545707|gb|EEF47211.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223545710|gb|EEF47214.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|327505557|gb|AEA92306.1| Arf2 [Hevea brasiliensis] gi|355480400|gb|AES61603.1| ADP ribosylation factor [Medicago truncatula] gi|388492408|gb|AFK34270.1| unknown [Medicago truncatula] gi|406657702|gb|AFS50009.1| hypothetical protein [Dendrobium officinale] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|192910700|gb|ACF06458.1| ADP ribosylation factor 002 [Elaeis guineensis] gi|219957610|gb|ACL67836.1| ADP ribosylation factor [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Elaeis guineensis Species: Elaeis guineensis Genus: Elaeis Family: Arecaceae Order: Arecales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351734536|ref|NP_001236384.1| uncharacterized protein LOC100306021 [Glycine max] gi|356497724|ref|XP_003517709.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|356502055|ref|XP_003519837.1| PREDICTED: ADP-ribosylation factor 2-like isoform 1 [Glycine max] gi|356502057|ref|XP_003519838.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Glycine max] gi|356577891|ref|XP_003557055.1| PREDICTED: ADP-ribosylation factor 2-like [Glycine max] gi|449434941|ref|XP_004135254.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Cucumis sativus] gi|449517567|ref|XP_004165817.1| PREDICTED: ADP-ribosylation factor 2-like isoform 2 [Cucumis sativus] gi|217074208|gb|ACJ85464.1| unknown [Medicago truncatula] gi|224284028|gb|ACN39752.1| unknown [Picea sitchensis] gi|224284100|gb|ACN39787.1| unknown [Picea sitchensis] gi|224286854|gb|ACN41130.1| unknown [Picea sitchensis] gi|255627305|gb|ACU13997.1| unknown [Glycine max] gi|255645449|gb|ACU23220.1| unknown [Glycine max] gi|388493526|gb|AFK34829.1| unknown [Medicago truncatula] gi|388511481|gb|AFK43802.1| unknown [Lotus japonicus] gi|388512615|gb|AFK44369.1| unknown [Lotus japonicus] gi|388517053|gb|AFK46588.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20161472|dbj|BAB90396.1| ADP-ribosylation factor [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/180 (98%), Positives = 180/180 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 179 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 238
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 239 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 298
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 299 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 358
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534998|ref|XP_003536036.1| PREDICTED: ADP-ribosylation factor-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122864|ref|XP_002318935.1| predicted protein [Populus trichocarpa] gi|224124598|ref|XP_002330063.1| predicted protein [Populus trichocarpa] gi|356571535|ref|XP_003553932.1| PREDICTED: ADP-ribosylation factor isoform 1 [Glycine max] gi|356571537|ref|XP_003553933.1| PREDICTED: ADP-ribosylation factor isoform 2 [Glycine max] gi|356571539|ref|XP_003553934.1| PREDICTED: ADP-ribosylation factor isoform 3 [Glycine max] gi|118482509|gb|ABK93177.1| unknown [Populus trichocarpa] gi|118483518|gb|ABK93657.1| unknown [Populus trichocarpa] gi|118487697|gb|ABK95673.1| unknown [Populus trichocarpa] gi|222857311|gb|EEE94858.1| predicted protein [Populus trichocarpa] gi|222871488|gb|EEF08619.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 181 | ||||||
| UNIPROTKB|P51823 | 181 | ARF "ADP-ribosylation factor 2 | 1.0 | 1.0 | 0.988 | 1.3e-93 | |
| TAIR|locus:2019948 | 181 | ARFA1F "ADP-ribosylation facto | 1.0 | 1.0 | 0.988 | 2.7e-93 | |
| TAIR|locus:2098063 | 181 | ARFA1E "ADP-ribosylation facto | 1.0 | 1.0 | 0.988 | 2.7e-93 | |
| TAIR|locus:2028926 | 181 | ARF1 "ADP-ribosylation factor | 1.0 | 1.0 | 0.988 | 3.4e-93 | |
| TAIR|locus:2026780 | 181 | ARFA1D [Arabidopsis thaliana ( | 1.0 | 1.0 | 0.988 | 3.4e-93 | |
| TAIR|locus:2065114 | 181 | ARF1A1C [Arabidopsis thaliana | 1.0 | 1.0 | 0.988 | 4.3e-93 | |
| TAIR|locus:2222677 | 188 | ARFA1B "ADP-ribosylation facto | 0.994 | 0.957 | 0.988 | 5.5e-93 | |
| CGD|CAL0003401 | 181 | ARF2 [Candida albicans (taxid: | 1.0 | 1.0 | 0.861 | 1.9e-83 | |
| UNIPROTKB|Q5AND9 | 181 | ARF2 "Potential ADP-ribosylati | 1.0 | 1.0 | 0.861 | 1.9e-83 | |
| UNIPROTKB|P84081 | 181 | ARF2 "ADP-ribosylation factor | 0.994 | 0.994 | 0.894 | 2.4e-83 |
| UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 179/181 (98%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 179/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 179/181 (98%), Positives = 179/181 (98%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
|
| TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 178/180 (98%), Positives = 179/180 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180
|
|
| CGD|CAL0003401 ARF2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 156/181 (86%), Positives = 172/181 (95%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF+KLF+ LF KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFSKLFANLFGNKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL +MLNEDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRIAEAREELQQMLNEDELRDAL 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEIT+KLGLHS+RQR WYIQ+TCAT+G+GLYEGL+WLS N+ N
Sbjct: 121 LLVFANKQDLPNAMNAAEITEKLGLHSIRQRPWYIQATCATTGDGLYEGLEWLSTNLKNS 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
|
| UNIPROTKB|Q5AND9 ARF2 "Potential ADP-ribosylation factor" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 156/181 (86%), Positives = 172/181 (95%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF+KLF+ LF KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFSKLFANLFGNKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL +MLNEDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRIAEAREELQQMLNEDELRDAL 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEIT+KLGLHS+RQR WYIQ+TCAT+G+GLYEGL+WLS N+ N
Sbjct: 121 LLVFANKQDLPNAMNAAEITEKLGLHSIRQRPWYIQATCATTGDGLYEGLEWLSTNLKNS 180
Query: 181 A 181
+
Sbjct: 181 S 181
|
|
| UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 161/180 (89%), Positives = 168/180 (93%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F KLF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.9889 | 1.0 | 1.0 | N/A | no |
| P51644 | ARF4_XENLA | No assigned EC number | 0.8166 | 0.9944 | 1.0 | N/A | no |
| O00909 | ARF1_DICDI | No assigned EC number | 0.8508 | 1.0 | 0.9945 | yes | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.8784 | 1.0 | 0.9890 | N/A | no |
| P36397 | ARF1_ARATH | No assigned EC number | 0.9889 | 1.0 | 1.0 | yes | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.8729 | 1.0 | 1.0 | N/A | no |
| Q7RVM2 | ARF_NEUCR | No assigned EC number | 0.8757 | 0.9779 | 0.9567 | N/A | no |
| Q3SZF2 | ARF4_BOVIN | No assigned EC number | 0.8166 | 0.9944 | 1.0 | no | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.8826 | 0.9889 | 0.9835 | N/A | no |
| P84082 | ARF2_RAT | No assigned EC number | 0.8944 | 0.9944 | 0.9944 | yes | no |
| P84083 | ARF5_RAT | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| P84080 | ARF1_BOVIN | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| P84081 | ARF2_BOVIN | No assigned EC number | 0.8944 | 0.9944 | 0.9944 | yes | no |
| Q5R5P7 | ARF3_PONAB | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | yes | no |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.8674 | 1.0 | 1.0 | yes | no |
| P84084 | ARF5_MOUSE | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.8202 | 0.9834 | 0.9944 | N/A | no |
| P0DH91 | ARF2B_ARATH | No assigned EC number | 0.9889 | 1.0 | 1.0 | yes | no |
| P51823 | ARF2_ORYSJ | No assigned EC number | 0.9889 | 1.0 | 1.0 | yes | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.9613 | 1.0 | 1.0 | N/A | no |
| P51824 | ARF1_SOLTU | No assigned EC number | 0.9444 | 0.9944 | 0.9137 | N/A | no |
| P84077 | ARF1_HUMAN | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.8666 | 0.9944 | 1.0 | yes | no |
| P84085 | ARF5_HUMAN | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| P61209 | ARF1_DROME | No assigned EC number | 0.8826 | 0.9889 | 0.9835 | yes | no |
| P84079 | ARF1_RAT | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| P84078 | ARF1_MOUSE | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | yes | no |
| P18085 | ARF4_HUMAN | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| P0CM17 | ARF_CRYNB | No assigned EC number | 0.8674 | 1.0 | 0.9945 | N/A | no |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.8674 | 1.0 | 0.9945 | yes | no |
| Q06396 | ARF1_ORYSJ | No assigned EC number | 0.9834 | 1.0 | 1.0 | yes | no |
| P40945 | ARF2_DROME | No assigned EC number | 0.8388 | 0.9944 | 1.0 | no | no |
| P61205 | ARF3_MOUSE | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | no | no |
| P61204 | ARF3_HUMAN | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | yes | no |
| P61207 | ARF3_TAKRU | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | N/A | no |
| P61206 | ARF3_RAT | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | no | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.9668 | 1.0 | 1.0 | N/A | no |
| Q8BSL7 | ARF2_MOUSE | No assigned EC number | 0.8944 | 0.9944 | 0.9944 | yes | no |
| Q5RCF1 | ARF4_PONAB | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| Q9LQC8 | ARF2A_ARATH | No assigned EC number | 0.9889 | 1.0 | 1.0 | yes | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.9668 | 1.0 | 1.0 | N/A | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.8888 | 0.9944 | 0.9944 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.8531 | 0.9779 | 0.9672 | N/A | no |
| Q5E9I6 | ARF3_BOVIN | No assigned EC number | 0.8777 | 0.9944 | 0.9944 | no | no |
| P49702 | ARF5_CHICK | No assigned EC number | 0.7944 | 0.9944 | 1.0 | no | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.9834 | 1.0 | 1.0 | N/A | no |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.8342 | 1.0 | 1.0 | yes | no |
| P61751 | ARF4_RAT | No assigned EC number | 0.8055 | 0.9944 | 1.0 | no | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.9779 | 1.0 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 181 | |||
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-137 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-128 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-128 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 1e-122 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-113 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-108 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-105 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 1e-93 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 8e-88 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 7e-71 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-69 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-68 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 3e-68 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 5e-61 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-57 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-46 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 2e-42 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-39 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-37 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 1e-33 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-30 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-30 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-19 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-17 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 1e-15 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 2e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 4e-13 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-12 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 2e-11 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 3e-10 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 7e-10 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-09 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 7e-09 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-08 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-08 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-07 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 3e-07 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 3e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 6e-07 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 6e-07 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 1e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 2e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 2e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 3e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-06 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 5e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 7e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 8e-06 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-05 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 1e-05 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-05 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 1e-05 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-05 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 4e-05 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 5e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 6e-05 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 2e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 3e-04 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 5e-04 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 5e-04 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 5e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 6e-04 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 7e-04 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 8e-04 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 9e-04 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 0.001 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 0.003 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 0.003 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 380 bits (977), Expect = e-137
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 181 A 181
A
Sbjct: 181 A 181
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-128
Identities = 148/159 (93%), Positives = 156/159 (98%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDELRDAVLLVFANKQDLPNAM+AA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
E+TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSNN
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 356 bits (914), Expect = e-128
Identities = 141/181 (77%), Positives = 160/181 (88%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL + F LF KKE+RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ FT+WDVGGQDK+RPLWRHY+QNT GLIFVVDSNDR+R+ +AR+EL RML+EDELRDAV
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAM+ E+T+KLGLHS+RQR+WYIQ CAT+ +GLYEGLDWLS NI
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180
Query: 181 A 181
Sbjct: 181 M 181
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 343 bits (880), Expect = e-122
Identities = 151/175 (86%), Positives = 162/175 (92%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KLFS+LF KEMRILMVGLDAAGKTTILYKLKLGE VTTIPTIGFNVETV YKNISFT
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWDVGGQDKIRPLWRHY+ NTQGLIFVVDSNDRDR+ EAR+ELHRMLNEDELRDAV+LVF
Sbjct: 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
ANKQDLP+AM AAEIT+KLGLHS+R R+WYIQ TCATSG+GLYEGL WLSNN+ N
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-113
Identities = 121/174 (69%), Positives = 141/174 (81%), Gaps = 1/174 (0%)
Query: 5 FTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + ++LF KEMRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN+ F
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
TVWDVGGQ+ +RPLWR+YF NT +IFVVDS DRDR+ EA++ELH +LNE+EL DA LL+
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
ANKQDLP AM+ AEI + LGLH L+ R W IQ A +GEGL EGLDWLSN I
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = e-108
Identities = 126/168 (75%), Positives = 146/168 (86%)
Query: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
S+LF KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDV
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQDKIRPLWRHY+ TQGLIFVVDS DRDR+ EAR ELHR++N+ E+RDA+LLVFANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
DLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WLS+N
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = e-105
Identities = 110/158 (69%), Positives = 135/158 (85%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RILM+GLD AGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN+ FTVWDVGGQDKIRPLW
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY++NT GLIFVVDS+DR+R+ EA++ELH++LNE+EL+ A LL+ ANKQDLP A+ +E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ + LGL S++ R W+IQ A +G+GL EGLDWL
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 1e-93
Identities = 103/157 (65%), Positives = 126/157 (80%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ IRP W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
R Y+ NT +I+VVDS DRDR+ ++ ELH ML E+EL+DAVLLVFANKQD+P A++ AE
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
+ +KLGL L+ R W I T AT GEGL EG+DWL N
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVN 157
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 8e-88
Identities = 93/172 (54%), Positives = 126/172 (73%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
F+ L+S F +KE ++++VGLD AGKTTILY+ LGE+V T PTIG NVE + YKNI F
Sbjct: 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFL 62
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+WD+GGQ+ +R W Y+ NT +I V+DS DR+R+ ++EL++ML ++LR AVLLV
Sbjct: 63 MWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
ANKQDL AM AEI++ LGL S+R W+IQ CA +GEGL EGLDW+++
Sbjct: 123 ANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 7e-71
Identities = 99/160 (61%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+HY+ NTQ ++FV+DS+ RDRV EA EL ++L E ELRDA+LL+FANKQD+ A++ E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+T+ L LH L R WYIQ A SG GLYEGLDWLS +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 1e-69
Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRILM+GLD AGKTTIL K GE ++TI PT+GFN++T+EY +WDVGGQ +
Sbjct: 13 REMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T LI+VVDS+DR R+ + + EL ++L E+ L A LL+FANKQDLP A+
Sbjct: 72 RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ EI + L L S++ HW I A +GE L +G+DWL ++
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVDD 173
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-68
Identities = 82/166 (49%), Positives = 112/166 (67%)
Query: 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
+ +++E+RIL++GLD AGKTTIL +L +I PT GFN++ V+ VWD+GG
Sbjct: 9 KPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGG 68
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q KIRP WR+YF+NT LI+V+DS DR R EA EL +L E++L +LVFANKQDL
Sbjct: 69 QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
A A E+ + L LH +R R W+IQ+ A +GEGL EG++W+ N
Sbjct: 129 LTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-68
Identities = 76/154 (49%), Positives = 111/154 (72%), Gaps = 2/154 (1%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL 77
++L++GLD+AGK+T+LYKLK E+VTTIPT+GFNVE ++ K++S TVWDVGGQ+K+R +
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +NT GL++VVDS+D R+ E++ EL +L + ++ +++ ANKQDLP A+ A
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 170
EIT + L R WY+Q A +GEGL E
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 5e-61
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 6/166 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+ I+M+GLD+AGKTT+LY+LK E V T+PT GFN E ++ K ++F WDVGGQ+
Sbjct: 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++ E + +LV ANKQDLPN
Sbjct: 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123
Query: 133 AMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
A+ +E+ L LH L W++Q CA GEGL EGL+ L I
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 1e-57
Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD +GKTTI+ +LK + PT+GFNVE+ + N+SFT +D+ GQ K R L
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMN 135
W HY++N QG+IFV+DS+DR R+V A+DEL +LN ++ R +L +ANK DLP+A+
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
A +IT L L +++ + W+I ++ A +GEGL EG+DWL
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-46
Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 5 FTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
F + S L KKE +I+ +GLD AGKTT+L+ LK + +PT+ E + N+ F
Sbjct: 6 FYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKF 65
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
T +D+GG ++ R +W+ YF G++F+VD+ D +R E+++EL +LN++EL + +L+
Sbjct: 66 TTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILI 125
Query: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLD 171
NK D P A++ E+ + LGL+ R + +G EG
Sbjct: 126 LGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFR 185
Query: 172 WLSNNI 177
WLS +
Sbjct: 186 WLSQYL 191
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-42
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 16/168 (9%)
Query: 20 ILMVGLDAAGKTTILYKLK-----------LGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
+L++GLD AGKTT L + K +I PT+G N+ T+E WD+
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
GGQ+++R LW Y+ + G+I+V+DS DR+R E++ +++N + L LLV ANKQ
Sbjct: 59 GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118
Query: 129 DLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
DLP+A++ AEI + + + +R +Q A GEG+ EG++WL
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-39
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I +VGL +GKTT++ + G+ TIPT+GFN+ V N++ VWD+GGQ + R +W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
Y + +++VVD+ DR+++ A++ELH +L + L LLV NK DLP A++ E
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+ +++ L S+ R S A + LDWL +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-37
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
IL++GLD AGKT++L+ L E + +PT GFN + ++ + ++GG +R
Sbjct: 2 ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
W+ Y +QGLIFVVDS D +R+ AR ELH++L D L+V ANKQDLP A +
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118
Query: 138 EITDKLGLHSL-RQRHWYIQSTCATS 162
EI +L L + R R W +Q T
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-33
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79
+L VGLD AGKTT++ L+ PT+GF + ++D+GG R +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139
+Y+ GL+FVVDS+D DRV E ++ L +L + +LV ANKQD NA+ A++
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 TDKLGLHSLRQR---HWYIQSTCATSGEG------LYEGLDWL 173
+ L L L +I+ A G G + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-30
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
K +IL +GLD AGKTT+L+ LK + PT E + NI FT +D+GG +
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R LW+ YF G++++VD+ D++R E++ EL +L+++EL L+ NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 135 NAAEITDKLGLHSL---------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ LGL + R ++ S G G EG WLS I
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYG--EGFKWLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-30
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWD 67
KE +I+++G GKTT+L +L E PTIG +NI +WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
GQ++ R L Y++ G++ V DS R+ E +E L E D +L+ NK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 128 QDLPNAMNAAEI 139
DL + +++E
Sbjct: 121 IDLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-19
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVET--VEYKNISFTV--WDVGG 70
E++I++VG GK+T+L +L + I P N T +E ++ D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANKQD 129
Q+ + R Y++ + + V D VE E +++ NK D
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 130 LPNA 133
L +A
Sbjct: 121 LRDA 124
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-17
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 23 VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRP 76
VG GK+++L L GE+ T +V E + + D G D+
Sbjct: 3 VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62
Query: 77 LW-----RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L R + ++ VVDS DR+ +A+ + R L ++ + +++ NK DL
Sbjct: 63 LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKIDLL 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
E+ + + A +GEG+ E + L
Sbjct: 120 EEREVEEL--LRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-15
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV---EYKNISFTVWDVGGQDKIRP 76
+L++G +GKT + KL G++ +T+ +I NV + K T+ DV G +K+R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62
Query: 77 -LWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS + + + + L+ +L + E +L+ NKQDL
Sbjct: 63 KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 133 AMNAAEITDKL 143
A A +I + L
Sbjct: 123 AKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-14
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-------------TIGFNVETV 56
S E +I+++G AGKTT + L +V T T+ + ++
Sbjct: 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI 62
Query: 57 EYKNISFTVWDVG--GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
E V G GQ++ + +W + G I +VDS+ R A +++
Sbjct: 63 ELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS-RPITFHAE----EIIDFL 116
Query: 115 ELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
R+ + ++V NKQDL +A+ +I + L L L + AT GEG + LD L
Sbjct: 117 TSRNPIPVVVAINKQDLFDALPPEKIREALKLELL---SVPVIEIDATEGEGARDQLDVL 173
Query: 174 S 174
Sbjct: 174 L 174
|
Length = 187 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 4e-13
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 18 MRILMVGLDAA-GKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
+I+++G D+ GKT++L + + TIG F +T+E K + +WD GQ
Sbjct: 1 FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y++ G I V D +R+ + + +EL + +++ NK
Sbjct: 60 ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115
Query: 129 DLPN 132
DL +
Sbjct: 116 DLED 119
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-12
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQDK 73
+IL++G GK+++L + + TIG F V+ TV+ K + +WD GQ++
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++ QG+I V D RD D L LNE + DAV ++ NK D
Sbjct: 62 FRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNELDTYSTNPDAVKMLVGNKID 117
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N E+T + G R+ + T A + G+ + + L I
Sbjct: 118 KEN----REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-11
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
+IL++G GK+++L + PTIG + + TV K + T+WD GQ++
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
R L Y++N QG+I V D R+ D + E EL +D V ++ NK D
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK---EVELYSTNQDCVKMLVGNKVD 131
|
Length = 211 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-10
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+++L + + IPTIG F +T+E K + +WD GQ++
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG + V D RD + +E+ R +E + +++ NK DL
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCDL 116
Query: 131 PN 132
+
Sbjct: 117 ED 118
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-10
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+++L + G+ TIG F +T+E K + +WD GQ+
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D +R + + EL + + V+++ NK D
Sbjct: 61 RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116
Query: 130 LPN 132
L
Sbjct: 117 LEE 119
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-09
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNISFTVWDVGGQD 72
+ +++ GL +GKT++ L G + T+ + + + +K SFT+ D G
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60
Query: 73 KIRP--LWRH-YFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDEL-RDAV-LLVFAN 126
K+R L + +G++FVVDS V + + L+ +L+ EL ++ + +L+ N
Sbjct: 61 KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120
Query: 127 KQDLPNAMNAAEITDKL 143
KQ+ A +I L
Sbjct: 121 KQESFTARPPKKIKQAL 137
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G ++K + F ++DVGGQ R W H F++ +IFVV ++ D+V+ D
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+R+ N ++ +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ G+I V D D + + M N DE D ++ NK D+
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIK---NWMRNIDEHASEDVERMLVGNKCDM 120
Query: 131 PN 132
Sbjct: 121 EE 122
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G GK+ +L + + I TIG F + T+E K + +WD GQ++
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D++ V + E+ R +E+ + LLV NK DL
Sbjct: 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119
Query: 131 PNA-----MNAAEITDKLGL 145
+ A E D+LG+
Sbjct: 120 TDKKVVDYTEAKEFADELGI 139
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+++++G GKT+++ + TT + + K I +WD GQ+
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ L Y+++ G I V D D D +V + EL +M + L++ NK D
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKID 116
Query: 130 LPN 132
L
Sbjct: 117 LER 119
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G K + F ++DVGGQ R W H F N +IF V ++ D+V+E +
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
+RM N + +++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-07
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 48 TIG--FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
TIG F +E E + F++ WD GQ++ + + Y++ Q +I V D D +
Sbjct: 32 TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91
Query: 104 RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
R L L E++ +L + K+DL + + ++ + R+ + A +G
Sbjct: 92 RQWLEDALKENDPSSVLLFLVGTKKDLSSP-AQYALMEQDAIKLAREMKAEYWAVSALTG 150
Query: 164 EGLYE 168
E + +
Sbjct: 151 ENVRD 155
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-07
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y + +
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + R+ + ++ + ++
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+ NK DLP + A E+ DK G+ Y + T A +G+ + + ++ L
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIP-------YFE-TSAATGQNVEKAVETL 172
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G KN+ F ++DVGGQ R W H F++ +IFVV ++ D+V+ +
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 106 ELHRML-----------NEDELRDAVLLVFANKQDL 130
++RM + +++L F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIIL-FLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ++
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANKQ 128
R + Y++ G + V D R + D + R L ELRD V+++ NK
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKR----QTFDNVQRWLR--ELRDHADSNIVIMMAGNKS 127
Query: 129 DLPNAMNAAE 138
DL + + AE
Sbjct: 128 DLNHLRSVAE 137
|
Length = 216 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT + Y+ G T TIG F TVE + I +WD GQ++
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63
Query: 74 IR-PLWRHYFQNTQGLIFVVD 93
R + +HY++N ++FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-06
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQD 72
++++VG GKT +L + K G + + I T+G V TV+ + +WD GQ+
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y+++ L+ + D ++ R L +L E D V+++ NK D+
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEIL-EYAQSDVVIMLLGNKADM 118
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIS--FTVWDVGGQDK 73
R+L++G GKT +L + E ++ I TIG F ++T+E I +WD GQ++
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVD 93
+ + + Y++ QG+ V D
Sbjct: 62 YQTITKQYYRRAQGIFLVYD 81
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-06
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I+++G GKT ++ + K G TIG F ++T+E K + +WD GQ++
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
R + + Y+++ G I D R + + + + E E A VLL+ NK DL
Sbjct: 65 FRTITQSYYRSANGAIIAYDITRR----SSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-06
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + G +TTI + F + TVE + + +WD GQ+
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-GVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ R + Y++ T G+I V D + + V + L + + VL+ NK D P
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V +++ I F VWD GQ+K
Sbjct: 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ Q I + D R
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSR 85
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-06
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 49 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
+ F ++TVE K I +WD GQ++ + Y+++ +G+I V D + E D+
Sbjct: 35 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----ETFDD 90
Query: 107 L---HRMLNEDELRDAVLLVFANKQD 129
L +M+++ DA LL+ NK D
Sbjct: 91 LPKWMKMIDKYASEDAELLLVGNKLD 116
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFTV--WDVGGQDK 73
+++ +G GK+ I+ + G V+ +PTIG + V+ V +N V +D+ G +
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDR-------VVEARDELHRMLNEDELRDAVLLVFAN 126
+ ++++TQG++ V D DR + E + E N + + V++V AN
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN---MENIVVVVCAN 118
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQ-STCATSGEGLYEGLDWLSNNI 177
K DL +E +L + + T A +GEG+ E L ++I
Sbjct: 119 KIDLTKHRAVSEDEGRL----WAESKGFKYFETSACTGEGVNEMFQTLFSSI 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 33/169 (19%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET-----VEYKNISFTVWDVG 69
E ++++VG GKT++ +L +GE T G NV+ E K I VWD G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQDKIRPLWRHYFQNTQGLIFVV----DSNDRDRV------VEARDELHRMLNEDELRDA 119
GQ+ + F ++ L +V ++ RV ++A
Sbjct: 60 GQEIYHATHQF-FLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG----------VSP 108
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
V+LV D +I K I +G+G+ E
Sbjct: 109 VILV-GTHID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEYKNISFTVWDVGGQD 72
R++++G GK+++L + G + PT+G + +E I +WD GQ+
Sbjct: 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR-------DRVVEARDEL--HRMLNEDELRDAVLLV 123
+ R + R Y++N+ G++ V D +R D + EAR + HR V ++
Sbjct: 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---------VFIL 114
Query: 124 FANKQDLPN 132
+K DL +
Sbjct: 115 VGHKCDLES 123
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-05
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+++++G + GK++I+ + E TIG F +TV + F +WD GQ++
Sbjct: 3 KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ I V D + +A+ EL + V+ + NK DL
Sbjct: 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118
Query: 131 PN 132
+
Sbjct: 119 ES 120
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 19 RILMVGLDAAGKTT----ILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++GL +GK++ I + + TI V + N++ +WD GQD
Sbjct: 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60
Query: 74 IRPLWRHY-----FQNTQGLIFVVDSNDRD 98
+ F N LI+V D R+
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
++++VG A GKT++LY LGE PT+ N T V+ K + +WD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 72 DKIRPLWRHYFQNTQGLI-FVVDSND 96
+++RPL Y + LI F +D+ D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTPD 86
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 19 RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETV--EYKNISFTVWDVGGQD 72
++L++G + GKT+ L++ V+T+ I F V+TV K I +WD GQ+
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ V+LV NK D+ +
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120
Query: 133 -----AMNAAEITDKLGL 145
A ++ D+LG
Sbjct: 121 ERVVSAERGRQLADQLGF 138
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-05
Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 73
+++++G +GK+++L +L GE T+ + V+ +WD GG+++
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + + ++ V D DR+ V L + +++ NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL--RKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
L Y+ + Q I + D R
Sbjct: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
|
Length = 219 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 69
+I+++G GKT ++ + G P TIG F ++TVE K I +WD
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVD 93
GQ++ R + + Y+++ LI D
Sbjct: 65 GQERFRSITQSYYRSANALILTYD 88
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYKNISFTVWDVGGQDK 73
+ L++G GK+ +L++ + TIG V V K++ +WD GQ++
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLP 131
R + R Y++ G + V D R+ + L R L D V+++ NK+DL
Sbjct: 62 FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP---DIVIILVGNKKDLE 118
Query: 132 NA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
+ + A+ + GL L T A +GE + E
Sbjct: 119 DDREVTFLEASRFAQENGLLFLE--------TSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEYKNISFTV--WDVGGQ---D 72
I++VG A GKT +L + T +PT+ N V + WD GQ D
Sbjct: 3 IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62
Query: 73 KIRPL 77
++RPL
Sbjct: 63 RLRPL 67
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L+ G +GK++I + + + TI + + N + +WD GQD
Sbjct: 1 KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60
Query: 74 IRPL---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR----DAVLLVFAN 126
H FQ LI+V+D +D ++A L + L + DA + V +
Sbjct: 61 FFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKAL--KQAYKVNPDANIEVLIH 116
Query: 127 KQDL 130
K D
Sbjct: 117 KVDG 120
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--- 70
+VGL AGK+T+L + K+ T +P +G V + SF + D+ G
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIE 60
Query: 71 ---QDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLL 122
+ K R L RH + T+ L+ V+D + D VE + + L L + +
Sbjct: 61 GASEGKGLGHRFL-RH-IERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI 118
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
V NK DL +A E +L L L+ + + S A +GEGL E
Sbjct: 119 VVLNKIDLLDAEERFEKLKEL-LKELKGKKVFPIS--ALTGEGLDE 161
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
E ++++VG GKTT + + GE IPT+G V +++ I F VWD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+K L Y+ Q I + D R
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRI 95
|
Length = 215 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (89), Expect = 5e-04
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ +WD GQ++ R L Y +++ I V D +R + +LNE +D +
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
+ + NK DL + ++T + G+ ++ + T A +G +
Sbjct: 88 IALVGNKTDLGDLR---KVTYEEGMQKAQEYNTMFHETSAKAGHNI 130
|
Length = 176 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 6e-04
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--KNISFTVWDVGGQDKIR 75
+++G GK+ +L++ + + P TIG F +E + I +WD GQ++ R
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65
Query: 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R Y++ G + V D R + + + + N + V+ + NK DL
Sbjct: 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADL 119
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 7e-04
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETV--EYKNISFTVWDVGGQD 72
++ L+VG GK IL L+ G + I + T+ + + + +WD GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR------DRVVEARDE 106
+ ++R Y + QG+I V D +R DR ++ DE
Sbjct: 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 8e-04
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 22 MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGG---- 70
+VGL AGK+T+L + K+ T +P +G V + SF V D+ G
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRVDGGE--SFVVADIPGLIEG 220
Query: 71 --QDK---IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEA----RDELHRMLNEDELRDA 119
+ +R L RH + T+ L+ V+D D +E R+EL + +L +
Sbjct: 221 ASEGVGLGLRFL-RH-IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEK 276
Query: 120 VLLVFANKQDLPNAMNAAE 138
+V NK DLP E
Sbjct: 277 PRIVVLNKIDLPLDEEELE 295
|
Length = 369 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 9e-04
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR 75
++++++G GKT++L++ T+ T+G F ++ NIS +WD G+++
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNIS--IWDTAGREQFH 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
L Y + +I D ++ + E D + + D + V NK DL
Sbjct: 59 GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLT-DTANEDCLFAVVGNKLDL 112
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.001
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 23 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIRPL 77
VG GKTT + + GE + T+G V + + I F VWD GQ+K L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 78 WRHYFQNTQGLIFVVDSNDR 97
Y+ Q I + D R
Sbjct: 61 RDGYYIQGQCAIIMFDVTAR 80
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.003
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+++++G A GKT++L G PT+ N V+ + ++WD GQ
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 72 DKIRPLWRHYFQNTQ--GLIFVVDSNDRDRVVEAR 104
D++R L + +T L F VD+ D VE++
Sbjct: 62 DRLRSL---SYADTHVIMLCFSVDNPDSLENVESK 93
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.003
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEY---KNISF 63
++I+++G A+GKT+++ YK +G + F + N++
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG--------LDFFSRRITLPGSLNVTL 52
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVL 121
VWD+GGQ + Y Q + V D + D + + +NE+ +
Sbjct: 53 QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112
Query: 122 LVFANKQDLP 131
++ NK DL
Sbjct: 113 VLVGNKTDLE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.98 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.98 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.98 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.98 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.98 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.98 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.98 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.98 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.98 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.98 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.98 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.95 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.94 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.92 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.92 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.92 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.92 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.92 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.91 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.9 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.89 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.89 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.89 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.87 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.86 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.86 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.86 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.86 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.85 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.85 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.85 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.84 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.84 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.84 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.84 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.84 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.84 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.84 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.83 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.83 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.83 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.83 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.81 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.8 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.8 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.79 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.79 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.78 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.78 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.78 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.78 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.78 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.77 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.77 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.77 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.77 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.76 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.76 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.76 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.75 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.75 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.75 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.75 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.75 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.75 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.75 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.74 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.74 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.74 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.73 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.73 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.73 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.72 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.72 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.72 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.71 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.71 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.7 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.7 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.69 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.69 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.69 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.67 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.67 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.66 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.65 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.65 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.63 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.63 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.62 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.58 | |
| PRK13768 | 253 | GTPase; Provisional | 99.57 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.56 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.56 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.56 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.56 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.55 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.53 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.53 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.52 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.52 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.52 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.49 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.48 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.47 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.47 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.46 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.46 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.46 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.45 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.44 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.43 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.42 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.41 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.4 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.39 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.39 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.38 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.38 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.38 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.37 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.35 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.35 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.34 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.33 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.32 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.31 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.29 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.27 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.26 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.25 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.19 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.18 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.18 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.16 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.16 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.15 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.13 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.11 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.1 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.06 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.03 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.02 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.01 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 99.0 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.0 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.98 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.97 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.97 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.96 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.95 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.94 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.93 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.91 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.91 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.9 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.89 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 98.89 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.86 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.86 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.84 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.83 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.83 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.8 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.77 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.77 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.74 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.73 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.72 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.71 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.7 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.7 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.69 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.69 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.69 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.68 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.67 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.67 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.65 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.62 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.58 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.58 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.57 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.56 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.56 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.55 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.54 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.54 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.52 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.51 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.49 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.49 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.48 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.46 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.45 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.44 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.44 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.41 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.41 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.4 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.38 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.37 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.37 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.34 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.32 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.28 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.27 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.26 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.24 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.24 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.23 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.21 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.2 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.18 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.18 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.18 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.15 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.09 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.0 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.0 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.95 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.94 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.93 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.91 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.91 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.91 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.9 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.9 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.88 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.87 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.84 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.81 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.81 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.81 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.79 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.79 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.76 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.75 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.74 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.72 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.72 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.71 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.7 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.69 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.69 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.67 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.65 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.65 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.64 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.63 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.6 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.59 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.56 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.56 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.55 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.53 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.52 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.51 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.47 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.46 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.46 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.45 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.45 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.44 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.43 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.4 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.38 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.37 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.36 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.35 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.35 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.35 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.34 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.34 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.34 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.33 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.33 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.33 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.33 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.33 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.32 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.32 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.31 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.29 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.28 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.27 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.26 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.26 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.26 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.25 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.23 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.22 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.21 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.2 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.19 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.19 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.19 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.18 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.18 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.18 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.18 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.18 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.17 | |
| PLN02674 | 244 | adenylate kinase | 97.17 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.17 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.17 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.17 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.15 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.15 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.15 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.14 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.13 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.13 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 97.13 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.12 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.12 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.11 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.1 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=228.01 Aligned_cols=181 Identities=100% Similarity=1.472 Sum_probs=162.1
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..++.+.++.+.++.+||+++|++|+|||||++++..+.+....||++.+...++..++.+++||+||+++++..|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88888888777777888999999999999999999999888777788999888888888899999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|+++++++.....++.+++.....+++|+++++||+|+.+....+++.+.+++.....+.+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999988888877655568999999999999888777888888887666666777889999
Q ss_pred cCCCCHHHHHHHHHHHhhccC
Q 030187 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~~ 181 (181)
++|+|++++|++|.+.+.+|+
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999998875
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=223.65 Aligned_cols=180 Identities=78% Similarity=1.281 Sum_probs=160.4
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||+.+.+++++.+.+..+||+++|++|+|||||++++..+.+....||.+.++..++..++.+++||++|+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89889999999888889999999999999999999998887777778888888778888899999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|+++++++.....++.+++......++|+++++||.|+.+....+++...++....+...+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999988888876655567899999999999876666777777777666666778889999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
++|.|++++|++|.+.+.+|
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988765
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=212.92 Aligned_cols=161 Identities=20% Similarity=0.389 Sum_probs=131.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++-|||+++|++|+|||+|+.|+..+.+. .+..|+++++.. ++.+.+++++|||+||++|+.+..+||++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45689999999999999999999999987 567788887643 3345689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceE-EEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 167 (181)
+|||+++.+||+++..|+.++-+... .+.|.++||||+|+.+..... +..+.++ ...+.+ |+|||||++.||+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa----~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFA----DELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHH----HhcCCcceeecccCCccCHH
Confidence 99999999999999999988765543 678999999999997642111 1111121 122334 9999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
+.|..|...+..+
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=211.28 Aligned_cols=170 Identities=87% Similarity=1.374 Sum_probs=147.8
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++..+.+..+||+++|++|+|||||++++..+.+....||++.+...+....+.+++||++|+++++..+..+++++|++
T Consensus 5 ~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 34345566799999999999999999999877776777898888877777889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+|+++++++++...++..++.....+++|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|+++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999999999999988765556799999999999987666677777777666666777888999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
+|++|.+.+.
T Consensus 165 ~~~~l~~~~~ 174 (175)
T smart00177 165 GLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHhc
Confidence 9999988764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=210.85 Aligned_cols=164 Identities=76% Similarity=1.285 Sum_probs=142.6
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.++++.++|+++|++|+|||||++++..+.+....||.+.++..+...++.+++||++|+++++..++.+++++|++++|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 34567799999999999999999999988877777888888777777889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|++++.++.+...++.+.+.....+++|+++|+||+|+.+....+++.+..+........++++++||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999999998888765556799999999999987666677777666555555567899999999999999999
Q ss_pred HHHH
Q 030187 172 WLSN 175 (181)
Q Consensus 172 ~l~~ 175 (181)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=207.80 Aligned_cols=160 Identities=21% Similarity=0.387 Sum_probs=135.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEEEE--Ec--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|..++|||||+-|+..++|... .||++..+.+.. .. .++|.+|||+|+++|..+-++|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999874 889998776533 33 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++.+||..+..|..++.++.. +++-+.++|||+|+.+. ...++. ...++..+..|+|+|||+|.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-----~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-----QAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-----HHHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999999877655 77888999999999872 222222 22233455689999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999988753
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=204.13 Aligned_cols=173 Identities=54% Similarity=1.000 Sum_probs=160.2
Q ss_pred HHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc
Q 030187 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
|+.++++... ++.++|+++|+.||||||+++++..+......||.+.+...+...++.+.+||.+|+..++..|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4567777776 788999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-CcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (181)
++|++|+|+|+++.+.+.+....+.+++......+.|+++++||+|..+....+++...+.+.... .+.+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999998777899999999999999988888898888877775 7789999999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|+|+.|.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=204.76 Aligned_cols=161 Identities=19% Similarity=0.383 Sum_probs=139.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+.+|++++|+.++||||||+|++.+.+. ++.+|+|+++.. +. ...+.+++|||+||++|+.+.++|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 4599999999999999999999999875 678899988743 33 345899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||+++..||+....|+.+........+..+++||||.|+.+. +++..+.+...++..+..|+++||+.|.||+++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999999888777899999999999876 4444444444455556689999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
..|...+..
T Consensus 178 rrIaa~l~~ 186 (221)
T KOG0094|consen 178 RRIAAALPG 186 (221)
T ss_pred HHHHHhccC
Confidence 998877654
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=200.70 Aligned_cols=180 Identities=83% Similarity=1.313 Sum_probs=174.2
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..+++++...+.+...+|+++|.-++||||++++|..+++.+..||++++...+.+++++|++||.+|+++++..|+.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+++.+++|+|+|.++++.+.+....+..++........|+++++||.|++..-...++.+.+++..+..+++.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|+|+.|.++++.+.+.++
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=203.54 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|++|+|||||++++..+.+....||++.+...+....+.+.+||++|++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888877778888888777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+++.....++.+++......++|+++++||+|+.+....+++...++...+....+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999999988877655567899999999999766555666666666555566778899999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=199.24 Aligned_cols=171 Identities=54% Similarity=0.983 Sum_probs=146.5
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
+..+.+....+..++|+++|++|+|||||++++..+.+....||++.++..+...++.+.+||+||++++...+..++++
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 34455545445679999999999999999999998888777888888888888888999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|+++++++.....++.+++......++|+++++||+|+......+++.+.++....+..+++++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999999888888888776555679999999999997765666777777765555567789999999999
Q ss_pred CHHHHHHHHHH
Q 030187 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~v~~~~~~l~~ 175 (181)
|++++|++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=197.09 Aligned_cols=161 Identities=62% Similarity=1.073 Sum_probs=137.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++|+|||||++++.+..+....||++.....++..++.+++||+||+.+++..+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777788888888778888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++.+...|+.+++......+.|+++++||+|+.+....+++......... ....+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987655567899999999999766555655554433221 22345788999999999999999999877
Q ss_pred hc
Q 030187 178 AN 179 (181)
Q Consensus 178 ~~ 179 (181)
..
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=203.15 Aligned_cols=164 Identities=23% Similarity=0.406 Sum_probs=135.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.-...+||+++|++++|||+++.++..+.+. ...+|+++.+.. +.. ..+.+++|||+||++|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 3456789999999999999999999999876 556688877643 333 45889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||+++..||+++..|+..+ .....+..|.++||||+|+... +++..+.+...+...++.|+||||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999966554 5555578999999999998763 3333333434444456789999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
|+|..|.+.+.+|
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988755
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=198.34 Aligned_cols=164 Identities=49% Similarity=0.899 Sum_probs=139.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.++...++|+++|++|+|||||++++.+..+....+|++.....+..+++.+.+||+||++.++..+..+++++|++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 34556799999999999999999999988776777888877777777889999999999999998899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....++..++......++|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 99999999999988888887655556899999999999987656566666665544445678899999999999999999
Q ss_pred HHHH
Q 030187 172 WLSN 175 (181)
Q Consensus 172 ~l~~ 175 (181)
++.+
T Consensus 169 ~l~~ 172 (173)
T cd04154 169 WLVD 172 (173)
T ss_pred HHhc
Confidence 9864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=186.14 Aligned_cols=175 Identities=45% Similarity=0.828 Sum_probs=163.2
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
+-+.+...+++.++|+++|+.||||||++++|.+.......||.+++..+...+.+.+++||.+|+...++.|+.|+...
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 44555566788999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (181)
|++|+|+|++++.++++....+.+.+......+.|++++.||.|+..+...+++...+++..+ +..+++.+.||+.+|+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999999999999999998877788999999999999988888999999988877 8889999999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
++.+.++||.+.+++|
T Consensus 165 ~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMSR 180 (185)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988765
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=196.73 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=136.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+.|+|||+|+.++..+.|.. ...|+++.+ ..++.+.+++++|||+|++.|++....||+.+-++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 46899999999999999999999998764 345777665 3455677999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++++++|..+..|+.++.+.. .++..+++++||+|+... +++.++.+..++++.+..|+++||+++.||+|+|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 999999999999999999987764 378999999999998764 3444444444444455678999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
..+...|.++
T Consensus 161 ~nta~~Iy~~ 170 (216)
T KOG0098|consen 161 INTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHH
Confidence 9999888765
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=191.51 Aligned_cols=161 Identities=24% Similarity=0.401 Sum_probs=140.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCc-cceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+-++..+.+....|+ +++++ ..++...+++-+|||+|+++|+.+.++|++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 458999999999999999999999998877664 77665 3455567899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++.+++|..+..|..++-.....+++..++|+||+|..+ .+.+.++.++..++...+-|+|+||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999988876666667888999999999543 35667777777787788899999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+.++++|.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999998864
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=202.61 Aligned_cols=158 Identities=19% Similarity=0.365 Sum_probs=123.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+.|+++|+.|+|||||++++..+.+.. ..+|++..+. .+..+ .+.+++||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999988764 4567665543 34444 488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|+++++||+.+..|+..+ .+...++.|+++|+||+|+...... .+....+... ..++.|++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998877654 4434467999999999998643211 1111111110 1235799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=195.02 Aligned_cols=173 Identities=35% Similarity=0.602 Sum_probs=146.4
Q ss_pred HHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc
Q 030187 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
|.++++-... ++.++|+++|++|+|||||++++.++.+....||.+.....+..+++++.+||+||+.+++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 4566663322 778999999999999999999999987766677777777777778899999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-------CcceEEE
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQ 156 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 156 (181)
++|++++|+|+++++++.....++.+++......++|+++++||+|+......+++.+.+++.... .+...++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999999999998888888776555689999999999998777777888777655422 2466799
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q 030187 157 STCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+|||++|.|+++++++|.+++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EeecccCCChHHHHHHHHhhC
Confidence 999999999999999998753
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=191.44 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=133.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++++|||||++++..+.+....||++.+...++..++.+++||+||+++++..+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887777778888877777788899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++.....++...++.....++|+++++||+|+.+.....++...++.......+.+++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887788877766555567999999999999766555666666655444455678999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=201.98 Aligned_cols=163 Identities=21% Similarity=0.300 Sum_probs=124.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..+||+++|++|+|||||++++..+.+. ...||++..+. .++...+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999998874 55778765543 2333458899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHh--------hhCCCcccCcc-eEEEEeccc
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITD--------KLGLHSLRQRH-WYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (181)
||+++++||+.+...|.+.+... .++.|+++|+||+|+.+.... +.+.. +.+...++..+ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999986444433332 257999999999999653211 11111 01111112223 579999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.||+++|+++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987764
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=202.58 Aligned_cols=160 Identities=18% Similarity=0.303 Sum_probs=129.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|.+|+|||||++++..+.+....+|++..+.......+.+.+||++|++++...+..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877766666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHh---HHHhhhCCC------c
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------------MNAA---EITDKLGLH------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------------------~~~~---~~~~~~~~~------~ 147 (181)
++|+.+..||..+... ..++.|+++|+||+|+.+. ...+ .+.+..... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999999887654 3357899999999998651 0111 111111100 0
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.....++|+||||++|.||+++|..+++.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011257999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=198.02 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=125.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|.+|+|||||++++..+.+. ...||.+..+. .+.. ..+.+++||++|+++++.++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999998876 45667664443 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++|+.+..|+..+......+++|+++|+||+|+.+..... ...+....+..+++|++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~---~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT---TEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC---HHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 999999999998876555443333679999999999986532111 11111112234568999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|++.+.++
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99887754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=199.93 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=124.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|+.|+|||||++++..+.+.. ..++++..+ ..+..+ .+.+++||++|+++|+.++..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999887653 334555443 233333 4889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+.++.... ++.|+++|+||+|+.+. ...++.. .+. +..+++|++|||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-~~a----~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-AYA----ERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-HHH----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999998888875542 68999999999998652 2222221 111 23445799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+..
T Consensus 158 ~F~~l~~~i~~ 168 (189)
T cd04121 158 SFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987763
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=190.05 Aligned_cols=157 Identities=50% Similarity=0.856 Sum_probs=130.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
+|+++|++|+|||||++++.+.. .....||++.....+...++.+++||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999874 2356788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
+.++.....++..+..... ..++|+++++||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888877766432 25799999999999987655556665555443344456799999999999999999987
Q ss_pred H
Q 030187 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=198.45 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=124.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||++++..+.+. ...||++..+. .+. ...+.+++|||+|+++|..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45689999999999999999999998875 45677765442 222 345889999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEec
Q 030187 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
|||+++++||+++ ..|+..+.. .. ++.|+++|+||+|+.+... ...+....+...++..++ +|+|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~-~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQE-FC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-HC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 455555433 22 5799999999999854210 001111122222233443 799999
Q ss_pred ccCCCC-HHHHHHHHHHHhhcc
Q 030187 160 ATSGEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~-v~~~~~~l~~~l~~~ 180 (181)
|++|.| |+++|..+++...+|
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~~ 182 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVNK 182 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC
Confidence 999998 999999999876543
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=176.34 Aligned_cols=180 Identities=70% Similarity=1.199 Sum_probs=172.9
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||-.+++++.+.+..+.++|+.+|..++||||++.+|.-++.....||++++..++.++++.|++||.+|+.+.+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+....++|+|+|+++++..++.+..+..++.+......|+++..||.|++.+-..+++.+.+++..++.+.+.+.++||
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999998899999999999999999999999999999989999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|+|+.|-|.+|.+.+..|
T Consensus 161 ~~gdgL~eglswlsnn~~~k 180 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKEK 180 (180)
T ss_pred ccchhHHHHHHHHHhhccCC
Confidence 99999999999999877653
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=192.67 Aligned_cols=172 Identities=35% Similarity=0.628 Sum_probs=143.1
Q ss_pred HHHHHhhh-ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 6 TKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 6 ~~~~~~~~-~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
.+.++... ..+.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+||+||+++++..+..++++
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPE 86 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcc
Confidence 34444433 35679999999999999999999998887777778887777788888999999999999999888999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------cCcce
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHW 153 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~ 153 (181)
+|++++|+|+++.+++.....++.+++......+.|+++++||+|+......+++...+..... ....+
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeE
Confidence 9999999999999999988899988887665567999999999999876666777666653221 22456
Q ss_pred EEEEecccCCCCHHHHHHHHHHHh
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.+++|||++|.|++++|++|.+.+
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhhC
Confidence 799999999999999999998754
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=192.47 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||+.++..+.+. ...||++..+. .+. ...+++++|||+|+++|+.+++.+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999886 46777765442 222 245899999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcccCcce-EEEEecccCCC
Q 030187 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (181)
+++++||+.+. .|+..+... . ++.|+++||||+|+.+... ...+..+.+...++..+. +|+||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHY-A-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999984 666665433 2 5799999999999864310 001111111112222344 69999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 030187 165 GLYEGLDWLSNNIAN 179 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~ 179 (181)
||+++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987653
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=188.87 Aligned_cols=157 Identities=36% Similarity=0.620 Sum_probs=135.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+|+++|++|+|||||++++.+.......||++.....+...++.+++||+||+++++..+..+++++|++++|+|+++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 58999999999999999999875456678888887778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc---cCcceEEEEecccCC------CCHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RQRHWYIQSTCATSG------EGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~~ 169 (181)
+++....++..+.......++|+++|+||+|+.+.....++.+.+..... ....+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 99999999998887655568999999999999887766777776665543 234578889999998 899999
Q ss_pred HHHHHH
Q 030187 170 LDWLSN 175 (181)
Q Consensus 170 ~~~l~~ 175 (181)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=188.97 Aligned_cols=155 Identities=40% Similarity=0.682 Sum_probs=132.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
.|+++|++|+|||||++++.++.+. ...||.+.....+...++++.+||++|+++++..+..+++++|++++|+|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 4899999999999999999987654 456788887777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccC------CCCHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL 170 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~~~ 170 (181)
.++.....|+.++.... +++|+++|+||+|+.......++...++.... +..++++++|||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999998888876543 68999999999999876666666555544433 45678899999998 99999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
+.+++
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98875
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=195.38 Aligned_cols=161 Identities=20% Similarity=0.412 Sum_probs=127.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE------------cCEEEEEEEcCCCCCccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
..+||+++|++|+|||||++++..+.+.. ..+|++.++.. +.. ..+.+.+||++|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999887653 45666654432 221 2478999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||++++++|..+..|+..+......+++|+++|+||+|+.+.. ..++. ..+. +..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 999999999999999999999999988887665445678999999999986532 22222 1111 1123579999
Q ss_pred cccCCCCHHHHHHHHHHHhhccC
Q 030187 159 CATSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~~~ 181 (181)
||++|.|++++|+.|.+.+.+++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~~ 180 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKRI 180 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999888764
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=192.65 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=121.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++||+++|++|+|||||++++..+.+. ...||++..+. .+. ...+++++|||+|++++..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999998875 45667655442 222 34588999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEeccc
Q 030187 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCAT 161 (181)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (181)
|+++++||+.+ ..|+..+... . ++.|+++|+||+|+.+... ...+..+.+...++..++ +|+||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999997 5565554432 2 5789999999999854200 001111112222223443 79999999
Q ss_pred CCCC-HHHHHHHHHHHhhc
Q 030187 162 SGEG-LYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~-v~~~~~~l~~~l~~ 179 (181)
+|.| |+++|..+++...+
T Consensus 159 ~~~~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 159 TSEKSVRDIFHVATMACLN 177 (178)
T ss_pred cCCcCHHHHHHHHHHHHhc
Confidence 9995 99999999986554
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=188.51 Aligned_cols=158 Identities=16% Similarity=0.298 Sum_probs=130.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++.-+||+++|++|+|||||+|++...+|. ....|++..+.+ ++...+.+++|||+|+++|+++.-.+++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 455689999999999999999999999886 456688876643 333458899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCC-------CHhHHHhhhCCCcccCcceEEEEe
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
++|||+.+++||+.+..|-.+++.+... ..-|+|++|||+|+.... ....++.. ..++||||+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s-------~gnipyfEt 158 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS-------KGNIPYFET 158 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh-------cCCceeEEe
Confidence 9999999999999999999999987543 346999999999986521 12223322 346799999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|||...||+++|+.+.+...
T Consensus 159 SAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 99999999999999987654
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=190.78 Aligned_cols=164 Identities=50% Similarity=0.880 Sum_probs=132.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE-----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++....+....||.+........ ..+.+.+|||+|++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999988877667777665544332 45899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|+|+++++++.....++.++.......+.|+++++||+|+......+++......... ...+++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999899888888877766544467999999999998765444555444443222 223467889999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=192.42 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+. ...||++..+. .+..+ .+++++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999998874 56677765543 33333 3889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-H--------HhhhCCCcccCcc-eEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-I--------TDKLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (181)
++++++|+.+..+|...+.... ++.|+++|+||+|+.+.....+ + ..+.+....+..+ +.|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999864444444322 5799999999999865421111 0 0000001111223 57999999999
Q ss_pred CCHHHHHHHHHHH
Q 030187 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~v~~~~~~l~~~ 176 (181)
.|++++|+.+++.
T Consensus 161 ~~v~~~f~~~~~~ 173 (175)
T cd01874 161 KGLKNVFDEAILA 173 (175)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999875
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=195.66 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=127.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||++++.++.+. ...||.+..+. .++...+.+++|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999988765 44566655443 233345788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+......++.|+++++||+|+.+.. ...+... . .+..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988887765545688999999999986432 2112111 1 112235799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=185.15 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=138.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++|+|||||++++.+.......+|.+.....+....+.+.+||+||++.+...+..+++.+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777788888888888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++.....++..+.......+.|+++++||+|+......+++.+.++........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877665578999999999999877666677776665544556778999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=190.62 Aligned_cols=157 Identities=20% Similarity=0.354 Sum_probs=124.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++..+.+... .+|++..+. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999998887543 446665543 2333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|+.+..|+..+... ..++.|+++|+||+|+.... ..++... + ++..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999988776443 23578999999999986542 2222221 1 1223458999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988765
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=185.20 Aligned_cols=157 Identities=49% Similarity=0.918 Sum_probs=131.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+|+++|++|+|||||++++.++.+....||.+.....+.. ..+.+.+||++|+.++...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888776665554 358999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.++.....++.+++......+.|+++++||+|+......+++...+..... ...++++++|||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 899999998888877655568999999999999766555666655543322 235678999999999999999999865
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=199.52 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=122.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EE--EcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..+||+++|++|+|||||++++..+.+. ...||++..+.. +. ...+.+++|||+|+++|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4589999999999999999999988876 456777655432 22 2458899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEecc
Q 030187 92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (181)
||++++++|+.. ..|+..+.... ++.|+++|+||+|+..... ...+....+...++..++ .|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56665554322 5789999999999864210 011111122222233445 6899999
Q ss_pred cCCC-CHHHHHHHHHHHhhc
Q 030187 161 TSGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~-~v~~~~~~l~~~l~~ 179 (181)
++|. ||+++|..+++.+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999987654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=189.16 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+.. ..||.+.. ...+..+ .+.+++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999887653 34555422 2223333 4778899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++++....|+..+......++.|+++++||+|+.+.... .+....+. +..+.+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888776555568999999999998653211 11111111 112357999999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=179.72 Aligned_cols=161 Identities=20% Similarity=0.400 Sum_probs=130.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--E-EE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V-EY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~-~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+..+|||||+.++.+..+. ....|+++.+.. + .. +.+++++|||+|+++++.+.-.+++.++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 3469999999999999999999998875 345677776432 2 22 34899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||+++.+||..+..|..++.. ..+.+.|+|+++||||+.++ +-+..+.+...+++.++.|||+|||.+.||+++|
T Consensus 100 myDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 9999999999999998877644 46689999999999998764 2222222333333445569999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.++..|-++
T Consensus 176 e~lv~~Ic~k 185 (193)
T KOG0093|consen 176 ERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=184.64 Aligned_cols=165 Identities=50% Similarity=0.843 Sum_probs=141.8
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.....+.++|+++|++|+|||||++++.+..+....+|.+.+...+...+..+.+||++|+.++...+..+++++|++++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 33445689999999999999999999999877777788888777777888999999999999988888888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++..++.....++..........++|+++++||+|+.+....+++.+.++........++++++||++|+|++++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 99999988898888888887776555679999999999998776677777777766555566778899999999999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
++|.+
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=188.98 Aligned_cols=161 Identities=20% Similarity=0.373 Sum_probs=133.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-|||+++|++++|||-|+.|+..++|. +..+|+++.+.+ ++.+.++.++|||+||++|+++.+.|++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 4589999999999999999999999986 667798888765 33456899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++...+|+++..|+.++..+ ..+++++++||||+|+.+. +.+..+.+...++..+..|+++||.++.||+++|
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999988887555 4479999999999999763 2222222222333344579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.++..|.++
T Consensus 169 ~~~l~~I~~~ 178 (222)
T KOG0087|consen 169 ERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHH
Confidence 9999887754
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=189.14 Aligned_cols=157 Identities=21% Similarity=0.303 Sum_probs=124.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++..+.+.. ..+|++..+. .+.. ..+.+++|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3799999999999999999999877643 4456554332 2333 3577889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++|+.+..|+..+......++.|+++++||+|+..... .++. ..+. +..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887765557899999999999875321 1111 1111 1123579999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998775
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=190.50 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE---cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||+++|.++.+. ...+|++.++. .+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999988765 35677775543 3333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcc-eEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (181)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+ ....+++.+.... .+ ..++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-----NGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-----cCCceEEEEeCCCCCC
Confidence 99999999999988877664321 236789999999999963 2233333222111 12 3689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|++.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=194.09 Aligned_cols=159 Identities=23% Similarity=0.349 Sum_probs=128.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...+|++..+..... ..+.+.+||++|++++..++..+++++|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3467799999999999999999999888775 457788776554332 35899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|+|||++++++|+.+..|+..+.... ++.|+++|+||+|+..... .+++ .+ .+..++.|++|||++|.|+
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCH
Confidence 999999999999999998887775432 5799999999999864322 2222 11 1224567999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 161 ~~~f~~l~~~~~~ 173 (219)
T PLN03071 161 EKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988753
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=184.15 Aligned_cols=155 Identities=22% Similarity=0.381 Sum_probs=124.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+. ...+|.+........ ..+.+.+||++|++++...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999977754 456777766544332 3588999999999999998899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++++.+..|+..+.... .++|+++|+||+|+.......+..+ + .+...++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888776543 2799999999999874432222211 1 1234567999999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=187.15 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=123.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+.. ..||++.++. .+..+ .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988764 6778876653 34444 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|++++++|+.+..|+..+..... ...| ++|+||+|+.... ..+.+. .......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887755422 3567 6789999985321 111111 1111112233467999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=177.68 Aligned_cols=162 Identities=23% Similarity=0.355 Sum_probs=131.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+|++++|+.|+|||+|++++..+++.+. ..|+++.+.. ++ .+.+++++|||+|+++|++....|++.|-+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 448999999999999999999999988644 4477776532 33 356999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++++++|+.+..|+.+.-. ...+++-+++++||.|+... .++.-..+..+.+.....+.++||++|+||+|+|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 9999999999999999987533 34478889999999998765 3333333333334445578999999999999999
Q ss_pred HHHHHHhhccC
Q 030187 171 DWLSNNIANKA 181 (181)
Q Consensus 171 ~~l~~~l~~~~ 181 (181)
-...+.|..||
T Consensus 164 l~c~~tIl~kI 174 (214)
T KOG0086|consen 164 LKCARTILNKI 174 (214)
T ss_pred HHHHHHHHHHH
Confidence 99988887664
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=186.29 Aligned_cols=157 Identities=20% Similarity=0.391 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++++.. ..+|.+.++. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999988753 4566665443 2322 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++.+..|+..+... .....|+++++||+|+.+... .++..+ +. +..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQ-LA----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHH-HH----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999998887776443 335789999999999865422 222211 11 1223478999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+++.+.+.+|
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999988765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=186.39 Aligned_cols=157 Identities=25% Similarity=0.430 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...+|++..+. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998865 45567665543 3333 4588999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++... .. ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WA----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HH----HHcCCeEEEEECCCCCCH
Confidence 99999999999888887766543 257899999999998632 12222211 11 112357899999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=182.51 Aligned_cols=157 Identities=38% Similarity=0.730 Sum_probs=130.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+|+++|++|+|||||++++.... .....+|++.+...+..++..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 68999999999999999997532 12346677777777888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--ccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....++..+.......+.|+++++||+|+.......++...+.... ....+++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888999888888888766557899999999999987665555555444321 2335678999999999999999
Q ss_pred HHHHHH
Q 030187 170 LDWLSN 175 (181)
Q Consensus 170 ~~~l~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=191.65 Aligned_cols=163 Identities=16% Similarity=0.225 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+|+|++|+|||||++++..+.+. ...||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999998876 46677765553 2333 4588999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCcccCcc-eEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
|++++++|+.+..+|...+... .++.|+++|+||+|+.+... ... +..+.+...++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999977666555433 36799999999999865311 011 11111212222334 3799999999
Q ss_pred CCC-HHHHHHHHHHHhhcc
Q 030187 163 GEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 163 ~~~-v~~~~~~l~~~l~~~ 180 (181)
+.+ |+++|..++.+...|
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 885 999999998866543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=183.20 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=122.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++.++.+. ...+|.+..+. .+.. ..+.+.+||++|+++++.++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988764 34455553332 2223 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|+.+..|+..+.+.....+.|+++|+||+|+.+... ..+..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887655556899999999999876332 22221111 11234789999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
+|.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=185.63 Aligned_cols=159 Identities=22% Similarity=0.380 Sum_probs=125.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++.+..+.. ..+|.+..+. .+... .+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999888654 4666665442 33333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+... ...+.|+++++||+|+.+.. ..++..... +..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999887776553 33678999999999997532 222222211 12345789999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++.+.+.+|
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999988754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=183.54 Aligned_cols=154 Identities=21% Similarity=0.385 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++|+++|++|+|||||++++..+.+.. ..+|++.++. .+... .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999988753 4677775543 34443 478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+. +..+.+|+++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999888766543 2357899999999998653211 11122121 12235789999999999999999
Q ss_pred HHHHH
Q 030187 172 WLSNN 176 (181)
Q Consensus 172 ~l~~~ 176 (181)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=184.75 Aligned_cols=157 Identities=17% Similarity=0.288 Sum_probs=121.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-eeEEEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++..+.+... .+|.+ .....+.. ..+.+++||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999887543 44443 11222333 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|..+..|+..+.......++|+++++||+|+....... .....+. +..+.+++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988887765544689999999999986432111 1111111 11234789999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=189.32 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE-E--EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.||+++|++|+|||||++++..+.+.. ..||.+..+.. + +...+.+++||++|++++..++..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999988764 45666554432 2 2234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCCcccCc-ceEEEEecccC
Q 030187 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT---------DKLGLHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~Sa~~ 162 (181)
++++++|+.+.. |+..+. .. .++.|+++|+||+|+.+.....+.. ...+...++.. .++|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~-~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIR-EH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHH-Hh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998875 544443 32 2579999999999997643222111 11111111112 25799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++++|++|++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=192.13 Aligned_cols=159 Identities=24% Similarity=0.491 Sum_probs=126.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE---cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++..+.+.. ..+|++.++.. +.. ..+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999888754 35676655433 322 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+........+|+++|+||+|+..... .++. ..+. +..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999988877654445688999999999865321 1221 1111 12335799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+.|.+.+.++
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999877643
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=184.83 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++.+..+.. ..+|....+ .... ...+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887653 334443222 1222 234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
++++++++.+..|+..+.......+.|+++++||+|+.... ..+...... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988877665555678999999999986532 222221111 11235799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
+|++.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987754
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=184.46 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=117.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||+.++..+.+. ...||++..+. .+.. ..+++.+|||+|++++...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999988775 44566543321 2222 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcccCcc-eEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
|++++++|+++...|...+.... ++.|+++|+||+|+.+... .+.+... .+....+..+ .+|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999764444443332 5799999999999864311 1111110 0000111122 4799999999
Q ss_pred CCCHHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~v~~~~~~l~~~ 176 (181)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999875
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=184.97 Aligned_cols=156 Identities=24% Similarity=0.336 Sum_probs=123.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++..+.+. ...||++..+. .+.. ..+.+++||++|++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998875 45677766553 2333 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++.....|+.++.+......+|+++|+||+|+.+.... ++..... ....+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998888766544446789999999998643221 1111111 11223478999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
+.|.+.+.
T Consensus 158 ~~l~~~~~ 165 (170)
T cd04108 158 FRVAALTF 165 (170)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=171.58 Aligned_cols=171 Identities=33% Similarity=0.651 Sum_probs=158.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
++.+..+ +....+.++|..++|||||+|.+..+++. ...||.+++...+..+.+.+.+||.||+++|+..|..|++.+
T Consensus 11 wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 11 WICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 3344444 45599999999999999999999987765 568999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++||+|+++++.++.....+++++....+.++|++++|||.|++.+.....+...+++.....+.+..|.+|+++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
++.+.+||+++-.
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075|consen 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=184.67 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-E--EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++.+..+.. ..+|....+. . ++...+.+++||+||++++...+..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999877543 3445443322 2 2223478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++..+..|+..+.......+.|+++++||+|+..... .++. ..+. +..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QELA----RKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHHH----HHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988877654456889999999999875421 1221 1111 1223478999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
++|++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=190.84 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=123.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE---cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||+++|.++.+. ...||.+.++.. +.. ..+.+++||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988775 456777765532 333 248899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
||++++++|+.+..|+..+..... ..++|+++|+||+|+.+... ..+....+. +..+++++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~----~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA----QANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999888777655432 24578999999999864321 111111111 12235788999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=189.34 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=120.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||+++|..+.+.. ..+|.+..+. .+.. ..+.+++|||+|++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999887753 4555553322 2222 346799999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++|..+..|+..+..... ..+.|+++|+||+|+..... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877654322 35789999999999864322 1111 111 12234579999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+++++.+.+
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987764
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=183.40 Aligned_cols=158 Identities=21% Similarity=0.398 Sum_probs=123.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.++.+. ...+|.+..+ ..+... .+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999988765 3345655443 233333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|..+..|+..+.... .++.|+++++||+|+..... .++... +. +..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999887765432 35789999999999865422 222221 11 123457999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|+.|.+.+.++
T Consensus 156 ~~~i~~~~~~~ 166 (166)
T cd01869 156 FMTMAREIKKR 166 (166)
T ss_pred HHHHHHHHHhC
Confidence 99999987653
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=175.54 Aligned_cols=158 Identities=22% Similarity=0.360 Sum_probs=130.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EE--EEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+++|+.|+|||+|+.++..+-++ ....|+++.++ ++ +.+++++++|||+|+++|+++..+|++.|+++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 379999999999999999999888765 56678887764 33 34679999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||++...+|..+.+|+.++..... .+.--|+|+||.|+.+. .++-...+....+.....|.++||++-+||+.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999988766533 46777999999998875 33434444444444566789999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
.+.-.|.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876654
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=185.99 Aligned_cols=158 Identities=23% Similarity=0.379 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988764 5667665442 2333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999877765432 246899999999998743211 11111111 12244799999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999987754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=175.07 Aligned_cols=157 Identities=36% Similarity=0.680 Sum_probs=133.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
.|+++|++|+|||||++++.+..+. ...||.+.....+..+.+.+.+||+||+++++..+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3799999999999999999998765 456788887777777789999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+++.....++..+.......++|+++++||+|+.+.....++............+++++++|+++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 899888888888877655568899999999998876555556555555544455678999999999999999999865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=185.86 Aligned_cols=157 Identities=22% Similarity=0.406 Sum_probs=124.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...+|++..+ ..+... .+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999988765 3566776554 334333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+.... ...|+++|+||+|+..... .++... +. ...+++++++||++|.|+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999998887765432 5789999999999875422 122221 11 12235799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=178.90 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=113.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-CccceeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+||+++|++|+|||||++++..+.+.... |+.+.....+..++ +.+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999888765543 33332223344444 7899999999975 3456889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEEEEecccCCCCHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
++++||+++..|+.++......+++|+++|+||+|+.... .+.+....+....+. .++.|++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766555678999999999974311 011111111111111 24689999999999999999999
Q ss_pred HHHh
Q 030187 174 SNNI 177 (181)
Q Consensus 174 ~~~l 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=180.74 Aligned_cols=155 Identities=15% Similarity=0.220 Sum_probs=117.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++.++.+. ...||.+..+.. .....+.+.+||++|++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999988865 334555533322 22245789999999999999988889999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++..+..|+..+... ...++.|+++|+||+|+...... .+....+ ....++.++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 99999999998887655332 12357899999999998652211 1111111 11234578999999999999999
Q ss_pred HHHHHH
Q 030187 171 DWLSNN 176 (181)
Q Consensus 171 ~~l~~~ 176 (181)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999853
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=185.70 Aligned_cols=157 Identities=19% Similarity=0.428 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||++++..+.+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988864 345666555432 333 347899999999999999889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++++..|+..+... ...++|+++++||+|+.... ..++.. .+. ...+.+|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998887666543 33478999999999986421 222221 111 122357999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|++|.+.+.++
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=178.66 Aligned_cols=159 Identities=14% Similarity=0.301 Sum_probs=123.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEE--EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++..+.+.. ..++++.... .+. ...+.+++||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456899999999999999999999887653 4556665542 232 34578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|||++++++++.+..|...+..... ..+.|+++++||+|+.... ..+++.+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888877665322 2568999999999986432 22332221111 1113689999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|+.+++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=180.88 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE---cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+++|||+|++++...++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999988875 34456554432 2222 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcccCcce-EEEEecccCCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (181)
|++++++|+.+...|....... .++.|+++|+||+|+.... ...+..+ + ....+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCC
Confidence 9999999999976443333322 2578999999999986532 1111111 1 111222 689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.+++.+.+
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987764
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=179.25 Aligned_cols=155 Identities=21% Similarity=0.378 Sum_probs=122.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.+..+. ...||.+.++. .+... .+.+++||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988765 44566665443 33333 36899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++.+..|+..+.... ..++|+++|+||.|+.... ..++...... ..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999998887765543 2468999999999986532 2222222211 12457999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=176.30 Aligned_cols=157 Identities=22% Similarity=0.382 Sum_probs=120.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee--EEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++..+.+.. ..+|.+.. ...+...+ +.+++||+||++++...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999887654 34455433 33444444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+... ...++|+++|+||+|+.+.. ..++... +... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~---~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACT-LAEK---NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHH-HHHH---cCCcEEEEEECCCCCCHHH
Confidence 99999999999998888777553 23578999999999987542 1122111 1110 0113688999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=182.77 Aligned_cols=150 Identities=23% Similarity=0.328 Sum_probs=121.2
Q ss_pred EcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE----EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 23 ~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+|++|+|||||++++..+.+. ...+|++.++.... ...+++.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988775 45778877665433 2458999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++|..+..|+.++.+.. +++|+++|+||+|+.......+.. ...+..++.|++|||++|.||+++|++|++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988777775532 579999999999986432211111 11223457899999999999999999999887
Q ss_pred hc
Q 030187 178 AN 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 64
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=180.59 Aligned_cols=157 Identities=21% Similarity=0.399 Sum_probs=122.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCcc-ccccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++..+.+. ...++.+..+. .+... .+.+++||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999988765 34556654432 33333 4789999999999887 467888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccC---CCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 166 (181)
|||++++++++.+..|...+.......++|+++|+||+|+...... .+....+. +..+++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998877766555567999999999998653221 12222222 12235799999999 9999
Q ss_pred HHHHHHHHHHh
Q 030187 167 YEGLDWLSNNI 177 (181)
Q Consensus 167 ~~~~~~l~~~l 177 (181)
+++|..+++.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=186.73 Aligned_cols=159 Identities=20% Similarity=0.355 Sum_probs=126.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+++|.+..+. ...+|++.++. .+... .+.+++||++|++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 5589999999999999999999988765 45677776553 34333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+....+. ...+++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887766543 3357999999999998653221 12222222 123468999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+.+.+.+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=179.30 Aligned_cols=152 Identities=18% Similarity=0.347 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+||+++|++|+|||||++++.++.+. ...+|++.++.. +.. ..+++++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999988765 345676665532 222 35889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+... ..+.|+++|+||+|+..... .++..... +..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 99999999999998887776432 25799999999999865322 22221111 11234789999999999999
Q ss_pred HHHHHHHH
Q 030187 169 GLDWLSNN 176 (181)
Q Consensus 169 ~~~~l~~~ 176 (181)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999765
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=175.36 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=122.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++.+||+++|++|+|||||++++.++.+. ...||.+..+. .+.. ..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999998875 45677765432 3333 337889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++|+|++++++++.+..|+..+... .++|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999999888877654322 479999999999986432 223333333321 3578999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++|+.|.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=175.14 Aligned_cols=154 Identities=16% Similarity=0.268 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+.. ..++.+..... ++...+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887653 33444443322 2234578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++.+++....|+..+... .++.|+++++||+|+..... .+. ..+ .+..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~~-~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSVT-QKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhHH-HHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999988887776443 24789999999999853211 111 111 1122457899999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
+.+.+.+
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=178.22 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=119.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+. ...++.+..+. .+.. ..+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999988764 34455554433 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++..+..|+..+... ..++.|+++++||.|+.... ..++...... ..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998887765433 33689999999999986532 2222222111 123579999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=178.83 Aligned_cols=157 Identities=19% Similarity=0.321 Sum_probs=123.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++....+... .++.+.+. ..+.. ..+.+.+||++|++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998876533 34544433 22333 347899999999999999989999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++.+..|+.++.... .++.|+++++||.|+.... ..++..... ...+.+++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887765543 3679999999999987432 222222211 123457999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=175.36 Aligned_cols=162 Identities=22% Similarity=0.418 Sum_probs=134.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+++++++|++-+|||||++.+..+++.+ ..||++++++. ++ ...+++++|||+|+++|+++..+|++|.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 56899999999999999999999999874 57888887642 11 23589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||.++.+||+-+..|..+.......+.+ -+.+||+|+|+... .++..+.+...+...++.|+||||++|.||+|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999998777665554 46889999999754 44444444444455667899999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
.|.-|.+.+..+
T Consensus 164 AF~mlaqeIf~~ 175 (213)
T KOG0091|consen 164 AFDMLAQEIFQA 175 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999988877643
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=185.72 Aligned_cols=161 Identities=23% Similarity=0.407 Sum_probs=125.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....+||+++|++|+|||||+++|.+..+....++.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34568999999999999999999999887777777766543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|||++++++|..+..+|...+.. ....+.|+++|+||+|+...... ++.. .+ ....+++|+++||++|.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM-AL----AKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HH----HHHcCCEEEEEeCCCCCCH
Confidence 999999999999998866655443 22356799999999998653221 2111 11 1123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987753
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=183.34 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=112.1
Q ss_pred cceEEEEcCCCCChHHHHh-hhhcCCc------ccccCccce-eEE------------EEEEcCEEEEEEEcCCCCCccc
Q 030187 17 EMRILMVGLDAAGKTTILY-KLKLGEI------VTTIPTIGF-NVE------------TVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~-~l~~~~~------~~~~~t~~~-~~~------------~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
.+||+++|++|+|||||+. ++.++.+ ....||++. ..+ .++...+.+++|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 5554432 234677742 211 23334689999999999752
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEI 139 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------------~~~~ 139 (181)
....+++++|++++|||+++++||+.+.. |+..+ .... ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI-RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH-HHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999975 55444 3322 5789999999999864210 1122
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
....+...++..+++|+||||++|.||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222223334455689999999999999999999874
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=178.57 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+.. ..+|....+ ..+... .+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888753 344443222 223333 4668899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCcc-eEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~Sa~~~ 163 (181)
++++++|+.....|.+.+... .++.|+++++||+|+.+......... ..+....+..+ .+|++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999976555555443 46899999999999865422111110 00001111122 26899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=179.61 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=123.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++.++.+. ...+|.+.+... +.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998865 455676665543 333 35789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++||..+..|+..+..... ...|+++++||.|+.+ ....++..+.. +..+.+|+++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988777655543 5689999999999876 22222221111 11224799999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=178.82 Aligned_cols=157 Identities=18% Similarity=0.274 Sum_probs=122.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.++|+++|++|+|||||++++.++.+. ...+|.+..+. .+.. ..+.+++||+||++++..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 378999999999999999999988865 34556554332 2223 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcc-eEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~ 169 (181)
|++++++++....|...+.......+.|+++++||.|+..... .++.. .+. +..+ .+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~----~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLS----QQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHH----HHcCCceEEEeeCCCCCCHHHH
Confidence 9999999999998877776544446899999999999865321 11111 111 1122 57999999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+++++.+.
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998654
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=177.87 Aligned_cols=155 Identities=20% Similarity=0.408 Sum_probs=123.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988765 566666433 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....|+..+..... +..|+++++||+|+.... ..++...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999998888766543 679999999999987421 2222222111 12257999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
+++|++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=173.42 Aligned_cols=155 Identities=25% Similarity=0.446 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++.+.++.. +.. ..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999887653 55666654432 333 3478999999999999998899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++++....|+..+.......+.|+++++||+|+.... ..++... +. ...+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998887776665555789999999999997433 2222221 21 12345799999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=172.52 Aligned_cols=156 Identities=21% Similarity=0.358 Sum_probs=126.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++.+|+|++|+|||+|+.++..+.|.. +..|+++++. +++ ++.+++++||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 578899999999999999999887763 4557776543 333 45699999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|+++.+||.+...|+.++-.+. +..|-++||||.|.++.-.. ..+.+..++.+.++.+||+||+.++|++..|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV---~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVV---DTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceee---ehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999886554 47899999999999875211 111122223345567999999999999999998
Q ss_pred HHHHhh
Q 030187 173 LSNNIA 178 (181)
Q Consensus 173 l~~~l~ 178 (181)
|.+++.
T Consensus 164 it~qvl 169 (198)
T KOG0079|consen 164 ITKQVL 169 (198)
T ss_pred HHHHHH
Confidence 887654
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=179.97 Aligned_cols=155 Identities=16% Similarity=0.292 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||++++..+.+.. ..+|++..+. .+... .+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988753 5667765442 23333 47788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||++++++++....|+..+... .++.|+++|+||+|+..... .++..+ + ....+.+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence 9999999999988877666443 24789999999999864321 111111 1 112345788999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.|.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=183.49 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc-eeEEEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+. ...+|++ .....+.. ..+.+++|||+|++.|...+..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999988876 4456664 22223333 34789999999999999888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++++++|+.+..|+.++.... ...++|+++++||+|+.. ....+++.+..... .++.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 999999999998888876531 235789999999999874 23334444333221 2457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++|++|....
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=175.46 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=116.2
Q ss_pred EEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
|+++|++|+|||||++++.++.+.. ..++....+. .+.. ..+.+.+|||+|++++...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988753 3444443332 2222 3468999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHH--------HhhhCCCcccCcc-eEEEEecccCCCC
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEI--------TDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (181)
++++|+.+...|...+.... ++.|+++|+||+|+...... +.+ .........+..+ ..++++||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999999764444443322 58999999999998653210 000 0000001111223 2789999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=175.63 Aligned_cols=157 Identities=21% Similarity=0.455 Sum_probs=123.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+..+ ..+...+ +.+++||+||++++...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988764 3345555443 2344433 78999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++.+..|+..+..... +++|+++++||+|+.... ..+...+ +. +..+++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999887777655433 589999999999987532 2222222 21 1234579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
|
Rab GTPases are implicated in vesicle trafficking. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=184.05 Aligned_cols=159 Identities=19% Similarity=0.317 Sum_probs=124.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++....+.. ..+|++.++. .+.. ..+.+.+||++|++++...+..+++++|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887643 4556665542 2333 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+.... .++.|+++++||+|+.+.. ..++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877664432 3579999999999987532 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++++.+.++
T Consensus 159 ~f~~l~~~~~~~ 170 (210)
T PLN03108 159 AFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=177.49 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=117.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCcccc--------ccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~--------~~~~~~~ 84 (181)
+||+++|++|+|||||++++.++.+.. ..||.+.... .+... .+.+++|||||...+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999888753 4566553332 23333 378899999997654322 2244789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+|++++|||++++++|+.+..|+..+.... ..+++|+++|+||+|+.... ...+....+.. +..+++|++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCC
Confidence 999999999999999999998888776643 24679999999999996532 11111111110 1234679999999
Q ss_pred CCCCHHHHHHHHHHHhhcc
Q 030187 162 SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~~ 180 (181)
+|.|++++|+.+++.+..+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877643
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=175.02 Aligned_cols=154 Identities=20% Similarity=0.371 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+.++. .+..+ .+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988765 34555554443 33333 367999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++|+.+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988887765433 369999999999995432 2222222111 223578999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=176.72 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+|++++|++|+|||||++++..+.+.. ..+|. .... .+.. ..+.+++||+||++++...++.+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999998877654 33443 2221 2222 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (181)
|++++++|+.+...|...+... .++.|+++++||+|+..... ...+.........+..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999999865444433332 24789999999999864321 000111001111112233 799999999
Q ss_pred CCCHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSN 175 (181)
Q Consensus 163 ~~~v~~~~~~l~~ 175 (181)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=174.55 Aligned_cols=158 Identities=14% Similarity=0.200 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE-E--EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+||+++|++|+|||||++++..+.+....++..... . .+....+++++||++|++++...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988765444322111 1 2233568899999999998888777788999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++.+..+|.+.++... .+.|+++|+||+|+.+.... +++...... .. ....++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hh-cccEEEEeccccccCHHHHH
Confidence 999999998776666555433 47999999999999765432 111111000 00 01268899999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=176.89 Aligned_cols=161 Identities=21% Similarity=0.429 Sum_probs=133.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE-----------cCEEEEEEEcCCCCCcccccccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY-----------KNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
+|.+.+|++|+||||++.++..+++.. -.+|+++++.. +-+ ..+.+++|||+|+++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 578899999999999999999998764 45677776532 211 2378999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.|-+++++||+++..||-+...|+.++..+...+++-+++++||+|+.+. ..+.+......+..+++||||+||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999988888889999999999998764 223222333333456668999999999
Q ss_pred CCHHHHHHHHHHHhhccC
Q 030187 164 EGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~~ 181 (181)
.||++..+.|...+++|+
T Consensus 167 ~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRI 184 (219)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999888763
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=173.98 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccceeEEE--EE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+||+++|++|+|||||++++..+ .+. ...+|.+.++.. +. ...+++.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 343 455666655432 22 23489999999999999998999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ....+. ...+++++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888877665432 5689999999999865432111 111111 11235789999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=171.98 Aligned_cols=159 Identities=15% Similarity=0.268 Sum_probs=121.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...+|++.++. .+.. ..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988754 23345554432 2333 3477889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
|++++++++....|...++.... ..++|+++|+||+|+..+ ...++........ ...+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999999888877666554432 347899999999999742 2233322221111 12478999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++++++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=170.62 Aligned_cols=158 Identities=19% Similarity=0.334 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++....+.. ..++....+.. .+...+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999877643 33343332222 22245789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++++.....|+..+.......++|+++|+||+|+... ....+... +. ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999988887655568999999999998762 12222111 11 11234789999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
.+.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (164)
T cd04139 156 DLVREIRQR 164 (164)
T ss_pred HHHHHHHhC
Confidence 999887653
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=180.58 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=115.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--eeEEEEEE--cCEEEEEEEcCCCCCcccccccccc-CccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~il 90 (181)
+||+++|++|+|||||++++..+.+. ...++.+ .....+.. ....+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877763 4445543 33333333 457899999999982 23344556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|.....|+..+.......++|+++|+||+|+..... .++. ..+ ....+++++++||++|.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999998887776654446899999999999865421 1111 111 112345789999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
+|+++++.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=174.57 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=114.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE---EEEEEcCEEEEEEEcCCCCC-ccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++..+.+.. ..++....+ ..++...+.+++||+||+++ +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999877643 344442222 22333456899999999986 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCC-CHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~ 169 (181)
++++++|+.+..|+..+..... ..++|+++|+||+|+.... ..++..+ + .+..+.+|+++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-L----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-H----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999887766655332 3579999999999985432 2222111 1 11123479999999994 99999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=163.17 Aligned_cols=180 Identities=56% Similarity=0.943 Sum_probs=168.2
Q ss_pred CcchHHHHHHhhhcc-CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
||..++-++...+.. +..+|+++|.-|+||||+..++.-++..+..||++++..++..++.++++||.+|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 666777888887777 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.|+.+.|++|+|+|.+|.+........+..++++...++..++++.||.|........++...+++..++.+-+.+|++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999999999999999998888889999999999998888889999999998988899999999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|.+|+|+++.++||.+.+..|
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988764
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-30 Score=168.67 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=128.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccce----eEEEEEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~----~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.-.||++++|...+|||||+-+++.++|... .+|+.. ....+.....++.+|||+|+++|..+-+-||+..+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 44569999999999999999999999887632 222222 2223334567899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
++|||+++++||+.+..|..++-.-.. ..+-+++|+||+|+... ..+....+...++..+..|+++||+++.||.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999887644322 45778999999998643 34444444445556667799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|+.|...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99998876654
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=170.33 Aligned_cols=160 Identities=18% Similarity=0.296 Sum_probs=117.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
..||+++|++|+|||||++++..+.+.. ..||.+..+ ..+.. ..+.+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988753 455655433 22333 3478899999999999998888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcccCc-ceEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~Sa~~ 162 (181)
|++++++|+.+...|...+... .++.|+++++||+|+....... ++..... ....+.. ..++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998876555444432 2578999999999986532211 1110000 0000111 23789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|.|++++|++|.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998753
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=169.42 Aligned_cols=154 Identities=21% Similarity=0.362 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++....+.. ..++..... ..+.. ..+.+.+||++|++.+...++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887653 233333322 22332 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++....|+.++..... .++|+++++||+|+.... ..+++.+.. ...+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999887776655433 378999999999987532 222222211 1224568899999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=170.99 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=116.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-E--EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||+++|.+..+. ...++...... . .....+.+++||+||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988863 33444332222 1 22235789999999999998888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcccCcce-EEEEecccCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (181)
+++++++......|...+.... .+.|+++|+||+|+........ +............+. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888876666555433 4799999999999876543211 111111111112223 79999999999
Q ss_pred CHHHHHHHHHH
Q 030187 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~v~~~~~~l~~ 175 (181)
|+++++++|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=171.69 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-eeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||++++..+.+... .+|.. .....+...+ +.+++||++|+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998876543 33432 2333344444 7899999999999998888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++++....|+..+.......++|+++++||+|+..... .....+.... ..+.+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 99999999998888877765556899999999999865311 1122111111 1234688999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-31 Score=166.86 Aligned_cols=150 Identities=19% Similarity=0.430 Sum_probs=123.7
Q ss_pred EEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 21 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 21 ~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+++|++++|||+|+-++..+.+. .-.+|+++++.. +...++++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999999887765 345688877643 334568999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
++..||++.+.|+.++.+... ....+.+++||+|+..+ ++.+.+.++++ +||+++||++|.||+..
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHC--------CCceeccccccccHhHH
Confidence 999999999999988765422 45778999999999652 33444555444 46999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=163.70 Aligned_cols=152 Identities=23% Similarity=0.431 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEEE--EE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+... .+|.+.++... .. ..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887654 56666655433 33 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++.....|+..+..... ...|+++++||+|+. .....+++.+... ..+.+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99999999999987776665432 579999999999996 2223333333222 134679999999999999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 98863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=170.39 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=123.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.||+++|++|+|||||++++.+..+.. ..||.... ...+... .+.+++||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887653 44554432 2233333 4678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++.++++.+..++..+++.....+.|+++++||+|+.... ...+... +. +..+.+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887655678999999999986432 2112111 11 11234789999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=165.27 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=119.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++..+.+. ...+|++... ..+...+ +.+.+||++|++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999876654 3455555433 2344443 778999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|||+++++++..+..|+..+... ...+.|+++++||+|+.+... ..+..+.+.. ....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHHH
Confidence 99999999998888776654332 224789999999999865322 1222222221 12247899999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=166.82 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=114.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+.||+++|++|+|||||++++..+.+.. ..+|....+. .+.. ..+.+.+||++|++.+....+.+++++|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3689999999999999999998766543 3344433322 2222 3467899999999998887777889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-------hHHHhhhCCCcccCcc-eEEEEecccCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRH-WYIQSTCATSGE 164 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (181)
|++++++|+.+...|.+.+.... ++.|+++|+||+|+.+.... ..+.........+..+ .+|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999999865555444332 46999999999998542110 0000000001111122 268999999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|++++|+.+.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=165.03 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=119.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||++++.+..+.. ..++.... ...+... .+.+++||+||+..+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999998876543 33343322 2223333 47899999999999999889999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++.....++..+.........|+++++||+|+.... ..++...... ..+.+++++||+++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776554689999999999987632 2222222111 12257899999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98754
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=167.30 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=126.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...+|++..+..... +.+.+++||++|++++...+..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999988777654 556777776654432 45899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||+++..+|..+..|+..+.... ++.|+++++||+|+.+.....+... ..+..++.++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999998887765432 5789999999999865432222111 112234578999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-28 Score=153.82 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=128.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+|-+++|+-|+|||+|++++...++... ..|+++.+ ..+...++++++|||+|+++|+....++++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 457999999999999999999999887643 44666554 4456678999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|++.+.++..+..|+.+.-. ...++..+++++||.|+... .++..+.....++..+..|.++||++|.||++.|
T Consensus 90 vyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 9999999999999998887543 44478899999999998653 2222222222333455679999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
-...+++..
T Consensus 166 le~akkiyq 174 (215)
T KOG0097|consen 166 LETAKKIYQ 174 (215)
T ss_pred HHHHHHHHH
Confidence 988888764
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=166.53 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=131.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|.+|+|||+|..++..+.+.. +.||++..+. .++.....+.++||+|++++..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999998874 5778775443 2333458899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|+++++.||+.+..++..+.+.......|+++||||+|+... ..+..+.+...+...+++|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666677899999999999863 12222222222445566799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
.|.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=161.73 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=96.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE-------cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++|+|||||++++..+.+. ...+|++.++. .+.. ..+.+++||++|++++...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999998875 35567764432 2222 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~ 133 (181)
+|+|||+++++||+++..|+.++.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 1246899999999998653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-27 Score=157.42 Aligned_cols=177 Identities=38% Similarity=0.721 Sum_probs=155.4
Q ss_pred chHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC--------cccccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 3 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.....+++-.+++..+.++++|+-++|||||+..+.... ...-.+|++.+..++......+.+||.+|++..
T Consensus 3 tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 3 TLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHH
Confidence 345678888999999999999999999999998875332 235567999999999988999999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcccCcce
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRHW 153 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (181)
+++|..||..||++++++|+++++.|+.....+..+..+-...+.|+++..||.|+.+.....++...++. .....+..
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccC
Confidence 99999999999999999999999999999999999988888889999999999999998888888777763 22344677
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++.++||.+|.||+|...|++..+.+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhh
Confidence 89999999999999999999998865
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=155.24 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEEEEEEcCEEEEEEEcCCCCCccc---------cccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~ 85 (181)
.+|+++|++|+|||||+++|.+..+.. ..+|.+.....+..+++.+++|||||+..... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 379999999999999999999887532 12345555555556678999999999743110 011111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|+|+++..++ .....|+..+... . .+.|+++++||+|+.......+. ..+. +...++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~-~~~pvilv~NK~Dl~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL-F-KNKPVIVVLNKIDLLTFEDLSEI-EEEE----ELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh-c-CcCCeEEEEEccccCchhhHHHH-HHhh----hhccCceEEEEeccc
Confidence 899999999877653 5555555554332 1 47899999999999765333321 1111 223457899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++++++.+.|
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=156.44 Aligned_cols=156 Identities=26% Similarity=0.251 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCE-EEEEEEcCCCCC----cccccccc---ccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|++|+|||||+|+|.+.... . ..+|.......+...+. .+.+|||||..+ .+.....+ +.++|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876531 1 12233434444555554 899999999642 22222333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++ ++++....|...+.... ...++|+++|+||+|+.+.....+........ ..+.+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999988 78888877766654432 12478999999999987654433332222111 0234688999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=147.18 Aligned_cols=164 Identities=47% Similarity=0.804 Sum_probs=152.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcC-EEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.++.++|+++|..++|||||+.+|.+.......||.+++...+..++ +.+++||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 37789999999999999999999999999999999999999998865 99999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|.++...|++....+.+++........|+.+..||.|+......+++...+.+..++.+-+++.+|||.+++|+..-.++
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999999888889999999999999988888999999999988888999999999999999988888
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
+....
T Consensus 174 v~sn~ 178 (185)
T KOG0074|consen 174 VQSNP 178 (185)
T ss_pred hhcCC
Confidence 76644
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=156.06 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--c-----c-cccC------ccceeE----EEE-----EEcCEEEEEEEcCCCCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--I-----V-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~-----~-~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~ 75 (181)
+|+++|++++|||||+++|.+.. + . ...+ +.+... ..+ +..++.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998632 1 0 1111 112221 122 2356889999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+++....++. ... .++|+++++||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999988766666555443 222 46899999999998653221 2333333221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..++++||++|.|+++++++|.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 248899999999999999999987643
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=156.52 Aligned_cols=163 Identities=17% Similarity=0.250 Sum_probs=124.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE-EEEE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+++||+..+|||+|+..+..+.+. .+.||+--++ ..+. ...+++.+|||+|+++|..+++..++++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999888876 4566655333 2233 44589999999999999999988999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhh--------hCCCcccCcc-eEEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDK--------LGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 159 (181)
+||++.+++||+++...|...+.+.. ++.|+++||+|.|+.+.... +.+.+. .+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999999987777666655 89999999999999853211 111110 0000111112 4799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++..|++++|+..+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999998887654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=151.67 Aligned_cols=151 Identities=23% Similarity=0.155 Sum_probs=102.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---ccc---ccCccceeEEEEEEc-CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.|+++|++|+|||||+++|.+.. +.. ...|++..+..+... +..+++|||||++++......+++++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 211 123555555555554 67899999999999877777778899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+++... ......+. .+... ...|+++++||+|+...... +++.+.+.... ..+.+++++||++|.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCHH
Confidence 99976211 11111111 11111 12489999999999754211 22222222111 124579999999999999
Q ss_pred HHHHHHHH
Q 030187 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~l~~ 175 (181)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=155.77 Aligned_cols=153 Identities=21% Similarity=0.225 Sum_probs=108.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcC-EEEEEEEcCCCCCc---------ccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI---------RPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~---------~~~~~~~ 81 (181)
+..++|+++|++|+|||||+|++.+.... ...+|.......+...+ ..+.+|||||..+. ...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 45689999999999999999999987632 12344454444555544 48999999997332 1111 23
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+.++|++++|+|++++.++.....+. +.+......++|+++|+||+|+....... .. ....+.+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56899999999999888776654433 33333333578999999999987643222 11 11234468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030187 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l 177 (181)
++.|+++++++|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=150.12 Aligned_cols=155 Identities=22% Similarity=0.186 Sum_probs=108.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEc---CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.|+++|++|+|||||+++|....+... ..|.......+..+ +..+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876542 23333333444443 678999999999999888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCc--ccCcceEEEEecccCCCCHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHS--LRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+++....+.. ..+.. +.. .+.|+++|+||+|+...... .+....+.... .....++++++||++|.|+++
T Consensus 82 d~~~~~~~~~~-~~~~~-~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQTI-EAIKL-AKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHHH-HHHHH-HHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 99875322221 11211 222 46899999999998754211 11111121111 112356799999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
++++|.+...
T Consensus 157 l~~~l~~~~~ 166 (168)
T cd01887 157 LLEAILLLAE 166 (168)
T ss_pred HHHHHHHhhh
Confidence 9999987643
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=143.78 Aligned_cols=153 Identities=22% Similarity=0.296 Sum_probs=112.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEcC--EEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++....+. ...++....... +...+ +.+.+||+||+.++...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999988743 333444444433 45555 7899999999999999988889999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|.... .++.... .+...+..... .+.|+++++||+|+............+.... ..+++++||++|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----GEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhcc----CCceEEeecCCCCCHHHH
Confidence 998766 6666665 33333333222 2789999999999976543333333333221 235899999999999999
Q ss_pred HHHHH
Q 030187 170 LDWLS 174 (181)
Q Consensus 170 ~~~l~ 174 (181)
++.|-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=160.84 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=108.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCC-ccccc-------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~~~ 82 (181)
.+..+|+++|.+|+|||||+|+|.+..+... .+|.......+..++.++.+|||||..+ +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4667999999999999999999998876432 2343444445666778999999999853 22221 1236
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.++|++++|+|..+ ++.....++.+.+.. .+.|.++|+||+|+.+. ...++.+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455555555554443 24567789999998654 233333333211 1124689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|+++++++|.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987653
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=157.05 Aligned_cols=159 Identities=23% Similarity=0.323 Sum_probs=102.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCC-----------CCCccccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~ 82 (181)
...++|+++|++|+|||||+|++.+..+.. ..++.......+... .+.+||||| +++++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999876532 233333322333333 689999999 455655555554
Q ss_pred c----CccEEEEEEECCCcccHH---------HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030187 83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH- 146 (181)
Q Consensus 83 ~----~~d~~ilv~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~- 146 (181)
. .++++++|+|.++...+. .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 357888888876432210 011112222222 478999999999986543 233444444431
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+.+++++||++| |+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11112236889999999 999999999998764
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=146.92 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=92.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCC-----CccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||+|++.+..+. ..+|.+..+ .. .+|||||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999987652 334433322 22 689999973 2333333 4789999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++.++... .|.+.. ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~--~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP--GFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh--hHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 9998887542 233321 23899999999986532 222222111111 0126889999999999999998
Q ss_pred HH
Q 030187 173 LS 174 (181)
Q Consensus 173 l~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=147.10 Aligned_cols=156 Identities=23% Similarity=0.210 Sum_probs=113.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-------------------cCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
+|+++|.+|+|||||+|.+.+...... ..+.......+......+.+||+||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999987654321 1233334445566678999999999999988888
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL------- 148 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 148 (181)
.+++.+|++++|+|+.++.+.... ..+.. +.. .+.|+++++||+|+....... ++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~-~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRI-ARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHH-HHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 889999999999999866543322 22222 222 578999999999998643322 23333332211
Q ss_pred --cCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+++++||++|.|+++++++|.+.+..
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999988753
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=160.87 Aligned_cols=157 Identities=24% Similarity=0.204 Sum_probs=112.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEE-cCEEEEEEEcCCCCCc----ccc---ccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEY-KNISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d 86 (181)
..|+++|.||||||||++++...+.. . ...|.......+.. +..++.+||+||.-+. ..+ +..++.+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999875422 1 12355555555666 4578999999996421 122 334556799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEecccCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+.....+ ..+... ...+.+++++||+++.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 9999999998888888887777665432 234789999999999875432221 111111 1123568899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|+++++++|.+.+.
T Consensus 315 GI~eL~~~L~~~l~ 328 (335)
T PRK12299 315 GLDELLRALWELLE 328 (335)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=141.37 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=106.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+|||||..++... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987642 2222 333334455566789999999998665432 22456789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|++++.+......+.. ..+.|+++++||+|+...... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998777766554332 257899999999998765332 1122345789999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=157.52 Aligned_cols=122 Identities=21% Similarity=0.380 Sum_probs=101.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE---------------cCEEEEEEEcCCCCC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~D~~G~~~ 73 (181)
......+||+++|+.|+|||||++++..+.+. ...+|++.++. .+.. ..+.+++||++|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 44567799999999999999999999988775 34678776542 2332 247899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~ 133 (181)
|+.++..++++++++|+|||++++++|+.+..|+..+..... ..++|+++|+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999888765421 135899999999998653
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=149.57 Aligned_cols=145 Identities=22% Similarity=0.239 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CCcccc-----------------cCccceeEEEEEEcCEEEEEEEcCCCCCccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL--GEIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 78 (181)
-+|+++|++++|||||+++|.. +.+... ..+.......+..++..+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 333221 112223334566778999999999999999999
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-CC-cccCcce
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLG-LH-SLRQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~-~~-~~~~~~~ 153 (181)
..+++++|++++|+|+++. .+.....++..... .++|+++++||+|+...... +++...+. .. .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 9999999999999999863 22333333333322 46889999999998653221 22222221 11 1123467
Q ss_pred EEEEecccCCCCHH
Q 030187 154 YIQSTCATSGEGLY 167 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~ 167 (181)
+++++||++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 89999999997763
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=165.08 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=108.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCC----------ccccc-cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPLW-RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+...+..+.+|||||..+ +.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999987642 2222 33333345566777889999999532 22221 24
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999888877664 3333332 57899999999999754322222222111111112346889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988664
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=143.81 Aligned_cols=149 Identities=28% Similarity=0.449 Sum_probs=113.7
Q ss_pred EEcCCCCChHHHHhhhhcCCc-c-cccCccceeEEEEEEc----CEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 22 MVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
++|++|+|||||++++.+... . ...+|. ......... ...+.+||+||+..+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 2 333343 444444433 678999999999988888888889999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH--hhhCCCcccCcceEEEEecccCCCCHHHHHHHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT--DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
++.++.....++..........+.|+++++||+|+.......... .... .....+++++|+.++.|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHHHHHHH
Confidence 998888888874444444455789999999999998765443321 1111 1234579999999999999999988
Q ss_pred HH
Q 030187 174 SN 175 (181)
Q Consensus 174 ~~ 175 (181)
.+
T Consensus 156 ~~ 157 (157)
T cd00882 156 AE 157 (157)
T ss_pred hC
Confidence 63
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=147.60 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=106.3
Q ss_pred EEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEc-CEEEEEEEcCCCCC----cccc---ccccccCccEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~il 90 (181)
++|++|+|||||+|+|.+.... . ..+|.......+... +..+.+||+||..+ .+.. +...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999987631 1 123444444455566 78999999999632 2222 2345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|++++ .++.....+..++..... ..+.|+++|+||+|+.......... ........+.+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 467777666666654322 1478999999999997654333321 001111233468899
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 030187 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l 177 (181)
||+++.|++++++++.+.+
T Consensus 158 Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 158 SAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ehhhhcCHHHHHHHHHhhC
Confidence 9999999999999987653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-24 Score=151.09 Aligned_cols=163 Identities=29% Similarity=0.392 Sum_probs=121.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEE--c--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+++|.++.+.. ..+|+...+..... . .+++.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999998764 44565544433222 2 5789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhh----------CCCccc-CcceEEEEe
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKL----------GLHSLR-QRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~ 158 (181)
|+|.++..++.+....|.+.+........|+++++||+|+........ +...+ ...... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998777777776666665654445799999999999987532111 11110 000000 112238899
Q ss_pred ccc--CCCCHHHHHHHHHHHhh
Q 030187 159 CAT--SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~--~~~~v~~~~~~l~~~l~ 178 (181)
|++ .+.++.+++..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999988775
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=141.70 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=101.2
Q ss_pred EEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc--------cccccccCccEE
Q 030187 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (181)
Q Consensus 21 ~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~~ 88 (181)
+++|++|+|||||+++|.+.... ...+ |...........+..+.+|||||...+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2222 33344445666778999999999987654 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
++|+|+.+..+... .++.+.+.. .+.|+++++||+|+............++. .+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 99999976543332 223333333 35899999999999765332111111111 1478999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
++++|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-24 Score=147.89 Aligned_cols=156 Identities=21% Similarity=0.123 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC----Ccc------cccCccceeEEEEEEc--------------CEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG----EIV------TTIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 73 (181)
++|+++|++++|||||+++|... .+. ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111 1223555444444333 67899999999976
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH--S 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~--~ 147 (181)
+........+.+|++++|+|+++....+....+. .... .+.|+++++||+|+...... +++.+.+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444556789999999998654333322222 1111 25699999999998754322 2222221100 0
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
....+++++++||++|.|+++++++|.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123567999999999999999999998775
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=164.17 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=106.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCc----cceeEEEEEEcCEEEEEEEcCCCCC--------cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT----IGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+|+|||||+|+|.+.......++ .......+...+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347999999999999999999998764322222 2233344556678899999999763 2333456788
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|+++..++.. ..+.+.+.. .++|+++|+||+|+..... +........ . + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999987765532 233344433 5799999999999865321 111111111 1 1 2358999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999987754
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=158.15 Aligned_cols=151 Identities=22% Similarity=0.224 Sum_probs=108.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEE-cCEEEEEEEcCCCCC---------ccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|+|.+.... ...+|.+.....+.. .+..+.+|||+|..+ |...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987642 124566666666666 467999999999722 22222 246
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.++|++++|+|++++.+......+ .+++......+.|+++|+||+|+..... +..... ...+++.+||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEEEccC
Confidence 889999999999988877665433 3344433335789999999999875322 211111 012478999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|.|++++++.|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=159.69 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=109.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
+..++|+++|+||+|||||+|+|.+... ....| |.......+..++..+++|||||..++... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999998753 23333 333334456677889999999998765432 23577
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++.. |+..... .+.|+++|+||+|+... ..+.+.+ ..+.+++++||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988877654 5444322 46899999999998654 2222211 1233578999998
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999998887754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=152.99 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=102.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEE-EEEcCEEEEEEEcCCCCCccc--------cccccccCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 86 (181)
+|+++|.||+|||||+|+|.+...... ..|....... ....+..+.+|||||...... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999875422 2232222222 233557899999999754321 1234578999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-CCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..........+. .... .+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCCCCC
Confidence 999999998776654 333333333 4689999999999874322222222221 1111 1688999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++++.|.+.+..
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987653
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=155.99 Aligned_cols=156 Identities=24% Similarity=0.241 Sum_probs=110.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCCCCcc----cc---ccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQDKIR----PL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----~~---~~~~~~~~d 86 (181)
..|+++|.|++|||||++++...+.. . ..+|...+...+...+ ..+++||+||..+.. .+ +..++.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999876521 1 1234445555566665 899999999975322 22 233345799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 87 GLIFVVDSNDR---DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. ++++....|..++.... ...++|+++|+||+|+......+++.+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 67777776665554332 2357899999999999765433333333321 1234688999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=161.19 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=109.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++|+++|.+|+|||||+|+|.+... ....+ |.+.....+...+..+.+|||||..++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999998763 22222 444455566677889999999998765432 23467
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++.... |.. ..+.|+++|+||+|+....... ...+.+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877765433 322 2578999999999987542221 11234688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=140.68 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=102.0
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-ccc--CccceeEEEEEEcCEEEEEEEcCCCCCcccc------ccccc--cCccEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~il 90 (181)
++|++|+|||||++++.+.... ... .|.......+...+..+.+|||||+..+... +..++ .++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999887532 222 2455555566677789999999998876642 34455 48999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+.+++... .++..+.. .++|+++++||+|+.+..........+. ...+.+++++||.+|.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998754432 33333332 3689999999999976532221111111 1123468999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
+.+.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99987643
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-24 Score=146.83 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=101.9
Q ss_pred cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030187 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
...||++..+.. +. ...+.+.+|||+|+++++..+..+++++|++|+|||++++++|+.+..|+..+.... .+..
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 456788876643 23 245899999999999999999999999999999999999999999998888876653 2578
Q ss_pred eEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 120 piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
|+++|+||+|+.+. ...++.... ....+..|+++||++|.||+++|++|++.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999998642 222222111 12234568999999999999999999988754
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=146.92 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=115.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCc-cEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~ilv~d 93 (181)
+|+++|++|+|||||+++|..+.+....++...+...+.. .+..+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988776555544443333332 367899999999999999888899998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 030187 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------ 145 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (181)
+++. +++.....++.+++... ..+++|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67788777777765432 225799999999999876433222111110 0
Q ss_pred --------Ccc--cCcceEEEEecccCCC-CHHHHHHHHHH
Q 030187 146 --------HSL--RQRHWYIQSTCATSGE-GLYEGLDWLSN 175 (181)
Q Consensus 146 --------~~~--~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 175 (181)
..+ ...++.+.++|++.+. |+++..+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 1245779999998876 69998888764
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-26 Score=150.62 Aligned_cols=154 Identities=18% Similarity=0.340 Sum_probs=128.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE----EEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+.++||||++++++.+-|+ ++..|++.++. .+...++...+||++|+++|..+...|++.|.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 5689999999999999999999988876 44557776553 344466888999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||+-+|+.||+....|+..+.... ..+|.++|-||+|+.+.. ..+-..+.+.. .++.+|++...|
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~--------RlyRtSvked~N 168 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK--------RLYRTSVKEDFN 168 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh--------hhhhhhhhhhhh
Confidence 999999999999999999987654 479999999999997642 22333333333 477899999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
|..+|.+|++++.+
T Consensus 169 V~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 169 VMHVFAYLAEKLTQ 182 (246)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998754
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=138.05 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=103.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-----------cccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~ 81 (181)
.++|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+||+||..+.... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999887532 1112 222222344556678999999997543211 1234
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++.+|++++|+|+.++.+..... .+.. ... .+.|+++++||+|+.+. .....+..............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~-~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGL-ILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHH-HHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 57899999999998876655432 2222 222 36899999999998765 23333233222111111235799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030187 160 ATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~ 176 (181)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=158.46 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=109.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCCCccccc-----------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ... .|.......+...+..+.+|||||..+..... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987632 222 23333334455567789999999976554332 24
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+++.+|++++|+|++++.+.+... +...+.. .+.|+++|+||+|+. +....+++.+.+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR--IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 578999999999998776655442 2222222 478999999999997 3222333333332211112346799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=137.54 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc------ccccccc--cCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYF--QNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~~d 86 (181)
++|+++|.||+|||||+|+|.+.+.. . ...|+......+...+..+.++|+||--... .....++ ..+|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998743 2 3346677777788888999999999942222 1223333 5799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. +.......++.+ .++|+++++||+|..... ..+.+.+.++. +++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 99999999753 333444444444 489999999999986543 34555555554 689999999
Q ss_pred CCCHHHHHHHH
Q 030187 163 GEGLYEGLDWL 173 (181)
Q Consensus 163 ~~~v~~~~~~l 173 (181)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=136.62 Aligned_cols=154 Identities=20% Similarity=0.186 Sum_probs=103.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc---Cc-cceeEEEEEEcCEEEEEEEcCCCCCccc--------ccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PT-IGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 83 (181)
+..+|+++|++|+|||||+|++.+....... .+ .......+...+..+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999887643111 12 1122223444568899999999765432 2234578
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|++++ +.....++.+.+.. .+.|+++++||+|+.. .....+....+... ....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 89999999999876 22233333333332 2688999999999873 33333333333221 1134688999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|++++++.|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999997753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=139.53 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcc----ccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR----PLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~ilv~d~ 94 (181)
+|+++|++|+|||||+|++.+.... ..++.+.. +... .+||+||..... ......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v~-----~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAVE-----FNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEEE-----ECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865421 12222222 1111 369999973222 2222346899999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
++.+++. ..|+..+ . .+.|+++++||+|+.+. ..+.+.+...... ...+++++||++|.|++++++.+.
T Consensus 75 ~~~~s~~--~~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 9877652 2333332 1 36789999999998653 2333222221111 113799999999999999999998
Q ss_pred HHhh
Q 030187 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8764
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=153.22 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=104.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCE-EEEEEEcCCCCCc--cccc------cccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~------~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... ....|.+.....+...+. .+.+|||+|..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987642 123455555555655543 8899999997432 1112 2336889
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE-EEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (181)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+..... ...... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999988776665432 2233332224789999999999864311 111111 0 1112 4789999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|+++++++|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=143.64 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc---c---cccCccceeEEEEEEc---------------------------C----
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI---V---TTIPTIGFNVETVEYK---------------------------N---- 60 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~---~---~~~~t~~~~~~~~~~~---------------------------~---- 60 (181)
++|+++|+.|+|||||+..+.+... . ....++...+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999998865421 0 1111222222111111 2
Q ss_pred --EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030187 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 61 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
..+.+|||||++++...+...+.++|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67899999999998888888888999999999998632111111122111 111 235799999999987532222
Q ss_pred ---HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++...+.. ....+++++++||++|.|++++++.|.+.+..
T Consensus 158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12221111 11124578999999999999999999987754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=141.28 Aligned_cols=159 Identities=24% Similarity=0.198 Sum_probs=113.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc---------------------ccccCccceeEEEEE--EcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------VTTIPTIGFNVETVE--YKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~---------------------~~~~~t~~~~~~~~~--~~~~~~~i~D~~G~ 71 (181)
++..+|+++|+.++|||||+++|..... ....-|.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3567999999999999999999974321 012336666777777 78899999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhh-CCCc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKL-GLHS 147 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~-~~~~ 147 (181)
.+|.......++.+|++|+|+|+.+.-..+ ....+..... .++|+++++||+|+..... .+++...+ ....
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999988888899999999999997553222 2222222222 5788999999999983211 11222122 1111
Q ss_pred ccC-cceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
... ..++++.+||.+|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3578999999999999999999998764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=133.68 Aligned_cols=109 Identities=25% Similarity=0.452 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---cccC----ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
||+|+|++|+|||||+++|.+..+. ...+ +..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 1111 22222222222344599999999999888877779999999999
Q ss_pred EECCCcccHHHHHHH---HHHHhcCCCCCCCeEEEEEeCCC
Q 030187 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piivv~nK~D 129 (181)
||++++++++.+..+ +..+.. ...++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999887554 333322 124699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=153.97 Aligned_cols=157 Identities=27% Similarity=0.309 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcCEEEEEEEcCCCCCc----ccc---ccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d 86 (181)
-.+|+++|.||+|||||+|+|.+.+.. . ..+|...+...+...+..|.+||+||.-.. ..+ ...++.++|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 358999999999999999999876532 1 234566666677788889999999995321 111 233467899
Q ss_pred EEEEEEECCC----cccHHHHHHHHHHHhcCC----------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcccCc
Q 030187 87 GLIFVVDSND----RDRVVEARDELHRMLNED----------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR 151 (181)
Q Consensus 87 ~~ilv~d~~~----~~s~~~~~~~~~~~~~~~----------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 151 (181)
++++|+|+++ +++++....+..++.... .....|+++|+||+|+.+.....+. ...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 9999999975 345555444333332221 2346899999999999754322222 2222 122
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+++++++||+++.|+++++++|.+.+.
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988764
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=158.12 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-------c----cc-------ccCccceeEEEEEE-----cCEEEEEEEcCCCCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-------I----VT-------TIPTIGFNVETVEY-----KNISFTVWDVGGQDKI 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-------~----~~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~ 74 (181)
-+|+++|++++|||||+++|.... + .. ...|+......+.+ ..+.+++|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999997532 1 01 01222222223333 2388999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQR 151 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 151 (181)
...+..+++.+|++++|+|+++..+.+....|+... . .++|+++++||+|+...... +++.+.++..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999877777666554332 2 36799999999998654221 2333333321
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|++++|+.|.+.+..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999987753
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=141.51 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=102.4
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeEE-EEEEcCEEEEEEEcCCCC----------Ccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQD----------KIRPLWR 79 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~----------~~~~~~~ 79 (181)
.+.....+|+++|++|+|||||++++.+..+ ....++.+.+.. .+...+.++.+|||||.. ++.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3445668999999999999999999998753 333333332221 111124789999999953 2223333
Q ss_pred ccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEE
Q 030187 80 HYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 80 ~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
.+++. ++++++|+|++.+.+... .++...+.. .+.|+++++||+|+.+....+......... ....+..++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCceE
Confidence 44443 467888899876543322 222233322 468899999999987643332222111110 111134688
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||+++.|++++++.|.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988765
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=156.57 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc---CccceeEEEEEEcCE-EEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+..+|+++|++++|||||+++|.+..+.... .|..+....+...+. .+.+||||||+.|..++...++.+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 346789999999999999999999887654321 244444445555443 8999999999999999988899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (181)
+|+|+++...-+.. ..+... . ..++|+++++||+|+.... .+++...+..... -....+++++||++|.|
T Consensus 164 LVVda~dgv~~qT~-e~i~~~-~---~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHA-K---AANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHH-H---HcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99998764322222 222221 1 2478999999999986532 2233222211111 01235789999999999
Q ss_pred HHHHHHHHHH
Q 030187 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~l~~ 175 (181)
++++++++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999998864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=132.33 Aligned_cols=151 Identities=24% Similarity=0.202 Sum_probs=105.7
Q ss_pred EEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEc-CEEEEEEEcCCCCCcccc-------ccccccCccEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLI 89 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~i 89 (181)
++|++|+|||||++++.+..... ...+........... ...+.+||+||....... ...+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998875431 112333333333333 678999999998766543 334778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+|+.+..+..... +...... .+.|+++++||+|+.......................+++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877666654 2323222 58899999999999876544443221122222334567999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-22 Score=154.50 Aligned_cols=147 Identities=23% Similarity=0.299 Sum_probs=102.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCC--------ccccccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+...+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987632 2222 44445556677789999999999887 223345667899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+.++.+. ...++.+.+.. .+.|+++++||+|..+.. ....+..... .. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence 999999999764332 22233333333 378999999999975421 1222222111 11 267899999999
Q ss_pred HHHHHHHHHHH
Q 030187 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 v~~~~~~l~~~ 176 (181)
++++++.+...
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=149.91 Aligned_cols=152 Identities=25% Similarity=0.272 Sum_probs=106.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCCC----cccccc---ccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWR---HYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~---~~~~~~d~ 87 (181)
.|+++|.||+|||||++++.+.+.. ....|...+...+... +..+.+||+||... ...+.. .++.++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999876532 1123455555556655 67899999999643 222222 33556999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC
Q 030187 88 LIFVVDSNDR---DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|+|+++. ++++....+..++.... ...++|+++|+||+|+..... .+.+.+.+. .+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 66666666555554322 234789999999999854311 122222222 3688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
+.|+++++++|.+.+.
T Consensus 312 geGI~eL~~~L~~~l~ 327 (424)
T PRK12297 312 GQGLDELLYAVAELLE 327 (424)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=154.43 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=105.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCC--------CccccccccccCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|.+.... ... .|....+..+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987632 222 24444556667788899999999963 23344566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++++|+|+.+.-+. ....+...++. .++|+++|+||+|+............++.. +++++||+.|.|+
T Consensus 81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence 99999999764332 22333444443 478999999999987643221111122221 4789999999999
Q ss_pred HHHHHHHHHHhh
Q 030187 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~l~~~l~ 178 (181)
+++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999988774
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=149.83 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=108.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-----------cc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 79 (181)
...++|+++|.+|+|||||+|++.+.... ...+ |.......+...+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999977632 2222 222223345557788999999996543221 12
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|++++.+.+... +...+.. .+.|+++++||+|+.+....+++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 3578899999999998776655442 2222222 4689999999999875433334433332221122345799999
Q ss_pred ccCCCCHHHHHHHHHHHh
Q 030187 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l 177 (181)
|++|.|++++++.+.+..
T Consensus 326 A~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987754
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=144.78 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=104.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccceeEEE-EEEcCEEEEEEEcCCCCCccc--------ccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 83 (181)
+.-.|+++|+||+|||||+|+|.+.+.....+ |....... ...++..+.+|||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999887542222 22222222 223558999999999754332 2234567
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++|++++|+|+++. +.....++.+.+.. .+.|+++|+||+|+.. ..........+... .....++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999862 23333444444442 4689999999999973 22222333322211 1124688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
+.|++++++.|.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=157.39 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=111.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+...|+++|+.++|||||+++|....+... ..|..+..+.+.+.+..+++|||||++.|..++...++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999987665421 123334445566677899999999999999999888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (181)
|+|+++.-.-+.... +.. .. ..++|+++++||+|+.... ...+...+..... ....++++++||++|.|+
T Consensus 367 VVdAddGv~~qT~e~-i~~-a~---~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQTIEA-INH-AK---AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhHHHH-HHH-HH---hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986422222211 221 11 2578999999999996542 2233222211101 112368999999999999
Q ss_pred HHHHHHHHH
Q 030187 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~l~~ 175 (181)
+++++.|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=158.27 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=105.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccce----eEEEEEEcCEEEEEEEcCCCCC--------ccccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 82 (181)
....+|+++|.+|+|||||+|+|.+.......++.+. ........+..+.+|||||... +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998764322222332 2333455678999999999763 223344567
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|++++|+|+++. +......+.+.+.. .++|+++|+||+|+..... .......+. . + ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~---~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L---G-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C---C-CeEEEECCC
Confidence 899999999999753 33444444455543 5789999999999865321 112211111 1 1 235899999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|+++++++|.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987753
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=158.18 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=109.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCC----------cccc-ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~ 80 (181)
...+|+++|.+|+|||||+|+|.+.+. ....+ |.+.....+..++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 358999999999999999999998864 22222 33333344566777889999999542 1111 123
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|+++..+.+... .+..+.. .+.|+++|+||+|+.+....+.+.+............+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887777654 3333333 47899999999999764333333332221111112235678999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=151.01 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=104.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.... .. ....|++.....++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4677999999999999999999997321 00 1233666666777778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~- 136 (181)
+..+.+|||||+++|.......+..+|++++|+|++++.++.....+...++... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666789999999999986323322222222333221 2357999999999975221 1
Q ss_pred ---hHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+++.+.+.........++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223467999999999999873
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=136.64 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=94.4
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeE--EEEEEcCEEEEEEEcCCCCC----------ccc
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRP 76 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~ 76 (181)
...+..+.++|+++|++|+|||||+|++.+..+ ....++.+.+. ..+... -.+.+||+||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345667889999999999999999999998752 22223332221 112222 2799999999532 222
Q ss_pred ccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccc
Q 030187 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 149 (181)
Q Consensus 77 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (181)
....+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+...... +++.+.+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 2233444 46899999999765443333 22233333 47899999999998754322 2233333321
Q ss_pred CcceEEEEecccCCCCHH
Q 030187 150 QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~ 167 (181)
..+..++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 223478999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=147.25 Aligned_cols=148 Identities=23% Similarity=0.251 Sum_probs=111.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~ 84 (181)
..|+++|.||+|||||+|+|.+.+..- ...|.+-.+....+.+..|.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988542 2336666677788888899999999966332 224456788
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
||++++|+|. .+........+.++++. .++|+++|+||+|....+....-...+++. ..+.+||..|.
T Consensus 84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 9999999999 44455666666676663 569999999999987432222222223333 46789999999
Q ss_pred CHHHHHHHHHHHh
Q 030187 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~v~~~~~~l~~~l 177 (181)
|+.++++.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=154.67 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=108.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC---cc---cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE---IV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~---~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.|+++|++++|||||+++|.+.. +. ....|++..+..+...+..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998643 21 123355555666777778999999999999998888888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHH----HhhhCCCcccCcceEEEEecccCCCCH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEI----TDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|+++....+. ...+ .++.. .++| +++++||+|+.+....+.. ...+..... ..+++++++||++|.|+
T Consensus 81 VDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 99986321111 1111 12222 3566 9999999999764322221 111111101 11468999999999999
Q ss_pred HHHHHHHHHHhh
Q 030187 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~l~~~l~ 178 (181)
+++++.|.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999998876553
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=151.36 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=103.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+++|... ... ....|++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356799999999999999999999741 110 1123555556667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~ 136 (181)
+..+.+||+||+++|.......+..+|++++|+|+++.+++..... +...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8999999999999988777777889999999999987754321111 111222221 2358999999999975321 1
Q ss_pred ----hHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222346899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-21 Score=153.97 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCcc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
..+..+|+++|++++|||||+++|....+... ..|..+..+.+.. .+..+.+|||||++.|...+..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999987665421 1233322333322 3589999999999999999998999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++....+.... +..+ . ..++|+++++||+|+.... ...+...+..... ....++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~~~-k---~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-INYI-Q---AANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HHHH-H---hcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999976433222221 2222 2 2578999999999987642 2333332211100 11236899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~v~~~~~~l~~~ 176 (181)
|.|++++++.|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999988764
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=125.82 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=127.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc----------cc---cCccceeEEEEEEcC-EEEEEEEcCCCCCccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----------TT---IPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------~~---~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~ 78 (181)
.+....||+|+|+.++||||++.++...... .. ..|+.+++......+ ..+.+++||||++|.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 4567789999999999999999999876531 11 246667776666655 899999999999999999
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+.+.+.+.|+++|.+.+..+ -...+.+++.... .+|+++++||.|+.+....+.+.+.+.... .+.+.++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988887 2233444444422 299999999999999988888888887763 34578999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
+|.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999988765
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=149.86 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=109.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--c---------cc-------ccCccceeEEEEEE-----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--I---------VT-------TIPTIGFNVETVEY-----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~---------~~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~ 72 (181)
+.-+++++|+.++|||||+.+|.... + .+ ...|+......+.+ .++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999997521 1 11 11233333333333 36889999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++....+....|.. ... .++|+++|+||+|+...... +++.+.++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 999999999999999999999987655555444432 222 36889999999998654321 2233322221
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 --ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred --cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1247899999999999999999987753
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=143.14 Aligned_cols=159 Identities=22% Similarity=0.178 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-EEEEEEEcCCCCCcc-------ccccccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ 87 (181)
.|+++|.||+|||||+|.|.+.+.. . ...|.......+...+ ..+.++|+||.-+-. .....++.++|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999876531 1 2235555555566654 469999999964321 112235788999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~ilv~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|+|++ +.++++....+..++... ....+.|+++|+||+|+.......+..+.+... . ....+++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 455666666655555432 122468999999999987653333322222111 0 11124789999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988753
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=135.68 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=109.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEE-EEEEcCEEEEEEEcCCCCCcc--------ccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVE-TVEYKNISFTVWDVGGQDKIR--------PLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 82 (181)
.++-.|+++|.||+|||||+|++.+.+..- ...|...... .+..++.++.++||||--+-. ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 456689999999999999999999998542 2234443333 344567899999999943222 2234556
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEeccc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..+|++++|+|+++. +.....+..+.++. .+.|+++++||+|...... .....+.+... .....++++||+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeecc
Confidence 889999999999754 22344445455543 4689999999999887654 22332222211 111268899999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++.+.+.+...|.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999887753
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=130.86 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=100.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccCccEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 88 (181)
+|+++|++|+|||||+++|.+.... . ..+|.......+...+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999986532 1 1234444455566788999999999975433 1234578999999
Q ss_pred EEEEECCCccc-HHHHHHHHH----------------------------------------HHhcCC-------------
Q 030187 89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED------------- 114 (181)
Q Consensus 89 ilv~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|+++++. ...+...+. .++.+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999986542 222222111 011000
Q ss_pred ---------C--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 115 ---------E--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ---------~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
. ..-+|+++|+||+|+......+. +.. ..+++++||++|.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 02368999999999865432221 111 12477899999999999999998865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=148.63 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=114.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcC--Cccc-----------------ccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLG--EIVT-----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
+|+++|+.++|||||+++|... .+.. ...|+......+.+.+..+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999752 2211 12344555567888899999999999999998889
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--cCcceE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHWY 154 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 154 (181)
.+++.+|++++|+|+.+. .......+|..... .++|+++++||+|+.+... ..++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999753 33444555655544 4788999999999865422 1222222221111 234568
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHhhc
Q 030187 155 IQSTCATSGE----------GLYEGLDWLSNNIAN 179 (181)
Q Consensus 155 ~~~~Sa~~~~----------~v~~~~~~l~~~l~~ 179 (181)
++.+||++|. |++.+|+.+++.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999987753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=145.34 Aligned_cols=161 Identities=18% Similarity=0.113 Sum_probs=104.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEE--------------E------------cCEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVE--------------Y------------KNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~--------------~------------~~~~ 62 (181)
+..++|+++|++++|||||++.|.+.... ....|+...+..+. . ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56799999999999999999999653211 11112222211110 0 1367
Q ss_pred EEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030187 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 142 (181)
+.+||+||+++|...+......+|++++|+|+++..........+. .+... ...|+++++||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888889999999999985431111122222 12211 23578999999999764322111111
Q ss_pred hC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 143 LG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+. .......+++++++||++|.|++++++.|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11 0111123568999999999999999999988654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=130.66 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=110.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++|+|||||+++|.... .. ....|+......+.+.+.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999996421 00 1112444455677888999999999999999988
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC---------
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL--------- 145 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~--------- 145 (181)
+..+++.+|++++|+|+++.-.. ....+|..... .++|+++++||+|+.... ..+++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999865433 23333433322 478999999999987421 11111111110
Q ss_pred -----------------------------------------------CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 146 -----------------------------------------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
......-+|++..||.++.|+..+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000224478999999999999999999988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=137.16 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=110.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccc--cCccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++++++|.||+|||||+|.|.+.+. .+. ..|.++-...++..++.+++.||+|-.+.... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 4779999999999999999999998873 333 34667777788899999999999996654433 23456
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+||.+++|+|++.+.+-....... .+. .+.|+++|.||.|+......... ... .+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~--~~~----~~~~~i~v~NK~DL~~~~~~~~~--~~~------~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE--LLP----KKKPIIVVLNKADLVSKIELESE--KLA------NGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH--hcc----cCCCEEEEEechhcccccccchh--hcc------CCCceEEEEecC
Confidence 7899999999998753222222211 222 57899999999999876553333 111 122578999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++.+.+.|.+.+.
T Consensus 361 ~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 361 GEGLDALREAIKQLFG 376 (454)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 9999999999887654
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=132.00 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEcCEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++|+|||||+++|.... .. ....|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996432 10 012244444555666778999
Q ss_pred EEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030187 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (181)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~ 142 (181)
+|||||+++|...+...++.+|++++|+|++++..-+. .....++... ..+++++++||+|+.+... ...+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887666667889999999999976532111 1111222221 1346888999999875321 1112111
Q ss_pred hC--CCcccCcceEEEEecccCCCCHHH
Q 030187 143 LG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+. ...+.....+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 001111234689999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=148.72 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=97.9
Q ss_pred cCCCCChHHHHhhhhcCCc-ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc------ccccc--cCccEEEEEE
Q 030187 24 GLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (181)
Q Consensus 24 G~~~~GKssli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ilv~ 92 (181)
|+||+|||||+|++.+... ....| |.+.....+..++.++++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998764 23333 333344456667788999999999877653 23332 3789999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+++.+. ...+..+..+ .+.|+++++||+|+.+.... +.+.+.+ +++++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2333333333 47899999999998653321 2222222 34689999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=122.43 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=126.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...-.+||.++|++..|||||+-++.++.+. ....+.+++... +. ..++.|.+||.+|++++.+..+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 3345689999999999999999999998874 445566766543 33 346889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++||++.++++.+...|+.+.-..+. .-+| ++||||-|..-. .+.++-....+...++..+.+.|.||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999988755432 2334 678999996432 22233333334444555667888999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
|..+|.-+..++.
T Consensus 174 v~KIFK~vlAklF 186 (205)
T KOG1673|consen 174 VQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998777654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=145.14 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=102.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEE----------------cCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~ 74 (181)
+..-|+++|++++|||||+++|.+..+... .++++..+...+. ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999988765422 2233333322211 0123889999999999
Q ss_pred cccccccccCccEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA 137 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~ 137 (181)
..++..+++.+|++++|+|+++. ++++.+. .+.. .+.|+++++||+|+.... ...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999899999999999999863 3333322 2222 478999999999986410 000
Q ss_pred HHH-----------hhhCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 138 EIT-----------DKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 138 ~~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+. ..+....+ -....+++++||++|+|+++++++|..
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 010 01111111 123578999999999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=145.07 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc--CCccc-------------ccC----ccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL--GEIVT-------------TIP----TIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~--~~~~~-------------~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
+-.+|+++|+.++|||||+++|.. +.+.. ... |+......+.+.+..+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 22211 112 22333445667889999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC-Ccc-cCc
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL-HSL-RQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~~ 151 (181)
.+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|...... ..++...+.. ... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999764322 23333444333 4788899999999876432 2233333311 111 234
Q ss_pred ceEEEEecccCCC----------CHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~----------~v~~~~~~l~~~l~ 178 (181)
.++++.+||++|. |+..+++.+++.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 5789999999998 58899999888765
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-20 Score=149.21 Aligned_cols=151 Identities=20% Similarity=0.168 Sum_probs=104.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCccceeEEEEEEcCEEEEEEEcCCCCCcccc----------cccc-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHY- 81 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~- 81 (181)
+.++|+++|+||+|||||+|++.+.... .. ..|++.....+...+.++++||+||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4579999999999999999999876532 22 22444444556677889999999998766432 1122
Q ss_pred -ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 82 -FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 -~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
...+|++++|+|+++.++ ...++.++.+ .++|+++++||+|..+........+.+. +..+++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 247999999999987543 2334444433 4789999999999875432221111111 112346889999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
++|.|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999887654
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-21 Score=124.37 Aligned_cols=163 Identities=33% Similarity=0.581 Sum_probs=138.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
++.=|++++|.-|+|||||++-|...+.....||.-.+.......+++|+.+|.+|+.+.+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 45679999999999999999999988877777877777777888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEecccC
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~ 162 (181)
.+.+.|.+....+..++........|+++.+||+|.+.+....+..-.+++. ....+.+..|-||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 9999999999988888877667899999999999999887666665544321 1233567788899999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|--+.|.++...+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 888888887776543
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=124.25 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=132.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
-.++++++|..|.||||+.++...+++. +..+|++........ ..++|..|||.|++.+......++-++.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999987 467798988765443 34899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||++..-++.+...|..++.+.. +++||+++|||.|..... .........+..++.+++.||+.+.|.+.=|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999999999999999988765 469999999999987653 1223334445567789999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
-++.+++.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988775
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=133.11 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=96.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---------------------------cc-------cccCccceeEEEEEEcCEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IV-------TTIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+.+|.... .. ....|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995210 00 112244455566777889999
Q ss_pred EEEcCCCCCccccccccccCccEEEEEEECCCccc---H---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----
Q 030187 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---- 134 (181)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---- 134 (181)
+||+||+.++...+...++.+|++++|+|+++... + ......+. ..... ..+|+++++||+|+....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777788999999999987421 1 11112221 22211 236899999999997421
Q ss_pred CHhHHHhh----hCCCcccCcceEEEEecccCCCCHH
Q 030187 135 NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
..+++... +........+++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 2222223345789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-20 Score=141.06 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=102.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEEE--------------c------------CE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEY--------------K------------NI 61 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~--------------~------------~~ 61 (181)
.+.+++|+++|+.++|||||+..|.+.... ....|+...+..+.. . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999999653111 112233322211110 0 25
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--- 137 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--- 137 (181)
.+++||+||+++|..........+|++++|+|++++. .-+. ...+. .+... ...|+++++||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~-~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLM-ALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHH-HHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 7899999999988877666667789999999998543 1111 11111 12211 234689999999997643322
Q ss_pred -HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 138 -EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++...+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12221111 1123468999999999999999999988664
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=127.49 Aligned_cols=145 Identities=18% Similarity=0.120 Sum_probs=97.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----------c--c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE----------I--V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~----------~--~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+++|+++|++++|||||+++|.... . . ....|+......+..++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5799999999999999999997531 0 0 1222444444556666788999999999988877
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcccCc
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+...- ..........+.. .++| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 777788999999999997532 2222222222332 3555 7899999998643221 1 22222222222334
Q ss_pred ceEEEEecccCCCCH
Q 030187 152 HWYIQSTCATSGEGL 166 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (181)
+++++.+||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 678999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=135.63 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=112.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCC----------cccc-ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~ 80 (181)
+.++|+++|.||+|||||+|.+.+.+..- ...|.+.-...+++++-++.++||+|-.+ |... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988542 23344544556777888999999999432 2211 245
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+..+|.+++|+|++++ +......+..++.. .+.++++++||+|+.+. ...++....+......-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 56789999999999655 55566666666555 68899999999998775 3333343333322222233478889
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 030187 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l 177 (181)
||++|.|++++|+.+.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999887653
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=115.68 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=122.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccce-eEEEEEEc---CEEEEEEEcCCCCCc-cccccccccCccE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGF-NVETVEYK---NISFTVWDVGGQDKI-RPLWRHYFQNTQG 87 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~-~~~~~~~~---~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 87 (181)
+..|++|+|.-++|||+++.++..+... +..||+.- ....++.+ .-.++++||.|-..+ ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5589999999999999999999876643 44556553 33344442 357899999998877 5556788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++||+..+++||+.+...-.++-+......+||++++||+|+.++ .++....+-.+++...+..+++++.+...+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999998876666666666677999999999999755 2222333333444455678899999999999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
|-|-.+...+.
T Consensus 165 epf~~l~~rl~ 175 (198)
T KOG3883|consen 165 EPFTYLASRLH 175 (198)
T ss_pred hHHHHHHHhcc
Confidence 99999887664
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=119.92 Aligned_cols=135 Identities=23% Similarity=0.279 Sum_probs=92.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCC----CCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|+.|+|||||+++|.+.... ...|..+.+ .+ ..+||||. +.+.........+||.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~-----~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEY-----YD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEe-----cc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 7999999999999999999987642 222322221 22 44999993 44554455555789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
+++.+. ....+... ...|+|-|+||+|+. +....+...+.+.....+ .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 876432 11112222 357899999999998 344444444445444343 35899999999999999987
Q ss_pred H
Q 030187 174 S 174 (181)
Q Consensus 174 ~ 174 (181)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=141.55 Aligned_cols=154 Identities=22% Similarity=0.262 Sum_probs=102.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc-----CccceeEEEEEE------cC-----E-----EEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY------KN-----I-----SFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~------~~-----~-----~~~i~D~~G~~ 72 (181)
.-++..|+++|++++|||||+++|.+....... ++++.++..... .. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 346778999999999999999999765543222 233333222111 00 1 26899999999
Q ss_pred CccccccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------------- 135 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------------- 135 (181)
.|...+...++.+|++++|+|+++ ++++..+. .+.. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999988888899999999999986 34443332 2222 4789999999999852100
Q ss_pred Hh-----------HHHhhhCCCccc----------CcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 AA-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~-----------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.. ++...+....+. ....+++++||++|.|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 011111111111 23578999999999999999988764
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=126.18 Aligned_cols=152 Identities=24% Similarity=0.252 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-----------------ccCc-------ccee-----------------EEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPT-------IGFN-----------------VETVE 57 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t-------~~~~-----------------~~~~~ 57 (181)
+|+++|+.++|||||++++..+.+.. ..-| .+++ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998643311 0001 1111 01233
Q ss_pred EcCEEEEEEEcCCCCCcccccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+..+.++|+||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 44678999999999988766544443 699999999986542 2333323333333 4688999999999876433
Q ss_pred HhH----HHhhhCCCcc---------------------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 AAE----ITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~~----~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
... +.+.+..... .....++|.+||.+|.|+++++..|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222 2233332111 122348999999999999998877643
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=142.67 Aligned_cols=156 Identities=20% Similarity=0.111 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC---cc---cccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE---IV---TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~---~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+-|+++|++++|||||+++|.+.. +. ....|++..+..+.. .+..+.+||+||+++|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998633 21 124465555555544 34678999999999998877778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCC--cccCcceEEEEecccCCCCHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
|+|+++.-. ........++.. .++| +++|+||+|+.+....+.+..++... .....+.+++++||++|.|++
T Consensus 81 VVda~eg~~--~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVM--AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999875321 111111122222 2344 68999999997643332222222100 011123578999999999999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
++++.|.+...
T Consensus 156 ~L~~~L~~~~~ 166 (614)
T PRK10512 156 ALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHhhc
Confidence 99999987543
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-19 Score=119.64 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcCEEEEEEEcCCCCC----------cccccccccc--
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~-- 83 (181)
.|+++|++|+|||||++.+.+.... ...++.+.+. ..+.... .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999954432 2333333222 2222233 899999999543 2333333333
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEeccc
Q 030187 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (181)
+++++++++|.....+.... .....+.. .+.|+++++||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999998755322211 11122222 25789999999998654332222222211000 1223468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030187 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l 177 (181)
++.|++++++.|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=135.93 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=106.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+... . ....|++.....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46679999999999999999999975210 0 1222444444455556778999999999998
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-.-+. ...+. ++.. .++| +++++||+|+.+..... ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8777777788999999999975322121 22222 2222 3566 78899999987532222 22222222222
Q ss_pred cCcceEEEEecccCCC--------CHHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~~~~~l~~~l~ 178 (181)
.....+++++||++|. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 67888888877653
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-19 Score=125.25 Aligned_cols=159 Identities=24% Similarity=0.308 Sum_probs=103.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEE-cCEEEEEEEcCCCCCcccc-----ccccccCccEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----WRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d~~ 88 (181)
||+++|+.||||||+.+-+..+. .....+|..+....+.. ..+.+++||.||+..+... ....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999988887654 33456788888877764 5689999999999765443 46778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhh----CC--CcccCcceEEEEecc
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKL----GL--HSLRQRHWYIQSTCA 160 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~Sa 160 (181)
|+|+|+.+.+ +.....++...+.. ...++..+.++++|+|+..+....+..+.. .. .......+.++.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998443 44444444443332 233788999999999987643222222111 10 011111478999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
.+ ..+-++|..++..|..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 99 5899999999998763
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=131.67 Aligned_cols=158 Identities=20% Similarity=0.155 Sum_probs=103.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC-------Cc-----c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~-------~~-----~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+. .. . ....|+......+..++..+.++||||+.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56689999999999999999999752 10 0 11224444444455567789999999999887
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+...-+ ....+.. +.. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788999999999997532211 1222222 222 356654 68999999753221 1 222222111112
Q ss_pred CcceEEEEecccCCC----------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 177 (181)
..+++++++||++|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 235789999999984 6788888887755
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=115.72 Aligned_cols=165 Identities=25% Similarity=0.387 Sum_probs=121.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc---CccEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGL 88 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 88 (181)
..++.+-.|+++|+.+||||+|+-+|..+.+....+++..+...+.......+++|.|||++.+.....++. ++.++
T Consensus 33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 444555789999999999999999999998877777777788788888778999999999998877666666 79999
Q ss_pred EEEEECCC-cccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------------------
Q 030187 89 IFVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG--------------------- 144 (181)
Q Consensus 89 ilv~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~--------------------- 144 (181)
++|+|+.. ........+.+.+++-.. ....+|++++.||.|+.-+...+-+++.++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999763 344455555555555544 245789999999999976533322222111
Q ss_pred --------------CCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 145 --------------~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....+..++.|.++|++++ ++++.-+|+.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011124577999999998 8999999987653
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=134.08 Aligned_cols=149 Identities=21% Similarity=0.293 Sum_probs=110.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-cccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------ccccccc--cC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~ 84 (181)
+..+|+++|+||+|||||+|++.+.. ...+.| |++.....+..++.+++++|.||-=... .....++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 34679999999999999999999865 345555 6666677788888889999999932221 1122222 35
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|+++.|+|+++.++- .....++++ -+.|+++++|++|.... .+.+.+.+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 7999999999876443 333334444 48889999999998764 355666666665 5899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++.+.+.+....
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875543
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=116.62 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=107.5
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCC-cccccCccc----eeEEEEEEcCEEEEEEEcCCC----------CC
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQ----------DK 73 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~----------~~ 73 (181)
....+.....-|+++|.+|+|||||||.|.+.+ ......|+| +++ ++..+ .+.++|.||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~-~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD-ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecC-cEEEEeCCCcccccCCHHHHHH
Confidence 345666778899999999999999999999966 333333444 444 33333 2899999994 23
Q ss_pred cccccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030187 74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (181)
+......|+. +..++++++|+. .........+.+++.+ .++|+++++||+|....... ..+.+.+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 3344444544 356888999984 3344444445555554 58999999999998875433 3334344433
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.... .+ ++.+|+.++.|++++...|.+.+..
T Consensus 168 ~~~~-~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDD-QW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCcc-ce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 2211 11 6678999999999999999887653
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=123.01 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=80.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc-------------------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++|+|||||++++.... .. ....++......+.+.+..+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999996422 00 0122444455567778899999999999988888
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+++........ .|..... .++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCccCC
Confidence 888899999999999998765443322 2222222 4689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=133.46 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=96.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+..- . ....|+......+..++..+.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 46679999999999999999999986310 0 0122333334445556788999999999988
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.- .........++.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 877777788999999999997532 2222222222222 3567 7789999999764321 1 22222222122
Q ss_pred cCcceEEEEecccCCCC
Q 030187 149 RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (181)
....++++.+||.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22347899999999863
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=134.45 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=103.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC---------------------------cc-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE---------------------------IV-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~ 59 (181)
.+.+++|+++|+.++|||||+.+|.... .. ....|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3677999999999999999999885310 00 1122555566667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~D~~ 131 (181)
+..++++|+|||++|.......++.+|++++|+|+.+ ..|+ .....+. ++.. .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 8999999999999999999999999999999999975 2332 2222222 2222 355 578899999976
Q ss_pred CCC----C----HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 132 NAM----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+.. . .+++...+....+...+++|+++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 311 1 222333333223333457899999999999853
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=130.19 Aligned_cols=157 Identities=19% Similarity=0.140 Sum_probs=100.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+..++|+++|+.++|||||+++|.+.. .. ....|+......+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4667999999999999999999996320 00 1233555555556566788999999999998
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-..+. ...+.. +.. .++| +++++||+|+.+..... ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8776666788999999999975322221 122222 222 2555 45789999987542211 22222222222
Q ss_pred cCcceEEEEecccCCC--------CHHHHHHHHHH
Q 030187 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSN 175 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~~~~~l~~ 175 (181)
....++++++||.+|. ++.++++.|.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 2234789999999875 24455555544
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=118.97 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=76.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----------------------ccCccceeEEEEE-----EcCEEEEEEEcCCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT----------------------TIPTIGFNVETVE-----YKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~----------------------~~~t~~~~~~~~~-----~~~~~~~i~D~~G~ 71 (181)
+|+++|++++|||||+++|....... ...++......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 68999999999999999997533110 0012222222222 23478999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+|......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987665533 233333322 358999999999975
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=137.09 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=89.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
.++..+|+++|+.++|||||+++|.... .. ....|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3456899999999999999999997421 00 13346666667788889999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|...+..+++.+|++++|+|+++....+.... |..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHh----cCCCEEEEEECCCCCCC
Confidence 999888999999999999999987766554433 333322 47899999999998764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-19 Score=120.46 Aligned_cols=123 Identities=28% Similarity=0.447 Sum_probs=78.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE---cCEEEEEEEcCCCCCcccccccc---ccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~---~~~~d~~il 90 (181)
.-.|+++|+.|+|||+|+.+|..+.......+...+. .+.. .+..+.++|+|||++.+...... ..++.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 4579999999999999999999997665555543333 2222 34579999999999988765444 788999999
Q ss_pred EEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHH
Q 030187 91 VVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~ 140 (181)
|+|++. ...+....+.+.+++.... ...+|+++++||.|+........+.
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik 134 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIK 134 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHH
Confidence 999873 3455555566655554322 3578999999999998754443333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=129.71 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=83.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc--CCcc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++++|||||+++|.. +... ....++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999963 1100 01113334445677888999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|+.+|......+++.+|++++|+|+++.-.. .....+. .... .++|+++++||+|....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~-~~~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLME-VCRL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHH-HHHh---cCCCEEEEEECCccccc
Confidence 9999988777788999999999999764322 2223332 2222 57999999999998754
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=122.18 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC--cc-----------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
-+|+++|++|+|||||+++|.... .. ....++......+++.+.++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999996421 00 01123344455778889999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG 144 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~ 144 (181)
+|.......++.+|++++|+|+++.... ....+| ..... .++|+++++||+|...... .+++...++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLF-EVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHH-HHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 9887777788999999999999765332 222333 23322 4789999999999876543 344444443
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=134.62 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=123.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE---EEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+..++|+++|+.|+||||||..+...++.+..|..-..+ ..+....+...+.|++..++-+......++.||++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 34577999999999999999999999998876555222111 223334566899999988877777677789999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH-HHhhh-CCCcccCcceEEEEecccCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE-ITDKL-GLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~--~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++|+.+++++++.+...|.+++++... .++|+|+||||+|....... +. +...+ ....++ ..++|||++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE----tciecSA~~~ 160 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE----TCIECSALTL 160 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH----HHHhhhhhhh
Confidence 999999999999999999999998763 46899999999998765433 11 11111 111112 3679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.++.|+|....+++.
T Consensus 161 ~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVI 175 (625)
T ss_pred hhhHhhhhhhhheee
Confidence 999999998877665
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=130.68 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=98.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------c-------------ccccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------I-------------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------~-------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+..++|+++|++++|||||+++|.... . .....|+......+..++..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567899999999999999999998521 0 01122444445556667889999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+...-+ ....+.. +.. .++| +++++||+|+.+.+.. + ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 887777788999999999997543222 2223322 222 3566 7889999999763221 1 22222222222
Q ss_pred cCcceEEEEecccCCC
Q 030187 149 RQRHWYIQSTCATSGE 164 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (181)
...+++++.+|+.+|.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3346789999998874
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=120.37 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=111.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCC-----Ccccc----cccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPL----WRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~----~~~~~~ 83 (181)
+...|+|.|.||+|||||++++.+.+.. ..-.|-+++...+..+...+|++||||-- +.+.+ ....-+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 5689999999999999999999887642 22347778888899999999999999932 11111 112223
Q ss_pred CccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
-.++++|+||++.. -+.+.....|.++-.. .+.|+++|+||.|..+.+..+++.......... ....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceeee
Confidence 47889999999854 4667777777776554 348999999999999877666665544332221 24467888
Q ss_pred CCCCHHHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~ 176 (181)
.+.+++.+-..+...
T Consensus 320 ~~~~~d~~~~~v~~~ 334 (346)
T COG1084 320 KGCGLDKLREEVRKT 334 (346)
T ss_pred ehhhHHHHHHHHHHH
Confidence 888888877776655
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=128.66 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=104.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+... . ....|+......+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999976210 0 12224444444555567889999999999887
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+.-. ........++.. .++|.+ +++||+|+.+... .+ ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM--PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999975422 222222222332 357765 6899999975322 11 222222222222
Q ss_pred CcceEEEEecccCCC----------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 177 (181)
..+.+++.+||+++. ++..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 5677888777654
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=119.79 Aligned_cols=148 Identities=31% Similarity=0.416 Sum_probs=107.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCE-EEEEEEcCCCCCcccc-------ccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRHYF 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~~~ 82 (181)
..+.+||-||+|||||++.+...+ |++..|+++ ++.+++. .+.+-|.||--+-... ...++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 478999999999999999998755 445555555 4555554 4999999994332221 34456
Q ss_pred cCccEEEEEEECCCc---ccHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEE
Q 030187 83 QNTQGLIFVVDSNDR---DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (181)
.+|+.+++|+|++.+ ..++.....+.++-. +..+.+.|.++|.||+|+++.+.. +++.+.+... .++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~ 345 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVV 345 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEE
Confidence 789999999999987 788887776666533 345578899999999998643222 3333333222 588
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 030187 157 STCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~ 176 (181)
++||++++|+.++++.|.+.
T Consensus 346 pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EeeeccccchHHHHHHHhhc
Confidence 99999999999999887654
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=129.76 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=102.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Cc-------------------------c-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI-------------------------V-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~-------------------------~-------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+.+|... .. . ....|+......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999998641 00 0 1122555556667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~ 132 (181)
+..++++|+|||.+|.......+..+|++++|+|+.+.. .+ ......+.. +.. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence 899999999999999888888889999999999997542 11 112222222 222 3544 789999999532
Q ss_pred ----CCCHh----HHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 133 ----AMNAA----EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
....+ ++...+........+++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12222 2333333333333468899999999999864
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=119.42 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=86.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC--Cc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++++|||||+++|... .. . ....|+......+.+.+..+.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999631 10 0 1122455556678888999999999999999888
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~ 145 (181)
+...++.+|++++|+|+.+...-+. ...+... .. .++|+++++||+|+.+... .+++...++.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-DR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 8889999999999999976432222 2223222 22 4689999999999875432 3444444443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=116.71 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=95.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce-----eEEEEEEc-CEEEEEEEcCCCCCccccc-----cccccC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-----NVETVEYK-NISFTVWDVGGQDKIRPLW-----RHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~i~D~~G~~~~~~~~-----~~~~~~ 84 (181)
+++|+++|++|+|||||+|.|.+..... ..++.+. ....+... ...+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3789999999999999999998855322 1111111 11112111 2478999999975432222 223567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCC------ccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLH------SLR 149 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~------~~~ 149 (181)
+|+++++.+ +++......+.+.+.. .+.|+++|+||+|...+.. .+++.+.+... ...
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 899888743 2455555555555554 2578999999999843211 11211111100 001
Q ss_pred CcceEEEEeccc--CCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~v~~~~~~l~~~l~~ 179 (181)
....++|.+|+. .+.|+..+.+.+...|.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 123468889998 579999999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-19 Score=121.20 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=121.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc---CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
++++|+|.-|+|||+++.++....+. .+..|++..+. ...+. -+++++||+.|+++|-.+..-+++.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 79999999999999999999887765 34556665442 12332 26789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||++++-+|+....|..++.... +..-.|+++..||||.......+ .+...-....+ ..++++|+|.+.+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceeeeccccccC
Confidence 99999999999999988875543 33457899999999976542222 12111111112 1578999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
++|+...+++++.
T Consensus 182 i~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 182 IPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999876
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=135.57 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=103.4
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPT 48 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t 48 (181)
+.+++.+...+..++|+++|++++|||||+++|.... .. ....|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4566677777888999999999999999999997532 00 01113
Q ss_pred cceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
+...+..+...+..+.++||||+++|.......+..+|++++|+|+.+...-+.... + .++... ...|+++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh--CCCeEEEEEEec
Confidence 334444566677889999999999887666667789999999999965422111111 1 111111 236789999999
Q ss_pred CCCCCC--CHhHHHhhhCC--CcccCcceEEEEecccCCCCHHH
Q 030187 129 DLPNAM--NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+.+.. ..+++..++.. ......+.+++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 987522 12222222210 01111235688999999999874
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-18 Score=132.24 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=99.0
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCccceeEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETV 56 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~ 56 (181)
..+..++|+++|++++|||||+++|.... .. ....|+...+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45677999999999999999999996431 00 0112344445556
Q ss_pred EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..++..+.++||||+++|.......+..+|++++|+|+.+.-.-+.... .+...+. ..|+++++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchh
Confidence 6677899999999999887666666799999999999875321111111 1122211 247899999999874321
Q ss_pred --HhHHHhhhCC--Cccc-CcceEEEEecccCCCCHHHH
Q 030187 136 --AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 --~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~v~~~ 169 (181)
..++...+.. .... ....+++++||++|.|+++.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222210 0011 12467999999999999764
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-18 Score=129.66 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=95.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCccceeEEEEEEcCE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETVEYKNI 61 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~~~~~~ 61 (181)
++|+++|++++|||||+++|.... .. ....|++.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999995321 00 011244455556667788
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~ 139 (181)
++.++||||+++|.......+..+|++++|+|+...-.-+.... + .++... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-S-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-H-HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777777889999999999875422121111 1 112211 1346899999999875321 1122
Q ss_pred HhhhCC--CcccCcceEEEEecccCCCCHHH
Q 030187 140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
...+.. ......+.+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 01111245799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=117.85 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=103.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccce-eEEEEEEcCEEEEEEEcCCCCC------------cccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGF-NVETVEYKNISFTVWDVGGQDK------------IRPL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~-~~~~~~~~~~~~~i~D~~G~~~------------~~~~ 77 (181)
..+...|+|+|+||+|||||.|++.+.+...... |..- ....+..+...+.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4677899999999999999999999988543222 2222 2233445678999999999321 1111
Q ss_pred ccccccCccEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE 138 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---------------~--~~~ 138 (181)
....+.+||.+++|+|+++.... ..+...+..+ .++|-++|.||.|..... . .-+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 22345789999999999864322 2222223332 578899999999976420 1 223
Q ss_pred HHhhhCCCcc-----cCcce----EEEEecccCCCCHHHHHHHHHHHhh
Q 030187 139 ITDKLGLHSL-----RQRHW----YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~-----~~~~~----~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+++++..... .-+++ .+|.+||++|+|++++-++|..+..
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 3333332210 01122 3788999999999999999987654
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=124.61 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=112.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-----------cc-------cccCccceeEEEEEEc---CEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IV-------TTIPTIGFNVETVEYK---NISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-----------~~-------~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~ 73 (181)
.+--++.|+-+...|||||..+|..-. +. +...|+......+.+. .+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445689999999999999999995311 11 2223444433344343 49999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcccC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQ 150 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~ 150 (181)
|.......+.-|+++++|+|++..-.-+.....+..+. .+..+|.|+||+|++.+...+ ++...+.+...
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-- 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-- 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc--
Confidence 99999888899999999999986544455555554443 367799999999999865432 23333333322
Q ss_pred cceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+.+|||+|.|++++++++++.+.
T Consensus 211 ---~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 ---EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ---ceEEEEeccCccHHHHHHHHHhhCC
Confidence 5678999999999999999999875
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=125.30 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=104.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------C----c--c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------E----I--V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~----~--~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+. . + . ....|++.....++.++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 457799999999999999999999621 1 0 0 1223555555566667788999999999988
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-hHHH----hhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-AEIT----DKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~~~~----~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-. ........++.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7776666678999999999875422 222222223332 4677 5788999998753221 1121 22211112
Q ss_pred cCcceEEEEeccc---CCCC-------HHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------v~~~~~~l~~~l~ 178 (181)
....++++.+|+. +|.| +.++++.|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235788888875 4555 6788888777653
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-18 Score=125.44 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=106.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC---------------------C---c----------ccccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG---------------------E---I----------VTTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~---------------------~---~----------~~~~~t~~~~~~~~~~~ 59 (181)
.+.+++++++|+..+|||||+-+|... . + .+...|++.....++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 367899999999999999999999531 0 0 12334677777788888
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
...+.++|+||+.+|...+.....+||+.|+|+|+.+.+.-.. ....-.-++... .-..+|+++||+|..+..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 9999999999999999999999999999999999975531111 111111111111 134589999999998742
Q ss_pred --CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHH
Q 030187 135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
..+++..+. ....+...+++|+++|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222332222 2333344568899999999999854
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=128.82 Aligned_cols=114 Identities=20% Similarity=0.141 Sum_probs=85.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--c------c-------------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+-.+|+++|++++|||||+++|.... . . ....|+......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 445699999999999999999996321 1 0 112345555667888899999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+...++.+|++++|+|+.+....+.. ..+.. +.. .++|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQ-ANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHH-HHH---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999865444322 22322 222 46899999999998753
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=125.66 Aligned_cols=113 Identities=23% Similarity=0.278 Sum_probs=81.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc--CCcc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++++|||||+++|.. +... ....++......+++.+..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 1110 00113333445677788999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|+.+|.......++.+|++++|+|+++. +......+.+.... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998888777788999999999999753 22222222233333 4789999999999863
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=121.65 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=109.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccceeEEEEEEc---CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
-++.-|.++|+...|||||+..+.........+ |-.+.-+.+... ...+.++|||||+-|..++.....-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356789999999999999999998776543322 333333445543 35899999999999999999888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh--hhCCC-cccCcceEEEEecccCCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLH-SLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~ 165 (181)
+||+++++. +.-....-.+.++. .+.|++++.||+|.++........+ +.++. ..-.....++++||++|+|
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999753 21111111122333 6899999999999986544332222 12221 1123457899999999999
Q ss_pred HHHHHHHHHH
Q 030187 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~l~~ 175 (181)
++++++.+.-
T Consensus 158 i~eLL~~ill 167 (509)
T COG0532 158 IDELLELILL 167 (509)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=119.94 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=103.6
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+....+..+++.+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3577777778888899999999999999999999999999999999999863 567778888888888877
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHH----hhhCCC-cccCcceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNA------------------MNAAEIT----DKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~------------------~~~~~~~----~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.|+++++||.|+... ...+.+. ..+... ....+.+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 789999999999996431 1111111 111110 01235667778999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
+.+.|..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 9887764
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=120.53 Aligned_cols=133 Identities=26% Similarity=0.411 Sum_probs=103.2
Q ss_pred CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 030187 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.|+....+...+..+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 467777777888889999999999999999999999999999999999863 4678888889999888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHH
Q 030187 117 RDAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
.+.|+++++||.|+... ..... +...+....- ..+.+..+.|+|.+-.++..+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 89999999999997531 11111 1122211111 2245677789999999999999998
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.|.+
T Consensus 330 ~~~I~~ 335 (342)
T smart00275 330 KDIILQ 335 (342)
T ss_pred HHHHHH
Confidence 887764
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=113.54 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=77.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc-----------------cccCccceeEEEEEEc----------CEEEEEEEcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV-----------------TTIPTIGFNVETVEYK----------NISFTVWDVG 69 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~-----------------~~~~t~~~~~~~~~~~----------~~~~~i~D~~ 69 (181)
+|+++|+.++|||||+.+|.... .. ....|+......+.+. +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999996432 00 0111322222222222 6889999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+....+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999876555432 22333322 367899999999976
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=116.16 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=109.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCCC---------cccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLWR 79 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~~~ 79 (181)
....-..|.++|-+|+|||||+|.|.+.... ....|.+.+...+... +..+.+-||.|--+ |++..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL- 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL- 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-
Confidence 3446689999999999999999999876532 2234666666666665 57899999999322 33322
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEe
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.....+|.++.|+|+++++....+.. -.+++.......+|+++|.||+|...... ...+.... + ..+.+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~i 336 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFI 336 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEE
Confidence 23467999999999999954444443 44555555556799999999999775533 11111111 1 35679
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|.|++++.+.|.+.+.
T Consensus 337 SA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EeccCcCHHHHHHHHHHHhh
Confidence 99999999999999998775
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=119.50 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=115.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----------c-------ccccCccceeEEEEEE-----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----------I-------VTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----------~-------~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~ 72 (181)
+--+..++-+-..|||||..|+.... . .+..-|+..+..++.+ ..+.++++|||||.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34578899999999999999996421 1 1223344444333333 45899999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|.-..+..+.-|.++++|+|++..=.-+.+...+..+-. +.-++.|+||+|++..+.. .++.+.+++...
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~- 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS- 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-
Confidence 9998888888889999999999877666777777766644 4558999999999987543 344555555433
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..+.+|||+|.||+++++.|++.+..
T Consensus 162 ----dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 ----DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ----hheeEecccCCCHHHHHHHHHhhCCC
Confidence 35689999999999999999998763
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=123.29 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=104.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEE-----------------EE-----------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETV-----------------EY----------- 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~-----------------~~----------- 58 (181)
.++..++|.++|+..+|||||+..|.+.... ...-|+...+... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4567799999999999999999999864321 1111222211111 00
Q ss_pred -----cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
-...+.++|+||+++|..........+|++++|+|+.+...-......+. ++... .-.|+++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence 02368999999999998887777889999999999986321111122221 22221 12468999999999764
Q ss_pred CCHhHHHhhhCC--CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 134 MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
...++...++.. ......+.+++++||++|.|++++++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 332222222110 001124568999999999999999999987554
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.1e-16 Score=98.86 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|.|.+.... ....|....+..+...+..+.++||||-.... ......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999985421 12234445455566788889999999954321 1123334789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
|++++|+|++++ .......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHHh----cCCCEEEEEcC
Confidence 999999997652 2222222222222 58999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=114.48 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=55.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEE-------------------E-EcCEEEEEEEcCCC-
Q 030187 20 ILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~G~- 71 (181)
|+++|.|++|||||+|+|.+.. +.+..|+++..+... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999998875 234455555544311 1 13378999999997
Q ss_pred ---CCccccccc---cccCccEEEEEEECC
Q 030187 72 ---DKIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~ilv~d~~ 95 (181)
+++..+... .+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444443333 589999999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=109.65 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=103.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCC----Ccc---ccccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD----KIR---PLWRHYF 82 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~---~~~~~~~ 82 (181)
..+++++|.|++|||||++.|.+.+ |++..+-+++ +++++.++|+.|+||-- ..+ .......
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3589999999999999999998754 3444444444 77889999999999832 222 3355678
Q ss_pred cCccEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCC-------
Q 030187 83 QNTQGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNED------- 114 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~------- 114 (181)
++||++++|+|+..... .+.+...+.+. +.+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999985543 22332222111 1100
Q ss_pred -----------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 115 -----------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 -----------------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
...-+|.+.|.||.|+...+....+.+.. ..+.+||+.+.|++++.+.|.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 00146899999999998854444444433 467899999999999999998876
Q ss_pred h
Q 030187 178 A 178 (181)
Q Consensus 178 ~ 178 (181)
.
T Consensus 289 ~ 289 (365)
T COG1163 289 G 289 (365)
T ss_pred C
Confidence 3
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=107.49 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEEcCEEEEEEEcCCCCCccc-------c----cccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~~~ 81 (181)
.+|+++|.+|+|||||+|.+.+..... ...|...........+..+.++||||-.+... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876432 12355555566667788999999999654321 0 1223
Q ss_pred ccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEE
Q 030187 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (181)
...+|++++|+++.+. +.......++.+.+... .-.+++++.|+.|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4678999999998752 12223333444433321 1247899999999776543333322111 0011111111222
Q ss_pred e-----cccCCCCHHHHHHHHHHHhhc
Q 030187 158 T-----CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~-----Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
. |+..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2 256788899999998887763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=124.92 Aligned_cols=114 Identities=20% Similarity=0.123 Sum_probs=85.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-----c----------------ccccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----I----------------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+..+|+++|++++|||||+++|.... . .....|+......+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 455789999999999999999996420 0 0123366666677888899999999999998
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+...++.+|++++|+|+.+.-.-+.. ..+. .+.. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~-~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWR-QADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999765332222 2222 2222 46889999999998753
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=122.07 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=79.8
Q ss_pred EcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccc
Q 030187 23 VGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 23 ~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
+|++++|||||+++|.... .. ....|++.....+.+.+..+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999994321 00 12335566667788889999999999999888888888
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+|++++|+|+++....+... .+..... .++|+++++||+|....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 89999999999998765544332 2333222 46899999999998753
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=114.30 Aligned_cols=164 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccC----ccceeEEEEEEcCEEEEEEEcCCCCC-cccc--------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDK-IRPL--------WRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~~ 81 (181)
+..++|+++|+||+|||||+|.|...+..-..| |.+.-...++..++.+.+.||+|-.+ .... ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 466999999999999999999999988653333 44444566778899999999999655 1111 2234
Q ss_pred ccCccEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCC-HhH-HHhhhCCCcccCcc
Q 030187 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAMN-AAE-ITDKLGLHSLRQRH 152 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~ 152 (181)
+..+|++++|+|+.. -++-..+...+...-. .+.+.+.|++++.||+|+..+.. ... ....... ...+..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 567999999999932 2222222222222111 13445688999999999876521 111 0000000 111122
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
....++|+++++|++++.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 234569999999999999999887654
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=122.48 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=83.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc--CCc-------------------ccccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEI-------------------VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~-------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
..+-.+|+++|++++|||||+++|.. +.. .....|+......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34556999999999999999999963 110 012234555556677888999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|.......++.+|++++|+|+...-..+.. ..+.. +.. .++|.++++||+|....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~-~~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQ-ADK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHH-HHH---cCCCEEEEEECCCCCCC
Confidence 8877777778899999999998754322222 22222 222 46889999999998753
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=109.30 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=72.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEE--EEEcC--EEEEEEEcCCCCCccc----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRP---- 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~---- 76 (181)
-.++|+++|++|+|||||+|+|++..+.. ..+|....... +...+ +++.+|||||-.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35899999999999999999999877532 13344443332 33333 6799999999432211
Q ss_pred ----------------------ccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 77 ----------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 77 ----------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+...+. .+|+++++++.+. ..+......+...+. .++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 1112223 4788888888764 233333232333333 2589999999999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-15 Score=107.89 Aligned_cols=155 Identities=25% Similarity=0.271 Sum_probs=103.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCCCccc----c---ccccccC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP----L---WRHYFQN 84 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 84 (181)
.|.+||.|++|||||++.+...+ |++..|..++-.. ...-.|.+-|.||--+-.+ + ...++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 67899999999999999997654 4556666665322 3445799999999533222 1 3455678
Q ss_pred ccEEEEEEECCCcc---cHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 85 TQGLIFVVDSNDRD---RVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 85 ~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+.+++.|+|++..+ ..+.......++... ..+.++|.++|+||+|+... +..++..+.+..... ....++ +|
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-IS 314 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-IS 314 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-ee
Confidence 99999999998544 345544444443332 44568899999999996544 344444444432111 111232 99
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|.++.|++++...+.+.+.+
T Consensus 315 a~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 315 ALTREGLDELLRALAELLEE 334 (369)
T ss_pred hhcccCHHHHHHHHHHHHHH
Confidence 99999999999998887653
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=112.44 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=111.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.++.-|.++|+...|||||+..|.+...... ..|-.+--+.+.. .+-.+++.|||||.-|..++.....-.|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4778899999999999999999987665322 1233333333333 45789999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (181)
|+.+.|.=--+ ..+.+++....+.|+++.+||+|.+.... +.+.+++..... -+-++.++++||++|.|+
T Consensus 231 VVAadDGVmpQ-----T~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQ-----TLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHh-----HHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99986532112 22223333337899999999999886644 333333332222 234678999999999999
Q ss_pred HHHHHHHHH
Q 030187 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~l~~ 175 (181)
+.+.+.+.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999887764
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=104.61 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=105.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccee-EEEEEEcCEEEEEEEcCCCCC-------ccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~-~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 80 (181)
...+.+++|+++|.+|+||||+||.|+.+... ....+..+. +....++.-.+.+||+||.++ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 34568899999999999999999999965432 222222222 222333456899999999665 6677888
Q ss_pred cccCccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHH-hhhC-C
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEIT-DKLG-L 145 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~-~~~~-~ 145 (181)
++...|.++++.++.++. -... ..+.+++... -+.++++++|.+|...+. ..++.. +..+ .
T Consensus 114 ~l~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 114 YLPKLDLVLWLIKADDRA--LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HhhhccEEEEeccCCCcc--ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 899999999999987653 2222 2333333322 237899999999976541 111111 1000 0
Q ss_pred CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
...-+.-.|++..|...+.|++++...+++.+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 000011225667788999999999999998875
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=105.36 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=73.2
Q ss_pred EEEEEEEcCCCCCc---cccccccccC-----ccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..+.+||+||+.+. +..+..+.+. ++++++++|+.......... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 36899999997653 3333333332 88999999996543332222 22222111111 478999999999998
Q ss_pred CCCCHhHHHhhhCC--------C---------------ccc--CcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 132 NAMNAAEITDKLGL--------H---------------SLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+....+...+.+.. . .++ ....+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76544443332221 0 011 12247889999999999999999988764
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=106.20 Aligned_cols=146 Identities=20% Similarity=0.187 Sum_probs=104.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------------------------c------------ccccCccceeEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------------------I------------VTTIPTIGFNVETVE 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------------------------~------------~~~~~t~~~~~~~~~ 57 (181)
.+..++++.+|...-||||||-||.... + .+...|+++.|..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999996421 0 123447888888888
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++.+|.+-|||||++|-..+-.....||++|+++|+ +..+.... ..+..++. -..+++.+||+|+.+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccC
Confidence 8999999999999999999888888999999999999 33332222 23333333 35689999999998753
Q ss_pred --CHhHHHhhhCC--CcccCcceEEEEecccCCCCH
Q 030187 135 --NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 135 --~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v 166 (181)
..+++...+.. ..+......+++.||..|+||
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 22233332221 111223347899999999997
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=106.00 Aligned_cols=135 Identities=26% Similarity=0.449 Sum_probs=102.1
Q ss_pred ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc----------cHHHHHHHHHHHhcCC
Q 030187 45 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNED 114 (181)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (181)
..+|.|+....+..++..+.++|++||..-+..|.+.+.+++++++|+++++-+ ...+....+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 356889999999999999999999999999999999999999999999986422 3444556777888888
Q ss_pred CCCCCeEEEEEeCCCCCCC-----------------CCHhHH----HhhhCCCc-ccCcceEEEEecccCCCCHHHHHHH
Q 030187 115 ELRDAVLLVFANKQDLPNA-----------------MNAAEI----TDKLGLHS-LRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
...+.++++++||.|+..+ ...++. ...+.... ...+.+..+.|+|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8889999999999998642 111111 11111111 1114566777899999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
..+.|..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9887764
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=105.73 Aligned_cols=78 Identities=29% Similarity=0.396 Sum_probs=53.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-------cccCccceeEEEEE--------------------EcCEEEEEEEcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVE--------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~~--------------------~~~~~~~i~D~~G 70 (181)
++|+++|.|++|||||+|+|.+.... +..|+.+....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999876542 22344443221100 1236789999999
Q ss_pred CC----Cccccccc---cccCccEEEEEEECC
Q 030187 71 QD----KIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 71 ~~----~~~~~~~~---~~~~~d~~ilv~d~~ 95 (181)
.. +...+... .++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 33333333 388999999999986
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-15 Score=91.96 Aligned_cols=137 Identities=21% Similarity=0.239 Sum_probs=91.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCC----CCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+++++|..|+|||||++.+.+...... .|-.+ ++.+ =-.+||||. .++..........+|.+++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk-KTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK-KTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc-cccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 799999999999999999998764321 12111 1111 125799993 34444445556789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
+++++- +...+..+ ...|+|-+++|.|++++...+...+.+-.-.++ ++|++|+.++.|++++++.|.
T Consensus 75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence 877542 11222222 234599999999999765554444333222222 688999999999999999886
Q ss_pred H
Q 030187 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=107.10 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=70.1
Q ss_pred EEEEEEEcCCCCCc-----cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 61 ISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 61 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+.++||||-... .......+..+|++++|+|+...-+... ..+.+.+.... .+.|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 34789999996432 2234457889999999999976433322 22333333321 1359999999999865322
Q ss_pred --HhHHHhhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 --AAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 --~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+.+..... +.........+|++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 233322211 0000111235889999999999999999876
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-14 Score=103.18 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCCccccccccc--------cCccEEEEEEECCC---cccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+.++|||||.++...+.... ...-++++++|+.. +..|-+.. ....-..+ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 699999999987765544333 34557888999763 33342222 22222333 4799999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCCcccCcce-EEEEecccCCCCHHHHHHHHHHHh
Q 030187 130 LPNAM---------N-----------AAEITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 130 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+.+.. + ...+.+.+.......... .++.+|+++++|+++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98721 0 111111111111111223 688999999999999999887654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-14 Score=105.50 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=98.4
Q ss_pred HHHHhhh--ccCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCc-------------------ccee-EEE-
Q 030187 7 KLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPT-------------------IGFN-VET- 55 (181)
Q Consensus 7 ~~~~~~~--~~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t-------------------~~~~-~~~- 55 (181)
.++++.. ....+.|.|.|+||+|||||++.+... .. ....|+ .... +..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~ 123 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRP 123 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEe
Confidence 4444443 356789999999999999999987421 00 000010 0000 111
Q ss_pred --------------------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCC
Q 030187 56 --------------------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 56 --------------------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~ 115 (181)
.+..++.+.++||+|..+.... ....+|.++++.+....+.++.......++.
T Consensus 124 ~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a---- 196 (332)
T PRK09435 124 SPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA---- 196 (332)
T ss_pred cCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh----
Confidence 1123577999999997744333 3556999999987555555555443232322
Q ss_pred CCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 116 LRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
-++|+||+|+....... ++...+..... .....+++.+||+++.|++++++.|.+.+.
T Consensus 197 -----DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 197 -----DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred -----heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 28999999987654322 23333332111 112247889999999999999999988653
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-14 Score=114.88 Aligned_cols=112 Identities=21% Similarity=0.099 Sum_probs=79.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC---------------Cccc----ccCccceeEE----EEEEcCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNVE----TVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~D~~G~~ 72 (181)
+..+|+++|+.++|||||+++|... .+.. ...|+..... .+++.+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999642 1111 2224433322 245677899999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+|.......++.+|++++|+|+.+.-..+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCCEEEEEEChhccc
Confidence 9988888889999999999998753222221 22222222 4677889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=114.87 Aligned_cols=140 Identities=21% Similarity=0.202 Sum_probs=89.4
Q ss_pred CChHHHHhhhhcCCcccccC---ccceeEEEEEEc------------------CEEEEEEEcCCCCCccccccccccCcc
Q 030187 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 28 ~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
++||||+..+.+.......+ |..+..+.+... .-.+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998766432221 222222222221 113899999999999888877888899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhHHHhh-------
Q 030187 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAEITDK------- 142 (181)
Q Consensus 87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~~~~~~~------- 142 (181)
++++|+|+++ ++++..+. .+.. .++|+++++||+|+..... .+...++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999975 33333222 2222 3689999999999863211 0111111
Q ss_pred ----hCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 143 ----LGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+....+ -...++++++||++|+|+++++..|..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 111111 124578999999999999999987754
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=93.94 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAA 137 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~ 137 (181)
+....++++.|..-.....+. -+|.++.|+|+.+.++... .....+. ..=++++||+|+.+. ...+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi~------~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGIT------RSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHhh------hccEEEEEhhhccccccccHH
Confidence 356778899885332222222 2688999999976544321 1111111 112899999999853 2222
Q ss_pred HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+.+..... ..+.+++++||++|+|++++++++.+.+.-|
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~~ 198 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALLK 198 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 222222211 1245789999999999999999999877654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=104.79 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=105.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC--------------------C--c------------ccccCccceeEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG--------------------E--I------------VTTIPTIGFNVETVE 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~--------------------~--~------------~~~~~t~~~~~~~~~ 57 (181)
...+.+++++++|+..+|||||+.++... + + +....|..+....|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34457789999999999999999999531 0 0 012224444445577
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHH------HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR------DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~------~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.....+.++|+||+..|...+......||+.++|+|++. ..|+.-. .....+++... -..++|++||+|..
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccccc
Confidence 777899999999999999999999999999999999873 2332221 12222333322 34589999999988
Q ss_pred CCC--CHhHHHhhhC-----CCcccCcceEEEEecccCCCCHHH
Q 030187 132 NAM--NAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+.. ..+++...+. ...+....+.|++||+..|+|+-.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 753 3334444333 223344566899999999999744
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=96.21 Aligned_cols=118 Identities=10% Similarity=0.111 Sum_probs=75.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCccc---c-------cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WR 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~~ 79 (181)
....++|+++|.+|+|||||+|.+.+...... ..|...........+..+.+|||||-..... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 34679999999999999999999998764321 2244444444555678999999999664421 0 11
Q ss_pred cccc--CccEEEEEEECCCc-ccHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 80 HYFQ--NTQGLIFVVDSNDR-DRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 80 ~~~~--~~d~~ilv~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.++. ..|++++|..++.. .... .+...+.+.+....+ .++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~--~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIW--RNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhH--hCEEEEEeCCccCCC
Confidence 2222 46788888765532 1222 333444444432221 469999999998654
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=105.84 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=106.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCC----Ccccccc-----cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQD----KIRPLWR-----HY 81 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~-----~~ 81 (181)
....-+++++|-|++|||||+|.+...... ...+|.++-...+++.-..++++||||-- +-++... ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 445679999999999999999988766532 11224444444455566789999999932 1122211 11
Q ss_pred ccCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+--.+|+|+.|++..| |.......+..+-- -..+.|.|+|+||+|...++...+-.+++-.......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22345799999998655 55666665655422 225789999999999987765443333222111222346899999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
+.+.+||.++-....+.+.
T Consensus 323 ~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ccchhceeeHHHHHHHHHH
Confidence 9999999887776666543
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-13 Score=100.66 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=110.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC--ccc-----------------ccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
--+|+++-+...|||||+..|.... +.. ...|+-..-..+.+.+..++++|||||.+|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999996532 211 111222223457788899999999999999998
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CC--cccCcc
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LH--SLRQRH 152 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~--~~~~~~ 152 (181)
....+.=.|++++++|+.+. ......-.+...+. .+.+-|+|+||+|.++.-..+-+.+.+. .. .-.+.+
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 88888889999999999743 33333444455555 3666788999999988643332222221 11 124567
Q ss_pred eEEEEecccCC----------CCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSG----------EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~----------~~v~~~~~~l~~~l~~ 179 (181)
+|++-.|+..| .++.-+|+.|++.+..
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 88888998874 4578888888887754
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=95.62 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=104.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc--------cc---------cCcccee-----------------EE---
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--------TT---------IPTIGFN-----------------VE--- 54 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--------~~---------~~t~~~~-----------------~~--- 54 (181)
...++++.|+|+|..|||||||++||...-.. .. ...++++ -.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 45567899999999999999999999532100 00 0011110 00
Q ss_pred -------EE---------EEcCEEEEEEEcCCCCCccc-------cccccc-cCccEEEEEEEC---CCcccHHHHHHHH
Q 030187 55 -------TV---------EYKNISFTVWDVGGQDKIRP-------LWRHYF-QNTQGLIFVVDS---NDRDRVVEARDEL 107 (181)
Q Consensus 55 -------~~---------~~~~~~~~i~D~~G~~~~~~-------~~~~~~-~~~d~~ilv~d~---~~~~s~~~~~~~~ 107 (181)
.+ ........++|||||-+... +...+. ...-+++|++|. +++-+|.+...+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 00 01235688999999753211 111111 225578889985 3566787777777
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-------CC---Ccc------------c-CcceEEEEecccCCC
Q 030187 108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-------GL---HSL------------R-QRHWYIQSTCATSGE 164 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-------~~---~~~------------~-~~~~~~~~~Sa~~~~ 164 (181)
..+++. .+.|++++.||+|+.+.....++...+ .. ... + .++...+.+||.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 777776 578999999999999865443332222 10 000 0 145678899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|.+++|..+.+.+.
T Consensus 251 G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 GFDDFFTAVDESVD 264 (366)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887765
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-13 Score=95.78 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=82.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.....|+++|++|+|||||++.+.+..... .....+. .......+..+.++|+||+. .. .....+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 455789999999999999999997652111 1111111 12233356788999999864 22 2234578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhh----hCCCcccCcceEEEEecccCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++...... ...+...+.. .+.| +++++||+|+.+... .+++... +..... .+.+++.+||+++-
T Consensus 113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCC
Confidence 87543322 2223333332 3456 456999999874321 2222222 221111 23478899998863
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-13 Score=96.56 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=115.0
Q ss_pred HHHHHhhhcc------CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE----cCEEEEEEEcCCCCCcc
Q 030187 6 TKLFSRLFAK------KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIR 75 (181)
Q Consensus 6 ~~~~~~~~~~------~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~ 75 (181)
+.+++....+ ..-+|+|+|+.|+||||||.+|.+.+........+..+-.+.. +..++.+|-..|+....
T Consensus 35 s~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~ 114 (473)
T KOG3905|consen 35 SEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHK 114 (473)
T ss_pred HHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhh
Confidence 4455554444 3368999999999999999999998855555555555544433 23678899999988777
Q ss_pred ccccccccC---c-cEEEEEEECCCcccHHHHHHHHHHHhcCC-------------------------------------
Q 030187 76 PLWRHYFQN---T-QGLIFVVDSNDRDRVVEARDELHRMLNED------------------------------------- 114 (181)
Q Consensus 76 ~~~~~~~~~---~-d~~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------------------------- 114 (181)
.+.+..+.- + -.+|++.|.++++.+-...+.|..++.+.
T Consensus 115 ~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~ 194 (473)
T KOG3905|consen 115 GLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQ 194 (473)
T ss_pred hHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 776655443 2 36788999999976655555444443310
Q ss_pred ------------------------CCCCCeEEEEEeCCCCCCCC---------C---HhHHHhhhCCCcccCcceEEEEe
Q 030187 115 ------------------------ELRDAVLLVFANKQDLPNAM---------N---AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 115 ------------------------~~~~~piivv~nK~D~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..-++|++||+||+|..... . ++...+.+.+ .++...+.+
T Consensus 195 ~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL----r~GaaLiyT 270 (473)
T KOG3905|consen 195 RRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL----RYGAALIYT 270 (473)
T ss_pred cccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH----HcCceeEEe
Confidence 00267899999999984321 1 1111122222 356678889
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|+|...|++-+..+|++.+.
T Consensus 271 SvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 271 SVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ecccccchHHHHHHHHHHhc
Confidence 99999999999999998764
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=97.85 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=90.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCCCccc--------c---cccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------L---WRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~ 81 (181)
++|+++|.+|+||||++|.+.+...... ..|...........+..+.++||||-.+... + ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998774322 2255555556677889999999999432111 1 1123
Q ss_pred ccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CC-cccCcceEEE
Q 030187 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LH-SLRQRHWYIQ 156 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 156 (181)
....|++++|+.+... +.-.....++..++....+ ..++++.|..|.......++..+... +. ..+.++-.|+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 4568999999998722 1123333455555554332 35888899998776655433322110 01 1111222233
Q ss_pred Eeccc------CCCCHHHHHHHHHHHhh
Q 030187 157 STCAT------SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~Sa~------~~~~v~~~~~~l~~~l~ 178 (181)
..+.+ +...+.++++.+-+++.
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 33333 34567888877766654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=102.40 Aligned_cols=131 Identities=25% Similarity=0.421 Sum_probs=96.8
Q ss_pred CccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCC
Q 030187 47 PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 47 ~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (181)
+|.|+....+.. .+..+.++|++|+...+..|..++.+++++|+|+++++ ...+.+....+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 367777778888 88999999999999999999999999999999999752 1357777888999999888
Q ss_pred CCCCeEEEEEeCCCCCCC--------------------CCHhHHHh----hhCCCcccC---cceEEEEecccCCCCHHH
Q 030187 116 LRDAVLLVFANKQDLPNA--------------------MNAAEITD----KLGLHSLRQ---RHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~--------------------~~~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~~v~~ 168 (181)
..+.|+++++||.|+... ...+.+.. .+....... +.+.++.|+|.+-.++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 889999999999997421 11122211 111111111 556777899999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.+.+.|
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999887754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=93.69 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=72.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-------ccccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF 82 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~ 82 (181)
..+.++|+++|.+|+||||++|++.+..... ..+ +...........+..+.+|||||..+.... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999876321 111 122222333457789999999996643221 11111
Q ss_pred --cCccEEEEEEECCC--cccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 --QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 --~~~d~~ilv~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...|++++|..++. .... ..+...+.+.+.... -.+++++.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 25899999965542 2212 223333444443222 246899999999763
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=94.03 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=94.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccC---------------------ccceeEEEE---------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIP---------------------TIGFNVETV--------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~---------------------t~~~~~~~~--------- 56 (181)
.+.+.|.+.|+||+|||||++.|... +. ....| ..+......
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 36789999999999999999999531 00 00000 011111111
Q ss_pred -----------EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 57 -----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 57 -----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+-.++.+.+++|.|--+...... .-+|.+++|..+.-.+..+.+...+.++.. ++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---DMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---TTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---HhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence 11357799999998655443333 449999999999888888999888888866 8999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCC--cccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 126 NKQDLPNAMN-AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 126 nK~D~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
||.|...... ..++...+.+. .......+++.|||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 9999554321 22333333321 122334689999999999999999998874
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=97.32 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=111.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.|+..|+-..|||||+..+.+.... ....|+++.++..+.++..+.++|+||++++-...-..+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778899999999999999876532 3455888888888877789999999999999988888888999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++. +......-..++... .....++|+||+|..+....++..+....... ..+.++|.+|+++|.|++++-+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99532 222222111222221 12346999999999986544444333321111 34456799999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 98876
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=109.16 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=79.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc------------cc-------ccCccceeEEEEEE----------------c
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEY----------------K 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------~~-------~~~t~~~~~~~~~~----------------~ 59 (181)
.+-.+|+|+|+.++|||||+++|....- .+ ...|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3556999999999999999999964320 00 11122222222322 2
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+..++++|||||.+|.......++.+|++|+|+|+.+.-..+.. ..|..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECCccc
Confidence 57889999999999998888888999999999998755332322 23444444 578999999999987
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=93.44 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=73.5
Q ss_pred CCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...+++++|.+++|+|+.+++ ++..+..|+..... .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 778888888999999999999999887 88888887765432 578999999999996532221 222222 1
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHH
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..+++++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567899999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=108.59 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=78.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--c----------cc-------ccCccceeEEEEEEc----------CEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------VT-------TIPTIGFNVETVEYK----------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~-------~~~t~~~~~~~~~~~----------~~~~~i 65 (181)
++..+|+++|+.++|||||+++|.... . .+ ...|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 344699999999999999999997521 1 00 011222222223332 567999
Q ss_pred EEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+||||+.+|.......++.+|++++|+|+.+.-..+. ...|..... .++|+++++||+|..
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888888899999999999875422222 233444433 468999999999987
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=89.14 Aligned_cols=159 Identities=23% Similarity=0.287 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc---ccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~il 90 (181)
.+|+++|...+||||+..-...+- ..-..+|..+....+...-++|++||.|||..+... ..+.++.+.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999976554432 222334444444444445588999999999866544 3567889999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCH--------hHHHhhhCCCcccCcceEEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNA--------AEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+|+. +.+.+....+...... +-.+++.+-+.++|.|....+.. +...+.+.-.......+.|+.||-
T Consensus 108 vIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99984 3355555444444433 23378899999999998764321 222233333444556778998998
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
.+ ..+-|+|..++++|..
T Consensus 186 yD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred cc-hHHHHHHHHHHHHHhh
Confidence 87 5699999988887754
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=102.58 Aligned_cols=154 Identities=22% Similarity=0.195 Sum_probs=103.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-----cccCccceeEEEEE----------------EcCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVE----------------YKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 74 (181)
++.-++|+|+..+|||-|+..+.+...- +....++.+++... ..---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 5678999999999999999999764321 11223333332211 11124789999999999
Q ss_pred cccccccccCccEEEEEEECC---CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------CCH---------
Q 030187 75 RPLWRHYFQNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNA--------- 136 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~~~--------- 136 (181)
.+++......||.+|+|+|+. ++.+++++ .+++. ++.|+|+.+||+|.... ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 999999999999999999985 34444433 22333 68999999999997541 000
Q ss_pred ----------hHHHhhhCCCc------cc----CcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 137 ----------AEITDKLGLHS------LR----QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 137 ----------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
..+.-++.-.. ++ ..-+.+++|||.+|+||-+++-.|++.-
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 01111111111 11 1236789999999999999999888753
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=96.71 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=105.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE--c----CEEEEEEEcCCCCCccccccccccCc----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--K----NISFTVWDVGGQDKIRPLWRHYFQNT---- 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~--~----~~~~~i~D~~G~~~~~~~~~~~~~~~---- 85 (181)
..-.|+|+|..++|||||+.+|.+.+- ..++.+..|...+. + ..++.+|...|...+..+.+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 346999999999999999999987653 33455555544433 1 25789999999888887776655532
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcC--------------------------------C-------------------
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNE--------------------------------D------------------- 114 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~--------------------------------~------------------- 114 (181)
-.+++|.|.+.|+.+.+....|..+++. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 3688899999998765433322222110 0
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCC--------CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 115 -----------ELRDAVLLVFANKQDLPNAM--------NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 115 -----------~~~~~piivv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..-++|++||++|+|..... ...++....-+...-.++...+.||++...+++.+..+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 00147999999999974311 11111111111112246667888999999999999999988
Q ss_pred Hhh
Q 030187 176 NIA 178 (181)
Q Consensus 176 ~l~ 178 (181)
.+.
T Consensus 262 ~l~ 264 (472)
T PF05783_consen 262 RLY 264 (472)
T ss_pred Hhc
Confidence 775
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=93.33 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCccceeEEEEE--Ec--CEEEEEEEcCCCCCc-------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVE--YK--NISFTVWDVGGQDKI------- 74 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~------- 74 (181)
.++|+|+|.+|+|||||+|.|++...... ..+..+...... .. .+++.++||||-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999988653321 123333333332 22 368899999992211
Q ss_pred -----------cc--------c-ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 -----------RP--------L-WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 -----------~~--------~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.. . ....-.+.|+++|+++++. .++..+.-..+.-+. ...++|.|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 00 0 1112235799999999873 345555555555555 468899999999987654
Q ss_pred CH
Q 030187 135 NA 136 (181)
Q Consensus 135 ~~ 136 (181)
+.
T Consensus 159 el 160 (281)
T PF00735_consen 159 EL 160 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-13 Score=85.83 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc--CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+||+++|..|+|||+|+.++....+.... +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 58999999999999999999776664211 2322 3333455678899999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+.+++... |...+... ....+|.++++||.|+.+.. .+.+.... .++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence 88888665 44433332 23568899999999974321 11111111 35688999999985
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=89.48 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=78.2
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-Hh
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AA 137 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~ 137 (181)
.++.+.+++|.|--+...... .-+|.+++|.-+.-.+..+.....+.++.. ++|+||.|....+. ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHH
Confidence 356799999998665554332 349999999988778889999998888866 89999999655421 22
Q ss_pred HHHhhhCCC----cccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 138 EITDKLGLH----SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 138 ~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++...+.+. .......+++.|||..|+|++++++.+.+..
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 333333322 2234556899999999999999999998764
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-12 Score=88.03 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=87.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCC---cc----ccc-----C-----ccceeEEE-----------------
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE---IV----TTI-----P-----TIGFNVET----------------- 55 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~----~~~-----~-----t~~~~~~~----------------- 55 (181)
....+.....|.++|+.|+|||||++++.... .. ... . ..+.....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 34555667899999999999999999996431 00 000 0 00001100
Q ss_pred ---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 56 ---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 56 ---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....+..+.++++.|.-.... .+.-..+..+.|+|+.+.+....... .. ...|.++++||+|+.+
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~~~---~~------~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLKYP---GM------FKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhhhH---hH------HhhCCEEEEEHHHccc
Confidence 001135678888888321111 11123556667888865432111111 11 2456799999999975
Q ss_pred CCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 133 AMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
... ..++...+... ....+++++||++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 322 22333322211 1235799999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=90.35 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=64.8
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~ 139 (181)
++.+.++||+|..... ......+|.++++...... ..+......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5778999999954222 2245668888888654323 3333322222 24667999999998765432221
Q ss_pred Hhhh----C-C-CcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 140 TDKL----G-L-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 140 ~~~~----~-~-~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
...+ . . ........+++.+||+++.|++++++++.+.+
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 1 0 10111223588999999999999999998764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=93.71 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=81.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccCc----cceeEEEEEEcC-EEEEEEEcCCCCCccccc-----cc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPT----IGFNVETVEYKN-ISFTVWDVGGQDKIRPLW-----RH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t----~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~-----~~ 80 (181)
.....++|+|+|++|+|||||||.|.+-...+ ..+| .......+...+ -++.+||.||........ ..
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 34567999999999999999999997633211 1110 111222333333 469999999953222111 23
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhh---hC---C
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDK---LG---L 145 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~---~~---~ 145 (181)
.+...|.+|++.+- .|.....++...++. .++|+.+|-||+|.. ..-..+++.+. .. +
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 35678988887753 577777777766665 588999999999951 01111111111 00 1
Q ss_pred CcccCcceEEEEecccC--CCCHHHHHHHHHHHhh
Q 030187 146 HSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l~~~l~ 178 (181)
........++|-+|+.+ ..+...+.+.|.+-|.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11112334677888876 4557777777766554
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-12 Score=103.64 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=76.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--c----------cc-------ccCccceeEEEEEE----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--I----------VT-------TIPTIGFNVETVEY----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~-------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~ 72 (181)
+.-+|+++|+.++|||||+.+|.... . .+ ...|+......+.+ .+..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 44689999999999999999996421 0 00 01123322222222 46889999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+|.......++.+|++++|+|+...-..+ ....|..... .+.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 99888888889999999999987542222 2223333223 2467799999999763
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-12 Score=91.78 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=104.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEE--------------------EEEEc------CEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVE--------------------TVEYK------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~--------------------~~~~~------~~~ 62 (181)
+..++|.++|+...|||||...|.+--.. ....|+..-|. ..... -..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56799999999999999999999763211 01111111110 00100 145
Q ss_pred EEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----
Q 030187 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---- 138 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~---- 138 (181)
+.+.|.|||+-.-+.+.+...--|++++|+.+++++.-....+-+..+--- .-..++++=||+|+.+.+...+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 789999999866555555555579999999999777654544444332111 1345889999999998643332
Q ss_pred HHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+.+..+- .-..+.+++++||..+.|++-+++.|.+.+..
T Consensus 165 Ik~FvkG--t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKG--TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhcc--cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3222221 22346689999999999999999999988753
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=86.64 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=94.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEE-cCEEEEEEEcCCCCCcc-----ccccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----PLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d 86 (181)
.-||+++|.+|+||||+=.-+..+. .....+|+++.-..+.. +++-+++||.+|++.+- ......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4689999999999998754444332 33556677776655555 45889999999998432 23456788999
Q ss_pred EEEEEEECCCcccHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEEecc
Q 030187 87 GLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQSTCA 160 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa 160 (181)
++++|||+...+-...+. ..+..+++. .+...+....+|+|+......+.+.+... ...-.+..+.++++|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999997543222222 222333332 25667888899999987544333222111 1111234466777777
Q ss_pred cCCCCHHHHHHHHH
Q 030187 161 TSGEGLYEGLDWLS 174 (181)
Q Consensus 161 ~~~~~v~~~~~~l~ 174 (181)
.+. .+-.++..++
T Consensus 162 wDe-tl~KAWS~iv 174 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIV 174 (295)
T ss_pred hhH-HHHHHHHHHH
Confidence 663 2333344433
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=92.22 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=93.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc--CC--------------cc---------cccCccceeEEEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL--GE--------------IV---------TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~--~~--------------~~---------~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 71 (181)
+-+.+||-+|.+|||||..+|.- +. .. +...++......+++.+..+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34678999999999999999842 11 00 1222444556778889999999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (181)
++|..-...-+.-+|.+++|+|+.. .++.....+.++.+. +++||+-++||.|....... .++.+.+++..+
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cccchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 9999887777777999999999953 344444555555554 78999999999998776544 466666666544
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=95.98 Aligned_cols=116 Identities=19% Similarity=0.142 Sum_probs=86.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcC-EEEEEEEcCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKN-ISFTVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~ 71 (181)
..+.-+|.++|+..+||||+..++.... +. ...-|+.....++.+.+ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456799999999999999999995321 11 11224444556677784 99999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.+|.......++-+|+++.|+|+.+.=.. .....|.+..+ .++|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence 99999999999999999999999643221 22234444444 489999999999987653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=80.17 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=42.2
Q ss_pred EEEEEEcCCCC----CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 62 SFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+.++|+||.. .....+..+++.+|++++|.+++...+-..... +.+.... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 48999999953 233557788899999999999987555443333 3333333 233489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-10 Score=85.89 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=104.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
..++.++..|+|+.++|||.+++.+.++.+... .+...++...+....-.+.+-|.+-. ....+...- ..||.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 344668999999999999999999999776531 12222333333444455667777754 222222222 66999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++||++++.+|.-....+...... ...|+++|++|.|+... ....+.++++++. +-+..|++.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCC
Confidence 99999999999999888877666554 68999999999998653 2336777777765 223457664
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
... .++|..|..+-
T Consensus 569 ~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 569 LSS-NELFIKLATMA 582 (625)
T ss_pred CCC-chHHHHHHHhh
Confidence 333 88888887654
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=83.46 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=80.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc--------ccccCc---------cceeEEE-------------------
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPT---------IGFNVET------------------- 55 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~--------~~~~~t---------~~~~~~~------------------- 55 (181)
+.....+-|.++|+||+|||||++++.+.-. .....| .+.....
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 4455678999999999999999988864310 000000 0001111
Q ss_pred -EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 56 -VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 56 -~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+...+..+.++++.|.-..-... .. . .+.-+.++++...+.. .. .+-.+ -..+-++++||+|+....
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~f-dl-g-e~~~v~vlsV~eg~dk--pl-Kyp~~------f~~ADIVVLNKiDLl~~~ 246 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASF-DL-G-EKHKVAVLSVTEGEDK--PL-KYPHM------FAAASLMLLNKVDLLPYL 246 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCcc-ch-h-hceeEEEEECcccccc--ch-hccch------hhcCcEEEEEhHHcCccc
Confidence 11123456677777641111100 00 1 2223456666533110 00 11111 134569999999997532
Q ss_pred --CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 135 --NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
..+.+.+.+... ....+++++||++|+|+++++++|.++.
T Consensus 247 ~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 247 NFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred HHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 233333322111 1345799999999999999999998743
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=85.86 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=94.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC----cc------cccCccceeEEEEEE---------cCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE----IV------TTIPTIGFNVETVEY---------KNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~----~~------~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~~ 76 (181)
..+++.++|+..||||||..++..-. +. +...|.+..+..+.. ....+.++|+|||.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 45899999999999999999996432 11 222233333333222 347789999999997766
Q ss_pred cccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhC--CCccc
Q 030187 77 LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLG--LHSLR 149 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~--~~~~~ 149 (181)
.......-.|..++|+|+... ++-..-...+-+++. ...++|+||.|...+. ..++...... +....
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 666666778999999998633 221111122233322 2367888888865432 2222222111 11111
Q ss_pred C-cceEEEEecccCC----CCHHHHHHHHHHHhh
Q 030187 150 Q-RHWYIQSTCATSG----EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~-~~~~~~~~Sa~~~----~~v~~~~~~l~~~l~ 178 (181)
- .+.|++++||++| +++.|+.+.|-..+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 1 2368999999999 556666555555443
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=76.69 Aligned_cols=146 Identities=20% Similarity=0.171 Sum_probs=81.6
Q ss_pred cCc-ceEEEEcCCCCChHHHHhhhhcC---Ccc---------c-cc-----CccceeEEEEEE-----------------
Q 030187 15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIV---------T-TI-----PTIGFNVETVEY----------------- 58 (181)
Q Consensus 15 ~~~-~~i~v~G~~~~GKssli~~l~~~---~~~---------~-~~-----~t~~~~~~~~~~----------------- 58 (181)
++. +.|.|.|++|||||+|+.+++.. ++. + .. .+.+.....++.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 344 79999999999999999988542 110 0 00 001211111111
Q ss_pred -----cCEEEEEEEcCCCCCccccccccccCcc-EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....+.+++..|.- ..... +.-.| .-|+|+|++..+-...= ....... .=++|+||.|+..
T Consensus 90 l~~~~~~~Dll~iEs~GNL--~~~~s--p~L~d~~~v~VidvteGe~~P~K--------~gP~i~~-aDllVInK~DLa~ 156 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNL--VCPFS--PDLGDHLRVVVIDVTEGEDIPRK--------GGPGIFK-ADLLVINKTDLAP 156 (202)
T ss_pred HhhcCCcCCEEEEecCcce--ecccC--cchhhceEEEEEECCCCCCCccc--------CCCceeE-eeEEEEehHHhHH
Confidence 12456777777721 11111 11133 78889998754321100 0111111 3489999999987
Q ss_pred CCCH--hHHHh-hhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 133 AMNA--AEITD-KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.... +-+.+ .... ..+.+++.+|+++|+|++++++++....
T Consensus 157 ~v~~dlevm~~da~~~----np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 157 YVGADLEVMARDAKEV----NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HhCccHHHHHHHHHHh----CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5433 22211 1111 1344799999999999999999987654
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=83.71 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=77.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEEEE--c--CEEEEEEEcCCCCCc-----
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY--K--NISFTVWDVGGQDKI----- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~----- 74 (181)
.-.++|+++|+.|+|||||+|+|++..... ..+++.+....... + .++++++||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 456899999999999999999998764221 23455555544333 2 378899999992111
Q ss_pred -------------cc--------cc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 75 -------------RP--------LW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 75 -------------~~--------~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.. .+ ...=.++|+++|.+.++ +..+..+.-..+.-+. ...-+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 00 01 11123578999999877 5566666655555555 356689999999987
Q ss_pred CCCC
Q 030187 132 NAMN 135 (181)
Q Consensus 132 ~~~~ 135 (181)
...+
T Consensus 176 T~~E 179 (373)
T COG5019 176 TDDE 179 (373)
T ss_pred CHHH
Confidence 6543
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=81.48 Aligned_cols=160 Identities=20% Similarity=0.124 Sum_probs=100.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC-------C---cc--c-------ccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~-------~---~~--~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|..+|+...|||||...+... . +. . ...|+...-..++..+..+--.|+|||.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 357799999999999999998777421 1 11 1 122444444556667788999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
-..+....-+.|+.|+|+.+++.---+.....+ +.++. --+.+++++||+|+.+..+.. ++.+.+..-.+.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 988877778899999999987632111111111 11111 123578888999999853322 233333444444
Q ss_pred CcceEEEEecccC-CC-------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATS-GE-------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~-~~-------~v~~~~~~l~~~l 177 (181)
..+.|++.-||.. .+ .+.|+++.+-+.+
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 5567888777764 22 2455555555444
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=83.43 Aligned_cols=159 Identities=17% Similarity=0.169 Sum_probs=89.6
Q ss_pred HHHhhhcc--CcceEEEEcCCCCChHHHHhhhhcC----Ccc-------------c--cc---CccceeE---EEEE---
Q 030187 8 LFSRLFAK--KEMRILMVGLDAAGKTTILYKLKLG----EIV-------------T--TI---PTIGFNV---ETVE--- 57 (181)
Q Consensus 8 ~~~~~~~~--~~~~i~v~G~~~~GKssli~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~--- 57 (181)
++.....+ -.+-|+|+|+.++|||||+|+|.+. ... . .. .|.+..+ ..++
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 34444444 3488999999999999999999875 211 1 11 1222222 1122
Q ss_pred --EcCEEEEEEEcCCCC--------Cccc-----------c----------cccccc-CccEEEEEE-ECC----CcccH
Q 030187 58 --YKNISFTVWDVGGQD--------KIRP-----------L----------WRHYFQ-NTQGLIFVV-DSN----DRDRV 100 (181)
Q Consensus 58 --~~~~~~~i~D~~G~~--------~~~~-----------~----------~~~~~~-~~d~~ilv~-d~~----~~~s~ 100 (181)
.-+.+++++||+|.. +-.. . ....++ +++..++|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 234789999999931 1111 0 223344 789999888 764 23445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc--CCCCHHHHHHHHH
Q 030187 101 VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT--SGEGLYEGLDWLS 174 (181)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~l~ 174 (181)
......+.+.++. .++|+++++||.|-...+ ..++...+. +.++++++.+|+. +...+..+++.+.
T Consensus 166 ~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 166 VEAEERVIEELKE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred hHHHHHHHHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 5555544444444 589999999999943322 222222221 1123345555544 4555666666544
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-10 Score=88.18 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=71.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCcc-------cc---ccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHYF 82 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~ 82 (181)
.++|+++|.+|+||||++|.|.+...... ..|...........+..+.++||||-.... .+ ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 46899999999999999999998763211 223333333334467889999999965431 11 11222
Q ss_pred c--CccEEEEEEECCCcccH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 Q--NTQGLIFVVDSNDRDRV---VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 ~--~~d~~ilv~d~~~~~s~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
. .+|++++|..++..... ......+.+++....+ ..+||+.|+.|...
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 2 47999999877532221 1233444444443222 34899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=82.18 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=76.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc----------cCccceeEEEEEE--c--CEEEEEEEcCCCCC-------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDK-------I 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~-------~ 74 (181)
-.|+++++|++|.|||||+|+|+...+... ..|..+....+.. + .++++++||||-.+ +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999987754322 1144454444443 2 36788999999211 1
Q ss_pred c------------------cccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 R------------------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~------------------~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+ .+....+. ++|+++|.+.++ ...+..+.-..+.-+. ....+|-|+.|.|...+.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 1 01111222 689999999876 4455666665555555 467789999999987653
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=74.75 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCCc-------------cccccccccC-ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 61 ISFTVWDVGGQDKI-------------RPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 61 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
..+.++|+||.... ..+...|+++ .+.+++|+|+...-.-+.. ..+.+.+.. .+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH---cCCcEEEEEE
Confidence 56999999997421 1234566774 4588888887532111111 122222221 4688999999
Q ss_pred CCCCCCC
Q 030187 127 KQDLPNA 133 (181)
Q Consensus 127 K~D~~~~ 133 (181)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=82.45 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=55.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 74 (181)
.+..+|+++|.||+|||||+|.|.+.... . ...|+..+...+... ...+.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46689999999999999999999765532 1 112334444334332 235899999995422
Q ss_pred c-------ccccccccCccEEEEEEECC
Q 030187 75 R-------PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 ~-------~~~~~~~~~~d~~ilv~d~~ 95 (181)
. ......++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12334568899999999974
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-10 Score=87.19 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=77.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc----------------C----ccceeEEE-----EEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI----------------P----TIGFNVET-----VEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~----t~~~~~~~-----~~~~~~~~~i~D~~G 70 (181)
+..+++++|+-++|||+|+..|.....++-. . ++..+-.+ .+.+.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4468999999999999999999754322110 0 11111111 122457799999999
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|..|.......++-+|++++|+|+.+.=.++.-+. +....+ .+.|+++|+||.|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHHh----ccCcEEEEEehhHHH
Confidence 99999999999999999999999965434333222 222222 578999999999963
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-10 Score=87.34 Aligned_cols=155 Identities=17% Similarity=0.277 Sum_probs=112.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE---EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...|+.|+|..++|||+|++++..+.+.....+.+-.+ ..+...+..+.+.|.+|.... .|..-+|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence 45799999999999999999999998876666555443 234456677888888884432 2345599999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
...+..+|+.+......+..+..-..+|.++++++.-..... ....-...+. .....+.+|++++..|.++..+
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence 999999999999888777766555678889998876443211 1111111111 1223457899999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+.+..++.
T Consensus 181 f~~~~~k~i 189 (749)
T KOG0705|consen 181 FQEVAQKIV 189 (749)
T ss_pred HHHHHHHHH
Confidence 998887654
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.7e-10 Score=83.14 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=104.3
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC----------------------------------CcccccCccceeEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG----------------------------------EIVTTIPTIGFNVETVE 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~----------------------------------~~~~~~~t~~~~~~~~~ 57 (181)
.+++.+++++++|+..+||||+-.++... +-.....|++.....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34578899999999999999998888431 00122346666667788
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.....|.+.|+|||..|-..+.....+||.-++|+++...+ .|+.--+.-....-.....-...++++||+|.+..+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 88889999999999999998888889999999999874211 222211111111001111235689999999987643
Q ss_pred CHhHHHh----hh----C-CCcccCcceEEEEecccCCCCHHHHH
Q 030187 135 NAAEITD----KL----G-LHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 135 ~~~~~~~----~~----~-~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
...+... .+ . +......+..|+++|..+|.++++..
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 2222211 11 1 11122345679999999999988754
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-10 Score=80.66 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=51.3
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc----
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR---- 75 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~---- 75 (181)
|+++|.|++|||||+|.|.+.... . ...|+......+...+ ..++++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999887642 1 1224444444444332 258999999954221
Q ss_pred c---cccccccCccEEEEEEECC
Q 030187 76 P---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 ~---~~~~~~~~~d~~ilv~d~~ 95 (181)
. .....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2334467899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.6e-09 Score=77.32 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=96.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-------------------cccCccceeEEEEEE----------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVEY---------------- 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~~---------------- 58 (181)
...++.+.+.|+.++|||||.-.|..+... ...+.+.+..+.|+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 457789999999999999999999754421 112223333333322
Q ss_pred -----cCEEEEEEEcCCCCCccccc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+--+.+.|+.||+.|.... .-.-+..|..++++.+++.-+ .+.. +.+...---..|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tk---EHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTK---EHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhh---HhhhhhhhhcCCEEEEEEecccC
Confidence 12347899999999887543 344567999999999875422 2221 11111111478999999999998
Q ss_pred CCCCHhHHHhhh-------CC-----------------CcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 132 NAMNAAEITDKL-------GL-----------------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 132 ~~~~~~~~~~~~-------~~-----------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
..+..+.+.++. +. ..+...-.|+|.+|+-+|+|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 754333222211 10 01111246899999999999876555443
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=81.44 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=63.5
Q ss_pred cccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+......+...+. ..++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeE
Confidence 3445578999999999998775 333445555443 22 5789999999999975433333333332 234468
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q 030187 156 QSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
+.+||+++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 899999999999999988653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=73.33 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=61.1
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
+.++.+..+++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+........+.... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCc
Confidence 4456677788999999999976543222 122222222 368999999999986432222211111 112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHhh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 789999999999999999987653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=80.79 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~-- 75 (181)
++|+++|.||+|||||+|.|.+.... . ...|+......+...+ ..+.++|+||-....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999886621 1 1224344433333322 358999999954321
Q ss_pred -----ccccccccCccEEEEEEECC
Q 030187 76 -----PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 -----~~~~~~~~~~d~~ilv~d~~ 95 (181)
......++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12334568899999999984
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=73.09 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G 70 (181)
..++++++|.||+|||||+|++.+.......+..+.+. ..+... ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 45899999999999999999999877544444333332 222222 3689999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=75.65 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=61.9
Q ss_pred ccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCcc
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSL 148 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~---~~~~~ 148 (181)
++..+..+++++|++++|+|++++. ++.. .+... ..++|+++|+||+|+..... ........ .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~------~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP------RLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch------hHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 5677788899999999999998653 1111 11111 14689999999999875432 22121111 00001
Q ss_pred cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
......++.+||++|.|++++++.|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 001124789999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=71.01 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=38.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEc-CEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G 70 (181)
...+|+++|.||+|||||+|+|.+.......++.+.+....... +-.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 56889999999999999999999876544444333332221111 23478999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=78.15 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=60.2
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..++|.+++|+|+.++++.......|...+.. .++|+++|+||+|+.+.. ...++...+ +..+++++.+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEeC
Confidence 58999999999998887766654444444443 578999999999996321 111222222 122457889999
Q ss_pred cCCCCHHHHHHHHHH
Q 030187 161 TSGEGLYEGLDWLSN 175 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~ 175 (181)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-09 Score=75.05 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=67.6
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+-..++..+.++|+.+|++|+..-+..|...+....++|+|+..++- ..+++....+..+..+.-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 56666777888899999999999999999999999999999999976521 24455555666666666667
Q ss_pred CCeEEEEEeCCCCC
Q 030187 118 DAVLLVFANKQDLP 131 (181)
Q Consensus 118 ~~piivv~nK~D~~ 131 (181)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 78899999999985
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=76.24 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=75.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEE---------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY--------------------------------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~--------------------------------- 58 (181)
.+.=|+++|+-..|||||++.|....++. ..||.+.-.....+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 44579999999999999999999877652 33333321110000
Q ss_pred -----cC---EEEEEEEcCCCC-----------CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030187 59 -----KN---ISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 59 -----~~---~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.+ -.++++||||-- .|......+..+||.++++||+...+--.+....+..+..+ .=
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 00 138999999932 23445677888999999999987544334444444444333 23
Q ss_pred eEEEEEeCCCCCCCC
Q 030187 120 VLLVFANKQDLPNAM 134 (181)
Q Consensus 120 piivv~nK~D~~~~~ 134 (181)
.+-+|+||.|..+++
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 478899999988763
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=67.51 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=55.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--ccc-CccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 84 (181)
.-.-+++++|-|.+|||||+..+...... .+. .|...-...+.+.+.++++.|.||--+.. ...-...+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 34469999999999999999988654311 111 11111112355678899999999832211 122345678
Q ss_pred ccEEEEEEECCCccc
Q 030187 85 TQGLIFVVDSNDRDR 99 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s 99 (181)
||.+++|.|++..+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-09 Score=75.13 Aligned_cols=133 Identities=26% Similarity=0.425 Sum_probs=89.7
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+..+.++..++.|++.|++|+..-+..|.+.+.+.-.+++++.++ +....++....+.-++...-
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 35777777778888899999999999999999999888888777766543 33445555566666666666
Q ss_pred CCCCeEEEEEeCCCCCCCCCH-----------------hHHHhhhCCC-----cccC-cceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNAMNA-----------------AEITDKLGLH-----SLRQ-RHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~~~~-----------------~~~~~~~~~~-----~~~~-~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.++|+++||.|+.++... ....+.+-+. .-.. +-+.-+.++|.+-+|+.-+|..
T Consensus 264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA 343 (359)
T ss_pred ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence 678899999999998753111 1111111110 0001 1122234788888999999988
Q ss_pred HHHHhh
Q 030187 173 LSNNIA 178 (181)
Q Consensus 173 l~~~l~ 178 (181)
..+.+.
T Consensus 344 VkDtiL 349 (359)
T KOG0085|consen 344 VKDTIL 349 (359)
T ss_pred HHHHHH
Confidence 877664
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=76.67 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=63.5
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..|+|.+++|++.....++..+..|+.... . .++|.++|+||+|+.............. .++..+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 356999999999887778888888766443 2 5788999999999976432112211111 112234578999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~ 176 (181)
++.|++++++.|...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=75.26 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred cccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... ...+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34578999999999999887 77777776655433 478999999999997542111111111 113457889
Q ss_pred ecccCCCCHHHHHHHHHH
Q 030187 158 TCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~ 175 (181)
+||+++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.6e-09 Score=75.97 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=91.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCC---------Cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~---------~~~~~~~~~~ 82 (181)
...-|.++|-+|+|||||++.|.+.... ..-.|.+.+....... +..+.+.||-|-- -|++... ..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 4568999999999999999999854432 1223444444333333 3567888999832 2333322 34
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+|.++-|.|++.|+--+.....+ ..+.+...+..| ++=|=||.|...... ..+..+ -+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e~E~n~--~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------EEEKNL--DVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccC-----------ccccCC--cccc
Confidence 6799999999999886443333332 333443333333 344556666543211 111111 3478
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|+|++++++.+-.++.
T Consensus 322 saltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccCccHHHHHHHHHHHhh
Confidence 99999999999998877654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=67.91 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=36.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccc--eeEEEEEEcCEEEEEEEcCCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~ 71 (181)
+++++|.+|+|||||+|++.+........+.+ .....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999877543222222 2222333333 6799999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=79.69 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=81.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----c---c-------------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
+.-+|.++-+-.+||||+.++..... + . ....|+...-..+.+.+.+++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44589999999999999999986421 0 0 1122333334457778899999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.-.....++-.|+.++|+++... -.......|.++.+ -+.|.+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 99888899999999999997532 11233345656555 378999999999975
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=70.21 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=67.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----------ccCccceeEE--EEEEcC--EEEEEEEcCCCCCcc---cc-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIR---PL- 77 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~---~~- 77 (181)
=.|+|+|+|.+|.||||++|.++...... ...|+.+... .+..++ .+++++||||--+.. +.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999997654321 1123333322 233333 578899999932111 01
Q ss_pred ----------------------ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 78 ----------------------WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 78 ----------------------~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+ .++++++|.+.++ ..++.-+.-.+..-+.. -..++-|+-|.|....
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 11111 2467888888776 34444444333332321 2347889999997654
Q ss_pred C
Q 030187 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
+
T Consensus 200 e 200 (336)
T KOG1547|consen 200 E 200 (336)
T ss_pred H
Confidence 3
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=66.47 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=39.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE-EEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G 70 (181)
...+++++|.+|+||||++|++.+.......++.+.+... +...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 4578999999999999999999977655545555544321 111234789999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=73.28 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=92.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc-------CC---cc--cccC-----ccceeEEE--EEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL-------GE---IV--TTIP-----TIGFNVET--VEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~-------~~---~~--~~~~-----t~~~~~~~--~~~~~~~~~i~D~~G~~~~ 74 (181)
++.+++|.-+|+...|||||...+.. .+ +. +..| .+.++... ++.....+-=.|+|||.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34678999999999999999877632 11 11 1111 22233333 4445567778899999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
-..+.....+-|+.|+|+.++|..=-+. ++-+ -+.++.. =..+++++||.|..++.+.- ++.+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHl-LLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHL-LLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcch-HHHH-HHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9988888888999999999986532222 2111 1122222 14588899999998553322 233344444555
Q ss_pred CcceEEEEeccc
Q 030187 150 QRHWYIQSTCAT 161 (181)
Q Consensus 150 ~~~~~~~~~Sa~ 161 (181)
.-+.|++.-||.
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 667788888865
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=79.98 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=78.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC------------c---ccccCccceeEEE----EEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE------------I---VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~------------~---~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~ 76 (181)
..-++.++.+...|||||...|.... | .+...+.+++... ...+++.++++|+|||.+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 34589999999999999999996432 1 2334455554322 223678999999999999999
Q ss_pred cccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 77 LWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
......+-+|++++++|+.+ +++..-+++.|.+ +...++|+||+|.
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhh
Confidence 99999999999999999853 3344444444433 4557999999993
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=73.37 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=92.4
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccCccceeEE--EEEEcCEEEEEEEcCCC----------CCccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYKNISFTVWDVGGQ----------DKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~~~~~~i~D~~G~----------~~~~~~~ 78 (181)
++.+...+++.|.+|+|||+|+|.+....... ..++.+.+.. .+.. +-.+.+.|.||. .++....
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-cceEEEEecCCcccccCCccCcchHhHhH
Confidence 45677999999999999999999998766431 1112222111 1222 347889999992 2333444
Q ss_pred cccccCcc---EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhh-C-CCc
Q 030187 79 RHYFQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKL-G-LHS 147 (181)
Q Consensus 79 ~~~~~~~d---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~-~-~~~ 147 (181)
..|+-+-+ .+++.+|++- +++....-..+++.+ .+.|+.+|.||+|...... ...+...+ . ...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 45544433 4555556542 344444444455555 5799999999999764321 11111100 0 011
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.-....+++.+|+.++.|+++++-.+..
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 1122345677999999999998766543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-08 Score=65.40 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=58.1
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
.+.++|.+++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+......+...+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 35789999999999875321 122233333221 2458999999999997543333333333321 1223578999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
+++.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987653
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=72.41 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=40.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE--EEEEcCEEEEEEEcCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~ 72 (181)
...++++++|.||+|||||+|.|.+.......+..+.+.. .+... -.+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 3568999999999999999999998775443433333222 23222 358899999963
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=67.20 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=38.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccce--eEEEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 71 (181)
...++++++|.+|+|||||+|++.+.......+..+. ....+..+ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3457999999999999999999998765332222222 22223332 46889999984
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=77.33 Aligned_cols=97 Identities=25% Similarity=0.275 Sum_probs=62.5
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh----hhCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD----KLGL 145 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~----~~~~ 145 (181)
+++|+.+...+.+.++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.... ..+.+.. ....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 45788888888899999999999975431 1122222222 257899999999986542 2222211 1111
Q ss_pred CcccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
.... ...++.+||++|.|++++++.|.+.
T Consensus 123 ~g~~--~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLK--PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCC--cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1110 1137789999999999999998653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-08 Score=73.62 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=41.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE--EEEcCEEEEEEEcCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 72 (181)
....+++|+|-||+||||+||+|.+.......+..|.+-.. +... -.+.++||||--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCCcC
Confidence 45689999999999999999999998865544444443322 3222 248999999943
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-08 Score=64.58 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=53.3
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.......++...+... .+..++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999987654432 2222 22222 478999999999996543222222222111 12357789999999
Q ss_pred CHHHHHHHHHHH
Q 030187 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~v~~~~~~l~~~ 176 (181)
|++++++.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988664
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.1e-09 Score=78.58 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=87.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-----------------cc----cccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-----------------IV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-----------------~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
-+|.++.+..+||||...|+..-. |. +...|+...-..+++++.+++++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 489999999999999999985311 10 122344444556888999999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~ 144 (181)
.....++-.|+++.|||++..-.-+.+ ..|.+. ...++|-+.++||+|..... ..+.+.+.++
T Consensus 118 everclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 999999999999999998744222332 334333 23589999999999986543 2334444444
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=72.28 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=38.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
...++++++|.||+|||||+|+|.+.......+..+.+. ..+... -.+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 356899999999999999999999876433333222221 223332 25799999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-08 Score=68.48 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=35.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--------cccCcccee--EEEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------TTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------~~~~t~~~~--~~~~~~~~~~~~i~D~~G 70 (181)
+..+++++|.+|+|||||+|.|.+.... ...+..+.+ ...+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 111111222 22232332 579999998
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=69.49 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=89.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-------------------cccC-----ccceeE--EEEEE------------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIP-----TIGFNV--ETVEY------------ 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-------------------~~~~-----t~~~~~--~~~~~------------ 58 (181)
.++++++|...+|||||+--|..++.. ...+ +++++. .-+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 369999999999999999887543211 1111 112111 01111
Q ss_pred cCEEEEEEEcCCCCCcccccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 136 (181)
..--+.++|.+|+.+|.......+. ..|..++|+++........-.. +--+.. .++|+.++++|+|+.++...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH----hCCCeEEEEEeeccccchhH
Confidence 1234889999999999887654444 3788899998875443322111 111111 47999999999999876433
Q ss_pred hHHHhhh----C---CC------------------cccCcceEEEEecccCCCCHHHH
Q 030187 137 AEITDKL----G---LH------------------SLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 137 ~~~~~~~----~---~~------------------~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+...+.+ . .. ...+.-.|+|.+|+.+|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 2222111 1 00 00123468999999999998654
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-07 Score=64.11 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=56.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc----cccCccceeEEEEEE---cCEEEEEEEcCCCCCccc------ccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV----TTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~----~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------~~~ 79 (181)
.+-.-|.|+|++++|||+|+|+|.+. .+. ....|.++..+.... .+..+.++||+|-..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34467899999999999999999988 543 123356665554444 357899999999543322 122
Q ss_pred ccccC--ccEEEEEEECCCcc
Q 030187 80 HYFQN--TQGLIFVVDSNDRD 98 (181)
Q Consensus 80 ~~~~~--~d~~ilv~d~~~~~ 98 (181)
..+.- ++.+|+..+....+
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 22233 78888888766443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-07 Score=72.08 Aligned_cols=148 Identities=14% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc------------ccc---------C-----------ccc------
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV------------TTI---------P-----------TIG------ 50 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~---------~-----------t~~------ 50 (181)
+.+...+++-||++.|..++||||++|.+...+.. ... . |+.
T Consensus 101 i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL 180 (749)
T KOG0448|consen 101 IDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHAL 180 (749)
T ss_pred HHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhc
Confidence 44567788999999999999999999999653210 000 0 000
Q ss_pred --------eeEEEEEEcC-------EEEEEEEcCCCC---CccccccccccCccEEEEEEECCCcccHHHHHHH-HHHHh
Q 030187 51 --------FNVETVEYKN-------ISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE-LHRML 111 (181)
Q Consensus 51 --------~~~~~~~~~~-------~~~~i~D~~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~~~ 111 (181)
....++-+++ -.+.++|.||-. ....-...+.-++|++|+|.++.+ .+...... +....
T Consensus 181 ~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 181 KPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVS 258 (749)
T ss_pred CcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhh
Confidence 0000111110 147789999954 333334566678999999999843 34333332 33333
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhh---hCCCcccCcceEEEEecccC
Q 030187 112 NEDELRDAVLLVFANKQDLPNAM--NAAEITDK---LGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 112 ~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 162 (181)
. .++.+.++.||.|....+ -.+.+.++ ++........-.+|.+||+.
T Consensus 259 ~----~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 259 E----EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred c----cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3 355677777898975432 22333333 33222223333466678553
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=69.74 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=54.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEE----------EE----EcCEEEEEEEcCCCCC--
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVET----------VE----YKNISFTVWDVGGQDK-- 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~----------~~----~~~~~~~i~D~~G~~~-- 73 (181)
.+++.++|.||+|||||+|.+.... |.+-.|..++-+.. +. .....+.++|++|-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999997654 22333433332211 11 1235689999999532
Q ss_pred -----ccccccccccCccEEEEEEECC
Q 030187 74 -----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 -----~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
.-+.....+|.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334566788999999999975
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=62.76 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=37.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G 70 (181)
....+++++|.||+|||||+|.+.+.... ...+ |..... +... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCC
Confidence 45689999999999999999999986532 2222 333322 2222 4689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-08 Score=73.47 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=95.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeE-----EE------------------------EEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNV-----ET------------------------VEY 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~-----~~------------------------~~~ 58 (181)
.+-.++|.-+|+.-.||||++..+.+-... +..-|+...| +. .+.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 456689999999999999999888653210 0000111100 00 000
Q ss_pred ----cC----EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHH--HHhcCCCCCCCeEEEEEeCC
Q 030187 59 ----KN----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ----~~----~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK~ 128 (181)
.. ..+.+.|+|||+-.-+.+.....--|++++++..++++.-....+.+. ++.+ -..++++-||.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKi 189 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKI 189 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechh
Confidence 01 246789999988554443333344678888887765443322222221 1111 34588889999
Q ss_pred CCCCCCCHhHHHhhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 129 DLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 129 D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|+..+....+-.++.. .......+.|++++||.-+.|++-+.++|++++.
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9987643333222221 1222334668999999999999999999999875
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=62.72 Aligned_cols=149 Identities=17% Similarity=0.052 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE----EEEcCEEEEEEEcCCCCC------cc-ccccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK------IR-PLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~------~~-~~~~~~~~~~d 86 (181)
-++.++|-|.+||||++..+.+.... ..+....+..+ ......++++.|.||--+ .+ .......+.|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 38899999999999999999876421 11111112222 334667899999998322 11 12345568899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-----------------------------------------------------
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNE----------------------------------------------------- 113 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~----------------------------------------------------- 113 (181)
.+++|.|+-.|-+...+.+.-.+-+..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 999999987665444443311111000
Q ss_pred ------CCCC--CCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 114 ------DELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 114 ------~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.... -+|.+.++||.|....+ +..-.+.. ...+.+||..+.|++++++.+-+.+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISiE---ELdii~~i-------phavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISIE---ELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeeee---ccceeeec-------cceeecccccccchHHHHHHHhhcc
Confidence 0111 36788888888865542 22211222 2567899999999999998876643
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-08 Score=66.07 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=58.3
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
.......+.++|.+++|+|+.++..... ..+...+ .+.|.++|+||+|+.+......+.+.+.. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCe
Confidence 3344566789999999999976543211 1122222 24689999999998644222222121111 1235
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++.+||+++.|++++.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 67899999999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=72.48 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=72.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
..+-++|+||||+||||||..|...-.......+.-.+..+..+...+++.++|.+ ... +.....-||.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEEEeccc
Confidence 45678899999999999999998654333333333334446677788999999832 222 233446799999999985
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
-. |+--.-.+..++..+.. +.++-|+|..|+....
T Consensus 145 fG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 145 FG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNP 179 (1077)
T ss_pred cC--ceehHHHHHHHHhhcCC--CceEEEEeecccccCh
Confidence 32 32222234444554332 3377888999997643
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=66.76 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=75.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--ccc--------------cCccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTT--------------IPTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~--------------~~t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++.++... .. ... ....++.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 4578999999999999987777531 10 000 00011111100
Q ss_pred EEcCEEEEEEEcCCCCCccccc----ccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...+..+.++||+|........ ... .-++|.+++|.|+............+.+.+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 1124579999999976533221 111 125789999999875432222222232221 224788999998
Q ss_pred CCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 131 PNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
...-. .-.+....+. |+..++ +|++++++..
T Consensus 292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 65432 2233333333 233344 7888877654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-07 Score=66.96 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------~t~~~~~~~~----------------- 56 (181)
....++++|++|+||||++..+... .. .... ...++.+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999988531 10 0000 0011111111
Q ss_pred EEcCEEEEEEEcCCCCCcccc----ccc--------cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPL----WRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~----~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||....... ... .-..++..++|.|++... ..+.. ...+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 113568999999997643321 111 113478899999998432 22222 2222211 1235788
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||.|....- ..-.+....+. |+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 9999976542 22334444443 333344 677776553
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-07 Score=68.31 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=53.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-c-cc--cCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI-- 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-~-~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~-- 74 (181)
.++.++|.|++|||||+|.+.+... . .. ..|+..+...+... ...+.+.|.||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987653 2 11 11233333323322 246889999995432
Q ss_pred -----cccccccccCccEEEEEEECC
Q 030187 75 -----RPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 -----~~~~~~~~~~~d~~ilv~d~~ 95 (181)
.+.....++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223556788999999999975
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-07 Score=70.02 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=60.0
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
......+.++|.+++|+|+.++.+... ..+.+.+ .+.|+++|+||+|+.+......+.+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 344566788999999999976533221 2233333 25789999999998654222333222211 12357
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+||+++.|++++.+.+.+.+.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 78999999999999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=64.65 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=75.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------~t~~~~~~~~----------------- 56 (181)
....|+++|++|+||||.+.++... +. .+.. .-.+......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999998888531 10 0000 0011111100
Q ss_pred EEcCEEEEEEEcCCCCCcccccc-------cc-----ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWR-------HY-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||+|......... .. -..+|.+++|+|++.. .+.+. ....+.+.. .+--+|
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEE
Confidence 01347899999999765433211 11 1238999999999743 22222 222222211 235788
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+||.|...... .-.+....+. |+..++ +|++++++-.
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCcc
Confidence 99999865432 2234444443 233334 6777766543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=67.49 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=78.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEEc----CEEEEEEEcCCC-------CCcccc-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYK----NISFTVWDVGGQ-------DKIRPL- 77 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~~----~~~~~i~D~~G~-------~~~~~~- 77 (181)
.=.|+|+.+|..|.|||||+..|++..+.. ..|++.....+++.. .+++++.||.|. ..|..+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 356899999999999999999999877643 334555555555442 267889999992 122111
Q ss_pred ---------------------ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 78 ---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 78 ---------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
....-.+.++++|.+.++ ..++..+......-+. .+..||-++.|.|-.+.
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhH
Confidence 111112467888888877 6788888877766666 36668888889997654
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-07 Score=67.74 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-------------------ccccCccceeEEEEEE--------------------
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-------------------VTTIPTIGFNVETVEY-------------------- 58 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-------------------~~~~~t~~~~~~~~~~-------------------- 58 (181)
.+++|+|+..+|||||+--|.+++. +...++++.++-.|+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 5999999999999999987765321 1122233333322221
Q ss_pred --c-CEEEEEEEcCCCCCccccc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 59 --K-NISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 59 --~-~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+ ---+.++|.+|+++|.... .+--+-.|...+++-++.. +-.+. .+.+...-....|+.+|.||+|+...
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmT---KEHLgLALaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMT---KEHLGLALALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceecc---HHhhhhhhhhcCcEEEEEEeeccCcH
Confidence 1 1237899999999998753 3444457888888876421 11111 11111111147899999999999876
Q ss_pred CCHhHH----HhhhCCCcc---------------------cCcceEEEEecccCCCCHHHHHH
Q 030187 134 MNAAEI----TDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 134 ~~~~~~----~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+..++- .+.+..+.. ..+-+++|.+|-.+|+|++-+-.
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 544332 222222111 12347899999999999876543
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=68.07 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
+..++.....+ .++++|.+|+|||||+|.|.+...... ..|.......+... ..++||||-..
T Consensus 196 ideL~~~L~~k---i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~ 269 (347)
T PRK12288 196 LEELEAALTGR---ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE 269 (347)
T ss_pred HHHHHHHHhhC---CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence 34444444322 479999999999999999997653211 12333333333222 25999999766
Q ss_pred cc
Q 030187 74 IR 75 (181)
Q Consensus 74 ~~ 75 (181)
+.
T Consensus 270 ~~ 271 (347)
T PRK12288 270 FG 271 (347)
T ss_pred cc
Confidence 55
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=68.22 Aligned_cols=111 Identities=22% Similarity=0.179 Sum_probs=64.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc------CCc--ccc--------------cCccceeEEEEEE---------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL------GEI--VTT--------------IPTIGFNVETVEY--------------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~------~~~--~~~--------------~~t~~~~~~~~~~--------------- 58 (181)
.+.-|+++|++|+||||++.+|.. .+. ... ....++.++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999952 110 000 0011222221110
Q ss_pred --cCEEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 59 --KNISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 59 --~~~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.++.+.++||+|........ .. ...+++.+++|+|++-...-......+.+. -.+--+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccC
Confidence 25689999999976443221 11 123578899999987543333333333221 2346788999998
Q ss_pred CCC
Q 030187 131 PNA 133 (181)
Q Consensus 131 ~~~ 133 (181)
...
T Consensus 252 ~ar 254 (429)
T TIGR01425 252 HAK 254 (429)
T ss_pred CCC
Confidence 643
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-07 Score=60.30 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=47.9
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
..+.++|++++|+|+.++.+.. ...+.+.+.... .++|+++++||+|+.......++.+.+.. .+..++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 4567899999999998765433 112222222221 46899999999998654332233332221 224678899
Q ss_pred ccCCCC
Q 030187 160 ATSGEG 165 (181)
Q Consensus 160 a~~~~~ 165 (181)
|+++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 988654
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-07 Score=66.48 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=55.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEE-----------------cCEEEEEEEcCCCCCcc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-----------------KNISFTVWDVGGQDKIR 75 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~~~ 75 (181)
+++++.+||.|++|||||+|.|...... ...| |++.+..++.. -...++++|++|..+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 5689999999999999999999765422 2222 44444444332 13568999999954332
Q ss_pred -------ccccccccCccEEEEEEECC
Q 030187 76 -------PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 -------~~~~~~~~~~d~~ilv~d~~ 95 (181)
+...+.++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 33556778999999988764
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-06 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|.+.|+||+||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3458999999999999999998864
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-07 Score=60.54 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999998874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.4e-07 Score=67.49 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++|+|++|+|||||+|.|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998764
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.1e-07 Score=60.23 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998654
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=63.22 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
+..++..... -.++++|++|+|||||+|.|.+..... ...|.......+ .+ -.++||||-..
T Consensus 111 i~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 111 LKELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred HHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 3444544332 378999999999999999998754221 112333334333 22 37999999654
Q ss_pred cc
Q 030187 74 IR 75 (181)
Q Consensus 74 ~~ 75 (181)
+.
T Consensus 184 ~~ 185 (245)
T TIGR00157 184 FG 185 (245)
T ss_pred cC
Confidence 43
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=75.00 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=63.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeE-EEEEE-cCEEEEEEEcCCCC--------Cccccccccc-
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNV-ETVEY-KNISFTVWDVGGQD--------KIRPLWRHYF- 82 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~-~~~~~-~~~~~~i~D~~G~~--------~~~~~~~~~~- 82 (181)
=.+|+|++|+||||++++- +-.++-. ..+.+..- ..+++ -.-+-.++||+|.- .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 4799999999999999987 3332211 11111100 01111 11245699999921 1222333332
Q ss_pred --------cCccEEEEEEECCCc-----ccH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 --------QNTQGLIFVVDSNDR-----DRV----VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 --------~~~d~~ilv~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+-.+++|+++|+.+. +.. ..+...+.++..... -..|+.+++||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 348999999997532 111 223333444433333 5899999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-06 Score=64.12 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=59.1
Q ss_pred EEEEEEcCCC-------------CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+.+.|.||- +....+...++.+++++|+|+--. |.+.-.....++..+..-.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5778999992 123345678899999999999421 333334444455555554677899999999
Q ss_pred CCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 129 DLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+.+.+ ....+.+.+.-..+.-.-..||.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 998752 445666666543333333334433
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-07 Score=62.60 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc----------------------cccCccceeEEEE-----------------EE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV----------------------TTIPTIGFNVETV-----------------EY 58 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~----------------------~~~~t~~~~~~~~-----------------~~ 58 (181)
..|+++|++|+||||.+-+|...... ......++..... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 35899999999999999888531100 0001122222111 11
Q ss_pred cCEEEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.++.++||+|....... +..+ ....+-+++|.+++....-......+.+.+. +--+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCC
Confidence 3467999999997654432 1111 1257889999998744322222222222221 1256799999875
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 4
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.6e-06 Score=65.31 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=35.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-----ccccCccce--eEEEEEEcCEEEEEEEcCCCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
..++.++|.+|+|||||+|.+.+... ....+..+. ....+... -.+.++||||-..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCC
Confidence 36999999999999999999987432 111222222 22223331 2367999999543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=60.79 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+=|.||||..+|||||+.||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 37799999999999999999964
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=63.95 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=59.6
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
......+..+|++++|+|+.++.+... ..+.+.+. +.|+++|+||+|+.+....+.+.+.+. ..+.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v 83 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKA 83 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeE
Confidence 334556788999999999976543221 22333332 578999999999864422223322221 112357
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+||+++.|++++.+.+.+.+.
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 78999999999999998877654
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=66.11 Aligned_cols=95 Identities=21% Similarity=0.159 Sum_probs=55.1
Q ss_pred CccccccccccCcc-EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH---HHhhh-CCC
Q 030187 73 KIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE---ITDKL-GLH 146 (181)
Q Consensus 73 ~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~---~~~~~-~~~ 146 (181)
.|....... ...+ .+++|+|+.+.. ......+.++. .+.|+++|+||+|+..... .+. +...+ ...
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 344443333 4445 889999987642 11222232322 2578999999999965321 111 21111 111
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
... ...++.+||+++.|++++++.|.+..
T Consensus 130 g~~--~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLR--PVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCC--cCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 110 11477899999999999999987653
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=54.26 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=36.4
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
++.+.++||+|..... ..++..+|.++++..++-.+.+.-... ..+.. .=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence 4678999999865322 347788999999998763333322222 22222 1288899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.6e-06 Score=64.04 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=33.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-----c--ccccCccceeEEEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-----I--VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 71 (181)
..++.++|.+|+|||||+|+|.+.. . ....|.+......+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 4589999999999999999998542 1 112221111222232222 2479999995
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=66.90 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=43.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
.+.|.+||-||+||||+||.|.+.+-.....|.|-+- .++... -.+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCCc
Confidence 5899999999999999999999999887777777543 334333 36789999994
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=61.31 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=54.3
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..|+|.+++|+++..+-... ....+...+.. .+++.++|+||+|+.+... +........ ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChh-HHHHHHHHHHH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 57899999999996332322 33333333333 4677789999999975411 111111111 234578899999
Q ss_pred CCCCHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~~v~~~~~~l~ 174 (181)
++.|++++.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=61.25 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-----------CccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
-.++++|++|+|||||+|.|.+....... .|.... .+.... ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999876432111 122222 222221 23689999987664
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=60.83 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=65.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc-------c---cccC--------------ccceeEEEEE-----------EcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------V---TTIP--------------TIGFNVETVE-----------YKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~-------~---~~~~--------------t~~~~~~~~~-----------~~~ 60 (181)
+.-.++++|++|+||||++.+|..... . .... ..++....+. ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345899999999999999999864210 0 0000 0111111111 135
Q ss_pred EEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+.++||+|........ .. ....+.-.++|++++. .+........+..........- .+--+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 678999999977543321 11 1223456789999874 3444555455544432211100 12357779999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 3
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-06 Score=62.14 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=35.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc------c-----cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEI------V-----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~------~-----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
..+++|++|+|||||+|+|.+... + ....|.....+.+...+ .++||||-.++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 788999999999999999987431 1 11223333333333233 689999976654
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-05 Score=53.04 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=38.9
Q ss_pred CEEEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++|++|....... ...+ ....+.+++|+|+..... .......+.+.. + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456889999997543221 1111 124899999999864432 223333333221 1 25677799997654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=60.38 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
...++++|++|+|||||+|.|.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999998764
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-05 Score=59.47 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=60.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------Cc-----ccccC-----------ccceeEEEEE---------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE--------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------~~-----~~~~~-----------t~~~~~~~~~--------------- 57 (181)
..+..|+++|++|+||||++..|... .. ....+ ..++..+...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678999999999999999888431 00 00000 0111111100
Q ss_pred EcCEEEEEEEcCCCCCccccc----c--ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLW----R--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.....+.++||+|........ . .....+|.+++|+|++... ........+... -...-+|+||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 012478999999976543221 1 1133589999999987542 222222222111 11235677999975
Q ss_pred C
Q 030187 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=61.17 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=66.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--------ccccc--------------CccceeEEEEEE--------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTTI--------------PTIGFNVETVEY--------------K 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~~--------------~t~~~~~~~~~~--------------~ 59 (181)
....|+++|++|+||||++..|...- +.... ...++....... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999995311 00000 011111111100 1
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... ....+ ...+.+++|+|++.. -..+......+.. -.+--+++||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 367999999997643221 12222 236778999987532 1222333322211 1224678899998764
Q ss_pred C-CHhHHHhhhCCC
Q 030187 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
. ..-.+....+++
T Consensus 393 ~G~iLni~~~~~lP 406 (436)
T PRK11889 393 SGELLKIPAVSSAP 406 (436)
T ss_pred ccHHHHHHHHHCcC
Confidence 3 223444444443
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|++.|+||+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=59.90 Aligned_cols=111 Identities=23% Similarity=0.192 Sum_probs=67.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------C--------cc--------cccCccceeEEEE---------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------E--------IV--------TTIPTIGFNVETV--------------- 56 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~--------~~--------~~~~t~~~~~~~~--------------- 56 (181)
.+.+..|+++|..|+||||.+-.|... + +. .....+++.++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 456788999999999999998887431 0 00 0001222222221
Q ss_pred --EEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 57 --EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 57 --~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
....+.+.++||+|.-......- .-.-++|-+++|+|+.-.+...+....+.+.+.. -=+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 11246799999999765543321 1234689999999998665555555555555443 24556677
Q ss_pred CCC
Q 030187 129 DLP 131 (181)
Q Consensus 129 D~~ 131 (181)
|..
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 654
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=56.64 Aligned_cols=92 Identities=24% Similarity=0.197 Sum_probs=62.6
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..-..+.|-.++|+.+.+|+--..+...+.-.++. .++.-++++||+|+.+.+.... ......+...+++.+.+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFV 147 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEe
Confidence 33445578888888888776555555555444444 4666788899999998755443 11112233456788999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
|++++.|++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998877654
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00033 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.3e-05 Score=60.31 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=60.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC--------Cc--ccccC--------------ccceeEEEEE-----------EcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETVE-----------YKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~--------~~--~~~~~--------------t~~~~~~~~~-----------~~~ 60 (181)
..-.|+++|++|+||||++..|... +. ....+ ..++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568999999999999999888531 11 01000 1111111111 134
Q ss_pred EEEEEEEcCCCCCccccccc---ccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRH---YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
..+.++||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 67999999997543322110 010 1235677777753 23344433333322 2356789999998543
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.3e-05 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++-.+|+||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46789999999999999999853
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=45.14 Aligned_cols=97 Identities=20% Similarity=0.120 Sum_probs=55.3
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc-ccccccCccEEEEEEECCCcc
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+++.|.+|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999888643211 111222222 7899999987644431 13445679999999987632
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+.........+..........+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222223445555543
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=56.08 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=62.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-ccccCcc-----------------------ceeEEEEE-----------EcCE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTI-----------------------GFNVETVE-----------YKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~-----------------------~~~~~~~~-----------~~~~ 61 (181)
+-.|++|||+|+||||-+.+|..... ......+ ++...-+. ..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 67899999999999999888854322 0111111 11111111 1346
Q ss_pred EEEEEEcCCCCCcccc----cccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||.|...+... ...++. ...-+.+|++++.. ...+...+..+.. -..--+++||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccCc
Confidence 7999999998766543 223322 23456678887643 2344443433321 1223677899997754
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=54.85 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=41.6
Q ss_pred CEEEEEEEcCCCCCcccc--cc---ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL--WR---HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~--~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.....++++.|...-... .. ...-..+.++.|+|+.+-.........+.+.+.... ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 356788899996555444 00 012246889999999654333444445555555433 8899999987654
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=57.70 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=41.5
Q ss_pred CEEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|........ .. ..-.++.+++|+|+... +........+.... ...-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 4679999999965432211 11 11257888999998643 23333333332211 123567799996543
Q ss_pred C-CHhHHHhhhC
Q 030187 134 M-NAAEITDKLG 144 (181)
Q Consensus 134 ~-~~~~~~~~~~ 144 (181)
. ....+....+
T Consensus 256 gG~alsi~~~~~ 267 (433)
T PRK10867 256 GGAALSIRAVTG 267 (433)
T ss_pred ccHHHHHHHHHC
Confidence 2 2334444444
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=57.23 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=42.8
Q ss_pred CEEEEEEEcCCCCCccccccc------cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRH------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|.......... ..-+++.+++|+|+... +........+.... ...-+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 467899999996543221111 12357899999998744 23333333332211 123666899996443
Q ss_pred C-CHhHHHhhhCC
Q 030187 134 M-NAAEITDKLGL 145 (181)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (181)
. ....+....+.
T Consensus 255 ~G~~lsi~~~~~~ 267 (428)
T TIGR00959 255 GGAALSVRSVTGK 267 (428)
T ss_pred ccHHHHHHHHHCc
Confidence 2 23344444443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.7e-05 Score=55.20 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCCCccccc------cccccCccEEEEEEEC------CCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeC
Q 030187 61 ISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDS------NDRDRVVEAR-DELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~ilv~d~------~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK 127 (181)
-.+.++|.|||.++.... -..+...+.-+.++++ ++|..|-+.. ..+..++. -..|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhhH
Confidence 458899999987644321 1223345554444443 3555553333 23333333 35666778899
Q ss_pred CCCCC
Q 030187 128 QDLPN 132 (181)
Q Consensus 128 ~D~~~ 132 (181)
+|+..
T Consensus 173 ~Dl~~ 177 (290)
T KOG1533|consen 173 ADLLK 177 (290)
T ss_pred hHHHH
Confidence 99864
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.8e-05 Score=59.48 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------c--cccc--------------CccceeEEEE----------EEcCEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VTTI--------------PTIGFNVETV----------EYKNISF 63 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~--~~~~--------------~t~~~~~~~~----------~~~~~~~ 63 (181)
..-++++|++|+||||++.+|.... . .+.. ...++..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999986421 0 0000 0111111111 1135678
Q ss_pred EEEEcCCCCCcccc----cccccc-----CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 64 TVWDVGGQDKIRPL----WRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 64 ~i~D~~G~~~~~~~----~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++||+|....... +..+++ ...-.++|+|++... ..+......+ .. -.+--+|+||.|....-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 99999997532211 122111 245688999987442 2232222222 21 12346788999986543
Q ss_pred -CHhHHHhhhCC
Q 030187 135 -NAAEITDKLGL 145 (181)
Q Consensus 135 -~~~~~~~~~~~ 145 (181)
..-.+....++
T Consensus 376 G~il~i~~~~~l 387 (432)
T PRK12724 376 GSFLELADTYSK 387 (432)
T ss_pred cHHHHHHHHHCC
Confidence 22334444444
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2e-05 Score=61.23 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=60.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-------c--ccC---------------ccceeEEE-----------EEEcCE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------T--TIP---------------TIGFNVET-----------VEYKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-------~--~~~---------------t~~~~~~~-----------~~~~~~ 61 (181)
.-.++++|++|+||||++..|.+.... . ... -.++.... ....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988542100 0 000 01111111 011345
Q ss_pred EEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||+|....... ...+ .....-.++|+|++.. .+.+......+.. -.+--+++||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 6899999997653221 1221 1234568899998732 2233333322211 1234677899997654
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.5e-05 Score=60.40 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=41.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
++++++.|+|-|++||||+||+|.........++.+++. ..+..+ -.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence 577999999999999999999998887655455444432 223333 46899999993
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.1e-05 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
|
... |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.2e-05 Score=61.12 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=58.5
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE-EEEEEcCEEEEEEEcCCCCCcc--cccccc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKIR--PLWRHY 81 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~--~~~~~~ 81 (181)
|+.|-.=...+.++.|.+||-|++||||+||.|...+.....|-.+.+- +.+-.---.+-++|+||-..-. ......
T Consensus 295 lRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv 374 (572)
T KOG2423|consen 295 LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV 374 (572)
T ss_pred HHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH
Confidence 3444444567889999999999999999999999888766555444321 1111112357789999954222 222222
Q ss_pred ccCccEEEEEEECCCccc
Q 030187 82 FQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s 99 (181)
..+++-|=++.+++.
T Consensus 375 ---LkGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 375 ---LKGVVRVENVKNPED 389 (572)
T ss_pred ---hhceeeeeecCCHHH
Confidence 346677777776653
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=55.61 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC------c----ccccC--------------ccceeEEEE-----------EEcCEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE------I----VTTIP--------------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~------~----~~~~~--------------t~~~~~~~~-----------~~~~~~ 62 (181)
-.++++|++|+||||++..|...- . .+..+ ..++..... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 478999999999999887774311 0 01111 011111100 012467
Q ss_pred EEEEEcCCCCCccc----ccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 63 FTVWDVGGQDKIRP----LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~i~D~~G~~~~~~----~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.++||+|...... ....++. ...-+++|++++.. ...+...+..+... . +--++.||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEeccccccc
Confidence 99999999765431 1222222 34577888888532 23333333332111 1 23688999998654
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=60.71 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc---------cC---------------ccceeEEEE-----------EEcCEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---------IP---------------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~---------~~---------------t~~~~~~~~-----------~~~~~~ 62 (181)
--++++|+.|+||||.+..|........ .. -.++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4689999999999999998864220000 00 011111100 013457
Q ss_pred EEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.++||+|....... .... ....+-.++|+|++. .+.+.+....+...... .+-=+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence 999999996543221 1111 234667899999873 33444444444332110 123677899998754
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.7e-05 Score=54.56 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=66.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC----c----cc--------------ccCccceeEEEEE--------------Ec
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VT--------------TIPTIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~----~----~~--------------~~~t~~~~~~~~~--------------~~ 59 (181)
+.-+++++|++|+||||++..+...- . .. .....++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34699999999999999988774321 0 00 0001122211100 12
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... +...+ ...+-+++|+|++.. .+.+......+.. -.+--+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468999999997743322 11221 246678999998632 2233333333311 2234678999998764
Q ss_pred CC-HhHHHhhhCC
Q 030187 134 MN-AAEITDKLGL 145 (181)
Q Consensus 134 ~~-~~~~~~~~~~ 145 (181)
.. .-.+....+.
T Consensus 227 ~G~~l~~~~~~~~ 239 (270)
T PRK06731 227 SGELLKIPAVSSA 239 (270)
T ss_pred ccHHHHHHHHHCc
Confidence 32 2234444443
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00044 Score=52.20 Aligned_cols=91 Identities=18% Similarity=0.096 Sum_probs=47.3
Q ss_pred EEEEEEEcCCCCCccccccc-----c---ccCccEEEEEEECCCccc-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRH-----Y---FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~-----~---~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
....++++.|-..-.+.... . .-..|+++-|+|+..-.. .........+.+... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 56788889885443222111 1 123688999999864322 121222222222221 28999999999
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
++...+.+....... +...+++.+|.
T Consensus 159 ~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 875433322222111 22335666665
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=56.56 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=65.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--------cccc--------------cCccceeEEEEEE--------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTT--------------IPTIGFNVETVEY--------------K 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~--------------~~t~~~~~~~~~~--------------~ 59 (181)
..-.++++|++|+||||++.++...- +.+. ....++.+..... .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 34578999999999999999885311 0000 0011111111100 2
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... ...+. ...+.+++|.+++ .....+...+..+ . .-.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCCCC
Confidence 468999999998654322 11222 1346667777763 2233333333221 1 12234777999998754
Q ss_pred C-CHhHHHhhhCCC
Q 030187 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
- ..-.+....+++
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 3 223444444443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00063 Score=52.63 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC---------C-c--ccc--------------cCccceeEEEEE-----------Ec
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG---------E-I--VTT--------------IPTIGFNVETVE-----------YK 59 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~---------~-~--~~~--------------~~t~~~~~~~~~-----------~~ 59 (181)
...|+++|++|+||||.+.++... . . .+. ..-.++...... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 458999999999999999888531 1 0 000 001111111111 13
Q ss_pred CEEEEEEEcCCCCCccc----cccccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+.++||+|...... .....+.. ..-.++|+|++.. ...+...+..+.. -.+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 57899999999764332 11222222 2368899999754 3334344444321 123467889999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 4
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.3e-05 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.2e-05 Score=55.83 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCCCcccccccccc--------CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....++++.|...-..+...+.. ..++++.|+|+.+-.............+.. . =++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---A---D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---A---DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---C---CEEEEeccccCC
Confidence 56788899997654444332211 258899999986321111101111122222 1 288999999875
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 3
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.6e-05 Score=53.16 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999765
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.9e-05 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+++|+|||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
|
... |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.65 E-value=9e-05 Score=40.71 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred cCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
+-++++++++|++..+ +.+.....+.++... .+++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999998655 556665555555433 24899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.3e-05 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=3e-05 Score=60.73 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=71.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------------Cccc---ccCccceeEEE--------------------EEEcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------------EIVT---TIPTIGFNVET--------------------VEYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------------~~~~---~~~t~~~~~~~--------------------~~~~~ 60 (181)
+--++.|+.+...|||||...|... ++++ ..+..++++.. -+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 3458899999999999999999532 1211 11111121110 01134
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+-++++|.|||.+|.+..-..++-.|+.+.|+|.-+. +- .....+.+.+.+ .+.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV--QTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV--QTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe--chHHHHHHHHHh----hccceEEeehhhHH
Confidence 7789999999999999999999999999999996432 21 112233333332 34447788999954
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
.++.|--|+|||||++++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677899999999999999753
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=43.99 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=48.4
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcccccCccceeEEEEEEc-CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 20 ILMVGL-DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 20 i~v~G~-~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
|++.|. .|+||||+...+...-... +....-++.+ .+.+.++|+|+...... ...+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-H
Confidence 567775 6999999987775322111 1111111111 16789999998654332 25667799999999875 4
Q ss_pred ccHHHHHHHH
Q 030187 98 DRVVEARDEL 107 (181)
Q Consensus 98 ~s~~~~~~~~ 107 (181)
.++.......
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 4555554443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=54.63 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=55.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--------------Ccc--------cccCccceeEE-----------------E
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV--------TTIPTIGFNVE-----------------T 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--------------~~~--------~~~~t~~~~~~-----------------~ 55 (181)
.++--|+++|..|+||||.+-.|... .|. ....-.++.++ .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 35567899999999999998888431 010 00001111111 1
Q ss_pred EEEcCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHH
Q 030187 56 VEYKNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 110 (181)
+...++.+.+.||.|.-.-... .. .-.-++|-+|+|.|++-...-.....-+.+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 2235688999999996432221 11 1123589999999997555444444444443
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00042 Score=43.65 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=54.4
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 20 ILMVGL-DAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 20 i~v~G~-~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
|+++|. .|+||||+.-.|...-... ...+.-.+.... .+-.+.++|+|+..... ....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-h
Confidence 445554 7999999877774321111 000000000000 11278999999865432 234567899999999876 3
Q ss_pred ccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 030187 98 DRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~-~~piivv~nK 127 (181)
.++.........+.+. ..+ ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 3444444444333222 222 3456677765
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.9e-05 Score=54.48 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=36.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----cccccCccceeEEE---EEE-cCEEEEEEEcCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVET---VEY-KNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----~~~~~~t~~~~~~~---~~~-~~~~~~i~D~~G~ 71 (181)
..++++|+|-||+|||||+|.+.... .....+..+++... +.. ....+.++||||-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 56899999999999999999885432 11222222332211 222 3346889999993
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999864
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.52 E-value=8.6e-05 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.7e-05 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++||+|||||||++++.+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 468999999999999999997654
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=57.75 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=60.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEE-cCEEEEEEEcCCCCC--------cccccccc---
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQDK--------IRPLWRHY--- 81 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~--------~~~~~~~~--- 81 (181)
=-+|||+||+||||++..--. +++- .....+.....+++ -.-+-.++||+|.-. -...|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 358999999999999865432 2221 01111110111111 123567899998321 12223322
Q ss_pred ------ccCccEEEEEEECCCc---c-cH-----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 82 ------FQNTQGLIFVVDSNDR---D-RV-----VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ------~~~~d~~ilv~d~~~~---~-s~-----~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+-.+++|+.+|+++. + .. ..+...+.++-.... -..|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence 3457999999997532 1 11 112223333333222 4789999999999875
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=52.52 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=71.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--------------cc----c----ccCccceeEEE--------------EE-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IV----T----TIPTIGFNVET--------------VE- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~----~----~~~t~~~~~~~--------------~~- 57 (181)
.+.+-|+++|-.|+||||-+.+|...- |+ + .....+..... +.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 357899999999999999998885310 10 0 00011111111 10
Q ss_pred --EcCEEEEEEEcCCCCCcccc-----------cc-ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEE
Q 030187 58 --YKNISFTVWDVGGQDKIRPL-----------WR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (181)
Q Consensus 58 --~~~~~~~i~D~~G~~~~~~~-----------~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiv 123 (181)
-.++.+.++||+|...-... .. ....-++-++++.|++-.+.--+....+.+.... --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 14678999999996543221 11 1112245588888998664444444556665543 357
Q ss_pred EEeCCCCCCCC-CHhHHHhhhCCC
Q 030187 124 FANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 124 v~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
++||.|....- ..-.+.++++++
T Consensus 290 IlTKlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 290 ILTKLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred EEEecccCCCcceeeeHHHHhCCC
Confidence 78999965432 334566666654
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.5e-05 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=9.6e-05 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=-++|+||+|||||||+|-+.+-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999988653
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998853
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.6e-05 Score=53.24 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.8
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-...++++|+|++|||||+|+-.+...
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344567799999999999999998888654
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=40.75 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.9
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
..++.|+.|+||||++..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998774
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999888764
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|.+||||||+...|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.002 Score=50.45 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=82.8
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhc----CCcc---------------------ccc----C-ccceeEEE-
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL----GEIV---------------------TTI----P-TIGFNVET- 55 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~----~~~~---------------------~~~----~-t~~~~~~~- 55 (181)
-+......+++|-|.++|-.|+||||-+..+.. +.+. ... + .+.+-...
T Consensus 368 dI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGY 447 (587)
T KOG0781|consen 368 DIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGY 447 (587)
T ss_pred HHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhc
Confidence 334445567899999999999999998887742 1110 000 0 00000000
Q ss_pred --------------EEEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECC-CcccHHHHHHHHHHHhcCC
Q 030187 56 --------------VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNED 114 (181)
Q Consensus 56 --------------~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~ 114 (181)
-...++.+.++||+|...-..... .-....|.+++|-.+- .-++.+.+.. +.+.+...
T Consensus 448 gkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~-fn~al~~~ 526 (587)
T KOG0781|consen 448 GKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK-FNRALADH 526 (587)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH-HHHHHhcC
Confidence 011357899999999764433211 1235689999998753 3455555554 44444443
Q ss_pred CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+...=-++++|+|-.+. .+-.......+...++-|+-
T Consensus 527 ~~~r~id~~~ltk~dtv~d----~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 527 STPRLIDGILLTKFDTVDD----KVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred CCccccceEEEEeccchhh----HHHHHhhheeecCCceEEEe
Confidence 3344445678899997653 33444444444444444543
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00016 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-+.++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988653
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00083 Score=44.46 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEcCCCCChHHHHhhhhcCCc--------ccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.-|.+|+||||+.-.+...-. .+..+..+ . -.+.+.++|+|+... ......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----~---~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----N---LDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----C---CCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 446789999999766642210 01111000 0 016789999997543 223456788999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+ ..++......+..+.... ...++.++.|+.+..
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 86 444444343333332221 345678999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00019 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-|+|.|++||||||+.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999753
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=49.17 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+..++......+-.+++++|++|-|||+++++|....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 4455665555666899999999999999999998644
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998654
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=50.90 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++...|+|.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999988653
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=46.46 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999654
|
... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00022 Score=46.41 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~ 42 (181)
.-.++++|++|+||||++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35789999999999999999976543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00024 Score=52.80 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhh
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
|+.....+..+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567899999999999999997664
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=47.31 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=65.7
Q ss_pred cceEEEEcCCCC--ChHHHHhhhhcCCccccc---CccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 17 EMRILMVGLDAA--GKTTILYKLKLGEIVTTI---PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 17 ~~~i~v~G~~~~--GKssli~~l~~~~~~~~~---~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++|+|.+|+ ||-+++++|....+.... ....+.-++++. .++++-+.-. .++.+....+ ......+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishi-cde~~lpn~~-~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHI-CDEKFLPNAE-IAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecc-cchhccCCcc-cccceee
Confidence 356889999998 999999999877764221 222233333322 3333333211 1223332222 2244678
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+++|||++....+..+..|+-..--+ .--..+.++||.|...
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvp 123 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc---cchhheeccccccccc
Confidence 99999999888888888876322111 1123567789999753
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0002 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+++|+|||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0052 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-+++.||+|+||||.+..|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999888653
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0002 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...-|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00042 Score=45.47 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.+.........-.+++.|++|+|||++++.+...-
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444456689999999999999999997653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00021 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00024 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3789999999999999998865
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00024 Score=48.70 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00027 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|+++|+|||||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.++|.+|+|||||+.++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00057 Score=48.81 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=25.1
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.........-.+|++.|+||+|||+|...+...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444445579999999999999999888653
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0003 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00028 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+++|+|||||||+...|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00088 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 489999999999999999998654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00084 Score=46.14 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|+.++.+- ....+.+. +.. .+.|+++|+||+|+.+......+.+.+
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 789999999765221 11222233 222 368999999999997654444444433
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00026 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999999998854
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00028 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00037 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466889999999999999999753
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+|+++|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999854
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00034 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00031 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6678999999999999999999974
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0007 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++..... ..-.++++|++|+||||+++.+.+.
T Consensus 16 ~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34443333 3568999999999999999988764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0083 Score=41.09 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++|+|+..... ....+..+|.++++++++ ..++......+..+ ... ......+++|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~-~~~--~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLL-EAL--GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHH-HHc--CCceEEEEEeCCccccc
Confidence 69999999865432 334567899999999876 34455444433332 221 23457788999986543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00042 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|+++|+|||||+|+..+|..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4458899999999999999999965
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00041 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-.|+++|++|||||||++.+.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999999764
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00039 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|++|+|||+++..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00029 Score=50.45 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|++.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999998864
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00036 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+|+|+.|+|||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00033 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00035 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999876
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00034 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++||+||||||+++-+.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998763
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00036 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+|+|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00037 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++||.|||||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999975
|
|
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00052 Score=51.45 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
|+.+...+..+-|+|.|++||||||+.+.|..
T Consensus 77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444556778999999999999999988864
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00039 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-|+++||+|+|||||+++|...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0004 Score=47.95 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=22.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44578999999999999999888754
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00045 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-+.|+|++|||||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4457899999999999999999855
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00044 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.++++|+.|+|||||++.+.+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445789999999999999998853
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00059 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.......|+|.|++||||||+.+.|...
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3566788889999999999999999754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 181 | ||||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-104 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-91 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 9e-91 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 4e-89 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-86 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 1e-85 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 3e-85 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 6e-85 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 7e-84 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 6e-83 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-82 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 4e-80 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 5e-80 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 3e-77 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 8e-74 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 9e-74 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 7e-73 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 1e-72 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 4e-70 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 5e-70 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 7e-70 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 8e-70 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-67 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-57 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 5e-55 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 4e-54 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 3e-50 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-48 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 7e-48 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 8e-48 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 1e-46 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-44 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 2e-44 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-44 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 2e-44 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 3e-44 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 2e-42 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 2e-39 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 1e-38 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-38 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-38 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-37 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 3e-35 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 6e-28 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-27 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 4e-27 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 3e-26 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-24 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 5e-24 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-20 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 4e-20 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 4e-20 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 6e-20 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 7e-09 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 1e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 2e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 7e-08 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 7e-08 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 7e-08 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 8e-08 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 8e-08 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 8e-08 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 8e-08 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 8e-08 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 8e-08 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 8e-08 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 8e-08 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 8e-08 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 9e-08 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 9e-08 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 9e-08 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 9e-08 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 9e-08 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 9e-08 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 1e-07 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-07 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 1e-07 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 1e-07 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-07 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 2e-07 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 2e-07 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 2e-07 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 2e-07 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-07 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 3e-07 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-07 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 3e-07 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-07 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 3e-07 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 4e-07 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 4e-07 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-07 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 5e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 5e-07 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 8e-07 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 8e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 9e-07 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 1e-06 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 1e-06 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-06 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-06 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-06 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 3e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 3e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 4e-06 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 6e-06 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 6e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 7e-06 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-06 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 9e-06 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 9e-06 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 1e-05 | ||
| 1tnd_A | 324 | The 2.2 Angstroms Crystal Structure Of Transducin-A | 2e-05 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-05 | ||
| 3ah8_A | 355 | Structure Of Heterotrimeric G Protein Galpha-Q Beta | 2e-05 | ||
| 2bcj_Q | 353 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-05 | ||
| 4ekc_A | 347 | Structure Of Human Regulator Of G Protein Signaling | 2e-05 | ||
| 3ohm_A | 327 | Crystal Structure Of Activated G Alpha Q Bound To I | 2e-05 | ||
| 4gnk_A | 353 | Crystal Structure Of Galphaq In Complex With Full-l | 2e-05 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 2e-05 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 3e-05 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 3e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-05 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 3e-05 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 3e-05 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 4e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 4e-05 | ||
| 3cx7_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 4e-05 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 4e-05 | ||
| 1zcb_A | 362 | Crystal Structure Of G Alpha 13 In Complex With Gdp | 4e-05 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 4e-05 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 4e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 5e-05 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 5e-05 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 7e-05 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 7e-05 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 9e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 1e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-04 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 1e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 1e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 1e-04 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 1e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-04 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 3e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 3e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 3e-04 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 4e-04 | ||
| 3cx6_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 4e-04 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 5e-04 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-04 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 6e-04 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 6e-04 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 7e-04 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 8e-04 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 8e-04 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 9e-04 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 9e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 9e-04 |
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355 | Back alignment and structure |
|
| >pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353 | Back alignment and structure |
|
| >pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347 | Back alignment and structure |
|
| >pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327 | Back alignment and structure |
|
| >pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 356 bits (915), Expect = e-128
Identities = 95/184 (51%), Positives = 135/184 (73%), Gaps = 3/184 (1%)
Query: 1 MGLSFTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 57
MG L L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
YKNISF VWD+GGQ +RP WR YF +T +I+VVDS DRDR+ A+ EL+ +L+EDELR
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++LL+FANKQDLP+A + AEI ++LG+ S+ R W I + + +G+GL EG+DWL +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 ANKA 181
+
Sbjct: 183 REQG 186
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-127
Identities = 53/186 (28%), Positives = 103/186 (55%), Gaps = 6/186 (3%)
Query: 1 MGLSFT-----KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE 54
MG S +K+EM + +VGL +GKTT + + G+ IPT+GFN+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60
Query: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
+ N++ +WD+GGQ + R +W Y + ++++VD+ D++++ +++ELH +L++
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
+L+ +LV NK+DLP A++ E+ +K+ L +++ R S + + L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 175 NNIANK 180
+ ++
Sbjct: 181 QHSKSR 186
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-126
Identities = 143/180 (79%), Positives = 158/180 (87%), Gaps = 4/180 (2%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 17 RG----SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAV
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQD+PNAM +E+TDKLGL LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 351 bits (904), Expect = e-126
Identities = 85/180 (47%), Positives = 126/180 (70%), Gaps = 1/180 (0%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + + +
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 351 bits (903), Expect = e-126
Identities = 85/180 (47%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL T L ++E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++
Sbjct: 3 MGL-LTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LL+FANKQDLP A++ I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-125
Identities = 102/181 (56%), Positives = 136/181 (75%), Gaps = 1/181 (0%)
Query: 1 MGLSFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
MG F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
N+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
Query: 180 K 180
+
Sbjct: 181 E 181
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-125
Identities = 95/169 (56%), Positives = 125/169 (73%)
Query: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
AM ++E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-123
Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
KL S +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ +
Sbjct: 6 LRKLKS--APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+F
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
ANKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 344 bits (885), Expect = e-123
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 9/185 (4%)
Query: 1 MGLSFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
G F + + L K ++L +GLD AGKTT+L+ LK + T PT E +
Sbjct: 7 FGW-FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
NI FT +D+GG + R LW+ YF G++F+VD+ D +R EAR EL + N EL+D
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDW 172
++ NK D PNA++ AE+ LGL + QR + G E W
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQW 185
Query: 173 LSNNI 177
LS I
Sbjct: 186 LSQYI 190
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-121
Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%)
Query: 1 MGLSFTKLF--SRLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 56
MG S S L +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116
N F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++L
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
R A LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 177 I 177
+
Sbjct: 181 L 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-120
Identities = 150/163 (92%), Positives = 157/163 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-119
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 6/185 (3%)
Query: 2 GLSFTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVE 57
S L KE+ +L +GLD +GKTTI+ KLK +PTIGF++E +
Sbjct: 4 SHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK 63
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL- 116
++SFTV+D+ GQ + R LW HY++ Q +IFV+DS+DR R+V A++EL +LN ++
Sbjct: 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123
Query: 117 -RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
R +L FANK DL +A+ + +++ L L +++ + W+I ++ A GEGL EG+DWL +
Sbjct: 124 HRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183
Query: 176 NIANK 180
I
Sbjct: 184 QIQTV 188
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-119
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 1 MGLSFTKLFSRL--------FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 52
M F ++S KK +++ +GLD AGKTT+L+ LK + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112
E + ++FT +D+GG + R +W++Y G++F+VD D +R++E+++EL ++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 EDELRDAVLLVFANKQDLPNAMNAAEITDKLG------------LHSLRQRHWYIQSTCA 160
++ + + +L+ NK D P A++ + + G L L R +
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 TSGEGLYEGLDWLSNNI 177
+G EG W++ I
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 326 bits (836), Expect = e-114
Identities = 155/180 (86%), Positives = 162/180 (90%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 4e-86
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQ 71
+ +L VGL +GKT + +L G+ T +I + + N S T+ D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 DKIRP-LWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDEL--RDAVLLVFANK 127
+ +R L + + + ++FVVDS R V + + L+++L + LL+ NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
QD+ A +A I +L R +S ++ + L
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKK 171
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 1e-77
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK-------LGEIVT----TIPTIGFN---- 52
+ + +I+ G +GKTT L + GE+V+ T+ F+
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64
Query: 53 -VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111
+ V+ F ++ V GQ + + G++FV DS +R+ + + M
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMR 123
Query: 112 NE-----DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
L D +++ NK+DLP+A+ + + + + AT G+G+
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGV 179
Query: 167 YEGLDWLSNNIANK 180
+E L +S + +
Sbjct: 180 FETLKEVSRLVLAR 193
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 4e-73
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ I++ G +GKT++L L + T+ + + +Y T+ D G K+
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 68
Query: 75 RPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---LLVFAN 126
R Y + +GLIF+VDS D ++ + L +L+ E +L+ N
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128
Query: 127 KQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
K +L A ++I D L + + +R + + L
Sbjct: 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 4e-72
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
S + I++ G +GKT++L L + T+ + + +Y T+ D
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99
Query: 70 GQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---L 121
G K+R Y + +GLIF+VDS D ++ + L +L+ E +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 122 LVFANKQDLPNAMNAAEITDKLG--LHSLRQR 151
L+ NK +L A ++I D L + + +R
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIER 191
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 3e-60
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 5/127 (3%)
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED- 114
+ + G + + P + + G I+V ++ R + + M +
Sbjct: 99 FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158
Query: 115 -ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+L++ Q M + +L L+ L W +Q T A + G G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217
Query: 174 SNNIANK 180
+ +K
Sbjct: 218 LEEVESK 224
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 2e-53
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED--ELRDAVLL 122
G + + P + + G I+V ++ R + + M + +L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ Q M + +L L+ L W +Q T A + G G++W+ + +K
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-50
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYK-NISFT 64
+ F + RIL++GL +GK++I +K+ E + T + + ++F
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72
Query: 65 VWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDA 119
+WD GQ F+ T LI+V+D+ D EA LH +++ D
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDM 130
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
VF +K D ++D + + R H A +G
Sbjct: 131 NFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-37
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
++L++G +GK+++ + TI + + N++ +WD GGQD
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 74 -----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFAN 126
H FQ Q LI V D + ++ + + L + DA + V +
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 127 KQDLPNAMNAAEITDKL 143
K DL E+ +
Sbjct: 124 KMDLVQLDKREELFQIM 140
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 3e-21
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 20 ILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+L++G+ GK++I + ++ + + T ++E I V ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60
Query: 76 PLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDL 130
F++ L++V+DS D A L ++ + V +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-11
Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 30/185 (16%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEYKN-----ISFTVW 66
M++++VG +GKTT+L +L + + T+G ++ ++ + VW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVF 124
D G+++ H+ + V D + V D + L + R + +++
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV---DAMKPWLFNIKARASSSPVILV 118
Query: 125 ANKQDLPN--------AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
D+ + + E+ +K G ++R H+ + L + L
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF---VNATEESDALAK----LRKT 171
Query: 177 IANKA 181
I N++
Sbjct: 172 IINES 176
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 9e-10
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
++++++G A GK++I+ + + PTIG F + V + F +WD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ L Y++N Q + V D ++AR + L+E +D ++ + NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
++ + G ++ T A +GE
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 2e-09
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ + T G + ++F ++DVGGQ R W F + +IFVV S+ + V+
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 102 EARDELHRM----------LNEDELRDAVLLVFANKQDL 130
++ +R+ N LR +++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-09
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVE--YKNISFTVWDVGGQDKI 74
+++VG GKTT + + GE + T+G + I F VWD GQ+K
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
L Y+ Q I + D R V +L R+ + +++ NK D+
Sbjct: 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIK 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-09
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
PT G + E KN+ F + DVGGQ R W F + ++F+V S++ D+V+
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ +R+ +N + +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 6e-09
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
+ T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233
Query: 102 EARDELHRML----------NEDELRDAVLLVFANKQDL 130
+E++RM N D +++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG---FNVETVEY--KNISFTVWDVGGQDK 73
I ++G GKTT + ++ G T+G V ++ I F VWD GQ+K
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
L Y+ G I D R + E ++ +A ++V ANK D+
Sbjct: 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDI 129
Query: 131 PN-----AMNAAEITDKLGL 145
N E+
Sbjct: 130 KNRQKISKKLVMEVLKGKNY 149
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 21/164 (12%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-------------IVTTIPTIGFNVETVEYKNIS 62
+E+++ ++G AGKT++L +L + P I E K
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
F WD GGQ+ + + + + + ++DS + + + V++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK----SPVIV 155
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
V NK D + I K +G+G+
Sbjct: 156 V-MNKIDENPSY---NIEQKKINERFPAIENRFHRISCKNGDGV 195
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+E +++++G GK+ + + G + PTI F + +E + + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y +N QG I V ++ + RD++ R+ +++ V+LV NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV-GNKV 118
Query: 129 DLPN 132
DL +
Sbjct: 119 DLES 122
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-08
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + R+++ R+ + D D +++ NK
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKC 136
Query: 129 DLPN 132
DLP
Sbjct: 137 DLPT 140
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-08
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E ++++VG D GK+ + +L V PTI + ++ + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ++ + Y + +G + V N+ + + R+++ R+ + +++ ++LV N
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV--PMVLV-GN 117
Query: 127 KQDLPN 132
K DLP+
Sbjct: 118 KCDLPS 123
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L + TIG F V K I +WD GQ+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
R + R Y++ G + V D R + + ++ + + + V+++ NK D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSD 137
Query: 130 LPN 132
L +
Sbjct: 138 LES 140
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-08
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGG 70
+ ++++VG GK+ + + V+ PTI + I + D G
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
Q++ + Y + G + V NDR + V + ++ R+ + D D +++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNK 123
Query: 128 QDLPN 132
DL +
Sbjct: 124 ADLES 128
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-08
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD G ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 79 RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLA 134
Query: 132 N 132
+
Sbjct: 135 D 135
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-08
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D D + + ++ N+ +A LL+ NK D+
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDM 120
Query: 131 PN 132
Sbjct: 121 ET 122
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-08
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G + GKT+ L++ + T+G F V+TV K I +WD GQ++
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G + + D ++ V + ++ + +A +++ NK DL
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDL 139
Query: 131 PN 132
+
Sbjct: 140 ED 141
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 9e-08
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
++++VG GK+ + + V PTI ++ E N V D GQ
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + G + V D+ + V + R+ + + ++LV ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILV-ANKV 133
Query: 129 DLPN 132
DL +
Sbjct: 134 DLMH 137
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-08
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G + GKT+ L++ + T+G F V+T+ K I +WD G ++
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G I + D + + V + ++ + +A +L+ NK D+
Sbjct: 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDM 125
Query: 131 PN 132
+
Sbjct: 126 ED 127
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GKT +L + E + TIG F+ TV + +WD G +
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL+ V+++ NK D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKSD 141
Query: 130 LPN 132
L
Sbjct: 142 LSQ 144
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD GQ+
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + V EL + + V+++ NK D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 121
Query: 130 LPN 132
L +
Sbjct: 122 LRH 124
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+L++G + GKT+ L++ + T+G F V+TV K + +WD GQ++
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R + Y++ G I + D + + V + ++ + +A +++ NK D+
Sbjct: 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDME 141
Query: 132 N 132
Sbjct: 142 E 142
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVG 69
+ R+++ G GK++++ + G T IPTI + + + T + D
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G + + R I V + + + + ++ E D +++ N
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGN 122
Query: 127 KQDLP 131
K D
Sbjct: 123 KCDET 127
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG F ++TV+ K + +WD GQ+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D + + ++ N+ +A LL+ NK D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD 136
Query: 130 LPN 132
+
Sbjct: 137 MET 139
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 149
Query: 130 LPN 132
L
Sbjct: 150 LTT 152
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-07
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL--------------------PNA 133
D +RM + +++ +++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269
Query: 134 MNAAE--ITDK-LGLHSLRQRHWYIQSTCAT 161
AA I + L+ + Y TCAT
Sbjct: 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCAT 300
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+I++ G A GK++ L +L E T+G F ++T+ + +WD GQ++
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + + YF+ G++ + D + E D + +E +++ NK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADI 145
Query: 131 PNAMNAAE 138
+
Sbjct: 146 RDTAATEG 153
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G++ V D + D + + + D ++ NK D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCD 124
Query: 130 LPN 132
+ +
Sbjct: 125 VND 127
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + TIG F +E + I +WD GQ+
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + N + V+++ NK D
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKAD 131
Query: 130 LPN 132
L
Sbjct: 132 LEA 134
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+++L + TIG F V+T+ +WD GQ++
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R L Y++ QG+I V D R ++ +EL + D V ++ NK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNMLVGNKIDK 133
Query: 131 PN 132
N
Sbjct: 134 EN 135
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F V K + +WD GQ+
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + + + V+++ NK+D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKD 141
Query: 130 LPN 132
L
Sbjct: 142 LDP 144
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
++++VG GKT +L + K G T I T+G F + ++ + +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y+++ L+ + D ++ D + E+H D L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKV 126
Query: 129 DLPN 132
D +
Sbjct: 127 DSAH 130
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + I T+G F + + K ++ +WD GQ++
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++++ G I V D D D + + EL +ML + L + NK DL
Sbjct: 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLE 124
Query: 132 N 132
Sbjct: 125 K 125
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G TIG F ++TVE + + +WD GQ+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ LI D + E E+ + + + ++ NK D
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKID 142
Query: 130 LPN 132
L
Sbjct: 143 LAE 145
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVG 69
K +I ++G + GK+++ + G+ V + PTI F + + + + D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQD+ + Y + G I V + + +L M+ + ++ ++LV N
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI--PIMLV-GN 119
Query: 127 KQDLPN 132
K+DL
Sbjct: 120 KKDLHM 125
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GK+ +L + E + + TIG F T+E K I +WD GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D + + EL ++ + + + NK D
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSD 129
Query: 130 LPN 132
L +
Sbjct: 130 LAH 132
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-07
Identities = 40/213 (18%), Positives = 68/213 (31%), Gaps = 57/213 (26%)
Query: 4 SFTKLF-SRLFAKKEMR-----------ILMVGLDAAGKTT-ILYKLKLGEIVTTIPTIG 50
F K SRL ++R +L+ G+ +GKT L ++ +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--- 181
Query: 51 FNVETVEYKNISFTVW-DVGGQDK----IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEA 103
F + F W ++ + + L + +Q D SN + R+
Sbjct: 182 FKI---------F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 104 RDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------------AEITDKLGLHSLRQ 150
+ EL R+L + LLV N Q+ A NA ++TD L +
Sbjct: 231 QAELRRLLKSKPYENC-LLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLS--AATT 286
Query: 151 RHWYIQSTCATSGEGLY--EGLDWLSNNIANKA 181
H + L E L + +
Sbjct: 287 THISLDH----HSMTLTPDEVKSLLLKYLDCRP 315
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D+ + V + E+ R +E + L+ NK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 132
Query: 130 LPN 132
L
Sbjct: 133 LTT 135
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GK++++ + + TIG F + +E ++ +WD GQ++
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
R L +++ + + +D + + E + E ++ NK D+
Sbjct: 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129
Query: 132 N 132
Sbjct: 130 E 130
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG F +++ K I +WD G +
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G + V D EL + + V+++ NK D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 145
Query: 130 LPN 132
L +
Sbjct: 146 LRH 148
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++++G GKT+++ + T+G F ++TVE K I +WD GQ+
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y+++ +G+I V D + D + + + + +E DA LL+ NK D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLD 142
Query: 130 LPN 132
Sbjct: 143 CET 145
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT + Y+ G T TIG F V+ + I +WD GQ+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 73 KIRP-LWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ R + +HY++N ++FV D + + +E + L + D ++ NK
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKC 137
Query: 129 DLPN 132
DL +
Sbjct: 138 DLRS 141
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-07
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNI 61
+ + + F + ++ ++VG A GKT +L IPT+ N V+ K +
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78
Query: 62 SFTVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118
+ +WD GQ D++RPL + T + R + + +
Sbjct: 79 NLGLWDTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT 135
Query: 119 AVLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV K DL + + E + L
Sbjct: 136 PIILV-GTKLDLRDDKDTIEKLKEKKLT 162
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG F ++TVE K + +WD GQ+
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ + G+I V D D+ + V E+ R + L+ NK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCD 124
Query: 130 LPN 132
L +
Sbjct: 125 LKD 127
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++ +G + GKT+++ + T TIG F +T+ + + +WD GQ++
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
R L Y +++ + V D + + + D++ D ++++ NK DL
Sbjct: 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLS 132
Query: 132 N 132
+
Sbjct: 133 D 133
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN-VETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI + ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ + Y + +G + V N+ + + + R+++ R+ + D++ ++LV NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV--PMVLV-GNKS 118
Query: 129 DLPN 132
DL
Sbjct: 119 DLAA 122
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
+ R+ + G GK++++ + G + IPT+ + + T + D G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
+ + R I V R + + +++ + + E +++ NK
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKC 119
Query: 129 DLPN 132
D
Sbjct: 120 DESP 123
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDK 73
++++G GKT+++++ + TIG F + V K + VWD GQ++
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ L +++ + V D + + + RDE N + ++ NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 131 PNA 133
+
Sbjct: 131 EES 133
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-07
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+ L++G GK+ +L++ + + TIG F + + K + +WD GQ+
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + R Y++ G + V D R + + + + ++ + V+++ NK+D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKD 126
Query: 130 LPN 132
L
Sbjct: 127 LDA 129
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+ ++G GK++I+ + PTIG F +TV + F +WD GQ++
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ + + V D +D + EL E + V+ + NK DL
Sbjct: 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLS 141
Query: 132 N 132
+
Sbjct: 142 D 142
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-07
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G A GK++++ + G+ TIG F +TV + F +WD GQ++
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ Q I V D + + A+ EL R + + V+ + NK DL
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLA 124
Query: 132 N 132
N
Sbjct: 125 N 125
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+E+++ ++G GK++I+++ PTIG F +TV+Y + F +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
++ R L Y++ + I V D + + EL + V+ + NK
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNK 120
Query: 128 QDLPN 132
DL +
Sbjct: 121 CDLTD 125
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE-TVEYKNISFTVWDVGG 70
+ E+R+ ++G +GK++++++ G T + E V+ + + + G
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV-FAN 126
+ + +IFV D V +L + E A+ LV +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 127 KQDLPN 132
+ +
Sbjct: 119 RISASS 124
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-07
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
E+ + ++G AGK+ + K ++ P + ETV+++ + V D
Sbjct: 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
D R R Y + V + R D + L E + LL+ N
Sbjct: 78 DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135
Query: 127 KQDL 130
K D+
Sbjct: 136 KLDM 139
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-07
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G GKT+++ + + TIG F + V + ++ +WD GQ++
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L +++ + V D + RDE + + + +V NK DL
Sbjct: 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130
Query: 132 N 132
N
Sbjct: 131 N 131
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVGG 70
+E +++++G GK+ + + G V PTI + + VE + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
++ + Y +N QG V + + + + R+++ R+ + +++ ++LV NK
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILV-GNK 117
Query: 128 QDLPN 132
DL +
Sbjct: 118 CDLED 122
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-07
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GK+++L + + I TIG F + TVE + + +WD GQ+
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
+ R + Y++ T G+I V D E+ + R L+E D ++ NK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDD 125
Query: 131 PN 132
P
Sbjct: 126 PE 127
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-07
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
E+++ + G GK+ ++ + + PT+ T++ + +S + D GQ
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86
Query: 72 DKIRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
+ + R + + +G + V D DR + V+ ++ L + + ++LV NK
Sbjct: 87 E--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--TLILV-GNK 141
Query: 128 QDLPN 132
DL +
Sbjct: 142 ADLDH 146
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-07
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++VG + GKT ++ + K G TIG F ++T+E K + +WD GQ+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + + Y+++ G I D R V +++ + + V L+ NK D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSD 145
Query: 130 LPN 132
L
Sbjct: 146 LSE 148
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-07
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGG 70
KK ++I++VG A GKT +L GEI T +PT+ N ++Y + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 71 Q---DKIRPLWRHYFQNTQGLI--FVVDSND 96
Q D++RPL + ++ ++ F V++
Sbjct: 81 QEEYDRLRPL---SYADSDVVLLCFAVNNRT 108
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-06
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
+ +++++G GKT++ ++ GE PT+ ++ + V + D G
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD+ L + G + V + +LH + + V+LV NK
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV--PVVLV-GNK 138
Query: 128 QDL 130
DL
Sbjct: 139 ADL 141
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 71
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 129
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 130 -GNKSDLED 137
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 57
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + LLV
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 116 -GNKSDLED 123
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQD 72
+I+++G A+GKT++ TIG F + + N++ +WD+GGQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ Y QG++ V D + + + + + ++ E E + V LV NK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126
Query: 130 LPN 132
L +
Sbjct: 127 LEH 129
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
+++MVG GK+ + + E V PT Y + + +
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 67
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
D GQ+ + +YF++ +G + V + + R+++ R+ ++ + L+
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE---NVPFLL 124
Query: 124 FANKQDLPN 132
NK DL +
Sbjct: 125 VGNKSDLED 133
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
A + ++ + VG A GKT +L T +PT+ N V ++ +WD
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ +++RPL ++ I + + EL+ ++
Sbjct: 65 GQEDYNRLRPL---SYRGADVFILAFSLISKASYENVSKKWIP-----ELKHYAPGVPIV 116
Query: 122 LVFANKQDL 130
LV K DL
Sbjct: 117 LV-GTKLDL 124
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++++G AGK++++ + + + TIG F +T+ + F +WD GQ++
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
L Y++ I V D ++ A+ EL N + V+ + NK DL
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLL 130
Query: 132 N 132
+
Sbjct: 131 D 131
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVG 69
K ++ + VG A GKT +L + T IPT+ N V + ++ +WD
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
GQ ++RPL ++ + + + L ++LV
Sbjct: 66 GQEDYSRLRPL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV-GT 121
Query: 127 KQDLPN 132
K DL +
Sbjct: 122 KLDLRD 127
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--------KNISFTVWDVGG 70
++L++G GK+ + E G Y + S V+D+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-----HTYDRSIVVDGEEASLMVYDIWE 58
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
QD R L H + V D+ ++ E R +L R D++ ++LV NK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV--PIILV-GNK 115
Query: 128 QDL 130
DL
Sbjct: 116 SDL 118
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-06
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++++VG GK+T+ + + + ++ V+D+ Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 74 IRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ H Q + V DR +V E L +L V+LV NK D
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 120
Query: 130 LPN 132
L
Sbjct: 121 LAR 123
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
+++VG A GK++++ + G TIG F ++ +++ +WD GQ++
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ + Y++ Q + V + DR + + R+++ + D + NK DL
Sbjct: 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLL 122
Query: 132 N 132
+
Sbjct: 123 D 123
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-06
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+I++VG GKT +L+ +PT+ N ++ + I ++WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D +RPL + ++ ++ F + +
Sbjct: 69 DNVRPL---SYPDSDAVLICFDISRPE 92
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFT--VWDVG 69
F E+++ +VG ++GK+ ++++ G V P G + + S+ + D G
Sbjct: 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEG 75
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G +++ + ++FV D V L N E+ ++LV
Sbjct: 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV--PMVLV-GT 127
Query: 127 KQDLPNA 133
+ + A
Sbjct: 128 QDAISAA 134
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 10 SRLFAKKEMRI--LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISF 63
L+ + +R ++VG A GKT +L E +PT+ N V+ K +
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVEL 75
Query: 64 TVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
+WD GQ D++RPL + +T ++ + D
Sbjct: 76 ALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPD 110
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 37 LKLGEIVTTIPTIGFNVETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
L T + I F+ + + ++DVGGQ R W H F+ +IF +
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 96 DRDRVVEARDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ D+ + ++ +RM L + ++F NK D+
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
+I++VG GKT +L+ +PT+ N ++ + I ++WD G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D +RPL + ++ ++ F + +
Sbjct: 90 DNVRPL---SYPDSDAVLICFDISRPE 113
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG GKT +L L T +PT+ N E + + ++WD G D
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 73 KIRPLWRHYFQNTQGLI--FVVDSND 96
+RPL + ++ ++ F + +
Sbjct: 90 NVRPL---CYSDSDAVLLCFDISRPE 112
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY------------KNISF 63
+ L +G GKT++LY+ G+ I T+G F + V Y + I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAV 120
+WD G ++ R L +F++ G + + D + V +L + +
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPD 129
Query: 121 LLVFANKQDLPN 132
+++ NK DL +
Sbjct: 130 IVLCGNKSDLED 141
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ-- 71
++ ++VG A GKT +L +PT+ + TV K ++D GQ
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 72 -DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFA 125
D++RPL + T + + ++E EL++ LL+
Sbjct: 79 YDRLRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVP-----ELKEYAPNVPFLLI-G 129
Query: 126 NKQDLPNAMNAAEITDKLGLH 146
+ DL + + +
Sbjct: 130 TQIDLRDDPKTLARLNDMKEK 150
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
+ ++ ++VG A GKT+++ T IPT N V +V+ + + + D
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 70 GQ---DKIRPLWRHYFQNTQGLI--FVVDSNDRDRVVEARDELHRMLN--EDELRDA--- 119
GQ DK+RPL + NT + F V S + E+R
Sbjct: 77 GQDEFDKLRPL---CYTNTDIFLLCFSVVS---------PSSFQNVSEKWVPEIRCHCPK 124
Query: 120 --VLLVFANKQDLPNAMNAAEITDKLGLH 146
++LV + DL + DK
Sbjct: 125 APIILV-GTQSDLREDVKVLIELDKCKEK 152
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
+++VG A GKT +L + +PT+ N V+ K + +WD GQ D
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
++RPL + +T ++ + D + ++ + ++LV NK+DL
Sbjct: 88 RLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRQ 143
Query: 133 AMNAAEITDKLGLH 146
+ K+
Sbjct: 144 DEHTRRELAKMKQE 157
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ 71
+ +++++VG GKT++L G + PT+ + ++ K + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 72 ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
D++RPL ++ + L+ D + + + +N + +++V K
Sbjct: 93 DDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV-GCKT 148
Query: 129 DL 130
DL
Sbjct: 149 DL 150
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-05
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L F V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
GQ D++RPL + T + R + + E+R ++
Sbjct: 62 GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYP-----EVRHHCPNTPII 113
Query: 122 LVFANKQDLPNAMNAAEITDKLGLH 146
LV K DL + + E + L
Sbjct: 114 LV-GTKLDLRDDKDTIEKLKEKKLT 137
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN------------IS 62
+++L +G GKTT LY+ + I T+G F + V Y +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA 119
+WD GQ++ R L +F++ G + + D + V +L + +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE---NP 142
Query: 120 VLLVFANKQDLPN 132
+++ NK DLP+
Sbjct: 143 DIVLIGNKADLPD 155
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 19 RILMVGLDAAGKTTIL--YKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVW--DVG 69
++ +VG GK+ ++ + K + + T G V V +S ++ D
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
G D + Y+ I V D + + + L + E +LV AN
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV-AN 140
Query: 127 KQDLPN 132
K DLP
Sbjct: 141 KTDLPP 146
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 5e-04
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGG- 70
+ +++ G GK+T+L L + + + P T G NV E + + D G
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 71 -----QDKIRPLWRHYFQN----TQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAV 120
++ + +I++ D S +E + L ++ E +D
Sbjct: 225 LDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLP 282
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
LV NK D+ + N + ++++ A G G+
Sbjct: 283 FLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDL 325
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.98 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.98 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.98 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.98 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.97 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.95 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.93 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.93 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.93 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.91 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.9 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.89 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.89 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.89 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.88 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.88 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.88 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.88 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.88 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.88 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.88 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.88 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.87 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.86 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.86 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.86 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.85 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.85 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.85 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.85 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.85 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.84 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.83 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.82 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.81 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.81 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.8 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.78 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.77 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.75 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.75 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.74 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.74 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.73 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.72 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.71 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.71 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.7 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.7 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.69 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.68 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.68 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.65 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.63 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.62 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.61 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.6 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.6 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.58 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.57 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.55 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.51 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.48 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.39 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.32 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.1 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.04 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.97 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.94 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.94 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.9 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.88 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.82 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.75 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.74 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.66 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.6 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.4 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.21 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.14 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.13 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.1 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.06 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.93 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.81 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.77 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.72 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.7 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.66 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.63 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.62 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.62 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.58 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.51 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.49 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.48 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.47 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.46 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.45 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.44 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.43 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.42 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.42 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.41 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.41 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.33 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.33 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.32 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.32 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.32 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.31 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.31 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.31 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.31 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.28 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.28 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.27 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.26 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.26 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.26 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.25 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.25 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.24 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.24 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.23 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.23 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.22 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.22 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.22 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.2 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.19 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.19 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.18 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.18 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.17 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.17 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.17 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.17 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.17 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.17 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.17 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.16 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.16 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.16 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.16 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.16 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.16 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.16 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.16 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.16 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.15 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.15 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.15 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.15 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.15 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.15 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.15 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.14 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.14 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.13 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.12 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.12 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.12 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.12 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.12 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.12 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.11 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.11 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.11 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.11 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.1 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.1 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.09 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.09 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.08 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.08 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.07 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.06 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.06 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.06 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.05 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.05 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.05 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.03 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.03 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.03 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.03 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.02 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.02 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.01 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.01 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.0 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.0 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.99 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.97 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.97 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.96 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.95 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.92 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.92 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.92 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.92 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.91 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.91 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.9 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.9 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.9 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.89 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.89 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.89 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.88 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.87 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.87 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.86 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.86 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.85 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.85 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.85 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.84 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.84 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.84 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.84 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.83 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.83 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.82 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.82 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.82 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.82 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.82 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.81 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.81 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.81 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.79 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.78 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.77 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.77 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.75 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.75 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.73 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.72 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.7 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.69 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.69 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.69 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.69 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.68 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.67 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.67 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.66 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.66 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.65 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.64 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.63 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.62 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.62 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.61 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.61 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.58 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.57 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.57 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.55 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.53 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.52 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.52 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.51 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.5 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.47 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.46 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.45 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.43 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.42 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.42 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.42 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.41 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.41 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.4 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.38 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.37 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.37 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.34 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.34 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.33 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.32 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.32 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.32 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.3 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.29 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.29 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.28 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.28 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.28 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.27 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.27 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.27 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.25 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.25 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.24 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.24 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.24 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.21 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.19 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.18 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.18 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.17 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.16 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.16 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.08 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.08 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.08 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.07 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.07 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.06 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.06 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.05 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.04 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.02 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.01 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.99 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.96 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.96 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.93 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.93 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 95.93 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.92 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.92 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.91 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.88 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.88 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.88 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.86 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.86 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.84 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.83 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.8 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 95.78 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.78 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.77 |
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=218.12 Aligned_cols=179 Identities=57% Similarity=1.013 Sum_probs=157.4
Q ss_pred CcchHHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
||..+++++++.+. ++.++|+++|++|+|||||++++.++.+....+|++.....+...+..+.+||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89899999999988 89999999999999999999999988887778888888888888889999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999988765557899999999999988777777877777666666778999999
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|++|.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=218.77 Aligned_cols=178 Identities=47% Similarity=0.880 Sum_probs=154.5
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..|+++++ .+.++.++|+++|++|+|||||++++.++.+....+|++.....+..++..+.+||+||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999998 888999999999999999999999999888777788888888788888999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++++++++....|+.++.......+.|+++|+||+|+.+....+++.+.+....+...+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999887655568999999999999877667777777665545566789999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|+++++++|.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=218.99 Aligned_cols=180 Identities=52% Similarity=0.976 Sum_probs=158.1
Q ss_pred CcchHHHHHH--hhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 1 MGLSFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
||..++++++ +.+. ++.++|+++|++|+|||||++++..+.+....||++.....+...+..+.+|||||+++++..
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6766666666 6777 889999999999999999999999888887888988888888888999999999999999999
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.......++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999888766678999999999999887777778777776666667789999
Q ss_pred ecccCCCCHHHHHHHHHHHhhcc
Q 030187 158 TCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+||++|.|+++++++|.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=218.37 Aligned_cols=175 Identities=81% Similarity=1.313 Sum_probs=152.5
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
..++++.+.++.++|+++|++|+|||||++++.++.+....||++.....+...++.+.+||+||+++++..+..+++++
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 45577788889999999999999999999999998888778898888778888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999999999988776667899999999999988777778888887766666788999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
+++++++|.+.+.+|
T Consensus 178 i~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 178 LYDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=214.07 Aligned_cols=178 Identities=47% Similarity=0.877 Sum_probs=148.0
Q ss_pred CcchHHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
|| .|+ .+.+.+. ++.++|+++|++|+|||||++++.++......||++.....+..++..+++||+||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 56 444 4555555 78899999999999999999999988866777888888888888899999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++++++....|+.++.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999988875557899999999999988777777777776555556778999999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=205.16 Aligned_cols=166 Identities=57% Similarity=1.014 Sum_probs=150.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
++.++|+++|++|+|||||++++.++.+....||.+.....+......+.+||+||++++...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 45799999999999999999999999888888899988888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
++++++.....++..++......+.|+++|+||+|+.+....+++...++...+...+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999988776557899999999999988777777877777666666788999999999999999999999
Q ss_pred HHhhcc
Q 030187 175 NNIANK 180 (181)
Q Consensus 175 ~~l~~~ 180 (181)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=210.16 Aligned_cols=173 Identities=47% Similarity=0.843 Sum_probs=149.0
Q ss_pred HHHhhhc--cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 8 ~~~~~~~--~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
++.+... ++.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+||+||+++++..+..+++++
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 3444445 57899999999999999999999998877778888888777888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+++++++.....|+.+++......+.|+++|+||+|+.+....+++.+.++...+...++++++|||++|.|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 99999999999999999999998887765557899999999999987766677777776655556678999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 165 VQDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=206.32 Aligned_cols=163 Identities=92% Similarity=1.407 Sum_probs=144.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||+++++..+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887778888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+++.....|+..+......++.|+++|+||+|+.+....+++...++...+...+++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999888766667899999999999988777777877777666666778999999999999999999999988
Q ss_pred hcc
Q 030187 178 ANK 180 (181)
Q Consensus 178 ~~~ 180 (181)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=206.38 Aligned_cols=165 Identities=38% Similarity=0.610 Sum_probs=140.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+..+++.+.+||+||+++++..+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 44567899999999999999999999988877788888888888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------ccCcceEEEEecccCCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++++++....|+..+.......++|+++|+||+|+.+....+++.+.+.... ....++++++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999988765557899999999999987666677766655432 233567899999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|++|.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=220.12 Aligned_cols=160 Identities=17% Similarity=0.354 Sum_probs=121.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.+||+++|++|+|||||+++|..+.+. ...||++.++.. +.. ..+.+++|||+|+++|+.+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 346799999999999999999999988876 456788766543 222 348899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++++|+++..|+..+.... .+++|+++||||+|+.+. ...++..+ .++..+++|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999998876543 368999999999998753 22222211 12223457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|+.|++.|.+
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=204.03 Aligned_cols=165 Identities=47% Similarity=0.868 Sum_probs=144.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||+++|.++.+....+|.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34577999999999999999999999998877788888888788888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999999887655578999999999999887677777777766656667789999999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+.+
T Consensus 177 l~~~l 181 (181)
T 2h17_A 177 MMSRL 181 (181)
T ss_dssp HHTC-
T ss_pred HHhhC
Confidence 98653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=206.98 Aligned_cols=165 Identities=29% Similarity=0.606 Sum_probs=133.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||++++.++.+....||++.....+..+++.+.+|||||+++++..+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 44677999999999999999999999988777778888777778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------c---cCcceEEEEecc
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------L---RQRHWYIQSTCA 160 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 160 (181)
|+++++++.....|+.+++......++|+++|+||+|+.+....+++.+.+.... + ...++++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999988765556899999999999987666666666554321 1 124678999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
++|.|++++|++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=205.02 Aligned_cols=168 Identities=30% Similarity=0.659 Sum_probs=146.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..++.++|+++|++|+|||||+++|.++.+. ...+|++..+..+...++.+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3456799999999999999999999988775 567888888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....|+..++......+.|+++|+||+|+......+++...+........+++++++||++|.|++++|+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999999988765557899999999999987766677777776655556678899999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999987653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=206.36 Aligned_cols=168 Identities=36% Similarity=0.653 Sum_probs=143.4
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccc--cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.....+|+++|++|+|||||+++|.+..+... .+|++.....++...+.+.+|||||++++...+..+++++|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 4455778999999999999999999999887653 78999888888889999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEeccc
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (181)
+|||++++++|.....|+..++..... .++|+++|+||+|+......+++...++.... +..+++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999988775322 27899999999999988777788777775544 5567899999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++++|++|.+.+.+
T Consensus 172 ~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=216.47 Aligned_cols=168 Identities=92% Similarity=1.400 Sum_probs=148.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
..++.++|+|+|++|+|||||+++|.+..+....||++..+..+...++.+++|||||++.+...+..+++.+|++|+||
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34567899999999999999999999998887788999999899999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++|.....++..++.....+++|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+.
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999988776678999999999999988888889888888877778899999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|.+.+.++
T Consensus 321 l~~~l~~~ 328 (329)
T 3o47_A 321 LSNQLRNQ 328 (329)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhc
Confidence 99988754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=199.54 Aligned_cols=167 Identities=43% Similarity=0.777 Sum_probs=141.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...+.++|+++|++|+|||||+++|.+.. .....+|.+.....+...+..+.+||+||++++...+..+++++|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34577999999999999999999999887 3456678888877788888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999999999999999988876554 6799999999999987766677776665444445578999999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 177 l~~~l~~~i~~ 187 (190)
T 2h57_A 177 GVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=191.52 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=105.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.+||+++|++|+|||||++++.+.......++.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776555555554432 2222 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++++....|+..+......+++|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999999887666678999999999998754221 11111111 112357999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|.+.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=189.27 Aligned_cols=164 Identities=21% Similarity=0.395 Sum_probs=125.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+.++|+++|++|+|||||++++.+..+. ...++.+.... .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4589999999999999999999988765 34566665442 3333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++++++.....|+..+.... .++.|+++|+||+|+.......++............+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999988887776543 3589999999999986542111111001001111234579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
++|.+.+.+|
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999988764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=189.59 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=126.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.++.+. ...+|.+..+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 346799999999999999999999977754 34556665542 233343 78899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHH
Confidence 999999999999999998888776655689999999999986532 222222111 1224479999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|+.|.+.+.++
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=188.99 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=114.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEc--CEEEEEEEcCCCCC--ccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~ 88 (181)
++.++|+++|++|+|||||+++|.+..+....++.+.+. ..+... .+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467899999999999999999999988765555555443 334443 36889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCH
Confidence 9999999999999999888877665444689999999999997642 2222211 1 1112357999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=193.89 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=124.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+.++.++|+++|++|+|||||+++|.+..+.. ..+|.+..+.. +....+.+.+||+||++++...+..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 445678999999999999999999999887653 34555544322 23356889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++++.+..|+..+.......++|+++|+||+|+..... ..+.. .+ ....+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KL----AESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HH----HHHhCCeEEEEeCCCCCC
Confidence 999999999999999999998888776667899999999999875322 12211 11 112235799999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987643
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=189.09 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=127.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.+||+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 3456799999999999999999999987754 344555544422 2333 36678899999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEeccc-CCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCAT-SGEG 165 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 165 (181)
++|||+++++++..+..|+..+.......++|+++|+||+|+.+. ...++...... ..+++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999998888776555578999999999998753 22222211111 122469999999 9999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|+.|.+.+.++
T Consensus 169 v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=184.36 Aligned_cols=158 Identities=14% Similarity=0.230 Sum_probs=121.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+.+||+++|++|+|||||++++.++.+.. ..+|.+.....+...+ +.+++|||+|+++++ +++++|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45578999999999999999999999888654 4455443333444444 788899999999887 778899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|||++++++|+.+..|+..+.......+.|+++|+||+|+.. ....++........ ..++|+++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----KRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----TTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----CCCeEEEecCCCCCC
Confidence 9999999999999999888887765556899999999999842 12222222111100 124789999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|.+.+.+
T Consensus 167 v~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 167 VERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-32 Score=185.11 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=124.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999987765 344565544432 222 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++...... . ..+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-Q---WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H---TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-H---ccCCcEEEecCCCCCCHHHH
Confidence 9999999999998888777665444689999999999997542 2222222111 0 11457999999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=187.06 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=125.2
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEE-----EEcCEEEEEEEcCCCCCcc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 75 (181)
......+||+++|++|+|||||++.+.+..... ..+|++.++... +...+.+++|||||++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 344567999999999999999997776544332 234555444322 2235789999999999999
Q ss_pred ccccccccCccEEEEEEECC------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (181)
..+..+++++|++++|||++ +.+++..+..|+.++ .....++|+++|+||+|+.+....+++.+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 456777777777666 233468999999999999887666666554443
Q ss_pred Ccce-EEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 150 QRHW-YIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 150 ~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.++ +++++||++|.|++++|++|.+.+.++
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 234 689999999999999999999988653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=185.62 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=124.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 45789999999999999999999988764 33445554432 23333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999999999888887765554689999999999986532 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|++|.+.+.+|
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=184.47 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=114.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEEEEEEc--CEEEEEEEcCCCCCccc-cccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++.+..... ..++.......+... .+.+.+||++|++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998765432 222333333344444 47889999999999876 67778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+.......++|+++|+||+|+.+. ...++... + .+..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H----HHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998877655568999999999998743 22222221 1 112245799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-32 Score=187.61 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=127.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEE--EE--cCEEEEEEEcCCCCCcccccccc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
.+......++.++|+++|++|+|||||+++|.+..+. ...++.+.++... .. ..+.+.+||+||++++...+..+
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 3444445567899999999999999999999988864 4566777655432 22 45789999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++++|++++|+|+++++++..+..|+..+... ..+++|+++|+||+|+.+. ...++..+.. +..+++++++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~S 166 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETS 166 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEe
Confidence 99999999999999999999998887776543 2357999999999998742 2233332222 12346899999
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|++|.|+++++++|.+.+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=188.34 Aligned_cols=159 Identities=20% Similarity=0.365 Sum_probs=98.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|++.++ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35689999999999999999999987764 3455666544 3444544 88999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+... ..++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999998887776543 23579999999999997532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-32 Score=186.93 Aligned_cols=161 Identities=19% Similarity=0.407 Sum_probs=118.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988864 445666665543 3334 3689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ..++... +. +..+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-LA----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-HH----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999999988888777655332 578999999999997542 2222211 11 11234689999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
+++++++|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=183.97 Aligned_cols=160 Identities=20% Similarity=0.353 Sum_probs=125.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.++|+++|++|+|||||+++|.++.+.. ..++.+..+. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999877653 3456555443 3333 357899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|+|+++++++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999988887776543 3589999999999986532 222222211 123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-32 Score=185.98 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=128.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+..+.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 3456799999999999999999999988764 34556655543 23344 36899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||+++++++..+..|+..++......+.|+++|+||+|+.+... .++. ..+. ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAFG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH----HHcCCeEEEecCCCCCCH
Confidence 99999999999999999988886655556899999999999875322 2222 1111 123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=184.27 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=122.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||+++|.+..+.. ..+|..... ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999887643 334443322 223333 3668899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||+++++++..+..|+..+.......+.|+++|+||+|+.......+....+.. ..+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877655578999999999999764322222222211 123468999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=186.48 Aligned_cols=162 Identities=18% Similarity=0.316 Sum_probs=124.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--eeEEEEEEcC---EEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.++.++|+++|++|+|||||+++|.+..+. ...+|++ .....+...+ +.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 356799999999999999999999988764 3445665 3344555544 899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|||++++++++.+..|+..+..... ...+|+++|+||+|+.+. ...++..... +..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCC
Confidence 9999999999999888877766544211 124458999999998653 2222222111 112357899999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|++|.+.+.++
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=182.90 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=127.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999988764 44556555443 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 9999999999999998888876655456899999999999965432 22222111 12345799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=188.86 Aligned_cols=162 Identities=20% Similarity=0.374 Sum_probs=128.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEc-----------CEEEEEEEcCCCCCcccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~ 77 (181)
.....++|+++|++|+|||||+++|.+..+. ...+|++.++. .+... .+.+.+||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3456799999999999999999999987764 44567776654 23333 468999999999999999
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+..+++++|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+. ...++..... ...++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence 99999999999999999999999999888887766554468999999999998753 2222222211 1123468
Q ss_pred EEecccCCCCHHHHHHHHHHHhhc
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=188.37 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=121.6
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
......+||+++|++|+|||||+++|.++.+.. ..+|++..+.. ++...+.+.+||++|++++...+..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 344567999999999999999999999888654 35676665532 23345889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc
Q 030187 88 LIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 152 (181)
+++|||+++++++... ..|+..+... . ++.|+++|+||+|+.+. ...++... .++..+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~ 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY-C-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLG 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH-C-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcC
Confidence 9999999999999994 5555554433 2 58999999999998642 22221111 111223
Q ss_pred e-EEEEecccCCCC-HHHHHHHHHHHhhcc
Q 030187 153 W-YIQSTCATSGEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~-~~~~~Sa~~~~~-v~~~~~~l~~~l~~~ 180 (181)
+ +|++|||++|.| ++++|+.|.+.+.++
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 4 799999999998 999999999987654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=183.86 Aligned_cols=161 Identities=21% Similarity=0.309 Sum_probs=122.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.++.+||+++|++|+|||||++++.++.+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 346699999999999999999999988865 345666655433 223 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceE-EEEecccCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (181)
+|||+++++++..+...|...+... .++.|+++|+||+|+.+. ...++...... ..++. ++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCC
Confidence 9999999999999855555544432 357999999999998742 22222221111 11223 8899999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-32 Score=189.27 Aligned_cols=160 Identities=21% Similarity=0.374 Sum_probs=121.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|++.++ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999988764 3456655443 3455544 79999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcce-EEEEecccCCCCH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL 166 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (181)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999999988887765533 357999999999999753 2223322211 11234 7899999999999
Q ss_pred HHHHHHHHHHhhcc
Q 030187 167 YEGLDWLSNNIANK 180 (181)
Q Consensus 167 ~~~~~~l~~~l~~~ 180 (181)
+++|++|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=185.10 Aligned_cols=161 Identities=19% Similarity=0.373 Sum_probs=125.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...++.+.++. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345689999999999999999999988764 34556665443 3333 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 9999999999999888877766543 23579999999999987532 222221111 112347999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 030187 167 YEGLDWLSNNIANK 180 (181)
Q Consensus 167 ~~~~~~l~~~l~~~ 180 (181)
++++++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=180.43 Aligned_cols=160 Identities=23% Similarity=0.415 Sum_probs=120.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.++ ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4589999999999999999999988764 3445555443 334433 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++++++..+..|+..+.... .++.|+++|+||+|+.......+....+. +..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 999999999988888877665532 25789999999999954332222111111 1123468999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
++|.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=183.31 Aligned_cols=161 Identities=19% Similarity=0.346 Sum_probs=125.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||++++.+..+.. ..++++..+ ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999887653 345555443 333333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.+++....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999988887766543 3589999999999996532 222322211 12345799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 162 VKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=182.80 Aligned_cols=159 Identities=19% Similarity=0.325 Sum_probs=117.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999988764 34566665543 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 999999999999988877665432 22478999999999987532 222222211 1224578999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=180.66 Aligned_cols=163 Identities=13% Similarity=0.283 Sum_probs=124.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+. ...++.+..+ ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345689999999999999999999987754 4456666554 3344444 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++....... ..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCC
Confidence 99999999999998888777665432 22578999999999997432 23333222110 223468999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=183.34 Aligned_cols=158 Identities=22% Similarity=0.401 Sum_probs=123.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46699999999999999999999988764 3445555443 4455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+.... ++.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999988887775532 5799999999999875422 12221111 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-32 Score=184.57 Aligned_cols=159 Identities=18% Similarity=0.343 Sum_probs=124.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+.++ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999988764 3455655443 334433 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999998888877765543 578999999999986532 222222211 1224579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
+++++|.+.+.+|
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-32 Score=189.29 Aligned_cols=159 Identities=19% Similarity=0.334 Sum_probs=124.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.++.+. ...+|++.++. .+...+ +.+++||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35689999999999999999999988765 45566665543 344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-FS----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888877665432 3578999999999986432 2222221 11 1223568999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=184.38 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=124.9
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34567999999999999999999999887643 345555443 233333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999998888876665432 2578999999999996532 222222211 11345799999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~i~~~ 179 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQN 179 (179)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=186.72 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=120.7
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--eeEEEEEEc--CEEEEEEEcCCCCCccc-cccccccCc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNT 85 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~ 85 (181)
......++|+++|++|+|||||+++|.+.... ...++.. .....+... .+.+.+||++|++++.. ++..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34456799999999999999999999754321 2223222 223334443 47889999999998775 677888999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|||++++++|..+..|+.++.......++|+++|+||+|+.+.. ..++... +. +..+++++++||++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCC
Confidence 9999999999999999999998887664444579999999999997532 2222221 11 112357999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|+.|++.+.++
T Consensus 173 ~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRLR 189 (195)
T ss_dssp BSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-32 Score=192.57 Aligned_cols=166 Identities=19% Similarity=0.371 Sum_probs=116.5
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
++...++.++|+++|++|+|||||+++|.+..+. ...+|.+.++ ..+... .+.+.+||+||++++...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3455567899999999999999999999988764 3445555433 334443 4789999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-------C-CCHhHHHhhhCCCcccCcceEEE
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-------A-MNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+|++++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+ . ...++. ..+ ....+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFG-EKL----AMTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHH-HHH----HHHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHH-HHH----HHHcCCeEE
Confidence 99999999999999999988877655432 225789999999999852 1 111111 111 112345799
Q ss_pred EecccCCCCHHHHHHHHHHHhhccC
Q 030187 157 STCATSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~~~ 181 (181)
++||++|.|++++|++|.+.+.+++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~~ 199 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKRT 199 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC--
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=190.49 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEEc--CEEEEEEEcCCCCCcccccccccc
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
++++...++.++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||+++ ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 445555677899999999999999999999988765 345566554432 3333 47899999999998 777888999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++... +. ...+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-LA----TELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH-HH----HHhCCeEEEECCC
Confidence 99999999999999999999888877766444468999999999998753 22222211 11 1124579999999
Q ss_pred CCC-CHHHHHHHHHHHhhc
Q 030187 162 SGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~-~v~~~~~~l~~~l~~ 179 (181)
+|. |++++|++|.+.+.+
T Consensus 173 ~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 999 999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=187.98 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=127.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEcC--EEEEEEEcCCCCCccccccccccCc
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
......+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+...+ +.+.+||+||++++...+..+++++
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 34455677999999999999999999999887643 345555443 2333433 6899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTR 161 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCC
Confidence 9999999999999999999988887776555689999999999987532 222322221 123457999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++|++|.+.+.+
T Consensus 162 ~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 162 ANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=185.15 Aligned_cols=160 Identities=20% Similarity=0.377 Sum_probs=125.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45689999999999999999999988754 3445555443 3445544 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+... +. ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEeCCCCCCHH
Confidence 9999999999999988876664432 357899999999998764322 22211 11 1123468999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=180.88 Aligned_cols=159 Identities=21% Similarity=0.366 Sum_probs=124.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+. ...++.+..+. .+... ...+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999988754 34566665543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 99999999999988877766654 2336899999999999975322 222221 11 1224579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=184.03 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=121.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEc---CEEEEEEEcCCCCCccc-cccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 89 (181)
+++.++|+++|++|+|||||+++|.++.+....++.......+... .+.+.+|||||++++.. .+..+++++|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999999988776666666666666665 68999999999999988 7888899999999
Q ss_pred EEEECCCcc-cHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 030187 90 FVVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------- 144 (181)
Q Consensus 90 lv~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------------------- 144 (181)
+|+|+++.+ ++.....+|...+.. ....++|+++|+||+|+........+.+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998753 466677777666543 1235789999999999987654433322111
Q ss_pred -CCccc---------C--cceEEEEecccCC------CCHHHHHHHHHHHh
Q 030187 145 -LHSLR---------Q--RHWYIQSTCATSG------EGLYEGLDWLSNNI 177 (181)
Q Consensus 145 -~~~~~---------~--~~~~~~~~Sa~~~------~~v~~~~~~l~~~l 177 (181)
..... . .+++|++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00000 1 1788999999999 99999999998764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=179.13 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=118.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+.+||+++|++|+|||||++++.++.+....||++..+. .+... .+.+++||++|+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 4679999999999999999999999888766777765442 23333 47899999999987 4577889999999
Q ss_pred EECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||+++++++..+..|+..+ ......+++|+++|+||+|+.. ....++....... ..+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCC
Confidence 9999999999998864333 2223336899999999999842 1222222221110 1246899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=185.90 Aligned_cols=159 Identities=20% Similarity=0.375 Sum_probs=125.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999988765 3445655444 344444 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999988877665432 3579999999999997632 2222221 11 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=184.97 Aligned_cols=160 Identities=19% Similarity=0.325 Sum_probs=125.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 34689999999999999999999988765 345566655432 333 3578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888887766543 3579999999999987532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=184.85 Aligned_cols=160 Identities=21% Similarity=0.343 Sum_probs=123.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee--EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+++|.+..+.. ..+|.+.+ ...+... .+.+++||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 356899999999999999999999887643 34454433 3344444 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEA-FA----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877765432 3589999999999996532 2222221 11 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=183.52 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=124.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999877643 334444332 233333 36699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....|+..+.......+.|+++|+||+|+.+... .++... +. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-LA----EEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-HH----HHhCCCEEEecCCCCcCHHHH
Confidence 99999999999999988887765556899999999999865322 222211 11 112346899999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=183.81 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=124.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999988765 3445555443 3344444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+... ....+.... ....+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999888876654432 258999999999998643 222222211 11234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=185.50 Aligned_cols=159 Identities=18% Similarity=0.372 Sum_probs=124.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 34689999999999999999999988764 34566665543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-LA----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHH-HH----HHCCCeEEEEECCCCCCHH
Confidence 999999999999988887776543 23578999999999997642 2222211 11 1123479999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=186.27 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=119.4
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.+||+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+++||++|+++++.. ..+++++|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 3456799999999999999999999988765 34566665542 2223 3478999999999998875 6788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecc-cCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCA-TSG 163 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 163 (181)
++|||++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++..+.. ...+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence 999999999999999988877665321 257899999999998643 2222221111 112357999999 899
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|+.|.+.+.++
T Consensus 171 ~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 171 EHVQHVFHEAVREARRE 187 (187)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999988653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=182.70 Aligned_cols=162 Identities=17% Similarity=0.250 Sum_probs=124.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+.+... +... .+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 456799999999999999999999988754 345566554433 3333 37899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+..... .++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999998888877665432 124789999999999975432 222222111 0234568999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 030187 165 GLYEGLDWLSNNIAN 179 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~ 179 (181)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=184.31 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=126.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4567999999999999999999999887643 3445544432 23333 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++.....|+..+.......++|+++|+||+|+.+. ...++..... +..+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999988888777655468999999999998653 2223332222 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=189.18 Aligned_cols=160 Identities=19% Similarity=0.384 Sum_probs=124.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+.+.. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35689999999999999999999987754 33344443332 3332 5689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-LA----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEECCCCCCHH
Confidence 999999999999988877666543 33589999999999986532 2222211 11 1123579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=185.18 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=122.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCcc-ccccccccC
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQN 84 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~-~~~~~~~~~ 84 (181)
..+.++.++|+++|++|+|||||+++|.++.+. ...++.+.++ ..+...+ +.+.+||+||++++. ..+..++++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 345567899999999999999999999988765 3455555443 3444443 789999999999998 788999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAKN 168 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSSS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCCc
Confidence 99999999999999999999988887765545689999999999996532 222221 111 11234689999999
Q ss_pred C---CCHHHHHHHHHHHhhc
Q 030187 163 G---EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~---~~v~~~~~~l~~~l~~ 179 (181)
| .|++++|++|.+.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGGSCHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHhh
Confidence 9 9999999999887754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=187.09 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=118.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cccccCcccee--EEEEEEc--CEEEEEEEcCCCCC-ccccccccccCccE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|+|||||+++|.+.. +....++++.+ ...+... .+.+.+|||+|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999998643 33333344433 2334444 36788999999887 55566778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|+.+..|+..+......+++|+++|+||+|+.+. ...++. ..+ +...+++|++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~----a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH----HHHcCCEEEEEeCCCCCC
Confidence 9999999999999999988877765434457999999999998643 222211 111 112345799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
|+++|++|.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-32 Score=190.74 Aligned_cols=160 Identities=21% Similarity=0.428 Sum_probs=124.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc------------CEEEEEEEcCCCCCcccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~~ 79 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|++..+. .+... .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45689999999999999999999987764 33455554432 23222 57899999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++++|++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999999998888776555444689999999999987532 222222111 112346899
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+||++|.|++++|++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=180.13 Aligned_cols=158 Identities=21% Similarity=0.374 Sum_probs=123.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEcC-------------------------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN------------------------------- 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~------------------------------- 60 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|++..+.. +...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999988764 344565544432 33222
Q ss_pred --------EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
..+.+||+||++++...+..+++++|++++|+|++++.++..+..|+..+... ...|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999999999998888777654 2499999999999432
Q ss_pred C-CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 133 A-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 133 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
. ...+++.+... ..+++++++||++|.|+++++++|.+.+.++
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2 23333332221 1345799999999999999999999988754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=181.50 Aligned_cols=157 Identities=16% Similarity=0.227 Sum_probs=120.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 467999999999999999999999887653 4566655442 2222 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhH---HHhhhCCCcccCcc
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE---ITDKLGLHSLRQRH 152 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 152 (181)
|||+++++++..+. .|+..+.. . .++.|+++|+||+|+.+. ...++ +.+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQE-F-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH-H-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-H-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 99999999999984 45444432 2 257999999999998742 11111 122221 1
Q ss_pred eEEEEeccc-CCCCHHHHHHHHHHHhhcc
Q 030187 153 WYIQSTCAT-SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~~~~~~Sa~-~~~~v~~~~~~l~~~l~~~ 180 (181)
.+++++||+ ++.|++++|+.+.+.+.+|
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 479999999 6899999999999988765
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=182.30 Aligned_cols=159 Identities=18% Similarity=0.371 Sum_probs=124.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+. ...++.+.+. ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999987754 3455655444 3344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999888887765532 25799999999999865322 22222111 1224579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=175.00 Aligned_cols=161 Identities=19% Similarity=0.294 Sum_probs=123.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+... .+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 45899999999999999999999887643 3444443332 23333 46789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....|+..+.......+.|+++++||+|+.......+....+. +..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999988887766554445799999999999876432222211111 11234689999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 158 ~l~~~~~~~ 166 (166)
T 2ce2_X 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=186.25 Aligned_cols=161 Identities=21% Similarity=0.282 Sum_probs=123.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE--c--C-EEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--N-ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~-~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..+||+++|++|+|||||+++|.++.+. ...+|.+........ . . +.+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 346799999999999999999999987764 335566655544433 1 2 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+....+. ...+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL----KGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT----TTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH----HHcCCcEEEEecCCCCCH
Confidence 999999999999999887776665432 2468999999999987642 1122222222 224567999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (218)
T 4djt_A 163 GLPFLHLARIFTG 175 (218)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=181.26 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=110.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.++.++|+++|++|+|||||++++.++.+. ...+|++..+. .++...+.+++||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 356799999999999999999999987754 33445443221 23334577889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcccCcce-EEE
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRHW-YIQ 156 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 156 (181)
+|+|++++++++.+...|...+.... ++.|+++|+||+|+.+... .++... + ....+. +++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~ 158 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-L----KKLIGAPAYI 158 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-H----HHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-H----HHHcCCCEEE
Confidence 99999999999998843434333322 4789999999999865321 111111 1 111232 789
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++|++|.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=183.69 Aligned_cols=163 Identities=20% Similarity=0.339 Sum_probs=121.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||+++|.+..+. ...++.+.+. ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 446689999999999999999999988764 3445555443 3344443 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.. ..++... +... ..+.+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~~---~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEK-FAQQ---ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHT---STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-HHHh---cCCCeEEEEeCCCCCCH
Confidence 999999999999988877655433 333579999999999986532 2222221 1111 12457999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 030187 167 YEGLDWLSNNIANKA 181 (181)
Q Consensus 167 ~~~~~~l~~~l~~~~ 181 (181)
+++|++|.+.+.++.
T Consensus 178 ~~l~~~l~~~i~~~~ 192 (192)
T 2il1_A 178 DEIFLKLVDDILKKM 192 (192)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987763
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=186.48 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=120.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45689999999999999999999988765 3445555433 3455554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877765432 3578999999999986532 222222111 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=178.10 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=121.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3466899999999999999999999887653 4556554432 33333 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce-
Q 030187 90 FVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW- 153 (181)
Q Consensus 90 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~- 153 (181)
+|||+++++++..+. .|+..+... .++.|+++|+||+|+.+.. ..++... + .+..+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 167 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-L----AKEIGAC 167 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-H----HHHcCCc
Confidence 999999999999988 455444432 2479999999999997531 1111111 0 011122
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+..
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999998764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=186.03 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=118.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccee--EEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35699999999999999999999988764 334555533 33444444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888877654322 579999999999986432 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=181.16 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=121.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+. ...+|.+..... +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999987764 344555544432 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|++++++++....|+..+.... ..++.|+++|+||+|+..... ..+.. .+ ....+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-AL----ARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-HH----HHHhCCeEEEecCCCCcCHHH
Confidence 99999999988888876665432 225789999999999865422 11211 11 112345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
++++|.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=181.45 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=122.9
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||+++|.+..+. ...++++..+ ..+...+ +.+.+||+||++++...+..+++++|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999988764 3445555443 4455555 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.......+....+. ...+++++++||++|.|++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988888777665432 24789999999999954322111111111 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~~~~ 182 (213)
T 3cph_A 171 EIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=177.08 Aligned_cols=162 Identities=14% Similarity=0.245 Sum_probs=112.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc---CEEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||++++.+..+. ...++.+.+. ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 456799999999999999999999988754 3445554333 333333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++...... ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999999988877765532 22578999999999985431 2222222111 0124468999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=179.30 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=119.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+..++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4567899999999999999999999887653 3455554432 23343 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------ccCcce-EEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRHW-YIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~S 159 (181)
+|||+++++++......|...+.... ++.|+++|+||+|+.......+......... ....+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998554444444322 5799999999999875422211111111000 011223 789999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=180.73 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=117.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++.+||+++|++|+|||||++++..+.+. ...+|.+..+. .+. ...+.+.+||+||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 34467899999999999999999999987765 33445443322 222 244778899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcc-eEEEE
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRH-WYIQS 157 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~ 157 (181)
+++|||++++.+++.....|...+.... ++.|+++|+||+|+.......+........ ..+..+ .++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999999844444444332 579999999999987642211111111100 001112 36999
Q ss_pred ecccCCCCHHHHHHHHHHHh
Q 030187 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l 177 (181)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=177.75 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=113.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCcc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
+.+..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++.+|
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3445677999999999999999999999877543 3344443332 23333 367999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.... ..++..+.. +..+++++++||++|.|
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 999999999999999988887776554433578999999999987632 222222211 11234689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 170 i~~l~~~l~~~~~~ 183 (190)
T 3con_A 170 VEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=181.90 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=114.7
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccc----eeEEEEE-EcCEEEEEEEcCCCCCccccc---ccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYFQ 83 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~ 83 (181)
...++.+||+++|++|+|||||++++.+........+.+ .....+. ...+.+++||++|+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 456678999999999999999999887754332221111 1111222 345899999999999988776 89999
Q ss_pred CccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCcccCcce
Q 030187 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHW 153 (181)
Q Consensus 84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (181)
++|++++|||++++ +++..+..|+..... ..++.|+++|+||+|+.+... ...+.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 566666666666532 225899999999999875321 122222 222222225578
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhh
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+|++|||++ .|++++|+.+++.+.
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred ceEEEEech-hhHHHHHHHHHHHhC
Confidence 899999999 999999999998763
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=188.11 Aligned_cols=157 Identities=24% Similarity=0.433 Sum_probs=117.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc--eeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+ .....+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 356899999999999999999999877542 234433 4444455554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..+.+...+ +++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999998887776543 33579999999999986532 222333333 3468899999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988765
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=183.22 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=118.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...++|+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46699999999999999999999988765 34556654432 2333 34799999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhH---HHhhhCCCcccCcceEEE
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAE---ITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~ 156 (181)
|||+++++++..+. .|+..+ .... ++.|+++|+||+|+.+.. ..++ +...++. .+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~ 157 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPEL-RRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-------AAYI 157 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHH-HHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-------SEEE
T ss_pred EEECCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-------ceEE
Confidence 99999999999987 454444 3322 479999999999986531 1111 2222221 2789
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++|++|.+.+.+
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=178.27 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=115.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+...+ +.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 4567899999999999999999999988764 34456554432 333443 6788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030187 89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++..+. .|+..+.... ++.|+++|+||+|+.... ..++... + ....+.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCC
Confidence 9999999999999987 4554443322 479999999999986421 1111111 1 011223
Q ss_pred -EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 -YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 -~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999987753
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=184.03 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=127.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...++.+.+...... ..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4456799999999999999999997766543 345666665544332 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988887776642 4789999999999976432221 111222345679999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+..
T Consensus 164 ~l~~~l~~~l~~ 175 (221)
T 3gj0_A 164 KPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=179.86 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=120.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||+++|.+..+.. ..+|.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 456999999999999999999999987653 3566655442 2222 34889999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHh---HHHhhhCCCcccCcc
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAA---EITDKLGLHSLRQRH 152 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~ 152 (181)
|||+++++++..+. .|+..+... .++.|+++|+||+|+.+. ...+ ++.+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 99999999999984 554444332 257999999999998642 1111 1122221 1
Q ss_pred eEEEEeccc-CCCCHHHHHHHHHHHhhcc
Q 030187 153 WYIQSTCAT-SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~~~~~~Sa~-~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|++|||+ ++.|++++|+.|.+.+.+|
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 479999999 6899999999999988764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=177.55 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=121.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+...+||+++|++|+|||||++++.+..+.. ..+|.+..+ ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 34567899999999999999999999887643 345555443 223343 46899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEe
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQST 158 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~ 158 (181)
++|||+++++++......|...+.... ++.|+++|+||+|+.......+...... ...++..+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998654545444322 4799999999999876421111111000 000111223 78999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|+++++++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=179.73 Aligned_cols=163 Identities=15% Similarity=0.215 Sum_probs=123.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.++.+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 356799999999999999999999987764 344555544332 222 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||+++++++.....|+..+..... .++.|+++|+||+|+.......+....+. ...+++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHH
Confidence 99999999999888887765544221 24789999999999976432222111111 12235799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
++++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=176.10 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=119.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 467999999999999999999999877643 3455544332 2333 34778899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa 160 (181)
|||++++.++......|...+.... ++.|+++|+||+|+.+.....+...... ....+..+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999998843433333322 3789999999999865421111111000 000111233 7999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=180.18 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=102.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.+.++|+++|++|+|||||+++|.++.+.. ..+|....+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887643 3455544332 2333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa 160 (181)
|||+++++++..+...|...+.... ++.|+++|+||+|+.......+...... ....+..+. +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999998743333333222 5789999999999876422111110000 001111233 7999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=186.74 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=93.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccce--eEEEEEEc----CEEEEEEEcCCCCCccccccccccCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGF--NVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~--~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
+..++|+++|++|+|||||+++|.+. .+. ...+|++. ....+... .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 554 44556653 33345444 57899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|++++|||+++++++..+..|+..+..... ..+.|+++|+||+|+.. . ...++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999999988877765433 25799999999999976 2 2222222211 112357999999
Q ss_pred cC-CCCHHHHHHHHHHHhhc
Q 030187 161 TS-GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~-~~~v~~~~~~l~~~l~~ 179 (181)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=179.44 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=113.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cccccCcccee--EEEEEEc--CEEEEEEEcCCCCC-ccccccccccCccE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 87 (181)
+..+||+++|++|+|||||+++|.+.. +....++++.+ ...+... .+.+.+||++|.+. ++.....+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998633 33333333333 2334444 36778999999876 55567788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|+....|+..+......++.|+++|+||+|+... ...++. ..+ +...+++|++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 9999999999999999888776655333357899999999998642 122211 111 111234789999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
|+++|+.+.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=190.21 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=117.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCEEEEEEEcCCCCCccc---cccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~ilv 91 (181)
||+++|+.|+|||||++++.++... ...||++.....+. ..+++++|||+|+++|+. .++.++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 6899999999999999988766443 25678888876653 458999999999999975 358899999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccc----CcceEEEEeccc
Q 030187 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (181)
||++++ +.+...||.+.+.. ...+++|+++++||+|+..... .+++....+...++ +.+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555443321 1236899999999999976432 12343333322232 367899999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+ .+|.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999988764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-30 Score=177.75 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=114.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccceeEEEEE-------EcCEEEEEEEcCCCCCccccccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
.+||+++|++|+|||||++++.+. .+. ...+|++..+.... ...+.+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 34667776654432 24678999999999999999999999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcccCcceEEEEeccc
Q 030187 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++++|||++++ .++..+..|+..+.... ++.|+++|+||+|+.+..... +....+....--....+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 57888888887765432 478999999999987532211 111222211000111248999999
Q ss_pred CCC-CHHHHHHHHHHHhhc
Q 030187 162 SGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~-~v~~~~~~l~~~l~~ 179 (181)
+|. |++++++.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=166.50 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=118.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..++.++|+++|++|+|||||+++|.+..+.. ..+ +.......+...+..+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35678999999999999999999999877643 222 334444556777889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cccCc--ceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRQR--HWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~ 165 (181)
+|+|++++...+.. ..+..... .+.|+++|+||+|+.+. ..+++...+... ..... .++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999875433322 22222222 47899999999999764 223333322211 11222 36899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
+++++++|.+.+.
T Consensus 158 v~~l~~~l~~~~~ 170 (178)
T 2lkc_A 158 LDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998765
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-31 Score=184.60 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=121.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++.++|+++|++|+|||||++++.++.+.. ..+|.+..+. .++...+.+++||+||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 344678999999999999999999999877643 2334332221 233345788899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcccCcce-EEEE
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQS 157 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~ 157 (181)
+++|||+++++++......|...+.... ++.|+++|+||+|+.+..... .+........++..+. ++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999988744444444322 378999999999987542111 1111222222333444 7899
Q ss_pred ecccCCCCHHHHHHHHHHHh
Q 030187 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l 177 (181)
+||++|.|++++|+.|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=161.55 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=108.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc------ccccccc--C
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||+++|.+..+. ...| |.......+...+..+.+|||||++++.. ....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4589999999999999999999986542 2233 33344445666788999999999988753 3355554 8
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 99999999998643 34445555543 37899999999997532 12334444443 35899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|++|.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998774
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=170.65 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=109.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-c--cCccceeEEEEEEcCEEEEEEEcCCCCCc---------cccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 82 (181)
.+.++|+++|++|+|||||+++|.+..+.. . ..|.......+...+..+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 567999999999999999999999887642 1 12444555556667899999999998421 11123446
Q ss_pred cCccEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcc--eEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH--WYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (181)
..+|++++|+|++++.++.. ...++..+... .++.|+++|+||+|+.+...................+ ++++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 78999999999998877642 23444444332 2478999999999987643221110000001111122 689999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|++++|++|.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=178.98 Aligned_cols=162 Identities=21% Similarity=0.232 Sum_probs=121.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--cc--cccCccceeEEEEEE-cCEEEEEEEcCCCCCc-----cccccccccCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|+|||||++++.++. +. ...+|++..+..+.. +++.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35899999999999999999998873 32 456788888877775 5789999999999988 77888899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcccCc---ceEEEEe
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQST 158 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (181)
|++++|||+++++++..+..|...+... ...+++|+++|+||+|+.+.....+ ............. ++++++|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887654332221 1125799999999999876221110 1111111111122 3689999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++ .|+.++|..++..+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 899999999887664
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=163.44 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=109.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
+...+|+++|++|+|||||+++|.+.... ...+ |.+.....+...+..+.+|||||+.++... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987532 2222 334444556677788999999998764321 12357
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+..... ......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998888763 3555444332 225789999999999854211 11122356899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=168.09 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=107.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcCEEEEEEEcCC----------CCCccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGG----------QDKIRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~G----------~~~~~~~~ 78 (181)
.+..+.++|+++|++|+|||||+++|.+..+. ...++.+.+. ..+... ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44557799999999999999999999988632 2333333221 122222 3699999999 56666667
Q ss_pred cccccCc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcccCc
Q 030187 79 RHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 151 (181)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+....... ++.+.++. ..
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----~~ 167 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----DP 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC----CT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc----cC
Confidence 7777766 9999999999887776542 1222222 578999999999998754332 22222332 24
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999998775
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=160.76 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=105.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCc-------cccccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 86 (181)
.+|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+||+||+..+ ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 2222 334455566677889999999998873 344566789999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (181)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. ++.. .+. ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-~~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-PLY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-GGG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-HHH-----hCCCCCeEEEecccCCC
Confidence 999999998764432 2334444433 478999999999987541 1111 111 1223 588999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998876
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=175.34 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=120.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+..++|+++|++|+|||||++++.++.+. ...+|++..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 356699999999999999999999987764 33445544332 23333 366779999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCcce-EEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S 159 (181)
+|||++++.++..+...|...+.... +++|+++|+||+|+.+.....+....... ...+..+. +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999999998744434333322 38999999999998653111111111000 00111233 799999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|++++|+.|.+.+.++
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999988754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=174.75 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=113.9
Q ss_pred ccCcceEEEEcCC---------CCChHHHHhhhhcC---Ccc-cccCcc-ceeE------------------EEEEEcCE
Q 030187 14 AKKEMRILMVGLD---------AAGKTTILYKLKLG---EIV-TTIPTI-GFNV------------------ETVEYKNI 61 (181)
Q Consensus 14 ~~~~~~i~v~G~~---------~~GKssli~~l~~~---~~~-~~~~t~-~~~~------------------~~~~~~~~ 61 (181)
....+||+++|.+ |+|||||+++|.++ .+. ...+|+ +..+ ..++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4466999999999 99999999999983 332 233332 2111 01334568
Q ss_pred EEEEEE-----------------------cCCCCCcccccccccc---------------------CccEEEEEEECCCc
Q 030187 62 SFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR 97 (181)
Q Consensus 62 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~~ 97 (181)
.+++|| ++|++++...+..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 7788888888888887 79999999999998
Q ss_pred --ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 --DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++|+.+..|+..+.......++|+++|+||+|+......++... +.. ...+++++++||++|.|++++|++|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~---~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHT-FAL---SKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHH-HHH---TSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHH-HHH---hcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999998887776542335799999999999865322222211 111 012457999999999999999999998
Q ss_pred Hhh
Q 030187 176 NIA 178 (181)
Q Consensus 176 ~l~ 178 (181)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=166.74 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=109.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE-EEEcCEEEEEEEcCC----------CCCccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNISFTVWDVGG----------QDKIRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~ 80 (181)
.+....++|+++|++|+|||||+++|.+.......++.+.+... +...+..+.+||||| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 44556789999999999999999999988755444444433221 222245688999999 5556666666
Q ss_pred cccCc---cEEEEEEECCCcccHHHH--HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 81 YFQNT---QGLIFVVDSNDRDRVVEA--RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 81 ~~~~~---d~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+++.+ |++++|+|+++..+.... ..|+.. .+.|+++|+||+|+.+........+...........+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 66665 999999999765443322 223322 268999999999997654333322222111111123579
Q ss_pred EEecccCCCCHHHHHHHHHHHhhcc
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+++||++|.|++++|++|.+.+.++
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC--
T ss_pred EEEecCCCCCHHHHHHHHHHHhhcC
Confidence 9999999999999999999988653
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=158.49 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=114.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------cccccccc-
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ- 83 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 83 (181)
..+.++|+++|++|+|||||+++|.+..+. ...+ |.......+...+..+.+|||||++++. ..+..+++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 346789999999999999999999986532 3333 3334455567778999999999998875 33455554
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEe
Q 030187 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~ 148 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPL 148 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEEC
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEE
Confidence 4999999999864 5566666666554 47899999999997542 23344444443 358899
Q ss_pred cccCCCCHHHHHHHHHHHhhcc
Q 030187 159 CATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
||+++.|++++|+++.+.+..+
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC
T ss_pred EecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999887653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-28 Score=167.24 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCC-----------CCCccccccccccC-
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++.+..+. ...++.......+... .+.+||+|| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999988754 2334444433344444 689999999 55666677777776
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHH---------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++......|.. +.......+.|+++|+||+|+.... ..+++.+.++... ...+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777777788776443322 1121122579999999999987643 2334455555421 11134
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcch
Confidence 58899999999999999999998764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=162.06 Aligned_cols=159 Identities=18% Similarity=0.342 Sum_probs=119.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||++++.+..+. ...+|.+... ..+...+ +.+.+||++|+++++..+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999988754 3345555433 3444444 67889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.+.. ...+. ..+. ...++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a-~~l~----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEA-RAFA----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHH-HHHH----HHcCCeEEEEeCCCCCCHH
Confidence 999999988888887776654332 22578999999999986532 22222 1111 1234578899999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=163.20 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=112.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc------cccc--c
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------RHYF--Q 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~--~ 83 (181)
++.++|+++|++|+|||||+|+|.+.... ...| |.......+...+..+.+||+||+..+...+ ..++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987653 3333 4444555666778999999999998877532 4454 5
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++|++++|+|+++.++. ..++.++.. .+.|+++++||+|+... ...+.+.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 89999999999876543 345555544 47999999999997542 23344555554 3689999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-27 Score=165.24 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=109.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc---ccccC--ccceeEEEEE-EcCEEEEEEEcCCCCC----------cc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------IR 75 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~--t~~~~~~~~~-~~~~~~~i~D~~G~~~----------~~ 75 (181)
.+..+.++|+++|++|+|||||+|+|.+... ....+ |.......+. ..+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 4455779999999999999999999998862 22222 3333343343 3457899999999533 34
Q ss_pred ccccccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC--
Q 030187 76 PLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLH-- 146 (181)
Q Consensus 76 ~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~----~~~~~~-- 146 (181)
..+..+++. +|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+.......... +.+...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 444555555 788999999986533 233333344443 578999999999987643322221 111110
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+.+++++||++|.|+++++++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 001245689999999999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=164.83 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=118.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc----CccceeEEEEEEc-CEEEEEEEcCCCCCcc----------ccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYK-NISFTVWDVGGQDKIR----------PLW 78 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~~ 78 (181)
....-.|+++|.+|+|||||+|+|.+..+.... .|.......+... +..+.+|||||+.++. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 345678999999999999999999998764222 2333334455666 8999999999987655 456
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 6778899999999999988888876665555443 478999999999987 4433333322221110 01236889
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+||++|.|++++++.|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988753
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=156.91 Aligned_cols=157 Identities=17% Similarity=0.328 Sum_probs=118.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...+|++..+ ..+...+ +.+++||++|++++...+..++++++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4589999999999999999999988764 4556666544 3344444 567789999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+... ..+....+. ...++.++++||+++.|++++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~----~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999888888877776554322 225789999999999865321 111222221 123457889999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
++.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=163.47 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=111.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc--ccC--ccceeEEEEEEcCEEEEEEEcCCCCC--------cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|.+|+|||||+|+|.+.++.. ..+ |.......+...+..+.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999887642 222 22222333556789999999999876 3445567789
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|++++.+.. ..++.+.+.... ++.|+++|+||+|+..... ..+..+.+ . ...+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence 999999999998764443 455555554422 4789999999999875433 22333333 1 123688999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|++++++.|.+.+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887643
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=162.93 Aligned_cols=135 Identities=24% Similarity=0.422 Sum_probs=109.5
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.||+|+....+..+++++++||++|+++++..|..++++++++|+|+|++ +.+++.+...++..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 46788888889999999999999999999999999999999999999654 67889999999999988777
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHHhh-----hCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNA------------------MNAAEITDK-----LGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.|+++++||+|+... ...++..+- ......+..++.+++|||+++.||+++|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 788999999999997531 222222221 112223346678899999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=164.15 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=109.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc----------ccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~ 82 (181)
+.++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+|||||+.++... ...++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5689999999999999999999987643 2333 444445556667789999999999877632 22222
Q ss_pred --cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEE
Q 030187 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+++|++++|+|+++.++...+..++.+ .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 689999999999875544433333332 278999999999986432 3344444444 3689
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++++.|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=161.17 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc----------cccccc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~-- 82 (181)
.+|+++|++|+|||||+|+|.+.... ...| |.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999987642 3333 44455566777888999999999987764 345566
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++|++++|+|+++.++...+.. .+.. .+.|+++|+||+|+.... ....+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 88999999999987544433322 2222 378999999999976432 3334444444 368999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
||++|.|++++++.|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=167.38 Aligned_cols=133 Identities=26% Similarity=0.443 Sum_probs=107.4
Q ss_pred CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCC
Q 030187 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|+++....+..+++.+++||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 47777777888889999999999999999999999999999999999998 56799999999999887666
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-cCcceEEEEecccCCCCHHHHHHHH
Q 030187 117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
.+.|+++++||+|+.. ....++...... +... ...++.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 122233222111 1111 1356889999999999999999999
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=161.82 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=106.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-cccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------cccccccc--C
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||+|+|.+.. +....| |.......+.. +..+.+|||||+.++. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 35799999999999999999999865 333333 33333333333 6789999999998876 34455555 6
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++.++ ...|+.++.. .+.|+++++||+|+... ...+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 999999999986543 3444444443 47899999999997532 23344444444 36899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|+++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=157.38 Aligned_cols=150 Identities=22% Similarity=0.249 Sum_probs=113.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc------cccccc--cC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 84 (181)
+.++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+||+||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999987653 3333 44444556777888999999999988776 445555 68
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++. .....++.++... ...|+++++||+|+... .....+.+.++. +++++||
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEe
Confidence 9999999999764 3444555555543 23899999999996431 234555555553 5889999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++++.+.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=163.31 Aligned_cols=132 Identities=26% Similarity=0.413 Sum_probs=98.6
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|+|+++ .+++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 5666666778889999999999999999999999999999999999998 789999999999998876667
Q ss_pred CCeEEEEEeCCCCCC-----------------C-CCHhHHHhhh-----CCCccc-CcceEEEEecccCCCCHHHHHHHH
Q 030187 118 DAVLLVFANKQDLPN-----------------A-MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 118 ~~piivv~nK~D~~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
+.|+++++||+|+.. . ...++..... .+.... ..++.+++|||+++.||+++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999852 1 2333333211 111111 346789999999999999999999
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=172.32 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=111.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCC----------Ccccccc-c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWR-H 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~-~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+...+..+++|||||+. .|..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 2222 3333344566778889999999973 3333332 4
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++.+|++++|+|++++.+++.. .++..... .++|+++|+||+|+.+... .+++.+.+........+.+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77889999999999998887775 34433332 5799999999999876533 22333222211111234579999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|.|++++|+.+.+.+.
T Consensus 329 SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999988765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=178.49 Aligned_cols=156 Identities=20% Similarity=0.308 Sum_probs=107.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE------------EcCEEEEEEEcCCCCCccccccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
....+||+++|.+|+|||||++++.+..+. ...+|++.++.... ...+.+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 346699999999999999999999988764 44567777665431 12589999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|+|+++.+.. ..|+..+.... ++.|+++|+||+|+.... ..++...... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 99999999999999765443 44444443321 368999999999997643 2233333222 223468999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|++++++.|.+.+.+
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CC-----CTTHHHHHHHHHTC
T ss_pred ecCcccCHHHHHHHHHHHHhc
Confidence 999999999999999987754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=167.22 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=97.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc--------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 82 (181)
++.++|+++|++|+|||||+|+|.+... ....+ |.+.....+...+..+.+|||||..++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 23232 4444455677788999999999987765433 4478
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcccCcceEEEEecc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++|++++|+|++++.+++....+ ..++... .+.|+++|+||+|+........ +.+. . ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 899999999999988877532221 1222211 2689999999999976543321 2111 0 135889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=162.93 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=95.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC----
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN---- 84 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 84 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..++....+ ....+.+||+||+++++..+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 35677999999999999999999999887543 233332222 56789999999999999988888887
Q ss_pred ccEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC
Q 030187 85 TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 85 ~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~ 135 (181)
+|++++|+|++ +++++.....|+.+++... ...++|+++|+||+|+.....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 8899999999988877643 225799999999999987654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=161.79 Aligned_cols=134 Identities=26% Similarity=0.364 Sum_probs=107.5
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.+|+|+....+..+++.+++||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45778888888889999999999999999999999999999999999998 67899999999999988877
Q ss_pred CCCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCcccC-----------cceEEE
Q 030187 116 LRDAVLLVFANKQDLPNA-----------------MNAAEI----TDKL-------GLHSLRQ-----------RHWYIQ 156 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~ 156 (181)
..+.|+++++||+|+... ...++. ...+ ....... +.+.++
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 788999999999998531 112222 1222 1111111 468899
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+|||++..||+++|+.+.+.|.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=166.23 Aligned_cols=163 Identities=16% Similarity=0.086 Sum_probs=113.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccccc----Cccc--------------e-----eEEEEEEcCEEEEEEEcC
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG--------------F-----NVETVEYKNISFTVWDVG 69 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~ 69 (181)
..+..++|+++|++++|||||+++|.+....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3567799999999999999999999874321100 0000 0 000001122689999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCc
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHS 147 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~--~~~ 147 (181)
|+++|...+..++..+|++++|+|+++..++.....++...... ...|+++++||+|+.+.....+..+.+. ...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876666666665543322 2358999999999986532222222111 111
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
....+++++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1223567999999999999999999998764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=158.07 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=115.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCccc---------cccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~ 82 (181)
...++|+++|++|+|||||+|+|.+.... . ...|.......+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987642 1 23355555566666788999999999865321 112344
Q ss_pred cCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++...... ..+.+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998776 6777777777665532 2789999999999876432222222111 12346889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|+|+++++++|.+.+.
T Consensus 318 ~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTBTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998775
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=165.68 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=113.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCC-Cccc--------cccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~ 82 (181)
+.++|+++|.||+|||||+|+|.+.+. ....+ |.+.....+...+..+.+|||||.. ++.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 23223 5555556677788999999999987 6543 234567
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++... .+ +.+ .+.|+++|+||+|+......+++.+... .+.+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999888776532 22 332 3689999999999976544444443322 123588999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998754
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=162.81 Aligned_cols=121 Identities=18% Similarity=0.343 Sum_probs=92.4
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
..+.+++|||+|+++++..|..++++++++|+|||++ +.+++.+...|+..+......++.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 788999999999998887656789999999999
Q ss_pred CCCCC----CC-------------------HhHHHhhhCC-----------CcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 129 DLPNA----MN-------------------AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 129 D~~~~----~~-------------------~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
|+... .. .++....... .......+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97431 00 1111110000 00012346678999999999999999999
Q ss_pred HHhhc
Q 030187 175 NNIAN 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=166.99 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=108.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCE-EEEEEEcCCCCCcccc-------ccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~ 80 (181)
+....++|+++|++|+|||||+|+|.+..+. ....|.......+...+. .+.+|||||+.++... +..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4456789999999999999999999987753 222355555566666554 8999999999887655 344
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++.. .....|+..+.. .++|+++|+||+|+...... +..+.+.. ..+++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 78899999999998322 223334444333 37899999999999876544 23333321 23457899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++++.|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=164.06 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=102.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCc---------cccccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~ 84 (181)
.+|+++|.||+|||||+|+|.+.+.. ...| |.+..+..+.+.+..+++|||||.+.. ...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987643 2222 444456667778889999999997652 3345678899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (181)
+|++++|+|+.++.+.. ..++.++++. .++|+++|+||+|+.... ..+....+.. .++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 99999999997654433 2333343332 368999999999975320 1111011111 112 3679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.|++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999988775
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=166.68 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=100.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccce----eEEEEEEcCEEEEEEEcCCCC--------CccccccccccC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 84 (181)
..+|+++|.+|+|||||+|+|.+.......++.+. .+..+.+.+..+.+|||||++ ++...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 47899999999999999999998765433333333 333444466789999999986 456667788899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (181)
+|++++|+|+.++.+.. ..++.+.++. .++|+++|+||+|+..... +..+ .. ..+. .++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~~~-----~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYD-----FY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCS-----SG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hHHH-----HH-HcCCCCeEEEeCcCC
Confidence 99999999998765544 3456666654 5789999999999865311 0000 01 1111 4779999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTHHHHHHHHHHTGG
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999998875
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-24 Score=159.58 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=114.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCC----CCcccccccccc---Ccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~d 86 (181)
.+|+++|.+|+|||||+++|...... . ...|...+...+...+ ..+.+||+||. .++..+...+++ +++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47999999999999999999876532 1 1234555555566654 78999999994 344445454544 599
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++++|+|+++ +++++....|+.++.... ....+|+++|+||+|+.... ..+++.+.+... .+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence 9999999998 788888887777765542 23579999999999987532 122333333211 458899999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
++.|+++++++|.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=168.39 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=110.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCC----------CCCcccccc-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~- 79 (181)
...++|+++|.+|+|||||+|+|.+.... ...+ |.......+...+..+++||||| ++++.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999976532 2222 33333455667788999999999 566665544
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+ ....++...+.. .++|+++|+||+|+.+... .++..+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47789999999999976533 334444444443 5799999999999876432 2333222221111112357999
Q ss_pred ecccCCCCHHHHHHHHHHHhh
Q 030187 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||++|.|++++|+.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=161.25 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=90.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc------------------CCcc-------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL------------------GEIV-------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~------------------~~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++|+|||||+++|.. .... ....|+......+.+.+..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3567999999999999999999961 1111 12335666667788889999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++++|+|+++..+.+....| ..... .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcccc
Confidence 9999999999999999999999999987666655443 33333 478999999999997643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=162.98 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=100.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++|+++|++|+|||||+|+|.+... ....+ |.......+...+..+.+|||||..++... ...++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999987643 22222 333334456678899999999998665433 23467
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|++++|+|++++.+... ..++.. +. ..|+++|+||+|+....... ..... ....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~-l~-----~~piivV~NK~Dl~~~~~~~------~~~~~-~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQ-VK-----HRPLILVMNKIDLVEKQLIT------SLEYP-ENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHH-HT-----TSCEEEEEECTTSSCGGGST------TCCCC-TTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHh-cc-----CCcEEEEEECCCCCcchhhH------HHHHh-ccCCcEEEEECCC
Confidence 88999999999998766554 233333 32 36999999999987642221 01101 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987753
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=159.81 Aligned_cols=132 Identities=26% Similarity=0.369 Sum_probs=102.8
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|||+++ .++|.+...|+..+......+
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5556666677788999999999999999999999999999999999998 899999999999998876667
Q ss_pred CCeEEEEEeCCCCCCC-----C-C-------------------------HhHHHhhh-----CCC----cccCcceEEEE
Q 030187 118 DAVLLVFANKQDLPNA-----M-N-------------------------AAEITDKL-----GLH----SLRQRHWYIQS 157 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----~-~-------------------------~~~~~~~~-----~~~----~~~~~~~~~~~ 157 (181)
+.|+++++||+|+... . . ..+....+ ... .....++.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997421 0 0 00111111 000 00113567889
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
|||+++.||+++|..+.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-24 Score=168.20 Aligned_cols=157 Identities=17% Similarity=0.105 Sum_probs=112.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccC--ccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+..+|+++|++++|||||+++|.+..+.. ..+ |..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 56899999999999999999998765432 122 33333333333 345799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-cccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|+++....+.... +..... .++|+++++||+|+.+.. ............ ......++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~-l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVES-IQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHH-HHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHH-HHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99987655554433 323222 478999999999987532 112222222211 1112357899999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+++.|...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998765
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=156.36 Aligned_cols=161 Identities=17% Similarity=0.091 Sum_probs=103.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc---c-c--ccCccceeEEEEEE---------------c--------CEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEY---------------K--------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~---------------~--------~~~~ 63 (181)
.++..++|+++|++++|||||+++|.+... . + ...|++..+..... . ...+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 346679999999999999999999985432 1 1 12255554433222 1 1689
Q ss_pred EEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030187 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~ 139 (181)
.+||+||+++|...+...+..+|++++|+|+++..+.......+..+ ... ...|+++++||+|+.+... .+++
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643112222222211 111 2357999999999976542 2233
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 161 KEFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332221 1123567999999999999999999998664
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-24 Score=166.43 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=102.9
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCcccee----EEEEEEcCEEEEEEEcCC--------CCCccc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG--------QDKIRP 76 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~ 76 (181)
-.....+...+|+++|.+|+|||||+|+|.+.......++.+.+ +..+...+..+.+||||| ++++..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHH
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH
Confidence 33455567789999999999999999999987754333333333 333444567899999999 556667
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEE
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
....+++.+|++++|+|+.+ ++.....++.+.+.. .++|+++|+||+|+..... ...+.+.+ ..+ ..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~l----g~~-~~~ 162 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYSL----GFG-EPY 162 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----SSS-SEE
T ss_pred HHHhhHhhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHHc----CCC-ceE
Confidence 77888899999999999854 344555667777765 5789999999999864321 11111111 111 245
Q ss_pred EecccCCCCHHHHHHHHHHHhh
Q 030187 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++||++|.|+.++++.+.+.+.
T Consensus 163 ~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 163 PISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp ECCTTTCTTHHHHHHHHHTTGG
T ss_pred EeecccccchHHHHHHHHhhcc
Confidence 8999999999999999988764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=146.15 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=96.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC----c
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~ 85 (181)
..+.++|+++|++|+|||||++++.+..+.. ..++... ......+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4577999999999999999999999887543 2222222 1256789999999999998888887776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|++ +++++.....|+..++... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8889999988888876542 22579999999999998776665555443
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=148.29 Aligned_cols=153 Identities=20% Similarity=0.109 Sum_probs=108.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc--cC--ccceeEEEEEEcCEEEEEEEcCCCC---------Cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 82 (181)
+..+|+++|++|+|||||+|+|.+...... .+ |.......+...+..+.+|||||.. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 445899999999999999999998875321 12 2222333456678899999999987 3445556778
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcce-EEEEecc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (181)
+.+|++++|+|+++ +.....++.+.+.. .+.|+++++||+|+.. .....+....+.. ..++ .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence 99999999999975 33444455555543 4789999999999876 2222222222211 1122 6889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987664
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=162.71 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=109.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC----cc------cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~----~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
++.++|+++|++++|||||+++|.+.. .. ....|++..+..+...+..+.+|||||+++|...+..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 457899999999999999999998766 11 12235566666677788999999999999999888889999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC--Ccc-cCcceEEEEeccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~Sa~ 161 (181)
+|++++|+|+++...-+.. ..+. .+.. .++|+++++||+|+.+....+++.+++.. ... ...+.+++++||+
T Consensus 97 aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTG-EHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCccHHHH-HHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 9999999999863221211 1121 2222 36788999999999864222222221110 000 1124679999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030187 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~ 178 (181)
+|.|++++++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999988653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=161.72 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=106.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 58 (181)
..+..++|+++|++++|||||+++|.... +. ....|++.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34567999999999999999999995431 00 122356666667778
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCccc---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 131 (181)
.+..+.+|||||+++|...+..+++.+|++++|+|+++... |+ .....+... .. .+.| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCc
Confidence 88999999999999999999999999999999999986532 11 112222211 11 3455 99999999986
Q ss_pred CCCC----HhHHHhh----hCCCcccC-cceEEEEecccCCCCHHHHHH
Q 030187 132 NAMN----AAEITDK----LGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 132 ~~~~----~~~~~~~----~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
.... .+++..+ +....+.. .+++++++||++|.|++++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 4321 1122221 11111111 256899999999999999554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=157.34 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=105.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------------R 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------------~ 79 (181)
..++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+|||+|..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999987642 2222 3333344566777889999999975432211 2
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+.+. .++...+.. .+.|+++++||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 45678999999999987666554 233333332 5789999999999875422 2333222211111122346889
Q ss_pred ecccCCCCHHHHHHHHHHHhh
Q 030187 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||++|.|++++|+.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=154.70 Aligned_cols=146 Identities=8% Similarity=0.036 Sum_probs=110.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+|+++|++++|||||+++|. ....|++..+..+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 44567777777787788899999999999998888888899999999999 5 33
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcccCcceEEEE--ecccC---CCCHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v~ 167 (181)
.+.....++..... .++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 44444554443332 35666 88898 9999 432222 222222211 123468999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988754
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=160.31 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=107.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccccc-----CccceeEEEEE----------------EcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 73 (181)
.+.++|+++|++++|||||+++|.+..+.... ++++..+.... .....+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876543222 23343332211 1112699999999999
Q ss_pred ccccccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+..+++.+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999999999999999999987 44443332 12 21 4789999999999864211 0
Q ss_pred h-----------HHHhhhCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 137 A-----------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+ ++...+....+ ....++++++||++|.|+++++++|...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11111110001 024568999999999999999999987653
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=145.82 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=103.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC-cc-ccc---CccceeEEEEEEcCEEEEEEEcCCCCCccccc---------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------- 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~-~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 78 (181)
+....++|+++|++|+|||||+|+|.+.. +. ... .|.......+...+..+.+|||||+..+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 44567999999999999999999999876 22 122 34444555677788999999999987654322
Q ss_pred --cccccCccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhh
Q 030187 79 --RHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDK 142 (181)
Q Consensus 79 --~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~D~~~~~~~~~------------~~~~ 142 (181)
..+++.+|++++|+|+++.... .....++.+..... ...|.++++| |+|+... .... +...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2367889999999999853222 22223344433211 1345555555 9999754 2222 2222
Q ss_pred hCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...... .+..+++||++|.|++++|+.|.+.+..
T Consensus 175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 221100 0111689999999999999999988764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-23 Score=157.87 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=106.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC---ccc---------------------------------ccCccc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE---IVT---------------------------------TIPTIG 50 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~~---------------------------------~~~t~~ 50 (181)
.++.+...+..++|+++|++++|||||+++|.+.. +.. ...|+.
T Consensus 14 ~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 14 AYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp --CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred HHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Confidence 33444445567999999999999999999997542 000 122444
Q ss_pred eeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 51 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
..+..+...+..+.+|||||+++|...+..+++.+|++++|+|+++....+. ..++.. +... ...|+++++||+|+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~-~~~~--~~~~iIvviNK~Dl 169 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYI-ASLL--GIKHIVVAINKMDL 169 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHH-HHHT--TCCEEEEEEECTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHHc--CCCeEEEEEEcCcC
Confidence 4555667778899999999999999888888999999999999987643332 233322 2221 12479999999999
Q ss_pred CCCCC--HhHHHhhh----CCCcccCcceEEEEecccCCCCHHHH
Q 030187 131 PNAMN--AAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 131 ~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
.+... .+++.... .........++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 76321 11121111 11111123478999999999999874
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=159.36 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=107.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--cc---------c-------ccCccceeEEEEEEc-----CEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------T-------TIPTIGFNVETVEYK-----NISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~ 72 (181)
+..+|+++|++++|||||+++|.... +. . ...|+......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45699999999999999999997521 11 0 111333333344443 3789999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+...... +++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999999887777776665443 2 37899999999999865421 23333333321
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..++++||++|.|++++++.+.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 137899999999999999999988754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-23 Score=161.96 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=101.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|... .+. ....|++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56789999999999999999999753 111 12245556666677788
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHH---HHHhcCCCCCC-CeEEEEEeCCCCCCCCC-
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDELRD-AVLLVFANKQDLPNAMN- 135 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~~~~-~piivv~nK~D~~~~~~- 135 (181)
..+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|. .+.+......+ .|+++++||+|+.+...
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 999999999999999999999999999999999987 6666543211 11111000123 46899999999976321
Q ss_pred -------HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 136 -------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
.+++...+....+....++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1122222211111222468999999999999754
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-23 Score=164.38 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=104.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.+.. +. ....|+......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567999999999999999999996541 00 1133566666777788
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+..+.+|||||+++|...+..+++.+|++++|+|+++..++.. .......++... ...|+++++||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999987654322 112222222221 235699999999997632
Q ss_pred --CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHH
Q 030187 135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
..+++...+ ........+++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 112222111 1111223367899999999999975
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=156.23 Aligned_cols=161 Identities=18% Similarity=0.118 Sum_probs=109.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc---c-c--ccCccceeEEEEEEc-----------------------CEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEYK-----------------------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~-----------------------~~~~ 63 (181)
..+..++|+++|++++|||||+++|.+... . + ...|+...+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345668999999999999999999985431 1 1 222665554433320 1689
Q ss_pred EEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030187 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~ 139 (181)
.+|||||+++|...+...+..+|++++|+|+++..+.......+..+ ... ...|+++++||+|+.+... .+++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643111122222111 111 2357999999999976432 1222
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 163 ~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222221 1123568999999999999999999998664
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-22 Score=157.37 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=110.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc---------c-------ccCccceeEEEEEEc-----CEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV---------T-------TIPTIGFNVETVEYK-----NISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~ 71 (181)
++..+|+++|++++|||||+++|... .+. + ...|+......+.+. .+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34579999999999999999999752 111 0 111333222334332 378999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+...... +++.+.++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~-- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD-- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC--
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCC--
Confidence 999998888999999999999999888887776665443 2 47899999999999865421 1222222221
Q ss_pred cCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|++++++.|.+.+..
T Consensus 157 ---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1137899999999999999999988753
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-23 Score=157.25 Aligned_cols=158 Identities=18% Similarity=0.089 Sum_probs=110.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-------cc------------cccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
..++|+++|++++|||||+++|.+.. +. ....|++.....+...+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999997631 10 122355555555666778999999999999988
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCcccC
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 150 (181)
.+..+++.+|++++|+|+++....+.. ..+... .. .++| +++++||+|+.+... . +++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888889999999999999876544333 333222 22 3677 789999999875211 1 11222221111222
Q ss_pred cceEEEEecccCCCC----------HHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCATSGEG----------LYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~----------v~~~~~~l~~~l~ 178 (181)
..++++++||++|.| ++++++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346799999999764 8999999988664
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=155.16 Aligned_cols=160 Identities=20% Similarity=0.164 Sum_probs=112.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--------Ccc------------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--------EIV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+..++|+++|++++|||||+++|.+. .+. ....|+......+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356689999999999999999999862 111 122355555556666778999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCc
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHS 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 147 (181)
|...+..+++.+|++++|+|+++....+ ...++..... .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888999999999999998765433 3444443332 3677 899999999975211 11 1212111111
Q ss_pred ccCcceEEEEecccCCCC------------------HHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------v~~~~~~l~~~l~ 178 (181)
+.....+++++||++|.| ++++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112245799999999987 7888888877654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=149.95 Aligned_cols=154 Identities=18% Similarity=0.120 Sum_probs=104.7
Q ss_pred cce-EEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCCC---------cccccccccc
Q 030187 17 EMR-ILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (181)
Q Consensus 17 ~~~-i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 83 (181)
.++ |+++|++|+|||||+|+|.+.... ...+|.+.....+...+..+.+|||+|..+ +...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 999999999999999999987642 223466666667777788999999999632 22222 3468
Q ss_pred CccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---H----HhhhCCCcccCcceE
Q 030187 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---I----TDKLGLHSLRQRHWY 154 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~---~----~~~~~~~~~~~~~~~ 154 (181)
.+|++++|+|++++. ..... ..+.+.+......+.|+++|+||+|+.+.. ... . ...+. ..+.+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~ 329 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFD 329 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEE
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCc
Confidence 899999999998775 33333 333344443333578999999999987643 211 1 12221 12346
Q ss_pred EEEecccCCCCHHHHHHHHHHHhh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++++||+++.|++++++.|.+.+.
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHhc
Confidence 789999999999999999988765
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=161.66 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=108.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+..+|+++|++++|||||+++|.+..+... ..|.....+.+...+..+.+|||||++.|...+...++.+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987543321 1233333334445567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--ccc--CcceEEEEecccCCCCHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLR--QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+++....+.. ..+..... .+.|+++++||+|+..... +.+...+... ..+ ...++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHH-HHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999863221211 12222212 4789999999999975321 1121111110 011 123689999999999999
Q ss_pred HHHHHHHHH
Q 030187 168 EGLDWLSNN 176 (181)
Q Consensus 168 ~~~~~l~~~ 176 (181)
++++.|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-23 Score=164.62 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=104.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc----------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|.+.... ....|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 46799999999999999999999865210 12335666666788888
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ..........+... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999997531 11 01111111222221 235699999999997631
Q ss_pred -CHhHHHhh----hCCCcccCcceEEEEecccCCCCHHHH
Q 030187 135 -NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 -~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
..+++... +........+++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11111111 111112223568999999999999865
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-23 Score=159.79 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=91.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhc--CCcc--------------------------------cccCccceeEEEE
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTIPTIGFNVETV 56 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~ 56 (181)
....+..++|+++|++++|||||+++|.. +.+. ....|++..+..+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 34456779999999999999999999964 1110 1234555555667
Q ss_pred EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHHH---HHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVE---ARDELHRMLNEDELRDAV-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~---~~~~~~~~~~~~~~~~~p-iivv~nK~D 129 (181)
...+..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+. ....+... .. .++| +++++||+|
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~D 192 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMD 192 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECcc
Confidence 777899999999999999999999999999999999998652 2221 11111111 11 3566 999999999
Q ss_pred CCCCC-CH---h----HHHhhhCCC-ccc-CcceEEEEecccCCCCHHHHH
Q 030187 130 LPNAM-NA---A----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 130 ~~~~~-~~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+.... .. + ++...+... .+. ..+++++++||++|.|+++++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96422 11 1 122111110 111 125789999999999998754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-23 Score=166.70 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=89.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--c-------------------------c-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------V-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~-------------------------~-------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.... + . ....|+......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4566899999999999999999995321 0 0 1122445555556667
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH--HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
+..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ..........+.. .++| +++|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 788999999999999999999999999999999997532 11 1111111111222 2454 9999999998753
Q ss_pred C--CH----hHHHhhh-CCCcccCcceEEEEecccCCCCHH--------------HHHHHHHHHh
Q 030187 134 M--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY--------------EGLDWLSNNI 177 (181)
Q Consensus 134 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~~~~~l~~~l 177 (181)
. .. .++...+ ....+...+++++++||++|.|+. ++++.|.+.+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 11 2233333 222333446789999999999998 6777776543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-22 Score=145.77 Aligned_cols=158 Identities=15% Similarity=0.235 Sum_probs=89.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cc-------cCccceeEEEEEE----cCEEEEEEEcCCCCCc-------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-------IPTIGFNVETVEY----KNISFTVWDVGGQDKI------- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~------- 74 (181)
...++|+++|.+|+|||||+|+|.+.... .. .+|++........ ..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45689999999999999999998766532 11 4566666555443 2369999999997432
Q ss_pred cccc-------cccc-------------cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 RPLW-------RHYF-------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
..+. ..++ .++|+++++++.+.. ++......+...+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2221 2222 237899999987642 233334444444443 78999999999987543
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
........+. ..+...+++++++||+++.|+++++++|.+.+.
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3222211111 111223456788999999999999999987653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-22 Score=152.11 Aligned_cols=161 Identities=15% Similarity=0.206 Sum_probs=86.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc-cc-c--------cCccceeEEEEE--EcC--EEEEEEEcCCC-------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-T--------IPTIGFNVETVE--YKN--ISFTVWDVGGQ------- 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~-~--------~~t~~~~~~~~~--~~~--~~~~i~D~~G~------- 71 (181)
.....++|+++|++|+|||||+++|.+... .. . .+|++.....+. ..+ +.+++|||||.
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 345568999999999999999999876432 11 1 145444443322 223 57999999998
Q ss_pred CCcccccc-------ccccCcc-------------EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWR-------HYFQNTQ-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~-------~~~~~~d-------------~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+.+..++. .+++.++ +++++++.+ ..++......+...+. .++|+++|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 66776665 5555443 344444432 4566666655555443 578999999999987
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
......... ......+...+++++++||+++.| ++.|..+.+.+.+.
T Consensus 188 ~~~ev~~~k-~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 188 TLKERERLK-KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp CHHHHHHHH-HHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CHHHHHHHH-HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 642222111 111122334466889999999999 88888877776543
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=148.14 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=84.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
++..+|+++|++|+|||||+++|.... +. ....|+......+.+.+..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 456899999999999999999998531 10 01123333445677788999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++|+|+|+++....+. ...+. .+.. .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~-~~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLME-VTRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHH-HHTT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHH-HHHH---cCCCEEEEEcCcCCcccc
Confidence 999999888889999999999999987543222 22222 2222 478999999999997654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=141.17 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=99.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------cce--------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF-------------- 51 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t----------------------~~~-------------- 51 (181)
...++|+|+|.+|+|||||+|+|.+..+. +..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987753 11121 000
Q ss_pred -----------eEEEEEEc-CEEEEEEEcCCCC-------------CccccccccccCccEEE-EEEECCCcccHHHHHH
Q 030187 52 -----------NVETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 52 -----------~~~~~~~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~ 105 (181)
....+... ...+.+|||||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011111 3689999999964 23445667888888777 6899976544333222
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++ ..+.. .+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.|.+
T Consensus 184 ~~-~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IA-KEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HH-HHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HH-HHhCC---CCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 33 33332 4789999999999876432 2222211 11111112247889999999999999998865
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=150.59 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=103.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|.+. .+. ....|++..+..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999753 110 12346666667788888
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~ 133 (181)
..+.+|||||+++|...+..+++.+|++++|+|+++.. +|+ .....+.. +.. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997542 121 12222222 221 345 49999999999742
Q ss_pred C--CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHHH
Q 030187 134 M--NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 134 ~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
. ..+++..+. ....+...+++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 111111111 11111122467999999999998743
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=140.79 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=97.2
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCC-----------Cc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQD-----------KI 74 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~ 74 (181)
.......++|+++|++|+|||||+|+|.+...... ..|.......+...+..+.+|||||.. .+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 34455779999999999999999999998775322 234445555677788999999999954 23
Q ss_pred cccccccccCccEEEEEEECCCcccHH-HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccC
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQ 150 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~ 150 (181)
...+...++.+|++++|+|+++..... ....++....... ...|+++|+||+|+......++...... ....+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 344455667889999999987544321 1222232222211 2358999999999865432221110000 000111
Q ss_pred cceEEEEeccc-----CCCCHHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCAT-----SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~-----~~~~v~~~~~~l~~~l~ 178 (181)
.+..++.++.. +..++.++++.+.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 11124444444 34789999998877764
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-21 Score=159.23 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=108.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-------cc------------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+.. +. ....|+......++..+..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999997631 00 11123333344566677899999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-----AEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 149 (181)
..+..+++.+|++|+|+|+++....+ ...++..+.. .++| +++++||+|+.+.... +++.+.+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888999999999999998754332 2333332222 3577 8999999999753211 1122222111122
Q ss_pred CcceEEEEecccCC--------CCHHHHHHHHHHHhh
Q 030187 150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~--------~~v~~~~~~l~~~l~ 178 (181)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 578999999887654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=149.17 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=88.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Cc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
++..+|+++|++|+|||||+++|... .+ . ....|+......+.+.+..+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45689999999999999999999731 11 0 223456666667778889999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|...+..+++.+|++++|+|+++..+.+....|. .... .++|+++++||+|+....
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccCC
Confidence 9999999999999999999999887777665543 3333 478999999999997653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=133.13 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=82.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc-------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------- 83 (181)
++.++|+++|++|+|||||+|+|.+...... ..|.......+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3679999999999999999999998774221 12445555667778899999999999887766544443
Q ss_pred --CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCC
Q 030187 84 --NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPN 132 (181)
Q Consensus 84 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~ 132 (181)
++|++++|++++... +......+.+.+...... ..|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987544 433332222222221112 248999999999853
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=144.80 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=85.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc---------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
..+..+|+++|++|+|||||+++|.+.... ....++......+...++.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 345679999999999999999999732110 11224445556677788999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+|...+..+++.+|++++|+|+++.-..+.. .++..... .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999899999999999999998765443332 44444433 478999999999987
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=144.60 Aligned_cols=116 Identities=20% Similarity=0.144 Sum_probs=88.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc--CCcc-------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
.++..+|+++|++|+|||||+++|.. +.+. ....|+......+.+.+..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45668999999999999999999984 2211 11234445556677788999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+|...+..+++.+|++++|+|+++..+.+....| ..+.. .+.|+++++||+|+....
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCccccc
Confidence 9999999999999999999999987776665443 33333 478999999999997653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=127.21 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=96.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeE--EEEEEcCEEEEEEEcCCCCCc----------cccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI----------RPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~----------~~~~ 78 (181)
..-....+|+++|++|+|||||++++.+..+ ....++.+... ..+...+ .+.+||+||.... +...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3445678999999999999999999998763 22233333222 1222233 5789999997532 2222
Q ss_pred cccc---cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCc
Q 030187 79 RHYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 151 (181)
..++ +.++++++++|++.+.+.... .+...+.. .+.|+++++||+|..+.... ..+....... ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CC
Confidence 2333 578999999999876655321 11122221 46889999999998653211 1122211111 12
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.++++||+++.|++++++.|.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 357889999999999999999988654
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=141.88 Aligned_cols=115 Identities=16% Similarity=0.036 Sum_probs=86.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Ccc-------------------cccCccceeEEEEEEcC-------EEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------TTIPTIGFNVETVEYKN-------ISFTV 65 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i 65 (181)
.++..+|+++|++|+|||||+++|... .+. ....|+......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 356689999999999999999999642 111 11234444445555555 89999
Q ss_pred EEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|||||+.+|...+..+++.+|++|+|+|+++....+.... |..... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999987655544433 333322 47899999999998764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=132.48 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred CEEEEEEEcCCCCC-------------ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 60 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 60 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
...+.+|||||..+ +......+++++|++++|+|+++.+........+...+.. .+.|+++|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVIT 206 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEc
Confidence 36799999999754 3445667888999999999975332111111122333332 4789999999
Q ss_pred CCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC---CCCHHHHHHHHHHHhh
Q 030187 127 KQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~~~l~ 178 (181)
|+|+..... ..+..+.. ........+++..+|+.+ +.|+.++++.+.+.+.
T Consensus 207 K~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 999876543 12222210 011111123444556666 8999999998877654
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=147.45 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=105.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc-eeE--------EEE--------------------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG-FNV--------ETV-------------------------- 56 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~-~~~--------~~~-------------------------- 56 (181)
.++.++|+|+|++|+|||||+|.|.+.... ...|+.. +.. .+.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 457899999999999999999999987642 2222221 000 001
Q ss_pred --------------------EEcC----EEEEEEEcCCCCC---ccccccccccCccEEEEEEECCCcccHHHHHHHHHH
Q 030187 57 --------------------EYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 109 (181)
Q Consensus 57 --------------------~~~~----~~~~i~D~~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 109 (181)
.... ..+.+|||||... ....+..+++++|++++|+|++++.+......+. +
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 1110 3589999999544 3455667889999999999998887776654443 3
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHh----hhCCC----cccCcceEEEEeccc--------
Q 030187 110 MLNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITD----KLGLH----SLRQRHWYIQSTCAT-------- 161 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~-----~~~~-------~~~----~~~~~----~~~~~~~~~~~~Sa~-------- 161 (181)
.+.. .+.|+++|+||+|+.... ..++ +.. .+... .......+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 3332 367899999999986432 1001 111 11100 000123358899999
Q ss_pred ------CCCCHHHHHHHHHHHhh
Q 030187 162 ------SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ------~~~~v~~~~~~l~~~l~ 178 (181)
++.|++++++.|.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=126.05 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=79.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc----CccceeEEEEEEcCEEEEEEEcCCCCCccccccc---------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH---------YF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------~~ 82 (181)
..++|+++|++|+|||||+|+|.+..+.... .|.......+...+..+.+|||||..++...... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 5799999999999999999999987753221 2333344556677899999999998776543221 13
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCCCCCC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNA 133 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~ 133 (181)
+.+|++++|+|++.. ++......+...+......+ .|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999998643 34433322323332211122 689999999998654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=131.68 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=106.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCCCCc----ccccc---ccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWR---HYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~~---~~~~~~d 86 (181)
-.|+++|++|+|||||++.+.+.... . ...|...+...+...+ ..+.+||+||..+. ..+.. .....++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999876421 1 1123334444455554 78999999997532 22222 2245799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
.++.++|++ .+++..+..+..+..... .....|.++++||+|.......+.+.+.+. ..+.+++.+||+++.|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 667777776666554421 123578899999999876522222322221 2234688999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++++.|.+.+.+
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-19 Score=133.56 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=93.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccc------------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG------------------------------------------ 50 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~------------------------------------------ 50 (181)
.-.+|+|+|++|+|||||+|.|.+..+..... |..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999876421110 000
Q ss_pred --------e--e--EEEEEE-cCEEEEEEEcCCCCCc-------------cccccccccCccEEEEEEECCCcccHHHHH
Q 030187 51 --------F--N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (181)
Q Consensus 51 --------~--~--~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 104 (181)
+ . ...+.. ....+.+|||||..++ ......+++++|++++|+|.++.+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 0 001111 2356899999998776 455678899999999999876544332221
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
. .++......+.|+++|+||+|+.+... ..+..... ....+.+|+++|+.++.++++.+.
T Consensus 193 ~---~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 193 I---KISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp H---HHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCC
T ss_pred H---HHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCC
Confidence 2 222222225779999999999876432 22222221 123345688899998887776543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-19 Score=131.57 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=78.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcC-Ccccc---------cCccceeEEEEEE----cCEEEEEEEcCCC-------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLG-EIVTT---------IPTIGFNVETVEY----KNISFTVWDVGGQ------- 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~-~~~~~---------~~t~~~~~~~~~~----~~~~~~i~D~~G~------- 71 (181)
.+.-.++|+++|++|+|||||+++|.+. .+... .++.......+.. ....+++||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456689999999999999999998765 33221 1232222222222 2478999999998
Q ss_pred CCcccccc-------ccccCc-------------cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+++..... .+++.. ++++++.+++. .+++.....+...+. ...|+++|+||+|+.
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 168 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCC
Confidence 55555443 343333 33555555432 223333322222222 367899999999987
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
....... ........+...+++++++||+++ |++++|..+.+.+.++
T Consensus 169 ~~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 169 TLKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp CHHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CHHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 5321110 011111112223457889999999 9999999999887653
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=129.44 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------------------Ccc-------cccCccceeEEEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------------------EIV-------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------------------~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G 70 (181)
+.-+|+|+|+.++|||||..+|... ... ....|+......+.+++..++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4569999999999999999999521 111 122356666778899999999999999
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|.+|.......++-+|++|+|+|+.+.=..+... .|..... .++|.++++||+|.....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhcc
Confidence 9999999999999999999999997653333333 3444444 489999999999987653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=128.57 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=93.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc---------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI--------------------------------------- 49 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~--------------------------------------- 49 (181)
...+|+|+|.+|+|||||+|+|.+..+. +..|+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987753 111220
Q ss_pred ----cee----EEEEEEc-CEEEEEEEcCCCCC-------------ccccccccccCccEEEE-EEECCCcccHHHHHHH
Q 030187 50 ----GFN----VETVEYK-NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIF-VVDSNDRDRVVEARDE 106 (181)
Q Consensus 50 ----~~~----~~~~~~~-~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~~~ 106 (181)
++. ...+... ...+.+|||||..+ +......++++++.+++ |.|++..-.-.....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~- 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH-
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH-
Confidence 000 0111222 46799999999532 33455667766665555 555543211111111
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 107 LHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+...+.. .+.|+++|+||+|+.+... .....+.. .........+++++||+++.|++++++.+.+
T Consensus 189 i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc---CCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222222 5789999999999876432 22222211 1111111246889999999999999998875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=124.66 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=99.3
Q ss_pred HHHhhhhcCCcc--cccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc-cHHHHHHHH
Q 030187 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (181)
Q Consensus 32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~ 107 (181)
+++.++..+.+. ...||++..+. +.. .+-++++||+ +++++.++..+++++|++++|||+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888775 46688885443 332 1237899999 9999999999999999999999999987 787777777
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..+.. .++|+++|+||+|+.+... .+++.+.+.. . +++++|||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 65533 4799999999999875422 1223333321 1 46899999999999999987754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=114.34 Aligned_cols=171 Identities=19% Similarity=0.322 Sum_probs=115.0
Q ss_pred HHHhhhccCcceEEEEcCC-CCChHHHHhhhhcCC-cc-------c----ccCccceeE---EEEEE-----------c-
Q 030187 8 LFSRLFAKKEMRILMVGLD-AAGKTTILYKLKLGE-IV-------T----TIPTIGFNV---ETVEY-----------K- 59 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~-~~GKssli~~l~~~~-~~-------~----~~~t~~~~~---~~~~~-----------~- 59 (181)
|+.+...+...++++.||. ..=..+|+.++.... .. . -.+.+.+.+ ..++. +
T Consensus 7 ~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~ 86 (227)
T 3l82_B 7 FLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDR 86 (227)
T ss_dssp SSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------
T ss_pred HHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhh
Confidence 5566777888999999996 445668998887654 11 0 011111100 01111 0
Q ss_pred ----C----EEEEEE------EcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHH---HHHhcCCC-CCCCeE
Q 030187 60 ----N----ISFTVW------DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDAVL 121 (181)
Q Consensus 60 ----~----~~~~i~------D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~pi 121 (181)
+ -++-.. +.+|+.+++..|..|+.++|++|||+|++|.+.++ ....+ ..++.... ..+.|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapL 165 (227)
T 3l82_B 87 AREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165 (227)
T ss_dssp ------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCE
T ss_pred hhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeE
Confidence 0 011222 33489999999999999999999999999887654 44444 44444432 368999
Q ss_pred EEEEeCC-CCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 122 LVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 122 ivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+|+.||. |++......++.+.+++... .+.+.++.|||.+|+|+.|.++||.+.+..|
T Consensus 166 LVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 166 LVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9999995 78888899999999998877 4799999999999999999999999988765
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=127.96 Aligned_cols=159 Identities=13% Similarity=0.142 Sum_probs=74.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---------cCccceeEEEE--EE--cCEEEEEEEcCCCCCccc----
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRP---- 76 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~---- 76 (181)
+.-.++|+++|++|+|||||++.|.+..+... .+|.......+ .. ....+++||++|...+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 34567899999999999999999998765211 12332222111 11 235789999999765421
Q ss_pred ---------------------cccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 77 ---------------------LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 ---------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+...+++++++.+++|+.... .++......+...+. .+.|+++|+||+|+....
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 113345566654454444322 345454433333333 378999999999987542
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....... .....+...+++++++|++++.++++++..+...+
T Consensus 184 ev~~~k~-~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKK-QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHH-HHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHH-HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2211111 11111222345688999999999999888877654
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-18 Score=126.93 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcc---------------------ceeEE----------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTI---------------------GFNVE---------- 54 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t~---------------------~~~~~---------- 54 (181)
..+...|+++|++|+|||||+++|... +. ....++. +....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346689999999999999999999532 10 0111000 00000
Q ss_pred ----------EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 55 ----------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 55 ----------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
.+...+..+.+|||||..+. .......+|++++|+|+...+.++.+.. .....|.++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEE
Confidence 00124578999999995432 2334578999999999876544422211 1124688999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCCc--ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 125 ANKQDLPNAMNAA----EITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||+|+....... ++...+.... ....+.+++++||++|.|++++++.|.+.+.
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999986532222 2222211100 0112356899999999999999999988764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-18 Score=129.66 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc------cCccceeEEEE-----------------EEc---CEEEEEEEcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT------IPTIGFNVETV-----------------EYK---NISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~------~~t~~~~~~~~-----------------~~~---~~~~~i~D~~G 70 (181)
++|+++|.||+|||||+|+|.+.... .. .++.+.....+ ... .+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999887621 11 22222221111 011 36799999999
Q ss_pred CCC----cccc---ccccccCccEEEEEEECCCc
Q 030187 71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 71 ~~~----~~~~---~~~~~~~~d~~ilv~d~~~~ 97 (181)
..+ .+.+ ...+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 2222 23557899999999999875
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=114.95 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=93.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc----------ceeEEEEE-----------------
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE----------------- 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~----------~~~~~~~~----------------- 57 (181)
....+..+|+++|.+|+|||||+++|...... ...+.. +.....+.
T Consensus 25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 25 LRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred hcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 34456789999999999999999999754210 111100 11111111
Q ss_pred -EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--C
Q 030187 58 -YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M 134 (181)
Q Consensus 58 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~ 134 (181)
..+..+.+|||+|+..... .+...++.+++|+|+++.... ... +... .+.|.++++||+|+... .
T Consensus 105 ~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp GGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhh
Confidence 1346788999999521110 111357889999998755321 111 1111 24678999999998642 2
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..+++...+... ..+.+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 173 DVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp CHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334333322110 123578999999999999999999987653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-17 Score=133.84 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=85.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------------Ccc-------cccCccceeEEEEEEc----------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------------EIV-------TTIPTIGFNVETVEYK---------------- 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------------~~~-------~~~~t~~~~~~~~~~~---------------- 59 (181)
++..+|+++|++++|||||+++|... .+. ....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45679999999999999999999753 111 1122444444444443
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+..+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|. .... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999888887765443 3333 478999999999986
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-17 Score=128.78 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=81.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEE---------------------------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVE--------------------------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~--------------------------------- 57 (181)
....+|+|+|.+|+|||||+|+|.+..+. ...++.........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35589999999999999999999988752 22222211000000
Q ss_pred -----EcC---EEEEEEEcCCCCC-----------ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 030187 58 -----YKN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 58 -----~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
... ..+.+|||||... +......++..+|++++|+|+++.........++..+ .. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cC
Confidence 000 2589999999764 3455666788999999999998755455555555443 32 36
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 030187 119 AVLLVFANKQDLPNAMNAAEI 139 (181)
Q Consensus 119 ~piivv~nK~D~~~~~~~~~~ 139 (181)
.|+++|+||+|+.......++
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHH
Confidence 789999999998865433333
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=119.19 Aligned_cols=150 Identities=18% Similarity=0.124 Sum_probs=87.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCccc--------------------eeEE-------E-----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG--------------------FNVE-------T----- 55 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t~~--------------------~~~~-------~----- 55 (181)
....|+++|+||+|||||+|.|.+. +. ....|+.. ..+. .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999852 10 01111100 0000 0
Q ss_pred ---------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 56 ---------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 56 ---------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+...+..+.++||+|.... .......+|.+++|+|++.++..+.... .+ ...|.++++|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0124568899999995322 2344678999999999976533221111 11 2357799999
Q ss_pred CCCCCCCCCH----hHHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 127 KQDLPNAMNA----AEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 127 K~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
|+|+...... ..+...+..... .....+++.+||++|.|+++++++|.+.+
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9998643211 122222221100 11134678899999999999999998765
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-17 Score=129.39 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CC------------ccc-------ccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL--GE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~--~~------------~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
-||+|+|+.++|||||..+|.. +. +.+ ..-|+......+.+++..++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999952 11 111 12255555566778889999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCc------
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHS------ 147 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~------ 147 (181)
.....++-+|++|+|+|+.+.=..+. ...|..... .++|.++++||+|....+... ++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999975422222 233444444 378899999999987654322 2222221100
Q ss_pred --------------------------------------------------ccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 148 --------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 148 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001124677899999999999999998866
Q ss_pred h
Q 030187 178 A 178 (181)
Q Consensus 178 ~ 178 (181)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=112.16 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=90.0
Q ss_pred cCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHH---HHhcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030187 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (181)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~D~~~~~~~~~~~~~ 142 (181)
.+||...+..|..|+.++|++|+|+|++|.+.++ ....+. .++.+.. ..+.|++|+.|| .|++......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4689999999999999999999999999887765 333222 3443322 368999999996 589888899999999
Q ss_pred hCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+++.... +.+.++.|||.+|+|+.|.++||.+.+..|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9988774 789999999999999999999999998765
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=108.98 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~-- 75 (181)
++|+++|.||+|||||+|+|.+.... .. ..|++.+...+...+ ..+++||+||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986631 11 124443333344332 579999999998753
Q ss_pred --cc---ccccccCccEEEEEEECCC
Q 030187 76 --PL---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 76 --~~---~~~~~~~~d~~ilv~d~~~ 96 (181)
.+ +..+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2345789999999999985
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=111.97 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=68.3
Q ss_pred EEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+.+.+|||||..+...... ..+.. +++++++|+....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999876543221 23456 8889999876433333322211111110111367899999999987542
Q ss_pred CHhHHHhhhCC-C----c------------------cc--CcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 135 NAAEITDKLGL-H----S------------------LR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 ~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
..+++.+.+.. . . +. ....+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22111111000 0 0 00 11236789999999999999999988764
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=116.67 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=80.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC--------C------ccc-------ccCccceeEEEEEEc-------CEEEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG--------E------IVT-------TIPTIGFNVETVEYK-------NISFTVWD 67 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~--------~------~~~-------~~~t~~~~~~~~~~~-------~~~~~i~D 67 (181)
+--||+|+|+.++|||||..+|... . +.+ ..-|+......+.+. ++.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3458999999999999999999521 1 111 112444444455553 58999999
Q ss_pred cCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||||.+|.......++-+|++|+|+|+.+.=..+. ...|..... .++|.++++||+|....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccCc
Confidence 99999999999999999999999999975422222 233444444 48999999999998754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=114.72 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=90.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc------CCc--ccccC-ccc------------------ee-EE-E---------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL------GEI--VTTIP-TIG------------------FN-VE-T--------- 55 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~--~~~~~-t~~------------------~~-~~-~--------- 55 (181)
..+...|+++|++|+||||+++.+.+ .+. ....+ +.. .. +. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 34667899999999999999999953 111 01111 000 00 00 0
Q ss_pred -----------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 56 -----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 56 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
+...++.+.+|||||..+.... ....+|++++|+|++..+.++.... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0023578999999997654432 3578999999999865433211100 00 14578999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCCc--ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 125 ANKQDLPNAMNAA----EITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||+|+....... ++...+.... ......+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999987542222 1222111100 0111347889999999999999999988653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=118.30 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=94.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC-cc-------------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TI------------------------------------------- 49 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~-t~------------------------------------------- 49 (181)
...+|+|+|.+++|||||+|.|.+..+. ...+ |.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5579999999999999999999987641 1000 00
Q ss_pred ----ce----eEEEEEE-cCEEEEEEEcCCCCCc-------------cccccccc-cCccEEEEEEECCCcccHHHHHHH
Q 030187 50 ----GF----NVETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDE 106 (181)
Q Consensus 50 ----~~----~~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~ 106 (181)
++ ....+.. ....+.++||||-... ......++ ..+|++++|+|++....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~- 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH-
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH-
Confidence 00 0011112 1245889999995431 12223333 57899999999976433222212
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 107 LHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+...+.. .+.|+++|+||+|+.+.... ..+.. ...........+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222332 47899999999999765332 22222 111111112346788999999999999998876
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=103.00 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=84.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce----------------eEEEEEEc----------------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF----------------NVETVEYK---------------- 59 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~----------------~~~~~~~~---------------- 59 (181)
...+.++|+++|.+|+|||||+++|....+.. ..++++. ....+...
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 34567999999999999999999998653221 1112211 11111100
Q ss_pred ----CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--
Q 030187 60 ----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-- 133 (181)
Q Consensus 60 ----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-- 133 (181)
+..+.++|++|...... .+-...+..+.+.|+........ .+... ...|.++++||+|+.+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~ 181 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVG 181 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHT
T ss_pred HhcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhH
Confidence 11455666666321110 11112344556666432111100 00111 13578999999998642
Q ss_pred CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...+++....... ..+.+++++||++|.|++++|+.|.+.+.+
T Consensus 182 ~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 182 ADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 2333332222110 123478999999999999999999987754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-14 Score=105.52 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccCccE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ 87 (181)
.+|+++|.||+|||||+|.|.+.... . ...|.......+...+.+++++|+||-.+.. ......+++||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 48999999999999999999876521 1 2336666677788899999999999953221 113345688999
Q ss_pred EEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 88 LIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 88 ~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
+++|+|++++..- +.+...+... .....+.|.+++.||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 9999999875321 2222222111 111234555666677664
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=105.29 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-ccc--cCccceeEEEEEE---------------------cCEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-~~~--~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~ 73 (181)
++|+++|+||+|||||+|.|.+... ... ..|+..+...... ....+++||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999986531 111 1122222222221 235799999999876
Q ss_pred ccc----c---ccccccCccEEEEEEECCC
Q 030187 74 IRP----L---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~~~----~---~~~~~~~~d~~ilv~d~~~ 96 (181)
+.. + ...+++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 2 2345789999999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=104.33 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc------CCcc--cccCc-c-------------c-----eeEEE------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPT-I-------------G-----FNVET------------ 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~--~~~~t-~-------------~-----~~~~~------------ 55 (181)
.....++++|++|+|||||++.+.+ ++.. ...++ . + ...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 2211 11110 0 0 00000
Q ss_pred ----------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+...+..+.++||+|..+.. ......+|.+++++|+...+..+...... ...|.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 11246789999999965432 22346899999999986443221111111 123457778
Q ss_pred eCCCCCCCCC-----HhHHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 126 NKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
||+|+..... .+++......... .....+++.+||+++.|++++++.|.+..
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999753211 1222222221110 01123577899999999999999988754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=98.27 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (181)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 7888888889999999999999999886 88877777765443 5799999999999875421 12222211
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+..+++++++||++|.|++++++.+..
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 112457899999999999999987654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=97.56 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 74 (181)
+...+|+++|+||+|||||+|.|.+.... . ...|+..+...+... ...+++||+||..++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35689999999999999999999987542 1 112344444344332 235999999998765
Q ss_pred cc-------cccccccCccEEEEEEECCCccc
Q 030187 75 RP-------LWRHYFQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~~ilv~d~~~~~s 99 (181)
.. .+..+++++|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 45677899999999999876443
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.7e-10 Score=87.03 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=88.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cCc-----------cceeEEEE----------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV---------------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~~---~~t-----------~~~~~~~~---------------- 56 (181)
.+...|+++|++|+||||++++|. +.+.. .. .+. .++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 33311 10 000 01111110
Q ss_pred -EEcCEEEEEEEcCCCCCccc-ccc---cc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCC
Q 030187 57 -EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQ 128 (181)
Q Consensus 57 -~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~ 128 (181)
...+..+.++||||...... .+. .. ...+|.+++|+|+............+.+ ..|+ .+|+||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCC
Confidence 11457899999999764321 111 11 1268999999999765332222121211 2454 8899999
Q ss_pred CCCCCCC-HhHHHhhhCCCcc-----cC-cc----eEEEEecccCCCC-HHHHHHHHHHH
Q 030187 129 DLPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN 176 (181)
Q Consensus 129 D~~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~Sa~~~~~-v~~~~~~l~~~ 176 (181)
|...... ...+....+.+.. +. .+ .+.+.+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9875433 2234444443210 00 00 1223479999999 99999988755
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-10 Score=84.04 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=57.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcC-----------------EEEEEEEcCCCCC-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK- 73 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~- 73 (181)
...+++++|++|+|||||+|.|.+... ....| |+..+...+...+ ..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999998653 12222 4444444444433 4689999999432
Q ss_pred ------ccccccccccCccEEEEEEECCC
Q 030187 74 ------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ------~~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
..+.+...++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23344556789999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-10 Score=85.17 Aligned_cols=112 Identities=9% Similarity=0.130 Sum_probs=66.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC-----Cc--ccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc--------cccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG-----EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~-----~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (181)
..+++++|.+|+|||||+|.|.+. .. ....|........+... ..+.++||||-...... ...+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999875 21 12222222222223322 23799999995432211 1111
Q ss_pred c--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 82 F--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 82 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+ ...+.+++++++...-.+..+.. +......+.|+++++||.|..+..
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccc
Confidence 1 56899999999842211111100 111222578999999999987643
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=78.49 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----------cCccceeEEEEEE--c--CEEEEEEEcCCCCCccc------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDKIRP------ 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~------ 76 (181)
.++++++|++|+|||||+|.|.+...... ..+.......+.. . ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 37899999999999999999976432110 1111111111111 1 24689999998421100
Q ss_pred -c---------------------ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 77 -L---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 77 -~---------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
. ..-.+..+++.++++|... ..+......+...+.. ..++++|++|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence 0 0011224688889998541 2222333333333332 3889999999998764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-10 Score=86.44 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 148 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (181)
.+++|+..+..+.+.++++++|+|++++. ......+.+++ .+.|+++|+||+|+..... .+.+.+.+. ..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 46788888999999999999999998642 11111222221 3789999999999975432 112211100 001
Q ss_pred cCcce---EEEEecccCCCCHHHHHHHHHHHh
Q 030187 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+..++ .++.+||++|.|++++++.|.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 11122 688999999999999999987654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=82.72 Aligned_cols=116 Identities=9% Similarity=0.098 Sum_probs=66.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC------cccccCccce--eEEEEEEcCEEEEEEEcCCCCCcccc--------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 79 (181)
...+++++|.+|+|||||+|+|.+.. .....+..+. ....+... ..+.++||||-...... ..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34789999999999999999998752 1111111111 11222222 13899999995432211 11
Q ss_pred cc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030187 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (181)
Q Consensus 80 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 137 (181)
.. ....+.++++++....-.+..+.. +......+.|+++++||.|..+....+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~ 292 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLE 292 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHH
Confidence 11 356788899998732211111100 111222578999999999987654333
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-10 Score=84.76 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=66.4
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh---h-hC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD---K-LG 144 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~---~-~~ 144 (181)
.+++|++....+++.++++++|+|++++.+ .....+.+.+ .+.|+++|+||+|+..... .+.+.+ . +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999988899999999999988753 1111122222 3689999999999976532 121111 1 11
Q ss_pred CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.... ....++.+||++|.|++++++.+.+.+.
T Consensus 130 ~~g~--~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGL--CPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTC--CCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCC--CcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111 1126789999999999999999876543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=78.51 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=61.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEE--cC--EEEEEEEcCCCCCccc----------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY--KN--ISFTVWDVGGQDKIRP---------- 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~--~~--~~~~i~D~~G~~~~~~---------- 76 (181)
..++++++|++|+|||||+|.|.+..+... .+........+.. .. ..+.++|++|......
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 445699999999999999999988653211 1111111111211 22 3689999998543210
Q ss_pred ----cc----cc---------cccC--ccEEE-EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 77 ----LW----RH---------YFQN--TQGLI-FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 ----~~----~~---------~~~~--~d~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.+ .. .... +|+++ ++.|.. .++......+...+. .+.|+++|.||+|...+.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~--~~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG--HSLKSLDLVTMKKLD----SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC--CCCCHHHHHHHHHHh----hCCCEEEEEcchhccchH
Confidence 00 00 1112 23444 444543 233344444444444 478999999999987653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=77.80 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=83.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc-------CccceeEEEEEEcC-EEEEEEEcCCCCCcccccc-----ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-------PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWR-----HYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~-----~~~ 82 (181)
....++++|++|+|||||+|.+.+-...... ++.. ....+.... ..+.++|++|......... ..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4568999999999999999999874321111 1100 011122222 2578999998532111111 112
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCC------c
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLH------S 147 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~~~~~------~ 147 (181)
...+..+. ++... ++..+..+...+.. .+.|+++|.||.|+. +....+++.+.+... .
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 66642 12223333333332 368999999999863 222223222211110 0
Q ss_pred ccCcceEEEEecc--cCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCA--TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa--~~~~~v~~~~~~l~~~l~ 178 (181)
.......++.+|+ .++.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 0001124667899 566679999999988764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-09 Score=76.61 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=67.3
Q ss_pred EEEcCCCC-CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 65 i~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
+-..|||. .........+.++|+++.|+|+.++.+... ..+.+++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 33467876 455666777899999999999988766542 1122222 378999999999998643333333333
Q ss_pred CCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
. ..+++++.+||+++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2 12346788999999999999998877654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-09 Score=76.32 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~ 73 (181)
++++++|.+|+|||||+|+|.+.......++.+.+. ..+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 699999999999999999999877543333333221 11222 34689999999654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=73.88 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=36.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~ 72 (181)
....++++++|.||+|||||+|+|.+.......++.+.+. ..+... ..+.++||||-.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence 3466899999999999999999999876432222222111 112222 368999999964
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-09 Score=79.51 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------------------Cccc---eeEEEE-EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------------------PTIG---FNVETV-EY 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------------------~t~~---~~~~~~-~~ 58 (181)
...|+++|++|+||||+++.|... +. .... .+.+ +....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999642 11 0000 0000 000000 01
Q ss_pred cCEEEEEEEcCCCCCccccc------cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~ 130 (181)
.+..+.++||||........ ......+|.+++|+|+..... ....... +. +.. | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~-~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKA-FK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHH-HH----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHH-Hh----hcccCCeEEEEeCCCC
Confidence 45679999999976532111 111236899999999864432 1121212 22 234 4 7899999998
Q ss_pred CC
Q 030187 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-07 Score=72.91 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=41.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-c-----ccCccceeEEEEE---EcCEEEEEEEcCCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-----TIPTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~-----~~~t~~~~~~~~~---~~~~~~~i~D~~G~~~ 73 (181)
..+...|+|+|.||+|||||+|+|.+.... . ...|.++..+... ..+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 556689999999999999999999987631 1 1223344332222 2457899999999543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-07 Score=70.33 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=64.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc------CCc--cc---cc-----------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL------GEI--VT---TI-----------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~------~~~--~~---~~-----------~t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..|.. .+. .. .. ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999863 211 00 00 0111111110
Q ss_pred EEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...++.+.++||+|......... .....+|.+++|+|+............+.+ .-.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCC
Confidence 01247899999999654332111 112358999999998754333333222222 12346789999998
Q ss_pred CCC
Q 030187 131 PNA 133 (181)
Q Consensus 131 ~~~ 133 (181)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=70.30 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..++|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 369999999999999999998753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=5.6e-07 Score=66.31 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQR 151 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~ 151 (181)
.+......++|.+++|+|+.+|..-......+...... .++|.++|+||+|+.+... .+.+.+.+. ..
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~ 149 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NI 149 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hC
Confidence 33444678999999999998765444444444333333 5788999999999987533 233433331 12
Q ss_pred ceEEEEecccCCCCHHHHHHH
Q 030187 152 HWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
+++++.+||.++.|++++++.
T Consensus 150 g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGGG
T ss_pred CCeEEEEecCCCCCHHHHHhh
Confidence 335778999999998876653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-07 Score=66.68 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=59.1
Q ss_pred cCCCC-CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030187 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||. .........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+.+.+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 36665 34445666778999999999998775543211 11 1 1 7899999999999865333333332321
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+.++ .+||+++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12345 7999999999998887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-06 Score=62.69 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=62.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---c-----------cCccceeEEE-----------------EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---T-----------IPTIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~------~~~~--~---~-----------~~t~~~~~~~-----------------~~ 57 (181)
...|+++|++|+||||++..|.. .+.. . . ....+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999862 2110 0 0 0011111110 00
Q ss_pred EcCEEEEEEEcCCCCC--cccc----ccc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 58 YKNISFTVWDVGGQDK--IRPL----WRH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~--~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..+..+.++||||... .... ... ..-+++.+++|+|+............+.+. -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1256788999999654 2111 111 112468999999997544333333333332 234678999999
Q ss_pred CCC
Q 030187 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=62.84 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=61.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--ccc---C-----------ccceeEEE-----------------EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--TTI---P-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~------~~~~--~~~---~-----------t~~~~~~~-----------------~~ 57 (181)
...++++|++|+||||++..+.. .+.. ... + ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44788999999999999999862 2210 000 0 00111100 01
Q ss_pred EcCEEEEEEEcCCCCC--ccc-ccc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030187 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
..++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456799999999876 321 111 12346899999999864322 2222222211 234 67889999
Q ss_pred CCCC
Q 030187 129 DLPN 132 (181)
Q Consensus 129 D~~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9754
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-07 Score=73.01 Aligned_cols=93 Identities=28% Similarity=0.293 Sum_probs=54.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEE----EEcCEEEEEEEcCCCC--Cccccc--------c
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQD--KIRPLW--------R 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~G~~--~~~~~~--------~ 79 (181)
......|+++|.+|+||||+.++|.........++..+....+ ........+||..|.+ +.+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999997543211122221110000 0011344678888873 233333 4
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHH
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDEL 107 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~ 107 (181)
.++...++.++|+|.++. +......|+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~ 142 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIF 142 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHH
Confidence 556667888999999877 444444443
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-05 Score=61.72 Aligned_cols=121 Identities=22% Similarity=0.220 Sum_probs=66.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhh-------cCCcc--cccC--------------ccceeEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK-------LGEIV--TTIP--------------TIGFNVET----------------- 55 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~-------~~~~~--~~~~--------------t~~~~~~~----------------- 55 (181)
....|+++|++|+||||++..|. +.+.. ...+ ..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999886 32210 0000 01111110
Q ss_pred EEEcCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030187 56 VEYKNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
....++.+.++||||....... .. .....++.+++|+|+............+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecC
Confidence 0113578999999997654322 11 123468999999998754333222221211 223 34689999
Q ss_pred CCCCCC-CHhHHHhhhC
Q 030187 129 DLPNAM-NAAEITDKLG 144 (181)
Q Consensus 129 D~~~~~-~~~~~~~~~~ 144 (181)
|..... ....+....+
T Consensus 251 D~~~~~g~~l~i~~~~~ 267 (433)
T 2xxa_A 251 DGDARGGAALSIRHITG 267 (433)
T ss_dssp TSSSCCTHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHC
Confidence 986443 2223444444
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=59.10 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.--++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.77 E-value=8e-05 Score=55.98 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=52.8
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEE
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...++|.+++|... .|..-......+.-.... .++|.++|+||+|+.++.. .+.+...+. ..+++++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 46789999988664 454333333333222222 4678899999999986532 122333222 23445788
Q ss_pred ecccCCCCHHHHHHHH
Q 030187 158 TCATSGEGLYEGLDWL 173 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l 173 (181)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.8e-05 Score=58.83 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+..-|.|+|++++|||+|+|+|.+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 44567899999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.5e-05 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.9e-05 Score=58.47 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=37.5
Q ss_pred cCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.++||||....... .. ...-.++.+++|+|+..... .......+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 3567999999997654321 11 11125899999999864322 22222222111 112467889999754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=2.7e-05 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.6e-05 Score=54.83 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhh
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+.+......+.-.|+++|++||||||+++.|.
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33333444456789999999999999999998
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=3.3e-05 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.9e-05 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.2e-05 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998753
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.47 E-value=8.1e-05 Score=51.27 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=22.8
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+....--|+++||+|+|||||++.|...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34445668999999999999999999753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.46 E-value=6.7e-05 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999999999998864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.1e-05 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|||||||++.+..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3588999999999999996543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.44 E-value=6.6e-05 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8.6e-05 Score=50.16 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=23.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+......-.++++|++|+|||||++.+.+.
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333344578999999999999999888654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7e-05 Score=52.53 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++||+|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999998763
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.42 E-value=7.3e-05 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++|+|||||++.+.+-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999998763
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.41 E-value=9.8e-05 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...--|+++||+||||||+++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34567999999999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.41 E-value=8.2e-05 Score=50.80 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+|+||+|+|||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999964
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-|+++|++||||||+++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999988764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-.|+++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999987643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|+++|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=49.10 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00028 Score=47.54 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+.........-.+++.|++|+|||++++.+...
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444444455678999999999999999988653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=48.50 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030187 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l 37 (181)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999987643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=44.83 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=44.8
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~ 132 (181)
.+.+.++|+|+.. .......+..+|.++++...+.. + ......+..+.... ..++.++.+|+|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4789999999876 33344556779999999987643 3 44444333332211 124567899999999543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=49.66 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|+++|++||||||+.+.|..
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345799999999999999998854
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00021 Score=49.13 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.......|++.|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999998864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=21.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhh
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.+..+-|+++|++|||||||++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4456789999999999999998884
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=47.90 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44478999999999999999987654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=48.02 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00018 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998765
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999988764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|||||||++.+.+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999987653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00028 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+...|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999988654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00026 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999887764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00036 Score=46.80 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+.........-.+++.|++|+|||+++..+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444444455678999999999999999888643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=49.32 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
+|++.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999884
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00029 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
....-.|+++|++||||||+.+.|.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999888643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00029 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
-...=.++++|++||||||+++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34445799999999999999998875
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..=.++|+|++|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 445899999999999999998864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0003 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|++.|++||||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999853
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00028 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++||||||+...|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998863
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998865
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.15 E-value=7.7e-05 Score=54.96 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999998754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00024 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887653
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 36889999999999999988764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0003 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999987653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++|++|+|||||++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00027 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00055 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999998864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468999999999999999998754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00029 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999998764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999874
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00029 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35567899999999999999998865
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998853
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00016 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cceEEEEcCCCCChHHHHhhhh-cC
Q 030187 17 EMRILMVGLDAAGKTTILYKLK-LG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~-~~ 40 (181)
.--++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00037 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00037 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999998764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00032 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00036 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+...|++.|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36889999999999999998764
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00036 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++...|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 455678999999999999999988754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00038 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
....|+++|++||||||+.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=47.39 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..++...|+++|.+||||||+.+.|..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334567899999999999999998864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00043 Score=47.85 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
.-.++++|++|+|||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999998
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00041 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
....|++.|++|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44679999999999999999886
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00043 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00044 Score=47.72 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00044 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-|++.|++||||||+...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|++||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988854
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00042 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00041 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00042 Score=50.67 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhh
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
......|+|+|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4566889999999999999998774
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00018 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=47.19 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+...|++.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00033 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00056 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+....|+++|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999987
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0003 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 47899999999999999988753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.001 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00052 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999887653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0006 Score=50.17 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Ccc--ccc---C-----------ccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--TTI---P-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~~--~~~---~-----------t~~~~~~~~----------------- 56 (181)
..-.++++|++||||||+++.+.+. +.. ... + ..++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998631 110 000 0 001111000
Q ss_pred EEcCEEEEEEEcCCCCCccccc------------cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPLW------------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~------------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...+..+.++|++|........ ......++.++++.|+............+.+... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 0013456789999965432211 1223457888999998765444333333332222 24788
Q ss_pred EeCCCCCCC-CCHhHHHhhhCCC
Q 030187 125 ANKQDLPNA-MNAAEITDKLGLH 146 (181)
Q Consensus 125 ~nK~D~~~~-~~~~~~~~~~~~~ 146 (181)
+||.|.... -....+....+.+
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVP 276 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCC
T ss_pred EECCcccccccHHHHHHHHHCCC
Confidence 899986543 2334455555543
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00049 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=18.9
Q ss_pred Ccce-EEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~-i~v~G~~~~GKssli~~l~~ 39 (181)
...+ |+++|+|||||+|...+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344 56789999999999998864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999987643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00057 Score=45.37 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00062 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00048 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00072 Score=50.87 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.7
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+......=.++|+|++||||||+++.+.+
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33334444899999999999999998865
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00048 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999988753
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00061 Score=47.71 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00052 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 36799999999999999988764
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00066 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
-..++++|++|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=50.61 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0004 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00041 Score=49.59 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00071 Score=45.82 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=16.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999863
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00056 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++|||||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998764
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00078 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999998764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00054 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++++|++|||||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4558999999999999999998764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00071 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00025 Score=49.10 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00061 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36789999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5789999999999999999764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00059 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00072 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999988854
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00062 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999873
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0009 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...=.++++|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00064 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36789999999999999998764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00079 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+..+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999886
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00073 Score=45.83 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=48.72 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00069 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00075 Score=45.56 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|++||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988854
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0007 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999987643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00082 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|+++|++||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00073 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36789999999999999998764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00091 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+..-|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44568999999999999999988764
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0009 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.|++.|.+||||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998853
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=50.43 Aligned_cols=31 Identities=35% Similarity=0.481 Sum_probs=23.7
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+........=.++|+|++||||||+++.+.+
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444334444689999999999999999875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0018 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|++|+|||+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00076 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++|++|+|||||+..+.+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.+.+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00082 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00082 Score=50.58 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34789999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00058 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 36889999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0017 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++|+|++||||||+++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999998754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0009 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00088 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999988753
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=40.60 Aligned_cols=67 Identities=4% Similarity=-0.075 Sum_probs=43.7
Q ss_pred CEEEEEEEcCCC-CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+.+.++|+|+. ... .....+..+|.++++...+ ..++......+..+.... +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 467999999987 432 2344567799999999875 344444444443332211 455889999999764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00094 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36899999999999999988763
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0019 Score=46.70 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-.+++.|+||+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999988643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 557899999999999999998864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.002 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0017 Score=44.99 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++|+||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0015 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......+++.|++|+|||++...+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999988653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+|||||+..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999976
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=47.51 Aligned_cols=31 Identities=29% Similarity=0.198 Sum_probs=22.2
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+....++...|++.|..||||||+++.|...
T Consensus 17 ~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 17 ASSEGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ------CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccccccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3344456688999999999999999988754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00099 Score=52.13 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++|+||||+++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34799999999999999999864
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.001 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998854
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00056 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999987643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998865
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0018 Score=42.01 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......|++.|++|+|||++...+...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 356678999999999999999988654
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.++.|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=51.42 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
...-.++|+|+.|||||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355689999999999999999987643
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0027 Score=49.49 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+..-......-+++++|+||+|||++++.+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444444456678999999999999999888643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999998864
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+.=+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999988843
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0022 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998866
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.003 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.003 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567999999999999999988753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999998875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.003 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+|+++|++|+||||+...|..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456899999999999999987753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0035 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+++.|+||+|||++...+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999976643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0028 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+++.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0023 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.++.++|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0037 Score=48.33 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc------------------CCcc---c-ccCccceeEEE--E--EE---cCEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL------------------GEIV---T-TIPTIGFNVET--V--EY---KNISFT 64 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~------------------~~~~---~-~~~t~~~~~~~--~--~~---~~~~~~ 64 (181)
.....-|.|+|+.++|||+|+|.+.. ..|. + ..-|.|+-.+. + .. .++.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 44556777999999999999996531 1121 1 12255654432 2 11 247799
Q ss_pred EEEcCCCCC
Q 030187 65 VWDVGGQDK 73 (181)
Q Consensus 65 i~D~~G~~~ 73 (181)
+.||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0012 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++.+-|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999988853
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
--++++|++|+|||||+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999988775
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 37899999999999999988764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=41.48 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.....|++.|++|+|||++...+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45578999999999999999877654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++-+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0026 Score=46.55 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
..-.++++|++|+||||++..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999999885
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=46.45 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=19.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-+++.|+||+|||++...+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999998864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999998864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=47.30 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998853
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.003 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|+||+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999998875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0029 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|+||+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 47899999999999999988754
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=49.56 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+.=+++++|++|+|||||++.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999887653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--+.++|++|+|||||+..+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998753
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0046 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0042 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.3
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999998874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=47.29 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......-.+.+.|+||+|||++++.+...
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557789999999999999999988643
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0034 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999875
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0029 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988854
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++-+.+-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.003 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-|+++|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999997553
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999988764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.+++.|++|+|||+|++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999998865
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.005 Score=47.49 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=24.3
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+.-....-.|++.||||+|||++...+.+.
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3333445668999999999999999988753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999988753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0034 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++-+.+-.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999987643
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0077 Score=43.32 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=23.9
Q ss_pred HHHhhhccC---cceEEEEcCCCCChHHHHhhhhc
Q 030187 8 LFSRLFAKK---EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~---~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+..+.++. .-.|++.||||+|||.|+..+..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344444443 23599999999999999998875
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=46.52 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0068 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|+||+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-.+++.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0059 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.+.-....--|++.||||+|||+|...+.+.
T Consensus 207 f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33344455678999999999999999988753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0058 Score=47.04 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=21.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+--|++.||||+|||+++..+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34445699999999999999998875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0039 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999888653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0043 Score=45.17 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....+++.|+||+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.004 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0074 Score=49.84 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.++.........-.++++|++|+|||++++.+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34445555556778999999999999999988864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0064 Score=46.37 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.+.-....--|++.||||+|||.|...+.+
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4444445567899999999999999998875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=46.97 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030187 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~ 38 (181)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999875
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0075 Score=49.83 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=26.5
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++..-......-+++++|+||+|||++++.+...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34444444566678999999999999999888643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0049 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0041 Score=47.50 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
--++|+|++|+|||||+..++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 368999999999999999875
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.005 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0044 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.003 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|++|+|||+++..+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999998864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.|++.|+||+|||+++..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999988753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0047 Score=43.41 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0061 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0062 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++.|++||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030187 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~ 41 (181)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0059 Score=42.47 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++-|++||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3466899999999999999998853
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.005 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|+|+||+|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999964
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.01 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+++.|++|+|||++++.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3445799999999999999998854
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.01 Score=43.45 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+++.|++|+|||+++..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999888654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0035 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+...|+++|++|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 5568999999999999999988654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0065 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|+||+|||+++..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 181 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-51 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 1e-45 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 1e-40 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-38 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-38 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-38 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 9e-35 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-33 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 4e-33 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-30 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 3e-30 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-28 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-26 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-25 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 6e-25 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 9e-25 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-24 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-23 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 5e-22 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-21 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 9e-21 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-20 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-19 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 8e-18 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-17 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 4e-17 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 1e-16 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-16 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 5e-15 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-13 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-13 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-12 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 5e-12 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-11 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-11 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 3e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 7e-11 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-10 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 5e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 7e-09 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 8e-09 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-08 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-08 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 6e-08 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-07 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 2e-06 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-06 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 3e-06 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 3e-06 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-05 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-05 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-04 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 2e-04 | |
| d1ls1a2 | 207 | c.37.1.10 (A:89-295) GTPase domain of the signal s | 3e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 5e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.002 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 0.002 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.004 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 159 bits (403), Expect = 5e-51
Identities = 122/171 (71%), Positives = 147/171 (85%)
Query: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ S++F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 146 bits (368), Expect = 1e-45
Identities = 101/180 (56%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 2 GLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
G F+ +F +L+ KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 133 bits (335), Expect = 1e-40
Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Query: 2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
G+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A L
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
L+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+ + +
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 127 bits (320), Expect = 1e-38
Identities = 149/160 (93%), Positives = 155/160 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 126 bits (317), Expect = 4e-38
Identities = 80/165 (48%), Positives = 115/165 (69%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A++
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 126 bits (316), Expect = 9e-38
Identities = 80/172 (46%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 65
+ +L + +E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + V
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64
Query: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125
WD+GGQ KIRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FA
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
NKQDL A A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 118 bits (296), Expect = 9e-35
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 6 TKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
+ + L KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+D+GG + R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+
Sbjct: 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120
Query: 125 ANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDW 172
NK D P A++ + + GL+ L R + +G EG W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180
Query: 173 LSNNI 177
++ I
Sbjct: 181 MAQYI 185
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (286), Expect = 2e-33
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L +GLD AGKTT+L+ LK + T PT E + NI FT +D+GG + R LW
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA++ AE
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 ITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDWLS 174
+ LGL + QR + G E WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 115 bits (288), Expect = 4e-33
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+ R+L++G +GK+TI+ ++++ +V T G + ++F ++DVGGQ
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 75 RPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
R W F + +IFVV + N +R+ EA + + N LR +++F
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 125 ANKQDLP 131
NKQDL
Sbjct: 121 LNKQDLL 127
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (271), Expect = 1e-30
Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+T + ++++ + +PT G + +++ F + DVGGQ R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W H F+N ++F+V ++ D+V+ E++ ++ +++ +++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDLPNAMNAAEITDK-----------------------LGLHSLRQRHWYIQSTCATS 162
NK+DL + L+ + Y TCAT
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GEGLYEGLDWLSNNI 177
E + + + I
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 106 bits (264), Expect = 3e-30
Identities = 49/163 (30%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ +WD+GGQ +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP A+
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ E+ +K+ L +++ R S + + L WL +
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 102 bits (255), Expect = 1e-28
Identities = 95/166 (57%), Positives = 125/166 (75%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG I
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
RP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ AM
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
++E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.6 bits (237), Expect = 6e-26
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
M+IL++G GK+ +L + + + I TIG + + + K + +WD GQ+
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D + + +LLV NK D+
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV-GNKSDMET 121
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ A+ G ++ + A + + + E L+ I K
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 95.0 bits (235), Expect = 2e-25
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+++L++G +GK+TI+ ++K+ G +K++ F ++DVGGQ R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEAR----------DELHRMLNEDELRDAVLLVFA 125
W H F+ +IF V +D D V+ + N D +++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 N-KQDLPNAMNAAEITDKLGLH----------------------SLRQRHWYIQSTCATS 162
N K + + +T + + Y TCAT
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 163 GEGLYEGLDWLSNNI 177
+ + D +++ I
Sbjct: 177 TKNVQFVFDAVTDVI 191
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.3 bits (231), Expect = 6e-25
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ T I TIG F + T+E K I +WD GQ+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G++ V D + R+ + + +++
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ E G T A + + L+ +I K
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.4 bits (231), Expect = 9e-25
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+ ++IL++G +GK+T L ++++ PT G + E KN+ F + DVGGQ R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
W F + ++F+V S++ D+V+ E+ + ++N + +++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQ-DLPNAMNAAEITDK 142
NK L + I D
Sbjct: 119 NKTDLLEEKVQVVSIKDY 136
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (222), Expect = 9e-24
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDVGGQ 71
++IL++G GK+++L + + +V+ +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y++ QG+I V D RD V+ + L+ + D V ++ NK D
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
E+ GL R+ A + +G+ + L I
Sbjct: 125 --KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.5 bits (223), Expect = 2e-23
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 75
+L VGL +GKT + +L G+ T +I + + N + G +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
L + + + ++FVVDS R V + + L+++L + LL+ NKQD+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
A +A I +L R +
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.1 bits (212), Expect = 5e-22
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
++L++G GK+ +L + I TIG + + ++ K + +WD GQ+
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ + G+I V D D++ + L + LLV
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ ++ T A + + ++ I
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQIKES 170
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (206), Expect = 3e-21
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L++ + G + V K + +WD GQ+
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R+ + L ++L K +
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ ++ T A +GE + E + I NK
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILNK 169
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (203), Expect = 9e-21
Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 18/178 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--------------FNVETVEYKNIS 62
+++L +G GKTT LY+ + I T+G N + + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ NK DLP+ E + T A +G+ + + ++ L + I +
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.3 bits (197), Expect = 5e-20
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQD 72
+IL++G + GKT+ L++ + K I +WD GQ+
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G I + D + + +D ++ VLLV
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ ++E + A + + + L + I K
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 3e-19
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
++++VG GKT +L + K G + T I T+G + V+ + +WD GQ
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y+++ L+ + D ++ + L + + A++L+
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 124
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + G ++ T A +G + ++ +
Sbjct: 125 --AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (182), Expect = 8e-18
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNI----SFTVWDVGGQD 72
++++++G A GK++I+ + + PTIG T F +WD GQ+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++N Q + V D ++AR + + + +D ++ + NK D+
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQ 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
++ + G ++ T A +GE + + + I K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.1 bits (183), Expect = 1e-17
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
I++ G +GKT++L L + T+ + + +Y T+ D G K+R
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 79 RHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
Y + + V + D ++ + L +L+ E +L+ NK +L
Sbjct: 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123
Query: 131 PNAMNAAEITDKL 143
A ++I D L
Sbjct: 124 FTARPPSKIKDAL 136
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 4e-17
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG V+ K I +WD GQ+
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G + V D L + + + + V+++ NK DL +
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ + + T A + E + I
Sbjct: 124 LRA---VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 1e-16
Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G + F ++TVE + + +WD GQ+
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + + Y+++ LI D + + L + + +LV
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
+ + + Y T A + + + L+ + ++A
Sbjct: 126 REV----SQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (173), Expect = 1e-16
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + P G + V + I +WD GQ+
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + R Y++ G + V D R + V+++ NK DL
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ +T + + A +GE + + + I
Sbjct: 124 QRD---VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 5e-15
Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 9/168 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L + +T G + ++ K I +WD GQ+
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
R + R Y++ G + V D R+ + + V+++ NK DL +
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRET-FNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ + G R+ T A + + E + I K
Sbjct: 123 RRDVKR---EEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 1e-13
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + + V+ + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG I V ++ + + +++ +++ NK DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ G + T A S + E + +
Sbjct: 122 SERE---VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 3e-13
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 9/166 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ + ++ + F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ L Y++ Q I V D + + A++ + + + + L
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-- 123
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N + + T A + + E ++ +
Sbjct: 124 --ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 3e-12
Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 15/169 (8%)
Query: 19 RILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+++++G GK++++ + + T V+ ++ +WD GQ++
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 74 IRPLWRHYFQNTQGLI---FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R L +++ + + V DS + + E + E ++ NK D+
Sbjct: 68 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
+ E + + T A + + +
Sbjct: 128 SERQVSTEEAQA-----WCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 5e-12
Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 9/165 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
+++++G GKT+++ + + T + K ++ +WD GQ+
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++++ G I V D D D + ++ + + + +V
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + T A +G+ E L +
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDV 68
A +E+++ ++G GK++I+++ I + + + F +WD
Sbjct: 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
G ++ R L Y++ + I V D + ++ + + V +
Sbjct: 61 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
H T A + + E +S I +
Sbjct: 121 LTDVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRIPS 167
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (138), Expect = 2e-11
Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 5/168 (2%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
++++++G GKT+++ + + TIG V+ + ++ +WD GQ+
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + L +++ + V D + L + RD F + +
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
N T + + + T A + + ++ N +
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 57.3 bits (137), Expect = 3e-11
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V + ++ + + + D GQ+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ K + Q + T A + + + L I +
Sbjct: 126 QVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.8 bits (133), Expect = 7e-11
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGG 70
+ +I+++G GKT + Y+ G T TIG + ++ + I +WD G
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
Query: 71 QDKIRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
Q++ R HY++N ++FV D + + D ++ NK D
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120
Query: 130 LPNAMN 135
L +A+
Sbjct: 121 LRSAIQ 126
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 4e-10
Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQD 72
+++++VG A GK++++ + G V +++ +WD GQ+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + + Y++ Q + V + DR+ +++ E D + NK DL +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
I ++ ++ T + E +L+
Sbjct: 121 DSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 5e-10
Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+++ +G + GKT+++ + T +E + I +WD GQ++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
R L Y +++ + V D + + + + + E ++LV NK DL +
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADK 120
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+++ + G ++ + T A +G + + ++ +
Sbjct: 121 R---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-09
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 12/167 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYK----NISFTVWDVGGQDK 73
++++VG GKTT + + GE + T+G V + + I F VWD GQ+K
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L Y+ Q ++ + RV + +++ NK D+ +
Sbjct: 65 FGGLRDGYYIQAQ--CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
A+ R+++ A S + WL+ +
Sbjct: 123 KVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (119), Expect = 8e-09
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 10/169 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-----FNVETVEYKNISFTVWDVGGQ 71
++++++G GKT+++++ + TIG V K + VWD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQ 128
++ + L +++ + V D + + N + ++ NK
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
D + L T A + + + ++ +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSA 170
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 1e-08
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+ ++++VG GK+ + + V+ + + +V+ + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + G + V NDR E ++L + D +++ NK DL
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ H A + E + L +
Sbjct: 124 ESQR---QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 1e-08
Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG---FNVETVEYKNISFTVWDVGGQ 71
E ++++VG GK+ + +L V PTI ++ + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y + +G + V N+ + ++ + D +++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + YI+ T A + +G+ + L I
Sbjct: 122 ARTVESRQAQD---LARSYGIPYIE-TSAKTRQGVEDAFYTLVREI 163
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 2e-08
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 15/178 (8%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVG 69
+ + ++ ++VG A GKT +L + T+ V+ K ++ +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
GQ+ L + T + R + + + + +++ K D
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWLSNNI 177
L + + E + L + + A + GL D +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 6e-08
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 6/166 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G + PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + + + A S + E L I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDLVRQI 165
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 1e-07
Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 17/180 (9%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNISFTVWDVGGQ 71
+ ++ ++VG A GKT +L + +PT+ N + + ++D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ L + T + +++ + L+ + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 132 NAMNAAEITDKLGLHSLRQ-----------RHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ + E K + Y++ A + +GL D
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE-CSALTQKGLKNVFDEAILAALEP 179
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 2e-07
Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN---VETVEYKNISFTVWDVGGQDK 73
++++VG A GKT +L + +PT+ N V+ K + +WD G +
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + +T ++ + D + ++ + + +++ NK+DL N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121
Query: 134 MNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWL 173
+ K+ ++ + A + +G+ E +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 2e-06
Identities = 21/169 (12%), Positives = 58/169 (34%), Gaps = 8/169 (4%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ R+ + G GK++++ + G + T+ V + + + + D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML-NEDELRDAVLLVFANKQDLP 131
+ + R I V R + E + ++ + ++ +++ NK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK--CD 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ + + + + + +++ T A + E L N +
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFME-TSAKLNHNVKELFQELLNLEKRR 167
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 2e-06
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 6/168 (3%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 72
++++VG GK+ + + V TI ++ + V D GQ+
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + Y + G + V D+ +L + +++ ANK DL
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM- 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
D+ + + YI+++ + + L I +
Sbjct: 123 -HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 3e-06
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+I++VG GKT +L+ V T+ ++ + I ++WD G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + ++ ++ D + + + + + E +LLV K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRT 120
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 3e-06
Identities = 14/162 (8%), Positives = 35/162 (21%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L++G GK+ + E G + + V +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
V + R + + + + + E
Sbjct: 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
++ G T A + + + I +
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-05
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 7/166 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQ 71
K +I ++G + GK+++ + G+ V + I + TV + + D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
D+ + Y + G I V + ++L+ +++ NK+DL
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
++ + +++ + A + + +
Sbjct: 123 MERV--ISYEEGKALAESWNAAFLE-SSAKENQTAVDVFRRIILEA 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-05
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
+++ R+++VG GK+ + + VT + ++ + + D G
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ + Y + +G + V DR E ++L + + +++ NK DL
Sbjct: 63 QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122
Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + RQ A + + L I
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 39.6 bits (91), Expect = 5e-05
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 22/177 (12%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+ +VG AGK+++L + T P +G + FT+ D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGI 59
Query: 72 DKIRPLWRHYFQNT-------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+ + + L++V+D+ D + L LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
NK DL + D L + + A +G GL + L + +
Sbjct: 120 LNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALVRSTP 171
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 1e-04
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
++ ++VG A GKT +L V T+ TV K ++D GQ+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
L + T + + ++E L E + L+ + DL +
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128
Query: 134 MNAAEITDKLGLH--------SLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
+ + L + A + +GL D I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 2e-04
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 8/153 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
E+++ + G GK+ ++ + E T+ + + T++ + +S + D GQ+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ + +G + V D DR E + + + ++ L++ NK DL +
Sbjct: 62 DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
+ ++ + G + A +GEG
Sbjct: 121 SRQ---VSTEEGEKLATELACAFYECSACTGEG 150
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Score = 37.4 bits (86), Expect = 3e-04
Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 13/143 (9%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEY--------KNISFTVW 66
+VGL +GKTT KL G + E V
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
D + IR + + +VD+ R ++ E L E D VLLV
Sbjct: 73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 132
Query: 127 KQDLPNAMNAAEITDKLGLHSLR 149
A +K+G+ L
Sbjct: 133 MTGQEALSVARAFDEKVGVTGLV 155
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.5 bits (83), Expect = 5e-04
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+R+++VG GK+T+L +L + G + + + I F + D G
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF--ANKQDLP 131
+ L + ++ V++A L + R NK D+
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+N EI +KLG ++ A GEGL + + +
Sbjct: 121 EKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESI 156
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.1 bits (79), Expect = 0.002
Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 25/184 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---- 75
I+ G GK+T++Y+L G+ V G + +E + + + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 76 -------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL----HRMLNEDELRD 118
+ L+ + + D
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 119 AVLLVFANKQDLPNAMNAA--EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
+V NK D + + +K + L + A G+ + + +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
Query: 177 IANK 180
I +
Sbjct: 181 IRER 184
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.002
Identities = 16/162 (9%), Positives = 50/162 (30%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
E+R+ ++G +GK++++++ G T + + + + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
+ + +F ++ + + V L + L + + + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + TCAT G + ++ +
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 34.1 bits (77), Expect = 0.004
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 16/175 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEYKNISFTVWDVGGQ 71
+ +VG + GK+T+L + + T +P +G SF + D+ G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMV---ETDDGRSFVMADLPGL 59
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
+ I + + + + + + P
Sbjct: 60 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 132 NAMNAA---EITDKLGLHSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNIANK 180
+ A L + +++ + A + EGL E L ++N + N
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 181 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.98 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.97 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.93 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.91 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.85 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.84 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.78 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.78 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.77 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.6 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.57 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.56 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.53 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.53 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.45 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.08 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.99 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.93 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.92 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.81 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.37 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.31 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.28 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.27 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.22 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.19 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.15 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.03 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.89 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.87 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.79 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.79 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.76 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.75 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.72 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.71 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.67 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.65 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.65 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.65 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.55 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.51 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.51 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.49 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.48 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.46 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.43 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.43 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.42 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.41 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.39 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.37 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.36 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.35 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.35 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.34 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.34 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.32 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.31 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.3 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.29 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.29 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.29 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.25 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.25 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.23 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.23 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.22 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.18 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.18 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.17 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.15 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.15 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.14 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.13 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.12 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.12 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.11 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.09 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.07 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.02 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.99 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.99 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.98 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.97 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.97 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.96 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.95 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.94 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.93 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.89 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.88 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.86 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.86 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.84 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.74 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.61 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.53 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.51 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.49 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.48 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.45 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.44 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.4 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.29 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.28 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.15 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.13 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.12 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.09 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.04 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.03 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.96 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.88 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.87 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.79 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.73 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.7 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.69 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.64 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.42 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.39 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.33 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.33 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.3 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.22 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.17 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.12 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.12 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 94.93 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.91 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.85 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.84 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.67 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.66 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.62 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.6 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.48 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.46 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.31 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.07 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.03 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.01 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.51 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.43 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.34 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.3 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.94 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.02 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.63 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.42 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.13 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 90.98 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.11 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.02 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.75 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 89.6 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.17 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 89.12 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.02 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.95 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.55 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 88.47 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 87.18 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.94 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.74 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.38 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 85.04 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.52 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 83.9 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 83.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 82.29 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 80.9 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=2.7e-39 Score=221.99 Aligned_cols=179 Identities=56% Similarity=0.992 Sum_probs=159.7
Q ss_pred cchHHHHHHhh-hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 2 GLSFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
|.-|++++++. ..++.+||+++|++|||||||++++.++.+....||.+........+++.+.+||++|++.++..+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 44577888775 55577999999999999999999999999888889999999889999999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
++++++++++|+|++++.++.....++.+.+......+.|+++++||+|+.+....+++.+.++...+...++++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 99999999999999999999999999999888877788999999999999988888899998888888888899999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
++|+||+++|++|++.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999988754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=2.6e-38 Score=215.42 Aligned_cols=171 Identities=71% Similarity=1.253 Sum_probs=157.9
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCcc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
+.+++.+.++.+||+++|++|+|||||++++..+.+....+|.+..........+.+.+||+||++.++..+..+++.++
T Consensus 2 ~~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (173)
T d1e0sa_ 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 81 (173)
T ss_dssp HHHHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred hhhhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccc
Confidence 34566667889999999999999999999999999888888999998888889999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++++|+|+++.+++.....++...+........|+++++||+|+.+.....++...+++..+...++++++|||++|+||
T Consensus 82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred eEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence 99999999999999999999999888777778999999999999988888889998888888888899999999999999
Q ss_pred HHHHHHHHHHh
Q 030187 167 YEGLDWLSNNI 177 (181)
Q Consensus 167 ~~~~~~l~~~l 177 (181)
+|+|++|.+.+
T Consensus 162 ~e~~~~l~~~~ 172 (173)
T d1e0sa_ 162 YEGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=3.5e-38 Score=213.18 Aligned_cols=165 Identities=48% Similarity=0.902 Sum_probs=152.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+.+||+++|++|+|||||+++|.+..+....||.+.....+...++.+.+||++|++.++..+..+++.++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46899999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+..++.....+|.+.+.+....++|+++|+||+|+.+.....+....+....+...++++++|||++|+|++++|++|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999888777788999999999999887777888777777777777889999999999999999999999
Q ss_pred Hhhcc
Q 030187 176 NIANK 180 (181)
Q Consensus 176 ~l~~~ 180 (181)
++.+|
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 98875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=8.7e-38 Score=213.29 Aligned_cols=166 Identities=48% Similarity=0.846 Sum_probs=152.0
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
...++.+||+++|++|+|||||+++|.++.+....++.+++...+..+++.+.+||++|++.++..+..+++.+|++++|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 34557799999999999999999999999998888888988888999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||++++.++.....++.+........++|+++++||+|+.+......+.+.+........++++++|||++|+|++|+|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988887778899999999999998888888888877777777788999999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
+|++.+
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=8.5e-37 Score=206.20 Aligned_cols=161 Identities=30% Similarity=0.680 Sum_probs=149.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
.+||+++|++|+|||||+++|..+.+. ...||.+.+...++..++.+++||+||++.+...+..++.+++++++|||++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 81 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence 479999999999999999999988875 4678999999989999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+++++.....++..++.....++.|+++|+||.|+.+.....++.+.++...+...+++++++||++|.|++++|++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence 99999999999999998877789999999999999888888888888888888888899999999999999999999988
Q ss_pred Hh
Q 030187 176 NI 177 (181)
Q Consensus 176 ~l 177 (181)
.+
T Consensus 162 ~~ 163 (164)
T d1zd9a1 162 HS 163 (164)
T ss_dssp TC
T ss_pred cc
Confidence 64
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=205.59 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=113.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
|||+++|++|+|||||++++.+..+....++....+. .+.. ..+.+.+||++|+++++.++..+++++|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 7999999999999999999998877655555554442 3333 358899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
+++++++.+..|+.++........+|+++|+||+|+.+.. ...+.. .+ .+..+++|++|||++|.||+++|+.
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-AC----AVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHH-HH----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 9999999999999888766555778999999999987642 222221 11 1223457999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|++.+..|
T Consensus 157 l~~~i~~~ 164 (168)
T d2gjsa1 157 VVRQIRLR 164 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=4.3e-34 Score=194.82 Aligned_cols=176 Identities=48% Similarity=0.897 Sum_probs=156.7
Q ss_pred cchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccc
Q 030187 2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
|..|+++. +.+.++.+||+++|.+|||||||++++.++++....++.+.....+...+..+.+||+++++.....+..+
T Consensus 1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 79 (177)
T d1zj6a1 1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79 (177)
T ss_dssp CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence 56788888 78889999999999999999999999999998888888888888888889999999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+..++++++++|.++.+++.....++............|+++|+||+|+......+++...+....+...+++++++||+
T Consensus 80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 159 (177)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence 99999999999999999999988888888777777899999999999999888888888888877777788999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030187 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~ 178 (181)
+|+|++|++++|.++|.
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998863
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-36 Score=203.66 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=128.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccc-cCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+..+.+||+++|++|+|||||++++..+.+... .+|.... ...+..+ .+.+.+||++|++++...+..+++++|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 356779999999999999999999998887644 3333322 2233333 47899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++++|..+..|+..+.+.....+.|+++|+||+|+.+.. ..++. ..+. +..+++|++|||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAFG----ASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhh-hHHH----HhcCCEEEEEeCCCCcCH
Confidence 9999999999999999999888776555789999999999986532 22222 1111 123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|+.|++.+.+
T Consensus 157 ~e~f~~l~~~i~k 169 (173)
T d2fn4a1 157 DEAFEQLVRAVRK 169 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-35 Score=198.76 Aligned_cols=156 Identities=22% Similarity=0.364 Sum_probs=126.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
++||+++|++|+|||||++++..+.+. ...||++.++..... ..+.+.+||++|++.+...++.++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 589999999999999999999988865 456788876655443 458999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||+++++||+.+..|+....+.. +++|+++|+||+|+.......+.. ..+...+++|++|||++|.||+++|.
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 579999999999997654332211 12223456899999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
+|++.|.+
T Consensus 156 ~l~~~l~~ 163 (170)
T d1i2ma_ 156 WLARKLIG 163 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 99998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4.1e-36 Score=203.58 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=127.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.-+||+++|++|+|||||++++..+++. ...||.+..+.. +.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 3479999999999999999999988865 456777765432 333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++.+..|+.++.+....++.|+++|+||+|+.+. ...++... + ++..+++|++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-R----ADQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECCTTTCTTHHHH
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH-H----HHHcCCeEEEEcCCCCcCHHHH
Confidence 999999999999999988877666678999999999998653 22222221 1 1223457999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|++|++.+.+|
T Consensus 158 f~~l~~~i~~r 168 (168)
T d1u8za_ 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCc
Confidence 99999998775
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-35 Score=200.01 Aligned_cols=158 Identities=20% Similarity=0.391 Sum_probs=125.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+++|++|+|||||++++.++++. ...++.+.+.. .+... .+.+++||+||++++...++.+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999988765 34555555443 33333 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||+++++++.....|+..... ......|+++++||+|+.+.. ..++.. .+ ++..+++|++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~gv~e~ 158 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGR-QL----ADHLGFEFFEASAKDNINVKQT 158 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhH-HH----HHHcCCEEEEecCCCCcCHHHH
Confidence 999999999999988876543 334688999999999987642 222222 11 1223457999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|++|++.|.+|
T Consensus 159 f~~l~~~i~ek 169 (169)
T d3raba_ 159 FERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhC
Confidence 99999999876
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=8.1e-34 Score=190.20 Aligned_cols=160 Identities=93% Similarity=1.424 Sum_probs=145.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|++|||||||+++|.++++....++........+...+.+.+||++|...+...+..++.+++++++++|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999998887666666666677778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+++.....++.+..........|+++++||.|+.+.....++........++..++++++|||++|+||+++|++|.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999999888878899999999999999888888888777777777889999999999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=195.38 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=130.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEE-E--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV-E--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~-~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.+||+++|++|+|||||++++..+.+.. ..||++..+... . ...+.+.+||++|++.+...++.+++++|++++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 467999999999999999999999998764 456666544322 2 245889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||+++++||+++..|+..+.+....++.|+++|+||+|+.... ..++... +.. +..+++|++|||++|.||++
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~-~~~---~~~~~~~~e~Sak~g~gv~e 156 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LAR---QWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH---HTTSCEEEECBTTTTBSHHH
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHH-HHH---HhCCCEEEEEcCCCCcCHHH
Confidence 99999999999999999988776655789999999999987642 2222211 111 11345899999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|+++|.+
T Consensus 157 ~F~~l~~~i~k 167 (167)
T d1c1ya_ 157 IFYDLVRQINR 167 (167)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 99999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=198.69 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=128.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.+||+++|++|+|||||+++|.++.+.. ..||.+..+. .+.. ..+.+.+||++|.+++..++..+++++|++++|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 82 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence 45899999999999999999999888664 4677776643 2333 347889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|..+..|+.++......+++|+++|+||+|+... ...++..+ + ++..+++|++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~-~----a~~~~~~~~e~Sak~~~~v~~~ 157 (167)
T d1xtqa1 83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-L----AESWNAAFLESSAKENQTAVDV 157 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHH-H----HHHcCCEEEEEecCCCCCHHHH
Confidence 999999999999999988877666678999999999998653 22333221 1 1223457999999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+.|+..+.
T Consensus 158 f~~li~~~~ 166 (167)
T d1xtqa1 158 FRRIILEAE 166 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-35 Score=198.66 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=128.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..+||+++|++|+|||||++++.++.+. ...||.+..+.. +.. ..+.+.+||++|++++...++.+++++|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 4689999999999999999999988865 445666544322 233 348899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCC-CHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~ 168 (181)
||+++++||.++..|+.++.+.....+.|+++++||+|+.... ..++..+ + ++..+++|++|||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-~----~~~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBSHHH
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-H----HHHcCCEEEEEcCCCCCcCHHH
Confidence 9999999999999999988776555789999999999987642 2222211 1 11223469999999875 9999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|..|++.+.+|
T Consensus 158 ~F~~l~~~i~~~ 169 (169)
T d1x1ra1 158 TFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-34 Score=195.68 Aligned_cols=162 Identities=17% Similarity=0.262 Sum_probs=125.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+.||+++|++|+|||||++++..+.+.. ..||.+..... ... ..+.+.+||++|++.+...++.+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4699999999999999999999988764 45666544322 222 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCc-ceEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~Sa~~ 162 (181)
|+++++||++...||.+...... ++.|+++++||+|+.+.....+........ .++.. ..+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999998888777543 689999999999987642221111111100 00111 24799999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.||+++|+.+++.+.+
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999987753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-35 Score=200.48 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=126.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEE-EE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.+||+++|++|+|||||++++.++.+. ...||++..+... .. ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 3589999999999999999999998875 4467777654332 22 347889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
||+++++++..+..|+..+.... ...++|+++|+||+|+... ...++.. .+ ++..+++|++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~-~~----~~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-AL----ARTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHH-HH----HHHcCCeEEEEcCCCCcCHHH
Confidence 99999999999999988776532 3367899999999998643 2222221 11 122345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+.|++.+.+|
T Consensus 156 ~f~~l~~~~~~~ 167 (171)
T d2erxa1 156 LFQELLNLEKRR 167 (171)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHHHh
Confidence 999999988776
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-34 Score=196.98 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=127.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.+..+||+++|++|+|||||+++|..+.+.. ..||++..... +.. ..+.+.+||++|++.+...+..+++++|++
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ 84 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 84 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence 45667999999999999999999999988653 45666543332 222 348899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCc-ceEEEEe
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQR-HWYIQST 158 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~ 158 (181)
++|||+++++||++...||.+..+.. .++.|+++|+||+|+.+............. ..++.. .+.|+||
T Consensus 85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~ 163 (185)
T d2atxa1 85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163 (185)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999998888887754 368999999999998753211111100000 000111 2468999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.||+++|+.+++++..
T Consensus 164 SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 164 SALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHcC
Confidence 999999999999999988754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-35 Score=197.19 Aligned_cols=158 Identities=20% Similarity=0.339 Sum_probs=119.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++..+.+.. ..||.+........ ..+.+.+||++|++++...++.+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 35899999999999999999999988764 56666655544332 24889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||+++++||+.+..|+...... .....|+++++||+|+.+. ...++..+ + ++..+++|++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-~----a~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES-Y----AESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHH-H----HHHcCCeEEEEecCCCcCHHH
Confidence 99999999999999988775443 2357899999999998653 22333222 1 222345799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|..|++.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-35 Score=198.49 Aligned_cols=156 Identities=19% Similarity=0.336 Sum_probs=125.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE--Ec--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||+++|..+++. ...||++....... .. .+.+.+||++|++++...+..++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 479999999999999999999988765 45677776554433 33 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|+.+..|+.++.... +++|+++|+||+|+.+.. ..++.. .+ ++..+++|++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE-GL----AKRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH-HH----HHHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhH-HH----HHHcCCEEEEeccCCCcCHHHH
Confidence 99999999999998887765432 478999999999986532 222221 11 1223457999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+.|++.+.+
T Consensus 155 f~~l~~~~lq 164 (164)
T d1z2aa1 155 FKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-34 Score=194.63 Aligned_cols=155 Identities=18% Similarity=0.373 Sum_probs=125.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
|||+++|++|+|||||++++.++++. ...++.+........ ..+.+.+||++|++++...+..+++.++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 69999999999999999999988865 445666665543332 3488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++.++..+..|+.+...... ++.|+++|+||+|+.+.. ..++.. .+. +..+++|++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE-RKA----KELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHH-HHH----HHcCCEEEEecCCCCcCHHHHH
Confidence 99999999999999988765433 689999999999986532 222221 111 2234579999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
++|+++|.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999874
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-34 Score=194.83 Aligned_cols=158 Identities=21% Similarity=0.348 Sum_probs=126.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEE--Ec--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.+||+++|++|+|||||+++|..+++.. ..+|.+....... .. ...+.+||++|++++...+..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 567999999999999999999999988764 4566666554332 22 367889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++|+.+..|+...... ..+..|+++|+||+|+.+. ...++..+ + ++..+++|++|||++|.||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-Y----ADSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHH-H----HHHcCCEEEEEecCCCCCHH
Confidence 999999999999999988776543 3368999999999998653 22222221 1 12234579999999999999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
++|..|+++|.
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=199.22 Aligned_cols=159 Identities=17% Similarity=0.268 Sum_probs=126.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.+||+++|++|+|||||++++.++.+.. ..+|++..+. .... ..+.+.+||++|++.+...+..+++++|++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 467999999999999999999999988654 4455553322 2222 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|..+..|+.++......+++|+++|+||+|+.+.. ..++.. .+. +..+++|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~e~Sak~g~~i~e 155 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-ALA----EEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHHTSCEEEECTTCHHHHHH
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHH-HHH----HHcCCeEEEECCCCCcCHHH
Confidence 99999999999999999888776556789999999999986532 222211 111 11234689999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
+|+.|+++|.
T Consensus 156 ~f~~i~~~i~ 165 (167)
T d1kaoa_ 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-34 Score=195.37 Aligned_cols=158 Identities=20% Similarity=0.363 Sum_probs=127.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE--E--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+++|..+++. ...+|.+....... . ..+.+.+||++|++++...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 4589999999999999999999988875 44667776654433 2 24889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|.++++++.....|+..+.+. ..++.|+++|+||+|+.+.. ..++. ..+. +..+++|++|||++|.||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~-~~~~----~~~~~~~~e~SAk~g~~V~e 158 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEA-QSYA----DDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH-HHHH----HHTTCEEEECCTTTCTTHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHH-HHHH----HhcCCEEEEeeCCCCCCHHH
Confidence 99999999999999988887553 33689999999999986542 22222 2221 22345899999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|+.|++.|.+
T Consensus 159 ~f~~l~~~i~~ 169 (170)
T d1r2qa_ 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-34 Score=195.76 Aligned_cols=163 Identities=21% Similarity=0.403 Sum_probs=128.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++..+++. ...+|.+.++. .+... .+.+.+||++|++++...++.+++.+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 579999999999999999999998865 45667776543 34443 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||++++++|.....|+....... ....|+++++||+|+.+......+....+...++..+++|++|||++|.||+++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999999987765543 35789999999999865432222211111122233456899999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
.|+++|.-|
T Consensus 162 ~i~~~i~~k 170 (170)
T d1ek0a_ 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHhccC
Confidence 999987643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=196.54 Aligned_cols=157 Identities=19% Similarity=0.353 Sum_probs=123.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++..+.+.. ..++.+..+ ..+... .+.+.+||++|++++...++.++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 4899999999999999999999888653 344554443 334443 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|++++.++.....|+..+.+. .....|+++|+||+|+.+.. ..++. ..+ .+..++++++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~-~~~----~~~~~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRA-EEF----SEAQDMYYLETSAKESDNVEKL 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCCEEECCTTTCTTHHHH
T ss_pred eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHH-HHH----HHhCCCEEEEEccCCCCCHHHH
Confidence 9999999999999998877654 33578999999999986532 22222 111 1223446899999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..|++.+..
T Consensus 159 f~~l~~~l~~ 168 (171)
T d2ew1a1 159 FLDLACRLIS 168 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-34 Score=195.91 Aligned_cols=159 Identities=19% Similarity=0.287 Sum_probs=124.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.+||+++|++|+|||||++++..+.+.. ..||.+.... .+.. ..+.+.+||++|++++...++.+++.+|++++|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence 45899999999999999999999888653 4566553332 2333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||+++++||+.+..|+.++.........|+++|+||+|+.+. ...++.. .+ ++..+++|++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~i~e~ 158 (171)
T d2erya1 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ-QL----ARQLKVTYMEASAKIRMNVDQA 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHHH
T ss_pred eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH-HH----HHHcCCEEEEEcCCCCcCHHHH
Confidence 999999999999999988877666678999999999998754 2222222 11 1223457999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..|++.+.+
T Consensus 159 f~~l~~~i~k 168 (171)
T d2erya1 159 FHELVRVIRK 168 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=195.23 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=125.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.+||+++|++|+|||||++++..+.+. ...||++..... ... ..+.+.+||++|++++...+..+++++|++++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 80 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 80 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence 35689999999999999999999998875 445777654432 222 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCccc-CcceEEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLR-QRHWYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~Sa 160 (181)
|||+++++||+++..||....... .++.|+++|+||+|+.+.....+...... ...+. ..+++|++|||
T Consensus 81 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 159 (191)
T d2ngra_ 81 CFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159 (191)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred ccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence 999999999999998888876653 36899999999999864311111000000 00000 12246999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
++|.||+++|+.+++.+.++
T Consensus 160 k~~~~V~e~f~~l~~~~~~~ 179 (191)
T d2ngra_ 160 LTQKGLKNVFDEAILAALEP 179 (191)
T ss_dssp TTCTTHHHHHHHHHHHHTSC
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999877643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-34 Score=192.25 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=129.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEE-EE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.+||+++|++|+|||||+++|.++.+.. ..++.+..+... .. ..+.+.+||++|++.+...++.+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 45899999999999999999999988765 355666544322 22 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|++++.+|+.+..|+..+......+++|+++|+||+|+.......+..+.+. +..+++|++|||++|.||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999988877766557899999999999876543232222222 12345699999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
.|++.|.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-34 Score=192.93 Aligned_cols=155 Identities=21% Similarity=0.365 Sum_probs=122.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.++.+... .++..... ..+..+ .+.+.+||++|++++...+..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 48999999999999999999998876543 33444333 333333 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++....|+..... ......|+++++||+|+.... ..++... + ++..+++|++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQ-F----AEENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHHH
T ss_pred eccCchHHHHHHHHHHHHHHh-hccccceEEEEcccccchhhcccHHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999998877654 344689999999999985532 2222211 1 1223457999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
|+.|++.|
T Consensus 158 f~~i~~~i 165 (166)
T d1z0fa1 158 FLEAAKKI 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=194.34 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=122.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEE-EE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++..+.+. ...||++..+... .. ..+.+.+||++|++.+. ....++++++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 479999999999999999999998865 4567877765432 22 34889999999998875 4567889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC-HHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG-LYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~ 169 (181)
|++++++|..+..|+.........++.|+++|+||+|+.+. ...++..+ + ++..+++|++|||++|.| |+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-H----HHHhCCeEEEEccccCCcCHHHH
Confidence 99999999999987665544444468999999999998653 22222211 1 112345799999999984 9999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|..|++.+.+|
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=198.67 Aligned_cols=159 Identities=22% Similarity=0.440 Sum_probs=125.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE------------cCEEEEEEEcCCCCCcccccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY------------KNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~------------~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
.+||+++|++|+|||||+++|.++++.. ..++.+..+. .+.. ..+++.+||++|+++++.++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 4899999999999999999999887653 3334333322 2211 23679999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++++|++++|||++++++++.+..|+.++........+|+++|+||+|+.... ..++.. .+ ++..+++|++||
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~-~~----~~~~~~~~~e~S 159 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR-EL----ADKYGIPYFETS 159 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCCEEEEB
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH-HH----HHHcCCEEEEEe
Confidence 99999999999999999999999998887777666789999999999986542 222221 11 122335689999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.||+++|++|++.+.+|
T Consensus 160 ak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 160 AATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-34 Score=194.56 Aligned_cols=159 Identities=21% Similarity=0.353 Sum_probs=122.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce--eEEEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+|+|++|+|||||++++.++++.. ..++... ....... ..+.+.+||++|++.+...++.+++++|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999887653 2333332 2222333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
||++++++|..+..|+..+... ..+++|+++|+||+|+.... ...+....+. +..+++|++|||++|.||+++|
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a----~~~~~~~~e~Sa~tg~~V~e~f 157 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA----REHGLIFMETSAKTACNVEEAF 157 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHHTCEEEEECTTTCTTHHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHH----HHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999887553 33689999999999976532 1111111111 2234579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
..|++.+.+|
T Consensus 158 ~~i~~~i~~~ 167 (173)
T d2a5ja1 158 INTAKEIYRK 167 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-34 Score=193.79 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=126.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEE--E--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++..+++.. ..+|......... . ....+.+||++|++++...+..++++++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 4799999999999999999999887653 4555555544322 2 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
||+++++++..+..|+..+..... +++|+++++||+|+...... .+....+ +...+++|++|||++|.|++++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e~f 159 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEAF 159 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred EecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHHHH
Confidence 999999999999999988766433 68999999999997543221 1221222 12235689999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+++++.+.++
T Consensus 160 ~~l~~~i~~~ 169 (174)
T d2bmea1 160 VQCARKILNK 169 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-33 Score=188.88 Aligned_cols=160 Identities=24% Similarity=0.408 Sum_probs=125.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+++|++|+|||||++++..+.+. ...+|.+.++. .+.. ..+.+.+||+||++.+...++.++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999998865 34566665543 3433 347888999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||++++++++.+..++....... ....|++++++|.|........+..+.+.. ..++++++|||++|.||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHH
Confidence 99999999999988877665543 357899999999998776544443333322 2345799999999999999999
Q ss_pred HHHHHhhccC
Q 030187 172 WLSNNIANKA 181 (181)
Q Consensus 172 ~l~~~l~~~~ 181 (181)
+|++.+.+|+
T Consensus 157 ~l~~~i~~k~ 166 (166)
T d1g16a_ 157 TLAKLIQEKI 166 (166)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999999885
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-33 Score=193.78 Aligned_cols=158 Identities=21% Similarity=0.368 Sum_probs=125.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+||+|+|++|+|||||++++..+.+. ...+|.+.... .+.. ..+.+.+||++|++++..+++.++++++++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3489999999999999999999988765 44566665543 3333 45889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||+++++++.....++..+.+. .....|+++++||+|+.+.. ..++..... ...++.|+++||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 99999999999999988776543 33689999999999987642 222221111 11234689999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|+.|++.+.+
T Consensus 159 ~f~~l~~~i~~ 169 (194)
T d2bcgy1 159 AFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=190.08 Aligned_cols=158 Identities=18% Similarity=0.399 Sum_probs=117.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc--ccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+||+++|++++|||||++++..+++.. ..++.+.+... +... .+.+++|||+|++++...+..+++++|+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence 35899999999999999999999887642 34455555443 3333 378899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++.....++........ ...|+++++||+|...... .++... + .+..+++|++|||++|.||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-L----AKEYGLPFMETSAKTGLNVD 158 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-H----HHHHTCCEEECCTTTCTTHH
T ss_pred EEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHH-H----HHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999887766543 5789999999999877522 222211 1 12234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|++.|.+
T Consensus 159 e~f~~l~~~i~k 170 (170)
T d2g6ba1 159 LAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 999999998753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-33 Score=190.51 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=125.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.+||+++|++|+|||||+++|..+.+. ...||++.... .+.. ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeee
Confidence 4689999999999999999999998865 44566664432 2333 347889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCC--------ccc-CcceEEEEeccc
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLH--------SLR-QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~--------~~~-~~~~~~~~~Sa~ 161 (181)
||++++++|+++..||....+.. ..+.|+++|+||+|+.......+. ....... .++ ...++|+||||+
T Consensus 84 ~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk 162 (183)
T d1mh1a_ 84 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (183)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred eccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence 99999999999988777776653 357899999999998654211111 1111000 001 122589999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.||+++|+.|++.+..
T Consensus 163 ~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 163 TQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHcC
Confidence 999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.8e-34 Score=192.61 Aligned_cols=160 Identities=23% Similarity=0.401 Sum_probs=99.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+-+||+++|++|+|||||+++|.++.+. ...+|++... ..+..+ .+.+.+||+||++.+...++.+++.+|++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 3479999999999999999999988764 3345555443 344444 4788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|||++++.++..+..|+..+.. ....+.|+++|+||.|....... .+..... ....+++|++|||++|.||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~gv~e~ 159 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKL----ALDYGIKFMETSAKANINVENA 159 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHH----HHHHTCEEEECCC---CCHHHH
T ss_pred EEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHH----HHhcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999998877643 34467999999999998764322 1111111 1234568999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|++|++.|.+|
T Consensus 160 f~~l~~~i~~k 170 (173)
T d2fu5c1 160 FFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-32 Score=187.88 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++||+++|++|+|||||++++..+.+.. ..||++.... .+.. ..+.+++||++|++.+...++.+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4699999999999999999999998764 4566553332 2222 4488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHh---HHHhhhCCCcccCcceEE
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA---EITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~ 155 (181)
|+++++||+....||........ +++|+++||||+|+.... ..+ .+.+..+ ..+|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-------~~~y 153 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATY 153 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEE
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-------CCeE
Confidence 99999999999998888766543 589999999999986421 111 1222222 1379
Q ss_pred EEecccCCC-CHHHHHHHHHHHhhcc
Q 030187 156 QSTCATSGE-GLYEGLDWLSNNIANK 180 (181)
Q Consensus 156 ~~~Sa~~~~-~v~~~~~~l~~~l~~~ 180 (181)
+||||++|. |++++|+.+++.+.+|
T Consensus 154 ~E~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 154 IECSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence 999999998 5999999999998875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-32 Score=186.56 Aligned_cols=157 Identities=18% Similarity=0.344 Sum_probs=122.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce--eEEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+++|++|+|||||++++.++.+.. ..++.+. ....+..+ .+.+.+||++|++++...+..+++.++++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 4799999999999999999999887653 3333333 33444444 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||.++++||.....|+..+.... .+++|+++|+||+|+.+.. ..+.. .... ...+.++++|||++|.|++++
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEA-RAFA----EKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHH-HHhh----cccCceEEEEecCCCcCHHHH
Confidence 99999999999999988775543 3679999999999987542 22221 1111 123357999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+.+++.+.+
T Consensus 158 f~~l~~~i~~ 167 (175)
T d2f9la1 158 FKNILTEIYR 167 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=8.5e-31 Score=176.65 Aligned_cols=165 Identities=58% Similarity=1.020 Sum_probs=151.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+.+||+++|++|+|||||++++.++++....++.+........+.+.+.+||.+|...+...+...+..++++++++|+.
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 83 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence 35899999999999999999999999988888888888888889999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+..++.....++............|+++++||.|+.+.....++...+....+...+++|++|||++|.||+++|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999998888887777778999999999999998888888888877777778899999999999999999999999
Q ss_pred Hhhcc
Q 030187 176 NIANK 180 (181)
Q Consensus 176 ~l~~~ 180 (181)
.+.+|
T Consensus 164 ~l~~k 168 (169)
T d1upta_ 164 TLKSR 168 (169)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-32 Score=183.98 Aligned_cols=159 Identities=24% Similarity=0.401 Sum_probs=127.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||+++|.++++.. ..++.+... ..+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 86 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 86 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999888653 334444333 23444 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||+++++++.....|+.++.........|+++++||.|........+....+ .+..++++++|||++|.||+++|+
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~tg~gv~e~f~ 162 (177)
T d1x3sa1 87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFE 162 (177)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHH----HHHCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988776666789999999999987643222222222 112345799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
+|++++.+
T Consensus 163 ~l~~~l~~ 170 (177)
T d1x3sa1 163 ELVEKIIQ 170 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 99998765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.9e-32 Score=184.38 Aligned_cols=157 Identities=17% Similarity=0.309 Sum_probs=111.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEE-----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
-+||+++|++|+|||||+++|.++++.. ..+|.+........ ..+.+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999887653 34454443333222 34779999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCC---CCHh---HHHhhhCCCcccCcceEEEEeccc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNA---MNAA---EITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
|||++++.+|..+..|+.++... ...+++|+++++||+|+.+. ...+ ++.+.++ .++|++|||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~ 154 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAK 154 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTT
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC-------CCeEEEEeCC
Confidence 99999999999999888776542 33357899999999998753 1222 2222222 2368999999
Q ss_pred CCCCHHHHHHHHHHHhhcc
Q 030187 162 SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~~ 180 (181)
+|.||+++|++|++.+.++
T Consensus 155 ~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 155 NAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 9999999999999877653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.1e-33 Score=189.35 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=119.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeE--EEEEE--cCEEEEEEEcCCC---CCccccccccccCcc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEY--KNISFTVWDVGGQ---DKIRPLWRHYFQNTQ 86 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~---~~~~~~~~~~~~~~d 86 (181)
..|||+++|++|+|||||++++.+..+. ...+|.+... ..+.. ..+.+.+||+++. +++ .+..+++++|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 3589999999999999999999877643 3344544433 23333 3467889998754 433 4667889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|||+++++++.++..|+.++......+++|+++|+||+|+.+. ...++. +.+ +...+++|++|||++|.
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~Sak~g~ 154 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQH 154 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTB
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHH----HHHcCCeEEEEeCCCCc
Confidence 99999999999999999999988877766678999999999998653 222222 112 12234679999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
||+++|+.|++.+..|
T Consensus 155 ~i~~~f~~l~~~i~~r 170 (172)
T d2g3ya1 155 NVKELFEGIVRQVRLR 170 (172)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999999988643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=1.1e-31 Score=184.12 Aligned_cols=159 Identities=17% Similarity=0.284 Sum_probs=126.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+|+|.+|+|||||++++.++++. ...+|.+.+...... ..+.+.+||++|+..+...+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 69999999999999999999998865 456677776654443 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|.+++.++..+..|+.++... ....++|+++|+||+|+.+.....+....+.. ...+++|++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHH
Confidence 999999999998887666443 33456899999999998775433322222211 122457899999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|++|++.+.+
T Consensus 160 f~~l~~~i~~ 169 (184)
T d1vg8a_ 160 FQTIARNALK 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-31 Score=181.83 Aligned_cols=160 Identities=14% Similarity=0.294 Sum_probs=122.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+||+|+|++|+|||||++++..+.+.. ..+|++..... .... .+.+.+||++|+.+....+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 45799999999999999999999887653 44455554332 2222 4788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|.+++.+++.+..|+.++.. ....++.|+++|+||+|+.+.. ..++.. .+... ...++|++|||++|.||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~-~~~~~---~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCRD---NGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHHH---TTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHH-HHHHH---cCCCeEEEEcCCCCcCH
Confidence 9999999999999888766543 3444678999999999997643 222322 22111 12346899999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|++.+..
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-31 Score=180.11 Aligned_cols=155 Identities=13% Similarity=0.179 Sum_probs=117.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
..+||+++|++|+|||||++++.++.+....++....+.. +.. ..+.+.+||++|+..+. +++.+|++|+||
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVf 78 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVF 78 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEe
Confidence 4689999999999999999999999887666665555432 333 34889999999988653 678899999999
Q ss_pred ECCCcccHHHHHHHHHHHh--cCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 93 DSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~--~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
|+++++||+.+..|+..+. .......+|+++|+||.|+.... ...+... +. .+..+++|++|||++|.||
T Consensus 79 d~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~-~~---~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 79 SLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-LC---ADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHH-HH---HTSTTEEEEEEBTTTTBTH
T ss_pred ecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHH-HH---HHhCCCeEEEeCCCCCcCH
Confidence 9999999999988877653 23334678999999999975422 1222211 11 1124568999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|..+++.+.+
T Consensus 155 ~~~F~~l~~~i~~ 167 (175)
T d2bmja1 155 DRVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-29 Score=170.31 Aligned_cols=157 Identities=39% Similarity=0.640 Sum_probs=140.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++|+|||||+|+|.++.+....||.+.........+....+||++|...+...+..++..++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 79999999999999999999999888889999988888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-------cCcceEEEEecccCCCCHHHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
++.....++..........+.|+++++||.|+.......++...+..... ...++.+++|||++|+|++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 99999999888888777788999999999999887777777766654332 23567899999999999999999
Q ss_pred HHHH
Q 030187 172 WLSN 175 (181)
Q Consensus 172 ~l~~ 175 (181)
+|.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.3e-31 Score=180.61 Aligned_cols=153 Identities=22% Similarity=0.365 Sum_probs=117.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccc-cccccccCccEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 89 (181)
+-+||+++|++|+|||||++++..+++.. ..++.+.... .... ....+.+||++|...+.. .++.+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 35899999999999999999999888653 3444444332 2222 457889999999887654 4678899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccC---CC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATS---GE 164 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~ 164 (181)
+|||++++++|+.+..|+.++.+....+++|+++|+||+|+.+. ...++..+ +. +..+++|++|||++ ++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FA----DTHSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEEECCSSSGGGGS
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-HH----HHCCCEEEEEecccCCcCc
Confidence 99999999999999999998877666678999999999998654 22232211 11 12344689999987 56
Q ss_pred CHHHHHHHH
Q 030187 165 GLYEGLDWL 173 (181)
Q Consensus 165 ~v~~~~~~l 173 (181)
||+++|+.|
T Consensus 156 ~V~e~F~~l 164 (165)
T d1z06a1 156 HVEAIFMTL 164 (165)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 999999886
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.97 E-value=6.4e-29 Score=169.78 Aligned_cols=164 Identities=29% Similarity=0.605 Sum_probs=134.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.++..||+++|++|||||||+++|.++.+....++.+.+...+...+..+..||+.++..+...+..+.+..+++++++|
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 89 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 89 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeee
Confidence 36779999999999999999999999988877788888888888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEeccc
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCAT 161 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~ 161 (181)
+++...+......+..........+.|+++++||.|+.......++...+... .....++++++|||+
T Consensus 90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 169 (186)
T d1f6ba_ 90 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred ccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCC
Confidence 99999999998888888877777899999999999998877766666555422 123356789999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030187 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l 177 (181)
+|+|++|+|++|.+.+
T Consensus 170 tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 170 KRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTBSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999999875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3e-29 Score=173.56 Aligned_cols=163 Identities=24% Similarity=0.441 Sum_probs=132.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+.+||+++|+.|||||||++++..+.+ ...||++++...+....+.+++||++|++.++..|..+++.++++++++|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 468999999999999999999988877 4679999999999999999999999999999999999999999999999987
Q ss_pred Ccc----------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhHH-----Hhh
Q 030187 96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAEI-----TDK 142 (181)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------------~~~~~~-----~~~ 142 (181)
+.+ .+.+....|..++......+.|+++++||.|+... ...... ...
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 653 45666777888888777789999999999997421 011111 112
Q ss_pred hCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
........+.+.+++|||++|.||+++|+.+.+.|.+
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence 2233334566788999999999999999999988875
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=9.2e-28 Score=165.35 Aligned_cols=161 Identities=27% Similarity=0.457 Sum_probs=127.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+.+||+++|+.|+|||||+++|....+ ||.++....+....+.+++||++|+++++..+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 358999999999999999999976543 5667777788889999999999999999999999999999999999998
Q ss_pred CcccH----------HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----------------CCHhHHH----hhh-
Q 030187 96 DRDRV----------VEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEIT----DKL- 143 (181)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----------------~~~~~~~----~~~- 143 (181)
+.+++ .+...+|..++........|+++++||.|+... ....+.. ..+
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 77654 455667888888777789999999999986321 1111111 111
Q ss_pred CC-CcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 144 GL-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 144 ~~-~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.. .....+++++++|||++|.||+++|+.+.+.|.++
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 11 11234567888999999999999999999988754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.3e-27 Score=164.13 Aligned_cols=162 Identities=26% Similarity=0.429 Sum_probs=121.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+-+||+++|++|||||||++++. ......||+|+....++.+...+++||++|++.++..+..++++++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 35899999999999999999993 2346788999999999999999999999999999999999999999999999987
Q ss_pred Ccc----------cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhHHH----hhh
Q 030187 96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAEIT----DKL 143 (181)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------------~~~~~~~----~~~ 143 (181)
+.. ++.....++..++......+.|+++++||+|+... ....... ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 643 46777788888888887789999999999997431 1111111 111
Q ss_pred C--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 144 G--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 144 ~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
. ......+.+.+++|||+++.||+++|+.+.+.|.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 1 11122345667789999999999999999887765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.6e-26 Score=157.32 Aligned_cols=155 Identities=16% Similarity=0.057 Sum_probs=108.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccccC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 84 (181)
.-+|+++|.+|+|||||+|+|.+.+... ...|...........+..+.+|||||....... ...++.+
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 3479999999999999999999876421 122444455556678899999999997654333 2345678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
||++++|+|++++.. ....++.+.++... .+.|+++|+||+|+.... ++..+.+... . ....++++||++|.
T Consensus 85 ad~il~v~D~~~~~~--~~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~~-~--~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPT--PEDELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHEL-L--PEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCC--HHHHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHHT-S--TTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhc--ccccchhhheeccc-cchhhhhhhcccccccCH--HHHHHHHHhh-c--ccCceEEEecCCCC
Confidence 999999999976543 33455555555432 478999999999986542 2222211100 0 11256789999999
Q ss_pred CHHHHHHHHHHHhhc
Q 030187 165 GLYEGLDWLSNNIAN 179 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~ 179 (181)
|++++++.|.+.+.+
T Consensus 157 gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 157 QVAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHHTTCCB
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999988753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.8e-26 Score=161.14 Aligned_cols=162 Identities=27% Similarity=0.436 Sum_probs=129.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+..+||+++|+.|||||||++++..+. ..||+|+....+..+++.+++||++|++.++..|..++++++++++|+|.
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~ 80 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS 80 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence 356899999999999999999997554 45899999999999999999999999999999999999999999999998
Q ss_pred CCc----------ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------CCHh---------------------
Q 030187 95 NDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNAA--------------------- 137 (181)
Q Consensus 95 ~~~----------~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~~~~--------------------- 137 (181)
++. .+..+....|..++.+....++|+++++||+|+.+. ....
T Consensus 81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~ 160 (221)
T d1azta2 81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE 160 (221)
T ss_dssp TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred cccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCC
Confidence 743 356677778888888888889999999999997431 1110
Q ss_pred -----H----HHhhh----CCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 138 -----E----ITDKL----GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 138 -----~----~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+ +...+ .......+.+..+.|||.+..+++.+|+.+.+.|.+
T Consensus 161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 0 11111 112222345667889999999999999988777764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.8e-25 Score=147.94 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=107.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~ 85 (181)
+||+++|++|+|||||+|+|.+.... ... .+.......+...+..+.++|++|..+.... ...++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 79999999999999999999977643 222 2333344567778899999999996544322 23556889
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++++|..+.+++.....+....... . .+.|+++|+||+|+...... ..+..+.+++++||++|.|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~-~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARL-P-AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGEG 149 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHS-C-TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCTT
T ss_pred cccceeeccccccchhhhhhhhhhhhhc-c-cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCCC
Confidence 9999999999887766666543333222 2 47899999999997653211 1122356899999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
+++++++|.+.|
T Consensus 150 i~~L~~~l~~~l 161 (161)
T d2gj8a1 150 VDVLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999999865
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=9.3e-26 Score=153.65 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=111.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc----------cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
.+.++|+++|++|+|||||+|+|.+...... ..+.......+...+..+.++|++|+.++.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 4678999999999999999999986432111 112223334456678899999999999999888888899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcccCcceEEEEeccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+|++++|+|+.+....+.. ..+.. +.. .++|+++|+||+|+...+..+. ..+.+........+.+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~~-~~~~~-~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQTG-EHMLI-LDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHHH-HHHHH-HHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhhh-hhhhh-hhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 9999999999865443322 22222 222 4789999999999987543222 11222111122345678899999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|+|++++++.|.+.+.+
T Consensus 158 ~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCc
Confidence 999999999999988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=5.9e-25 Score=148.53 Aligned_cols=152 Identities=19% Similarity=0.166 Sum_probs=100.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~ 85 (181)
+|+++|++|+|||||+|+|.+..... ...|.......+......+.+||++|..... .....++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 69999999999999999999866431 2224444556677788999999999943221 1233446789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|+++++.|..+..... ...+.+.+.. .++|+++|+||+|+.+....+...+..... ...++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~--~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBS
T ss_pred cEEEEeeccccccccc--cccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhcC-----CCCeEEEecCCCCC
Confidence 9999999987554432 2233333332 468999999999986532222112212111 11357899999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
+++++++|.+.|.++
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.6e-24 Score=147.50 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=102.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEEEEEE-cCEEEEEEEcCCCCCcc-------ccccccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ 87 (181)
+|+++|.+|+|||||+|+|.+..... ...|.......... .+..+++||+||..... ......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 59999999999999999998765421 12233333332322 45789999999954321 123345678999
Q ss_pred EEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++++|..... .......++... .....++|+++|+||+|+.+....+++.+.+.. .+.+++.+||++|.|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEEcCCCCC
Confidence 99999986432 222222222221 111235799999999999876555555444433 245688999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
++++++.|.+.+.
T Consensus 156 id~L~~~i~~~l~ 168 (180)
T d1udxa2 156 LPALKEALHALVR 168 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=5.8e-24 Score=141.96 Aligned_cols=146 Identities=23% Similarity=0.274 Sum_probs=107.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--c--cCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~ 84 (181)
+||+++|.+|+|||||+|+|.+.+... . ..+.......+...+..+.+||+||..... ......+.+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 589999999999999999998765321 1 223333445567788999999999942211 112234578
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|++++...+....+. .+ ...++++++||.|..+....+++...++.. .+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~~--~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKILE--RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHH--HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhhh--hc-----ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 99999999999877655443222 11 356799999999999988888877766532 257899999999
Q ss_pred CHHHHHHHHHHH
Q 030187 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~v~~~~~~l~~~ 176 (181)
|+++++++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999988763
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=5.6e-24 Score=145.44 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=103.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCCCcc------------cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIR------------PL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~ 77 (181)
-++.+||+++|++|+|||||+|+|.+.... ... .+.......+...+..+.++|++|..... ..
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 356799999999999999999999987632 111 12233344566778889999999964322 22
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (181)
....++.+|++++|+|+..+.. .....+...+.. .+.|+++++||+|+..... ..++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 3345678999999999975433 222223333332 4789999999999865432 22332222211111123468
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+++||++|.|++++++.|.+.+.
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=3.2e-25 Score=151.37 Aligned_cols=154 Identities=20% Similarity=0.274 Sum_probs=98.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc---------------ccccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------------PLWRH 80 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------------~~~~~ 80 (181)
.|+++|+||+|||||+|+|.+.+.. ...| |... ..+...+ +.+||+||..... .....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc--ceecccCCceeccccccccccccchhhhhhhhh
Confidence 6899999999999999999987642 2222 3332 3344454 6789999942111 11234
Q ss_pred cccCccEEEEEEECCCcccHHHHH---------HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCccc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEAR---------DELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLR 149 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~ 149 (181)
..+.+|++++|+|+..+....... ..+.+.+.. .++|+++|+||+|+..... ...+...+... ..
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-~~ 153 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LS 153 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GG
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhccc-cc
Confidence 467899999999986432211111 122222222 4789999999999764321 11222333322 22
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.....++++||++|.|++++++.|.+.+.+|
T Consensus 154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 154 EIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 2334577899999999999999999998875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=4.4e-23 Score=143.26 Aligned_cols=157 Identities=27% Similarity=0.379 Sum_probs=111.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE---cCEEEEEEEcCCCCCcc-ccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~ilv~d~ 94 (181)
+|+++|++|+|||||+|+|.++.+....+|.+.+...+.. ..+.+.+||++|++.++ ..+..+++.++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 7999999999999999999998887777777777766654 45889999999999886 4567888999999999999
Q ss_pred CCccc-HHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--------------------------C
Q 030187 95 NDRDR-VVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG--------------------------L 145 (181)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~--------------------------~ 145 (181)
++..+ +.....++.+++... ....+|+++++||+|+......+++.+.+. .
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 88655 345555555554321 224689999999999987655544432210 0
Q ss_pred C--------cccCcceEEEEecccCCCC------HHHHHHHHHH
Q 030187 146 H--------SLRQRHWYIQSTCATSGEG------LYEGLDWLSN 175 (181)
Q Consensus 146 ~--------~~~~~~~~~~~~Sa~~~~~------v~~~~~~l~~ 175 (181)
. .....++.++++|+++|.+ ++++-+||.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 0 0012346789999999887 6666666544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=7.1e-24 Score=146.07 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=105.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEE--E---------------------EEcCEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVET--V---------------------EYKNISFT 64 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~--~---------------------~~~~~~~~ 64 (181)
++..++|+++|+.++|||||+++|.+.... ....|....+.. . ......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 567789999999999999999999763211 111121111111 1 11235689
Q ss_pred EEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HH
Q 030187 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----IT 140 (181)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~ 140 (181)
++|+||+..|.......+..+|++++|+|+.+....+...+.+... ... ..++++++.||+|+.+.....+ +.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~-~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHH-HHh--cCccceeeeecccchhhHHHHHHHHHHH
Confidence 9999999999998888889999999999998653222222222221 111 2346888999999887532222 22
Q ss_pred hhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+.+. .....+++++++||++|+|++++++.+.+.+
T Consensus 159 ~~~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 159 EFIE--GTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 2222 2223456899999999999999999998765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.7e-23 Score=144.16 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=97.2
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCCCcc-------------
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR------------- 75 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 75 (181)
.+...-.+|+++|++|+|||||+|+|.+.+.. ...++.......... ...+.+.|++|.....
T Consensus 18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T d1svia_ 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHH
Confidence 33444459999999999999999999976532 111211111212222 2345567777632211
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
..+......++++++++|+..+.. .....+.+.+.. .++|+++|+||+|+.......+..+.+........+.++
T Consensus 97 ~~~~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (195)
T d1svia_ 97 ETYITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred hhhhccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence 112244566899999999975432 333333344443 468999999999987654444333222211112244578
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+||++|.|+++++++|.+.|.
T Consensus 172 ~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=1.7e-22 Score=142.14 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=101.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeE------------------EEEEEcCEEEEEEEcCCCCCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNV------------------ETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~------------------~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
...|+|+|++++|||||+|+|.+...... ..+..... ..+...+..+.++|||||..|.
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~ 84 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccc
Confidence 34499999999999999999976421100 00110001 1123345689999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHh-----------
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITD----------- 141 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~----------- 141 (181)
......+..+|++|+|+|+.+.-..+ .......+.. .++|+++++||+|+.+..... .+..
T Consensus 85 ~~~~~~~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (227)
T d1g7sa4 85 TLRKRGGALADLAILIVDINEGFKPQ--TQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ 159 (227)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred ccchhcccccceEEEEEecccCcccc--hhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHH
Confidence 98888899999999999997543322 2222222322 578999999999987643110 0000
Q ss_pred -----------hh---CC-------CcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 142 -----------KL---GL-------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 142 -----------~~---~~-------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.+ .. ........+++++||++|.|++++++.|.+..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~ 216 (227)
T d1g7sa4 160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (227)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 00 00011246789999999999999999887654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.88 E-value=4.4e-23 Score=143.12 Aligned_cols=162 Identities=16% Similarity=0.068 Sum_probs=104.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEE----------------------------EEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVET----------------------------VEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~----------------------------~~~~~ 60 (181)
+.+++|+++|+.++|||||+++|.+.... ....+....... .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 45689999999999999999999752210 000000000000 01112
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~ 140 (181)
..+.++|+|||.+|.......+..+|++|+|+|+.+.-.-......+...... ...|+++++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999988888889999999999997642111222222222111 235889999999998753322221
Q ss_pred hhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 141 DKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 141 ~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.... .......+++++++||++|.|++++++.|.+.+..
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 1111 12223445789999999999999999999887654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.88 E-value=9.6e-23 Score=139.97 Aligned_cols=160 Identities=18% Similarity=0.088 Sum_probs=111.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC-----C--c------------ccccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG-----E--I------------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~-----~--~------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+.+++|+++|++++|||||+++|.+. . . .....|+......+.+.+..+.++|+||+..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 35689999999999999999999641 0 0 012234555556677788999999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-h----HHHhhhCCCcccC
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-A----EITDKLGLHSLRQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 150 (181)
......++.+|++++|+|+.+.-.-+.... +...... ...|+|+++||+|....... + ++...+.......
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~~QT~~~-~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 156 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCchhHHHH-HHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence 988888899999999999986543332222 2222121 24679999999998753221 1 2222222222333
Q ss_pred cceEEEEecccCC----------CCHHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCATSG----------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~----------~~v~~~~~~l~~~l~ 178 (181)
...+++.+||++| .++.++++.+.+.+.
T Consensus 157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 4578999999998 589999998877654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.4e-22 Score=138.27 Aligned_cols=155 Identities=23% Similarity=0.248 Sum_probs=100.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCC----Ccccc---ccccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD----KIRPL---WRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~----~~~~~---~~~~~~~~d~ 87 (181)
+|+++|+||+|||||+|+|.+.... ....|........... +..+.+|||||.. +.... ....+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 6999999999999999999876532 1223444444444443 4679999999942 22222 2233466889
Q ss_pred EEEEEECCCcccHH--HHH--HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccC
Q 030187 88 LIFVVDSNDRDRVV--EAR--DELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~ilv~d~~~~~s~~--~~~--~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++++....+... ... .............++|+++|+||+|+.+.... +.+.+.+. .+.+++.+||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECCC
Confidence 98888866443221 211 12222333444467899999999999764221 22222221 244688999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|++++++.|.+.|.+
T Consensus 157 g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 157 REGLRELLFEVANQLEN 173 (185)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998854
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.1e-21 Score=135.64 Aligned_cols=143 Identities=19% Similarity=0.139 Sum_probs=99.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--------Cc-----c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EI-----V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--------~~-----~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
+.+++|+++|++++|||||+++|... .. . ...-|+......+.+.+.++.++||||+.+|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 35689999999999999999999531 00 0 1234677777788889999999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (181)
.......++.+|++|+|+|+.+.-..+.... |..... .++| +++++||+|+.+... .+ ++...+....+
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQTREH-ILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHH-HHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999888999999999999986655444332 222222 3554 788899999876321 12 22222222223
Q ss_pred cCcceEEEEecccC
Q 030187 149 RQRHWYIQSTCATS 162 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~ 162 (181)
.....+++..|+..
T Consensus 156 ~~~~i~~i~~sa~~ 169 (204)
T d2c78a3 156 PGDEVPVIRGSALL 169 (204)
T ss_dssp CTTTSCEEECCHHH
T ss_pred Ccccceeeeeechh
Confidence 33446788888764
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.84 E-value=3.6e-20 Score=129.29 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=104.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCC--c----------------------------------ccccCccceeEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE--I----------------------------------VTTIPTIGFNVET 55 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~--~----------------------------------~~~~~t~~~~~~~ 55 (181)
..+++.++|+++|+.++|||||+++|.... . .....|.......
T Consensus 4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 83 (222)
T d1zunb3 4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 83 (222)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence 456778999999999999999999995210 0 0112234444555
Q ss_pred EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCC
Q 030187 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAM 134 (181)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~ 134 (181)
+...+..+.++|+|||..|..........+|++++|+|+.+.-.-+... ...++.. .+ ..++++.||+|+.+..
T Consensus 84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~---~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASL---LGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHH---cCCCEEEEEEEcccccccc
Confidence 6667889999999999999999888889999999999997653333222 2222222 34 4588999999998753
Q ss_pred CH--h----HHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 135 NA--A----EITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
.. . ++...+....+....++|+++||.+|+|+.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 22 1 222222233344567889999999999883
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=1e-18 Score=124.95 Aligned_cols=110 Identities=21% Similarity=0.138 Sum_probs=86.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--C------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG--E------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~--~------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
-+|+++|+.++|||||+.++... . .. ....|+......+.+++..++++||||+.+|..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 37999999999999999999531 0 00 123367777788999999999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.....++-+|++|+|+|+.+.=..+... .|..... .++|.++++||+|...
T Consensus 87 e~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 87 EVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp THHHHHHHCCEEEEEEETTTSSCHHHHH-HHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHhhhheEEeccccCCcchhHHH-HHHHHHH----cCCCEEEEEecccccc
Confidence 9999999999999999997654433333 3434333 5899999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=7.8e-19 Score=118.71 Aligned_cols=155 Identities=18% Similarity=0.133 Sum_probs=97.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc---cCcccee-EEEEEEcCEEEEEEEcCCCCCc---------ccccccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQ 83 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~-~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 83 (181)
.-.|+++|.+|+|||||+|+|.+...... ..|.... ..........+..+|++|.... .........
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence 34699999999999999999998764311 1122222 2334446677888898885321 122233345
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+++++++.|..+.. ......+..+.. ...|.++++||.|...... ++.........+....+++++||++|
T Consensus 85 ~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~--~~~~~~~~~~~~~~~~~~~~vSA~~g 156 (179)
T d1egaa1 85 DVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNFLDIVPISAETG 156 (179)
T ss_dssp CEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred hcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccchhh--hhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence 678888888876443 223333333333 4567899999999765421 11111110001112347889999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++++.|.+.|.+
T Consensus 157 ~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 157 LNVDTIAAIVRKHLPE 172 (179)
T ss_dssp TTHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999988864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=9.1e-20 Score=126.27 Aligned_cols=119 Identities=25% Similarity=0.338 Sum_probs=85.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccc----ccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~~ilv 91 (181)
...+|+++|+||+|||||+|+|.+.++... .|.......+...+..+.+||+||++.+...+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 467999999999999999999998876432 22233333445566788999999999877665444 3456889999
Q ss_pred EECC-CcccHHHHHHHHHHHh---cCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 92 VDSN-DRDRVVEARDELHRML---NEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 92 ~d~~-~~~s~~~~~~~~~~~~---~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
+|+. +..++.....++.+.. ......++|+++++||+|+.+...
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 9976 4566666666654432 233446899999999999977543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.78 E-value=3.9e-18 Score=121.61 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=85.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|+.++|||||+.+|.... .. ....|+......+.+++.+++++||||+.+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 69999999999999999995210 00 1234777778889999999999999999999999
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
....++-+|++|+|+|+.+.-..+.... |....+ .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTERA-WTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHHH-HHhhhh----ccccccccccccccc
Confidence 9999999999999999976544333333 333333 478999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=4.7e-19 Score=124.89 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=102.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC----------------------Cc------------ccccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG----------------------EI------------VTTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~----------------------~~------------~~~~~t~~~~~~~~~~~~ 60 (181)
+.+++|+++|+.++|||||+.+|... .+ .....|+......+.+.+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 45689999999999999999999520 00 123457777778888999
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~ 132 (181)
.+++++|+|||.+|...+......+|++|+|+|+.+.. ++ .....+. ++.. .++ ++++++||+|..+
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~-~e~g~~~~~QT~eh~~-~~~~---~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc-cccccCchHhHHHHHH-HHHH---cCCCeEEEEEECCCCCC
Confidence 99999999999999999999999999999999997431 11 1111121 1111 244 5889999999876
Q ss_pred CCCH--hH----HHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 133 AMNA--AE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 133 ~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
.... .+ +...+.........++++.+|+..|.|+
T Consensus 159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 5421 12 2222222222334567899999999886
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.77 E-value=1e-18 Score=122.38 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=95.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC---------------------------c-------ccccCccceeEEEEEEcCE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE---------------------------I-------VTTIPTIGFNVETVEYKNI 61 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~---------------------------~-------~~~~~t~~~~~~~~~~~~~ 61 (181)
.+++|+++|+.++|||||+.+|.... . .....|+......++..+.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 46899999999999999999884210 0 0112244444556777889
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHH------HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV------EARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
.+.++|+|||..|........+-+|++++|+|+.+.-.-+ ...+.+ .+.... ...++++++||+|+.....
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~~--~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTM--GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHHHh--CCCceEEEEEcccCCCccc
Confidence 9999999999999999999999999999999997541111 111111 111111 2346889999999875432
Q ss_pred Hh----HHH----hhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 136 AA----EIT----DKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 136 ~~----~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
.+ .+. ..+..........+++++||..|.|+-+
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 11 111 1111112234567889999999999853
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.76 E-value=8.2e-19 Score=124.18 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCC--c--------------------------------ccccCccceeEE
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVE 54 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~--~--------------------------------~~~~~t~~~~~~ 54 (181)
++....+++++|+++|+.++|||||+.+|.... . .....++.....
T Consensus 16 ~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~ 95 (245)
T d1r5ba3 16 LKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 95 (245)
T ss_dssp HHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred HHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccc
Confidence 455567788999999999999999999994210 0 011123333344
Q ss_pred EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccH-----H-HHHHHHHHHhcCCCCCCC-eEEEEEeC
Q 030187 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-----V-EARDELHRMLNEDELRDA-VLLVFANK 127 (181)
Q Consensus 55 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~-piivv~nK 127 (181)
.+.+.+..+.++|+|||..|..........+|++++|+|+.+..-- . .....+ .++.. .++ ++++++||
T Consensus 96 ~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~---~~i~~iiv~iNK 171 (245)
T d1r5ba3 96 YFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART---QGINHLVVVINK 171 (245)
T ss_dssp EEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH---TTCSSEEEEEEC
T ss_pred ccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH---cCCCeEEEEEEc
Confidence 5666778999999999999999999889999999999999753100 0 111111 11121 233 48899999
Q ss_pred CCCCCCCC----HhHHHhhhCCC-----cc-cCcceEEEEecccCCCCHHHHH
Q 030187 128 QDLPNAMN----AAEITDKLGLH-----SL-RQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 128 ~D~~~~~~----~~~~~~~~~~~-----~~-~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+|+..... .+++...+... .. ....++++++||++|+|+.+++
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 99875432 22232222210 01 1235789999999999998754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.8e-18 Score=114.89 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=88.6
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCccccc---Cccc-eeEEEEEEcCEEEEEEEcCCC-CCccc-------c
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIG-FNVETVEYKNISFTVWDVGGQ-DKIRP-------L 77 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~i~D~~G~-~~~~~-------~ 77 (181)
++.+....++|+++|.+|+|||||+|+|.+.+..... ++.. .........+......+.++. ..... .
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 5567778899999999999999999999887643221 1111 112222233333333333331 11111 1
Q ss_pred c---cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-cccCcce
Q 030187 78 W---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRHW 153 (181)
Q Consensus 78 ~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (181)
. ......++.++.+.+....... ....++..... ...++++++||+|+.+..........+... .......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 1 1112234455555666543322 22333333333 367899999999988754333222221100 1112345
Q ss_pred EEEEecccCCCCHHHHHHHHHHHh
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+++.+||++|.|++++++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 788999999999999999988765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.2e-15 Score=110.25 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=92.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc------CCc--ccccCccce-------------------eEEEEEE---------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL------GEI--VTTIPTIGF-------------------NVETVEY--------- 58 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~------~~~--~~~~~t~~~-------------------~~~~~~~--------- 58 (181)
.+.+.|.|.|+||+|||||+++|.. .+. ....|+... ..+.-..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4689999999999999999999963 111 011111110 0110000
Q ss_pred -------------cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 59 -------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 59 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
.++.+.+++|.|....... +...+|.+++|.++...+..+.....+.++.. ++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~---i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aD---------i~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEVAD---------LIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHHCS---------EEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccchh---hhhccceEEEEecCCCchhhhhhchhhhcccc---------EEEE
Confidence 1345778888876544332 33559999999998777777777677766644 8889
Q ss_pred eCCCCCCCCCHhH----HHhhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 126 NKQDLPNAMNAAE----ITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
||+|......... ....+. .........+++.|||.+|.|++++++.|.+..
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 9999876432221 222111 122233456899999999999999999987643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=5.5e-15 Score=111.27 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=89.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-------cc-CccceeEEEEEE-cCEEEEEEEcCCCCCcccc-----cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TI-PTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----WR 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~~-~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-----~~ 79 (181)
.+..++|+|+|.+|+|||||+|.|.+..... .. .|.... .+.. ...++.+|||||-...... ..
T Consensus 53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~ 130 (400)
T d1tq4a_ 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK 130 (400)
T ss_dssp HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSSCCHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccCCCeEEEEeCCCcccccccHHHHHHH
Confidence 3467999999999999999999998754211 11 122222 2222 2345889999995432221 22
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC---------CCCHhHHH--------hh
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---------AMNAAEIT--------DK 142 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~---------~~~~~~~~--------~~ 142 (181)
.....+|.++++.|.. +......+...+.. .++|+++|.||+|... ....+... ..
T Consensus 131 ~~~~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~ 203 (400)
T d1tq4a_ 131 MKFYEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 203 (400)
T ss_dssp TTGGGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhcceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH
Confidence 3356788888887643 22333333333333 4789999999999531 01111111 11
Q ss_pred hCCCcccCcceEEEEecccC--CCCHHHHHHHHHHHhh
Q 030187 143 LGLHSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l~~~l~ 178 (181)
+... .....++|.+|..+ ..|+.++.+.+.+.+.
T Consensus 204 l~~~--~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 204 FREN--GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HHHT--TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHc--CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 1111 11222466788765 5589999999888765
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=9.1e-15 Score=107.29 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=79.5
Q ss_pred Ccc-eEEEEcCCCCChHHHHhhhhcC--C----------cc-------cccCccceeEEEEEE----------------c
Q 030187 16 KEM-RILMVGLDAAGKTTILYKLKLG--E----------IV-------TTIPTIGFNVETVEY----------------K 59 (181)
Q Consensus 16 ~~~-~i~v~G~~~~GKssli~~l~~~--~----------~~-------~~~~t~~~~~~~~~~----------------~ 59 (181)
..+ +|+|+|+.++|||||+.+|... . +. ....|+......+.+ +
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 445 6999999999999999999521 0 11 111233333333322 3
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..++++|||||.+|.......++-+|++++|+|+.+.-..+.... |..... .++|+++++||+|...
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~~----~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHHH----cCCCeEEEEECccccc
Confidence 4679999999999999999999999999999999976544443333 333334 4899999999999643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.53 E-value=3.3e-14 Score=101.03 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=76.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCcccc-------cc--cc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-------WR--HY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~--~~ 81 (181)
+..++|+++|.+|+|||||+|.+.+..... ...|...........+..+.++||||-.+.... .. ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 467999999999999999999999876331 223445556667778899999999995322111 11 12
Q ss_pred ccCccEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 82 FQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....+++++|++++... .-......+...+.... -.++++|+||+|...
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI--WNKAIVALTHAQFSP 161 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG--GGGEEEEEECCSCCC
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh--hhCEEEEEECcccCC
Confidence 24578899998876431 12233334444443211 246899999999875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.53 E-value=3.4e-14 Score=103.77 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=96.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccC-------------------cccee-EEE-----------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIP-------------------TIGFN-VET----------- 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~-------------------t~~~~-~~~----------- 55 (181)
.+.+.|.|.|+||+|||||+++|... +. ....| ..+.. +.+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 46799999999999999999999631 00 00000 00000 111
Q ss_pred ----------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
++..++.+.+++|.|..+....... -+|.+++|..+...+..+.....+.++.. ++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~---~~D~~v~v~~p~~GD~iQ~~k~gilE~aD---------i~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVAD---LTDFFLVLMLPGAGDELQGIKKGIFELAD---------MIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHT---TSSEEEEEECSCC------CCTTHHHHCS---------EEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhc---ccceEEEEeeccchhhhhhhhhhHhhhhh---------eeeE
Confidence 1113567899999998766655443 39999999999888777777666666654 9999
Q ss_pred eCCCCCCCCCHh-----HHHhhhCCC--cccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 126 NKQDLPNAMNAA-----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
||+|+....... +....+... .......+++.+||++|.|++++++.|.+..
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 999987653322 122222221 2223445799999999999999999997654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.45 E-value=2.7e-15 Score=105.63 Aligned_cols=113 Identities=12% Similarity=-0.031 Sum_probs=66.0
Q ss_pred EEEEEEEcCCCCCcccccccc-----ccCccEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHY-----FQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~-----~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
..+.++|+||+..+....... ....+.+++++|+... ..+............+ -..|.++++||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 458999999997654432221 2246688999997532 2222222111111111 3678999999999987
Q ss_pred CCCHhHHHh----------hhC--CCc-------------ccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 133 AMNAAEITD----------KLG--LHS-------------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 133 ~~~~~~~~~----------~~~--~~~-------------~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
......... ... ... -....++++++||++|+|+++++..|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 532221110 000 000 00124578899999999999999988764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=2.5e-10 Score=83.09 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEE--------------------EcCEEEEEEEcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVE--------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~--------------------~~~~~~~i~D~~G 70 (181)
.+|+++|.|++|||||+|.|.+.+ |++..|.+|+.....+ .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 379999999999999999997754 2233333343322111 1225799999999
Q ss_pred CCC-------ccccccccccCccEEEEEEECCC
Q 030187 71 QDK-------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 71 ~~~-------~~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
--. ........++++|+++.|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 422 22223455688999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.99 E-value=9.6e-10 Score=79.20 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=56.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEc-----------------CEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~ 73 (181)
+...+|+++|.|+||||||+|.+.+... ....| |+..+...+... ...+++.|+||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 3668999999999999999999986532 22222 334333334432 35789999998432
Q ss_pred c-------cccccccccCccEEEEEEECCC
Q 030187 74 I-------RPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~-------~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
. -......+++||+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2 1235566789999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.96 E-value=2.2e-09 Score=77.54 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCCc-------------cccccccccCccEEEEEEE-CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030187 62 SFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 62 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
.+.++|+||-... ......|+.+++.+++++. +.....-+........+ .. ...++++|+||
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vitk 207 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVITK 207 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEEC
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEec
Confidence 4889999994321 2345678889998777764 33222222222333232 21 34579999999
Q ss_pred CCCCCC
Q 030187 128 QDLPNA 133 (181)
Q Consensus 128 ~D~~~~ 133 (181)
+|....
T Consensus 208 ~D~~~~ 213 (306)
T d1jwyb_ 208 LDLMDK 213 (306)
T ss_dssp TTSSCS
T ss_pred cccccc
Confidence 998654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=2.3e-09 Score=77.14 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=67.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc-eeE---------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG-FNV--------------------------------------- 53 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~-~~~--------------------------------------- 53 (181)
...+|+|+|..++|||||+|.|.+.++. ...++.. ...
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 3457999999999999999999986632 1122111 000
Q ss_pred ----------E--EEEE-cCEEEEEEEcCCCCCc-------------cccccccccCccEEE-EEEECCCcccHHHHHHH
Q 030187 54 ----------E--TVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLI-FVVDSNDRDRVVEARDE 106 (181)
Q Consensus 54 ----------~--~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~~ 106 (181)
. .+.. ....+.++|+||-... ..+...|+.+++.++ +|.+++...+-+....+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 0 0111 1134889999994321 133455667777555 45556544444444443
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 107 LHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
...+ .. ...++++|+||+|....
T Consensus 185 ~~~~-~~---~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEV-DP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCT
T ss_pred HHHh-Cc---CCCceeeEEeccccccc
Confidence 3333 22 35679999999998764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.92 E-value=1.2e-09 Score=78.00 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=53.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEc-----------------CEEEEEEEcCCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYK-----------------NISFTVWDVGGQD 72 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~ 72 (181)
.+||.+||.|++|||||+|.+...+ |++-.|.+++ +... ...+.+.|+||--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi 77 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE----EecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence 4799999999999999999998654 2233344443 3332 2368899999964
Q ss_pred Ccc-------ccccccccCccEEEEEEECC
Q 030187 73 KIR-------PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 73 ~~~-------~~~~~~~~~~d~~ilv~d~~ 95 (181)
... +.....+++||+++.|+|+.
T Consensus 78 ~ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 78 AGASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp TTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CCcccCCCccHHHHHHHHhccceEEEeecc
Confidence 322 23456678999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.81 E-value=1.5e-09 Score=77.27 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=37.9
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE--EEEEcCEEEEEEEcCCCC
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~ 72 (181)
.....++|+|+|.||+|||||+|+|.+.......++.+.+.. .+.. +-++.++||||-.
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi~ 168 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 168 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCcc
Confidence 445679999999999999999999999876544444443321 1222 2358999999953
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=8.4e-08 Score=65.65 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=58.4
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
...|.|.+++|+.+.+|+.-......+.-.... .++|.++|+||+|+.+++..+.+....... ...++++.+|+
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa 80 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSA 80 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEecc
Confidence 347899999999988765433433333333333 588999999999998754433333222211 11235788999
Q ss_pred cCCCCHHHHHHHHH
Q 030187 161 TSGEGLYEGLDWLS 174 (181)
Q Consensus 161 ~~~~~v~~~~~~l~ 174 (181)
+++.|++++.+.+.
T Consensus 81 ~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 81 KTGMGIEELKEYLK 94 (225)
T ss_dssp TTCTTHHHHHHHHS
T ss_pred ccchhHhhHHHHhc
Confidence 99999999887663
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=2.1e-07 Score=63.64 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=35.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
.-..+++|++|+|||||+|.|.+..... ...|.......+..+ -.++||||-..+.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~ 161 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE 161 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence 3477999999999999999998754211 112333333223222 4789999965544
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.37 E-value=3e-07 Score=62.27 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=68.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc-----c------c-----------ccCccceeEEEEE----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI-----V------T-----------TIPTIGFNVETVE---------------- 57 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~-----~------~-----------~~~t~~~~~~~~~---------------- 57 (181)
+..-|+++|++|+||||.+-+|...-. . . .....++.+....
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 456789999999999999888843100 0 0 0001111111110
Q ss_pred -EcCEEEEEEEcCCCCCccccc----ccc---c-----cCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEE
Q 030187 58 -YKNISFTVWDVGGQDKIRPLW----RHY---F-----QNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLV 123 (181)
Q Consensus 58 -~~~~~~~i~D~~G~~~~~~~~----~~~---~-----~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piiv 123 (181)
..+..+.++||+|........ ..+ . ...+-+++|+|++.. +........+..+ .- --+
T Consensus 85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~~-------~~l 156 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-GL-------TGV 156 (207)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-CC-------SEE
T ss_pred HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-CC-------ceE
Confidence 124678999999976554321 111 1 245789999998744 3333333333322 21 266
Q ss_pred EEeCCCCCCCC-CHhHHHhhhCCC
Q 030187 124 FANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 124 v~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
++||.|....- ..-.+....+++
T Consensus 157 I~TKlDet~~~G~~l~~~~~~~~P 180 (207)
T d1okkd2 157 IVTKLDGTAKGGVLIPIVRTLKVP 180 (207)
T ss_dssp EEECTTSSCCCTTHHHHHHHHCCC
T ss_pred EEeccCCCCCccHHHHHHHHHCCC
Confidence 89999986543 344555555554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=1.7e-07 Score=66.45 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=62.6
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+..+|+++.|+|+.+|-+.. ...+.++++ ++|.++|+||+|+.+....+++.+.+... +...+.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~~i~ 76 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIRSLS 76 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHhc-----CCccce
Confidence 345678899999999997654332 233444443 57899999999998876556665555432 234678
Q ss_pred ecccCCCCHHHHHHHHHHHhh
Q 030187 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+|+.++.+..++.+.+.+.+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhh
Confidence 999999998888777666544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=4.2e-07 Score=61.78 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhh
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.++.+.-|+++|++|+||||.+-+|.
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 45667789999999999999988885
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.28 E-value=2.7e-07 Score=62.51 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=44.5
Q ss_pred CEEEEEEEcCCCCCccccc----ccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|........ ..+ ..+++-+++|.|++..+.-......+.+.+.. --+++||.|....
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~~ 164 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDAR 164 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCSS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCcccc
Confidence 4578999999976554321 111 23578899999987553333333333332221 2578899997654
Q ss_pred C-CHhHHHhhhCC
Q 030187 134 M-NAAEITDKLGL 145 (181)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (181)
- ..-.+....++
T Consensus 165 ~G~~l~~~~~~~~ 177 (207)
T d1ls1a2 165 GGAALSARHVTGK 177 (207)
T ss_dssp CHHHHHHHHHHCC
T ss_pred chHHHHHHHHHCC
Confidence 2 22233444444
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.27 E-value=2.1e-06 Score=58.15 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=17.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhh
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+.+.+.-|+++|++|+||||.+-+|.
T Consensus 8 ~~k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 8 PDKIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp CSSSSEEEEEECSCCC----HHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34455678889999999999988885
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=3.6e-07 Score=61.97 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=66.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC-----C-c--------c--------cccCccceeEEEEE---------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG-----E-I--------V--------TTIPTIGFNVETVE--------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~-----~-~--------~--------~~~~t~~~~~~~~~--------------- 57 (181)
+.+.-|+++|++|+||||.+-+|... . . . ......++......
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 34566889999999999999988521 0 0 0 00001111111111
Q ss_pred --EcCEEEEEEEcCCCCCcccc----c---ccccc-----CccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEE
Q 030187 58 --YKNISFTVWDVGGQDKIRPL----W---RHYFQ-----NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLL 122 (181)
Q Consensus 58 --~~~~~~~i~D~~G~~~~~~~----~---~~~~~-----~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pii 122 (181)
..+..+.++||+|....... . ....+ ..+-.++|.|++.. +........+..+ .+--
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~ 158 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTG 158 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCE
T ss_pred HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCce
Confidence 12457899999996543321 1 11111 25689999998643 2233322222211 1236
Q ss_pred EEEeCCCCCCCC-CHhHHHhhhCCC
Q 030187 123 VFANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 123 vv~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
+++||.|..... ..-.+....+++
T Consensus 159 lIlTKlDe~~~~G~~l~~~~~~~~P 183 (211)
T d2qy9a2 159 ITLTKLDGTAKGGVIFSVADQFGIP 183 (211)
T ss_dssp EEEECCTTCTTTTHHHHHHHHHCCC
T ss_pred EEEeecCCCCCccHHHHHHHHHCCC
Confidence 789999987653 223444444443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=9.9e-08 Score=65.52 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=57.9
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
...|.|.+++|+++.+|+.-......+.-.... .+++.++|+||+|+.+....++....+. ..+...+++++.+|+
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTSS 82 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECCH
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeeec
Confidence 346899999999998775433343433333333 5889999999999987543333222111 111223457889999
Q ss_pred cCCCCHHHHHHHH
Q 030187 161 TSGEGLYEGLDWL 173 (181)
Q Consensus 161 ~~~~~v~~~~~~l 173 (181)
+++.|++++.+.|
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999998876654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=5.8e-06 Score=56.50 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+|.|--|||||||++++...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 3678899999999999999764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=1.1e-06 Score=60.19 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-----------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-----------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
-..+++|++|+|||||+|.|.+.... ....|..... +...+ =.++||||-..+.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETT--EEEESSCSCSSCC
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--EecCC--CEEEECCcccccc
Confidence 35689999999999999999876421 1112222222 22333 2588999976654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.98 E-value=1.7e-06 Score=56.75 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.||+++|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 4799999999999999999975
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.89 E-value=2.5e-06 Score=56.08 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-+|+|.|++|+|||||++.|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.87 E-value=3.2e-06 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+|+++|+|||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.85 E-value=5e-06 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+..+|++.|+|||||||+.+.|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 4668999999999999999999964
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.79 E-value=6.2e-06 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++.+|+++|+|||||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.79 E-value=6.8e-06 Score=54.55 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.++|+++|+|||||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=6.4e-06 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|+|++|||||||+++|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999975
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.76 E-value=7.6e-06 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.++..|+++|+|||||||+..+|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.75 E-value=8.6e-06 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.+|+++|+|||||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999964
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.72 E-value=8.4e-06 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|++.|+|||||||++++|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.71 E-value=1.1e-05 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+-.+|+++|+|||||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999975
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.71 E-value=9.5e-06 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|+|+|+|||||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=5.3e-05 Score=53.28 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=43.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCc--c----cccCccceeEEEEEE---cCEEEEEEEcCCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--V----TTIPTIGFNVETVEY---KNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~----~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~ 73 (181)
..+-.-|.|+|+.++|||+|+|+|.+... . ....|.|+-.+.... .+..+.++||.|...
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 44456889999999999999999997652 1 123467765554433 457899999999543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.65 E-value=1.3e-05 Score=52.85 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|+|||||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.65 E-value=1.2e-05 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|++.|+|||||||+.+.|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999964
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=1.3e-05 Score=52.64 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|+++|+|||||||+...|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=1.6e-05 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|+++|+|||||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.9e-05 Score=50.51 Aligned_cols=21 Identities=43% Similarity=0.505 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|++||||||+...|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=5.9e-05 Score=50.08 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.5
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.++..-...+.+-+++++|+||+|||++++.|...
T Consensus 31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence 455666666778889999999999999999888654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=2.9e-05 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+..=|+++|+|||||||+..++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34667899999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=2.5e-05 Score=52.35 Aligned_cols=22 Identities=55% Similarity=0.572 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.49 E-value=3.2e-05 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++.+.|.++|.|||||||+...|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999988863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.49 E-value=2.5e-05 Score=50.58 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
+.|+|.+|||||||+++|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999974
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=2.9e-05 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+++|+|||||||....|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=2.9e-05 Score=50.61 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998863
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=7.8e-05 Score=52.09 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.9
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.++..-...+.+-++++||+||+|||++++.|...
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 556666677778889999999999999999988654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=3.2e-05 Score=50.04 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
.+|+++|++||||||+...|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 479999999999999988874
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.42 E-value=3.6e-05 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+|+||+||||+||+++|..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999964
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.41 E-value=3.6e-05 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|+|||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888843
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.41 E-value=3.6e-05 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-|+|.|++||||||+++.|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47888999999999999884
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.39 E-value=5.8e-05 Score=52.45 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|++.||||+||||+...+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999998865
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=4.5e-05 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
=|+++||+||||||+++.|...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.37 E-value=4.8e-05 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-|++.|++||||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.36 E-value=5.1e-05 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-|+++|+|||||||+...|..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999964
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.2e-05 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.=+++|+|++|||||||++-+.+-
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999988763
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.35 E-value=6.2e-05 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++.+.|+|-|||||||||....|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999864
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=5.1e-05 Score=49.00 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-++++|++||||||+.+.|..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=5.1e-05 Score=50.38 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=20.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.--|+++|+|||||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999965
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.34 E-value=8.8e-05 Score=48.86 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....++-|+|.|++|||||||.+.|..
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344567799999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=5.7e-05 Score=49.58 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+++||+|+||+||+++|..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.31 E-value=5.8e-05 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 67899999999999999998643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=6e-05 Score=49.96 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+|+||+|||||||++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999854
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.29 E-value=6.7e-05 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++-+.+-
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.29 E-value=6.4e-05 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 6899999999999999977764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=6.7e-05 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++++|++|||||||++.+.+
T Consensus 42 e~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3799999999999999998875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=7.5e-05 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++++|++|||||||++.+.+
T Consensus 27 ei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3689999999999999998865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=7.4e-05 Score=50.19 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
=|+++||+|||||||+++|..
T Consensus 4 livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999964
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=8.7e-05 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++-+.+-
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999988753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.23 E-value=8.2e-05 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++||.|||||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4678999999999999999764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.22 E-value=8.1e-05 Score=48.29 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
.|+++|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47889999999999998885
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.18 E-value=9.6e-05 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6899999999999999988764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=9.7e-05 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=-++++|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 368999999999999999887643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.17 E-value=0.00011 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 37899999999999999988764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.17 E-value=0.00014 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|++.||||+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345699999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.15 E-value=0.0001 Score=48.20 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.5
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030187 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~ 38 (181)
|+|.|.+||||||+++.|.
T Consensus 4 ivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3567999999999999885
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.15 E-value=9.6e-05 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.=+++++|++|||||||++-+.+
T Consensus 44 Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 44 GETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 34899999999999999998865
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=5.5e-05 Score=49.88 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|.++|+|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999998864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.14 E-value=0.00015 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
=|++.|++||||||+.+.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366779999999999999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.13 E-value=0.00011 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-++++|+.|+|||||++.+.+-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999998753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.00017 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.||||+||||+.+.+..
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHh
Confidence 45799999999999999988864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.12 E-value=0.00023 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+...+++.||+|+||||+++.+..
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445799999999999999988865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00012 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-++++|+.|+|||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.11 E-value=0.00013 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.+.++|++|||||||++.+.+-.
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999887653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.09 E-value=8.5e-05 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999998643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=8.8e-05 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.07 E-value=0.00015 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.||||+||||+++.+..
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00018 Score=48.33 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
++-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999998884
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00022 Score=50.70 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.3
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhh
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.|+.....+.++-|+|.|++||||||+.+.|.
T Consensus 70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 34445556778999999999999999988874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.99 E-value=0.00042 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-.+++.|+||+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999988864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.99 E-value=0.00022 Score=47.09 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.98 E-value=0.00019 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|+|||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 5799999999999999999764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.97 E-value=0.0002 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999988764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.97 E-value=0.0034 Score=39.93 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.5
Q ss_pred chHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 3 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+.+.+.+...+...-|++-|+-|+|||||++.+...
T Consensus 19 ~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence 34445555455566778999999999999999988654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.96 E-value=0.00041 Score=46.51 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.6
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.+...++..-|.+.|.|||||||+.+.|..
T Consensus 16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 16 RTELRNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445556778999999999999999998864
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.95 E-value=0.0003 Score=51.67 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=28.2
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.++..-...+.+-++++||+||+|||++++.|..
T Consensus 31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 45556666677888999999999999999976654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.94 E-value=0.00041 Score=47.89 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....-.++|.|++|+|||||+.++..
T Consensus 26 ~~~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 26 GLRAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp HTCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred hccCCEEEEEcCCCCcHHHHHHHHHH
Confidence 33455788999999999999998853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.93 E-value=0.0001 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 378999999999999999887643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.91 E-value=0.00023 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...+|+|.|++||||||+++.|...
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEeeccccchHHHHHHhhh
Confidence 3457999999999999999999853
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00049 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.-.+++.||+|+||||+++.+...
T Consensus 32 ~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 32 NLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChHHHHHHHHHH
Confidence 3356999999999999999888653
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.88 E-value=0.0003 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.++-|+|.|.+||||||+.+.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988854
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00058 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+++.||+|+||||+++.+..
T Consensus 35 ~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 35 NMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCchhhHHHHHH
Confidence 345799999999999999987753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00028 Score=47.38 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|.|||||||+|+...|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999998864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.00056 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+-.|++.||||+|||++++.+..
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHH
Confidence 344699999999999999999985
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.74 E-value=0.00064 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.+++.||||+|||++++.+...
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHHH
Confidence 3457999999999999999988753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00035 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.++++||||+|||.|.+.+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 345799999999999999998875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.00048 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+++.||||+||||++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.00088 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+++.||+|+||||++..+..
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4699999999999999988865
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00061 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....+++.||+|+||||++..+..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999988864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0013 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=26.8
Q ss_pred HHHHHHhhhccCcce-EEEEcCCCCChHHHHhhhhc
Q 030187 5 FTKLFSRLFAKKEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~-i~v~G~~~~GKssli~~l~~ 39 (181)
+.++.+.....+... +++.|++|+||||++..+..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 455666666666444 99999999999999987754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00064 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.||||+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 4599999999999999998874
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.49 E-value=0.0006 Score=50.97 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+-+|+++||+|||||-|.++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999954
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.48 E-value=0.0011 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.196 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.||||+|||++.+.+..
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.45 E-value=0.0008 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999988653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0008 Score=44.59 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--+.|.|+||+|||+|+.++..
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999988864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.001 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhh
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l 37 (181)
.+++++-|+|-|++|||||||...+
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHH
Confidence 3456789999999999999998766
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.0013 Score=45.57 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.|++.|+||+|||+|++.+...
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHHH
Confidence 3457999999999999999998754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0011 Score=44.92 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
--++|.|+||+|||+|+.++...
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999988643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.28 E-value=0.0011 Score=43.91 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0015 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
+-|+|.|.+||||||+.+.|..
T Consensus 4 ~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5688999999999999998753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.12 E-value=0.0015 Score=44.50 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-++|.|+||+|||+|..++..
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0016 Score=43.38 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|-|+.||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488889999999999998863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.04 E-value=0.0034 Score=43.70 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+..-|+|.|.+|+|||||...+..
T Consensus 40 ~~~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 40 CDLDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344556788999999999999988754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.03 E-value=0.001 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=17.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+++.-|+|.|.+||||||+.+.|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 455679999999999999998773
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.01 E-value=0.0022 Score=42.37 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=23.7
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..++...+++ -.+++.||+++|||.|++.+..
T Consensus 44 ~~~l~~~PKk--n~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 44 KSFLKGTPKK--NCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp HHHHHTCTTC--SEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHcCCCCc--eEEEEECCCCccHHHHHHHHHH
Confidence 3444444333 5789999999999999988864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0017 Score=43.92 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+|-|+.||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.96 E-value=0.0022 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
+-|+|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.88 E-value=0.0011 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
-.+++.|+||+|||+++.++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 479999999999999999885
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.87 E-value=0.0022 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.--++|.|+||+|||+|+.++...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456889999999999999888643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0044 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.+++.|++|+||||++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999887743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0034 Score=41.87 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=19.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+..=|+|-|+.||||||++..|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 345578889999999998887743
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.73 E-value=0.0028 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++|.|+||+|||+|+.++..
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.70 E-value=0.0033 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-+++++||+|+|||-+..+|..
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 3567899999999999999988853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.69 E-value=0.0032 Score=40.80 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-|++.|++|+||||+.-.|....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3468999999999999998887543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.64 E-value=0.0036 Score=40.56 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-|++.|++|+||||+.-.|....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999887544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0033 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++|.|+||+|||+|..++..
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0054 Score=43.54 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.++++||+|+|||.|...|..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 699999999999999998864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.33 E-value=0.0047 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+.--++|.|+||+|||+|+.++.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 34567888999999999987764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.33 E-value=0.0051 Score=39.56 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 4568999999999999998887553
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.00072 Score=44.33 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.9
Q ss_pred EEEcCCCCChHHHHhhhh
Q 030187 21 LMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 21 ~v~G~~~~GKssli~~l~ 38 (181)
+++|+.||||||++..+.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999884
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0053 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|=|.-||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999864
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.0036 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.9
Q ss_pred EEEEcCCCCChHHHHhhh
Q 030187 20 ILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l 37 (181)
-+++|+.|+||||++..+
T Consensus 27 nvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEECCTTTCSTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 368899999999999876
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.17 E-value=0.0056 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
+++.|+||+|||.+.+.+..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999998864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.12 E-value=0.017 Score=42.23 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=25.3
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.+......==|+|.|++||||||.++.+...
T Consensus 150 l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 150 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 44555566667999999999999999998753
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.12 E-value=0.0059 Score=42.16 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.3
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-+++.|+||+|||+|+.++.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999987775
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=94.93 E-value=0.0048 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..++|.|=|+-|+||||+++.|...
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.91 E-value=0.0046 Score=43.15 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=14.9
Q ss_pred eEEEEcCCCCChHHH-Hhhh
Q 030187 19 RILMVGLDAAGKTTI-LYKL 37 (181)
Q Consensus 19 ~i~v~G~~~~GKssl-i~~l 37 (181)
.++|+|+||+||||. ++++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHH
Confidence 478999999999975 4443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.85 E-value=0.0061 Score=42.89 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.7
Q ss_pred eEEEEcCCCCChHHHH
Q 030187 19 RILMVGLDAAGKTTIL 34 (181)
Q Consensus 19 ~i~v~G~~~~GKssli 34 (181)
.++|.|++||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.84 E-value=0.0076 Score=40.22 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
+.+.|++|+|||.|++.+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999888654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.0079 Score=43.85 Aligned_cols=20 Identities=15% Similarity=0.511 Sum_probs=16.7
Q ss_pred cceEEEEcCCCCChHHHHhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l 37 (181)
.++ +|+|+.|+|||+++..+
T Consensus 26 ~l~-~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 26 NFT-SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp SEE-EEECSTTSSHHHHHHHH
T ss_pred CEE-EEECCCCCCHHHHHHHH
Confidence 343 57899999999999987
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.66 E-value=0.078 Score=36.47 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=46.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
--..+.|++++|||+|+..++...-. .+....++|+.+.-.......... +.|-+ +++. +
T Consensus 61 ~i~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~i-l~~~---~ 120 (269)
T d1mo6a1 61 RVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLGV-DTDSL-LVSQ---P 120 (269)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHTC-CGGGC-EEEC---C
T ss_pred eeEEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhCC-CHHHe-EEec---C
Confidence 35678999999999998877632110 133457778888543222212122 23333 3444 3
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
++.+........+... +.+.++|+
T Consensus 121 ~~~E~~~~~~~~l~~~----~~~~liIi 144 (269)
T d1mo6a1 121 DTGEQALEIADMLIRS----GALDIVVI 144 (269)
T ss_dssp SSHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred CCHHHHHHHHHHHHhc----CCCCEEEE
Confidence 4566666656555543 44445553
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0095 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=17.3
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-.++.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46689999999999988774
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.60 E-value=0.0096 Score=40.17 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|++.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998854
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.48 E-value=0.011 Score=42.14 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++|.|=|+-|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 478999999999999999988653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.011 Score=39.37 Aligned_cols=23 Identities=43% Similarity=0.395 Sum_probs=19.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..=|++-|.-||||||+++.|..
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999988853
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.011 Score=43.44 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.++|+|.+|+|||+++..+..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 3599999999999999877753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.07 E-value=0.091 Score=36.10 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=43.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
--+.+.|++++|||+|+..++...-. .+..+.++|+.+.-+......... +.|-++ ++. +
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~---~ 117 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQ---P 117 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EEC---C
T ss_pred eEEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEc---C
Confidence 35678999999999999888653210 122456788887543322111111 233333 333 4
Q ss_pred ccHHHHHHHHHHHhcC
Q 030187 98 DRVVEARDELHRMLNE 113 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~ 113 (181)
.+.+........+...
T Consensus 118 ~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 118 DNGEQALEIMELLVRS 133 (268)
T ss_dssp SSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4566666666666553
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.03 E-value=0.019 Score=39.60 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++-.+.+.|++++|||+|++.+..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 456888999999999999988864
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.01 E-value=0.013 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|.|=|+-|+||||+++.|..
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred eEEEEECCcCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.023 Score=39.60 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.=+++++|++|+|||+|+..+..+
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 3348999999999999999888654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.43 E-value=0.021 Score=40.36 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.++++||+|+|||.+...|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678889999999999888753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.025 Score=38.96 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--+.+.|+|++|||+|+-+++.
T Consensus 55 ~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHHHHHH
Confidence 4578899999999999888854
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.023 Score=40.92 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030187 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l 37 (181)
--.+|.|+||+|||+++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHH
Confidence 35788999999999987543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.034 Score=33.34 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhh
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.++.+.|.+-|..|+|||++.+.|.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 4677999999999999999998884
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.02 E-value=0.048 Score=37.23 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=44.4
Q ss_pred CEEEEEEEcCCCCCcccc-ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCC-CH
Q 030187 60 NISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM-NA 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~-~~ 136 (181)
.+.+.++|+|+....... ......-||.++++.+.. ..++.........+.......+.+ .-++.|+.+..... ..
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence 356899999975533222 222234588888888764 445544443322221111112333 34778998876532 12
Q ss_pred hHHHhhhCCC
Q 030187 137 AEITDKLGLH 146 (181)
Q Consensus 137 ~~~~~~~~~~ 146 (181)
+.+.+.++..
T Consensus 194 ~~~~~~~~~~ 203 (269)
T d1cp2a_ 194 DAFAKELGSQ 203 (269)
T ss_dssp HHHHHHHTCC
T ss_pred hhhHhhcCCe
Confidence 3344555543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.63 E-value=0.072 Score=36.11 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=19.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
....-|++.|++|+||+.+...+.
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHHHHHH
Confidence 345678999999999999887774
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=0.12 Score=35.28 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=17.0
Q ss_pred cCcceEEEE-cCCCCChHHHHhhh
Q 030187 15 KKEMRILMV-GLDAAGKTTILYKL 37 (181)
Q Consensus 15 ~~~~~i~v~-G~~~~GKssli~~l 37 (181)
+...+|+++ |..|+||||+.-.|
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHH
Confidence 444555554 99999999987666
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.13 E-value=0.071 Score=36.79 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=|++++|++|+|||+|+..+..+
T Consensus 69 Qr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 69 GKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHH
Confidence 37999999999999998888643
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.98 E-value=0.29 Score=32.08 Aligned_cols=71 Identities=7% Similarity=0.044 Sum_probs=45.2
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCHh
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAA 137 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~ 137 (181)
.+.+.++|+++.... .....+..+|.++++...+ ..++.........+ ++ .+.|++ +|.|+.|..+.....
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~~~~~ 182 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDRDIPP 182 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTTCCCH
T ss_pred cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHH-hh---hhhhhhhhhhcccccccchhhh
Confidence 356899999976543 2334456799999999875 44555555444333 22 456655 788999876544333
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.11 E-value=0.07 Score=32.28 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=15.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
..++.+++|+|||.++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 34778999999998876554
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.02 E-value=0.096 Score=36.08 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred CEEEEEEEcCCCCCccccccc-cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCC-CH
Q 030187 60 NISFTVWDVGGQDKIRPLWRH-YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAM-NA 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~-~~ 136 (181)
.+.+.++|+|+.......... ....++.++++.... ..++.........+.......+.++ .++.|+.+..... ..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 196 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI 196 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence 366889999876533222221 123467777776543 4444444433332222111234444 4778988754321 12
Q ss_pred hHHHhhhCC
Q 030187 137 AEITDKLGL 145 (181)
Q Consensus 137 ~~~~~~~~~ 145 (181)
+++.+.++.
T Consensus 197 ~~~~~~~g~ 205 (289)
T d2afhe1 197 IALANKLGT 205 (289)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHcCC
Confidence 344444444
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.075 Score=37.25 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHh
Q 030187 20 ILMVGLDAAGKTTILY 35 (181)
Q Consensus 20 i~v~G~~~~GKssli~ 35 (181)
-++.|.+|+|||||-.
T Consensus 17 alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 17 AVFFGLSGTGKTTLST 32 (313)
T ss_dssp EEEECSTTSSHHHHHC
T ss_pred EEEEccCCCCccccee
Confidence 4799999999999864
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.11 Score=34.97 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-+++.|+..+||||++..+.
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeccCchhhHHHHHHHH
Confidence 46899999999999999884
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.17 E-value=0.081 Score=37.20 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.0
Q ss_pred eEEEEcCCCCChHHHHhh
Q 030187 19 RILMVGLDAAGKTTILYK 36 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~ 36 (181)
--++.|.+|+|||||-..
T Consensus 16 valffGLSGTGKTTLs~~ 33 (318)
T d1j3ba1 16 VAVFFGLSGTGKTTLSTD 33 (318)
T ss_dssp EEEEEECTTSCHHHHTCB
T ss_pred EEEEEccCCCCccccccC
Confidence 358999999999998643
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.12 E-value=0.12 Score=34.49 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-+++.||..+||||++.++.-
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHH
Confidence 378999999999999998843
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.02 E-value=0.13 Score=33.55 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....+++-|++|+|||++...+..
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999988764
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.19 Score=34.35 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.9
Q ss_pred cceEEEEcCCCCChHHHHhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l 37 (181)
.--|.+.|..|+||||+.-.+
T Consensus 8 p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHH
Confidence 345678999999999986666
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.55 E-value=0.098 Score=36.81 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.6
Q ss_pred eEEEEcCCCCChHHHHh
Q 030187 19 RILMVGLDAAGKTTILY 35 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~ 35 (181)
.-++.|.+|+|||||-.
T Consensus 16 ~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 16 VTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEEccCCCCccccee
Confidence 35799999999999974
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=88.47 E-value=0.16 Score=32.57 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
++|+|..+||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999998743
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.67 E-value=0.13 Score=35.57 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.=|++++|++|+|||+|+..+..+.
T Consensus 68 GQr~~If~~~g~GKt~ll~~~~~~~ 92 (285)
T d2jdia3 68 GQRELIIGDRQTGKTSIAIDTIINQ 92 (285)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEeecCCCCChHHHHHHHHHhH
Confidence 3489999999999999988776543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=87.18 E-value=0.11 Score=31.03 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=14.2
Q ss_pred CcceEEEEcCCCCChHHH
Q 030187 16 KEMRILMVGLDAAGKTTI 33 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssl 33 (181)
+.-+.++.+++|+|||..
T Consensus 6 ~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TTCEEEECCCTTSSTTTT
T ss_pred cCCcEEEEcCCCCChhHH
Confidence 446778889999999943
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.94 E-value=0.22 Score=32.30 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.5
Q ss_pred ceEEEEcCC-CCChHHHHhhhh
Q 030187 18 MRILMVGLD-AAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~-~~GKssli~~l~ 38 (181)
-++.|.|-. |+||||+.-.|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 378899995 999999987773
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.74 E-value=0.26 Score=33.65 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhh
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l 37 (181)
+..+.....+...-.-++-|..|||||-..-..
T Consensus 92 i~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 92 HQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence 345566667777888999999999999765444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.38 E-value=0.17 Score=34.83 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=|++++|++|+|||+|+..+...
T Consensus 68 Qr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 68 QRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHT
T ss_pred ceEeeccCCCCChHHHHHHHHhh
Confidence 37899999999999998765443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.04 E-value=0.28 Score=31.39 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.2
Q ss_pred eEEEEcCCCCChHHHH
Q 030187 19 RILMVGLDAAGKTTIL 34 (181)
Q Consensus 19 ~i~v~G~~~~GKssli 34 (181)
++++.+|+|+|||.+.
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 4788999999999643
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.52 E-value=0.31 Score=29.78 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=13.8
Q ss_pred EEEcCCCCChHH-HHhhh
Q 030187 21 LMVGLDAAGKTT-ILYKL 37 (181)
Q Consensus 21 ~v~G~~~~GKss-li~~l 37 (181)
+++||=.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 56555
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.77 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhh
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l 37 (181)
..+.+.........-++.|.+|||||-+.-+.
T Consensus 65 ~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 65 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence 34455566667789999999999999775554
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=83.90 E-value=0.59 Score=28.53 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030187 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~ 38 (181)
=+++||=.|||||-+-+..
T Consensus 10 ~lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeccccHHHHHHHHHH
Confidence 4568999999998654443
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| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.29 E-value=0.16 Score=32.91 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.4
Q ss_pred ceEEEEcCCCCChHHHH
Q 030187 18 MRILMVGLDAAGKTTIL 34 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli 34 (181)
-++++.+|+|+|||+..
T Consensus 41 ~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp SCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCCchhHHH
Confidence 37899999999999753
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| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.90 E-value=0.53 Score=30.72 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=43.2
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhH
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAE 138 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~ 138 (181)
.+.+.++|+|+.... .....+..+|.+++|.... ..++........ ..+... ..++-+|.|+.+..... ..++
T Consensus 109 ~~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~-~~~~~~--~~~~~iv~N~~~~~~~~~~~~~ 182 (232)
T d1hyqa_ 109 STDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKI-VAERLG--TKVLGVVVNRITTLGIEMAKNE 182 (232)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHH-HHHHHT--CEEEEEEEEEECTTTHHHHHHH
T ss_pred ccceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhh-hhhhcc--cccccccccccccccccchhhh
Confidence 355889999986543 2334456799999999874 333333333222 222211 22355788998754321 2234
Q ss_pred HHhhhCC
Q 030187 139 ITDKLGL 145 (181)
Q Consensus 139 ~~~~~~~ 145 (181)
+.+.++.
T Consensus 183 i~~~~~~ 189 (232)
T d1hyqa_ 183 IEAILEA 189 (232)
T ss_dssp HHHHTTS
T ss_pred HHhhcCC
Confidence 4444443
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