Citrus Sinensis ID: 030200

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEccccccccccHHHHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlinrflrrgfctavarpwlfvglgnpgdkykgtrhnvGFEMIDAFAEsqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngLKSVMNNFRGNREFARLRigigrppgqmdpKAFLLQKFNAIARERELNNIL
Flexible Loop (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIgrppgqmdPKAFLLQKFNAIARERELNNIL
Low Complexity Region (SEG)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVlrlrhngghgghnglKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Disordered region (IsUnstruct)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGR*******KAFLLQKFNAI**********
Disordered Region (DISOPRED)
**************VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Disordered Region (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Disordered Region (DISPRO)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.961	0.794	0.8	6e-79
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.872	0.548	0.620	3e-57
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	yes	no	0.872	0.632	0.620	2e-56
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.861	0.609	0.615	2e-55
Q5ZCL8	259	Chloroplastic group IIB i	no	no	0.861	0.602	0.608	1e-54
Q9LF14	240	Chloroplastic group IIB i	no	no	0.872	0.658	0.613	7e-54
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.872	0.642	0.626	3e-53
Q10LI6	186	CRS2-like protein, chloro	no	no	0.640	0.623	0.75	2e-44
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.872	0.741	0.481	3e-40
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.828	0.797	0.467	2e-37

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  293 bits (749), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 140/175 (80%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61  AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
             GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER
Sbjct: 121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARER 175

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  221 bits (562), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 130/158 (82%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL   GGHGGHNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
            +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E 
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEE 251

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  218 bits (555), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 128/158 (81%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
           +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G +GDAP++LA
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP   LRL   GGHGGHNG++S++N
Sbjct: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIIN 173

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
           + + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E
Sbjct: 174 HLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQE 211

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 121/156 (77%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 61  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 120

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 121 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 180

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
             G REF RL IGIG PPG+MDP+AFLLQKF++  R
Sbjct: 181 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 216

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 118/156 (75%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL K
Sbjct: 64  PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GVLRL+  GGHG HNGL++VM  
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMEC 183

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
              +RE  RL IGIG PPG+MD +AFLLQKF++  R
Sbjct: 184 LDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEER 219

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  209 bits (532), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 120/158 (75%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+  GG G HNG+KSVM +
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
             G R F RL IGIG+PPG MD KAFLLQKF+ + +++
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQ 202

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 117/158 (74%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+  GGH  HNGLK+V  +
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 170

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
             G R + RL IGIG PPG MD KAFLLQKF+ + R++
Sbjct: 171 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQ 208

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 95/116 (81%)

Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVL 74
           V  PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+     KA FG+G V   PVL
Sbjct: 57  VINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVL 116

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           LAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 117 LAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 109/160 (68%), Gaps = 2/160 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
           WL VGLGNPG KY G RHNVGF ++D  A  +G         A   +  VGDAPV+LAKP
Sbjct: 35  WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKP 94

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            +YMNLSG     L+A+YK+P++R++V HD++ +P   L+L+  GG  GHNGL+S+  + 
Sbjct: 95  ASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL 154

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELN 178
            G+ ++ R+R+GIGRPPG+MD  +F+LQ F+  A  +EL+
Sbjct: 155 -GSPDYVRVRVGIGRPPGRMDAASFVLQDFS-TAERKELD 192

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
           WL VGLGNPG++Y  TRHN+GF  ++  AE  G++      K+   +G +    V L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 79  QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           QTYMNLSG++   L  +YK+ P   +LV +DD+ LP   LRLR  G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN 169
             G  EF RLRIGIG+PPGQMD   ++L +F 
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFT 152

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.801	0.844	1e-82
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.798	0.828	1e-81
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.798	0.822	2e-81
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.798	0.811	9e-80
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.798	0.811	1e-79
358248836	218	uncharacterized protein LOC100808506 [Gl	0.961	0.798	0.816	1e-79
224052908	222	predicted protein [Populus trichocarpa]	0.961	0.783	0.821	2e-79
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.961	0.801	0.798	7e-78
297808049	218	aminoacyl-tRNA hydrolase [Arabidopsis ly	0.961	0.798	0.798	3e-77
79517018	219	Peptidyl-tRNA hydrolase [Arabidopsis tha	0.961	0.794	0.8	3e-77

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/174 (84%), Positives = 156/174 (89%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NRF RR FCTA  RPWLFVGLGNPGDKYKGTRHNVGFEMI+AFAESQGI M+TVHCKA
Sbjct: 1   MLNRFSRRLFCTASPRPWLFVGLGNPGDKYKGTRHNVGFEMINAFAESQGIPMDTVHCKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGVLRL H
Sbjct: 61  IFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVVVFHDDMSLPCGVLRLHH 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
            GGHG HNGLKSV+ +FRGNREF RLRIGIG+PPGQMDPKAFLLQKF+A ARER
Sbjct: 121 KGGHGNHNGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFSATARER 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 159/175 (90%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           HNGGHG HNGLKSV+ +FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ER
Sbjct: 121 HNGGHGYHNGLKSVIYHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQER 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 159/175 (90%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GI MN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESVGIPMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMTLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           HNGGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ER
Sbjct: 121 HNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQER 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  301 bits (770), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 142/175 (81%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ER
Sbjct: 121 HNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQER 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/175 (81%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ER
Sbjct: 121 HNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQER 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 152/174 (87%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++R  RR FCT   RPWLFVGLGNPGDK+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLHRLSRRCFCTFTPRPWLFVGLGNPGDKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  IFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
            GGHG H GLKSV+ NFRGNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+R
Sbjct: 121 KGGHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/179 (82%), Positives = 156/179 (87%), Gaps = 5/179 (2%)

Query: 2   LINRFLRRGFCTAVA-----RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT 56
           ++NR  RR FCTA A      PWLFVGLGNPG+K+KGTRHNVGFEMIDAFA S GISMN 
Sbjct: 1   MLNRVSRRCFCTAAAAPTTLSPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAGSLGISMNI 60

Query: 57  VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116
             CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGV
Sbjct: 61  PLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVFHDDMELPCGV 120

Query: 117 LRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           LRL+  GGHG H GLKSV+N+FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA ARER
Sbjct: 121 LRLQEKGGHGCHRGLKSVINHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATARER 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 151/174 (86%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  ISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
            GGHG H GLKSV+ +F+GNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+R
Sbjct: 121 KGGHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808049|ref|XP_002871908.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata] gi|297317745|gb|EFH48167.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 152/174 (87%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++   RR +CT+V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA
Sbjct: 1   MLSMLSRRCYCTSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+ 
Sbjct: 61  IMGQGFVDDLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQE 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
            GGHG HNGLKSVMN+FRGNREFARLRIGIG PPGQMDPKAFLLQKF+  ARER
Sbjct: 121 KGGHGCHNGLKSVMNHFRGNREFARLRIGIGNPPGQMDPKAFLLQKFSVPARER 174

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79517018|ref|NP_197484.4| Peptidyl-tRNA hydrolase [Arabidopsis thaliana] gi|75291353|sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precursor gi|44681342|gb|AAS47611.1| At5g19830 [Arabidopsis thaliana] gi|45773870|gb|AAS76739.1| At5g19830 [Arabidopsis thaliana] gi|110735763|dbj|BAE99859.1| peptidyl tRNA hydrolases-like putative protein [Arabidopsis thaliana] gi|332005370|gb|AED92753.1| Peptidyl-tRNA hydrolase [Arabidopsis thaliana]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/175 (80%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61  AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
             GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER
Sbjct: 121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARER 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.961	0.794	0.737	1.2e-65
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.889	0.559	0.549	3e-46
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.872	0.658	0.556	1.2e-44
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.872	0.632	0.563	2.2e-43
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.828	0.806	0.423	7.3e-27
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.850	0.823	0.403	3.2e-26
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.867	0.821	0.397	1.2e-24
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.740	0.708	0.407	2.6e-24
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.740	0.694	0.414	1.6e-22
TIGR_CMR|SPO_0811	239	SPO_0811 "peptidyl-tRNA hydrol	0.872	0.661	0.361	1.7e-20

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 129/175 (73%), Positives = 142/175 (81%)

Query:     2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
             +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct:     1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query:    61 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXX 120
             A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV    
Sbjct:    61 AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query:   121 XXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
                        KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER
Sbjct:   121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARER 175

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 89/162 (54%), Positives = 122/162 (75%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++ 
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNN 179
              +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E EL++
Sbjct:   214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQE-ELDH 254

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 88/158 (55%), Positives = 109/158 (68%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct:    45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM +
Sbjct:   105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
               G R F RL IGIG+PPG MD KAFLLQKF+ + +++
Sbjct:   165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQ 202

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 89/158 (56%), Positives = 106/158 (67%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct:    55 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  +
Sbjct:   115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 174

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
               G R + RL IGIG PPG MD KAFLLQKF+ + R++
Sbjct:   175 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQ 212

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 64/151 (42%), Positives = 86/151 (56%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121

Query:   140 GNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
             G +EF R+R+GI RP   M    ++L +F +
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTS 152

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 63/156 (40%), Positives = 89/156 (57%)

Query:    19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
             ++  GLGNPG +Y+ TRHN GF ++D  A+  GI +     K+  G+G +    VLL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:    79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
             QTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++  
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
              G+ E  RL+IGIGRP    D K ++LQ F    RE
Sbjct:   122 -GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAERE 155

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 64/161 (39%), Positives = 84/161 (52%)

Query:    15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
             +A P L VGLGNPG  Y  TRHN+GF + D  A   G      H +  A    G      
Sbjct:     1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKA-HKRSGAEVATGRSAGRS 59

Query:    73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
             ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct:    60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119

Query:   133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
             SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R
Sbjct:   120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAER 159

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 55/135 (40%), Positives = 76/135 (56%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI- 121

Query:   140 GNREFARLRIGIGRP 154
             G +EF RL+IGIG+P
Sbjct:   122 GTKEFIRLKIGIGKP 136

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/135 (41%), Positives = 72/135 (53%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG KY  TRHN GF ++D  A + G S+        FG+G      +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSG S      ++KLPL   +V HDD+ +P G                +S++    
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL- 123

Query:   140 GNREFARLRIGIGRP 154
             G   F R+R+GIGRP
Sbjct:   124 GGAGFVRVRVGIGRP 138

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0811 SPO_0811 "peptidyl-tRNA hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 59/163 (36%), Positives = 84/163 (51%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             LFVGLGNPG KY   RHN+GF  +D  AE  G     V  +    +G +G   VLL KP+
Sbjct:     3 LFVGLGNPGAKYARNRHNIGFMALDRIAEDHGFGPWRVKFQGQIAEGRLGREKVLLLKPE 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             T+MN SG+S G    +YKL    + V HD++ L  G                +S+ ++  
Sbjct:    63 TFMNRSGQSVGEAMRFYKLDSTDITVLHDELDLAPGKVKVKAGGGHAGHNGLRSIHDHI- 121

Query:   140 GNREFARLRIGIGRPPGQMDPKA-FLLQKFNAIARERELNNIL 181
                 + R+R+GIG P G+ +  A ++L  F A A E  L ++L
Sbjct:   122 -GAAYDRVRLGIGHP-GRKEAVAGYVLHDF-ARADEDWLEDVL 161

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4J0Q6	PTH_DESRM	3, ., 1, ., 1, ., 2, 9	0.5037	0.7403	0.6504	yes	no
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.4900	0.8287	0.8064	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.8	0.9613	0.7945	yes	no
Q2J5Z1	PTH_FRASC	3, ., 1, ., 1, ., 2, 9	0.4268	0.8950	0.8223	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
C0ZHD7	PTH_BREBN	3, ., 1, ., 1, ., 2, 9	0.4415	0.8453	0.8095	yes	no
A4T6N5	PTH_MYCGI	3, ., 1, ., 1, ., 2, 9	0.4588	0.9005	0.8489	yes	no
A1TEG1	PTH_MYCVP	3, ., 1, ., 1, ., 2, 9	0.4497	0.9060	0.8541	yes	no
B2TI10	PTH_CLOBB	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8010	yes	no
Q0RCD6	PTH_FRAAA	3, ., 1, ., 1, ., 2, 9	0.4329	0.8950	0.8223	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.4516	0.8397	0.8085	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.4900	0.8287	0.8064	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.4551	0.8508	0.8235	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.5033	0.8176	0.7872	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.4506	0.8674	0.8440	yes	no
A4IJC9	PTH_GEOTN	3, ., 1, ., 1, ., 2, 9	0.4320	0.8895	0.8655	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.4516	0.8397	0.8085	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8095	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.5033	0.8287	0.8064	yes	no
B1YGP7	PTH_EXIS2	3, ., 1, ., 1, ., 2, 9	0.4534	0.8784	0.8594	yes	no
B2UXS9	PTH_CLOBA	3, ., 1, ., 1, ., 2, 9	0.4230	0.8453	0.8010	yes	no
Q5N9Q7	PTHM_ORYSJ	3, ., 1, ., 1, ., 2, 9	0.6202	0.8729	0.632	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.4900	0.8287	0.8064	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.4487	0.8508	0.8191	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.48	0.8232	0.8010	yes	no
Q899I4	PTH_CLOTE	3, ., 1, ., 1, ., 2, 9	0.4562	0.8508	0.8191	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.4900	0.8287	0.8064	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.991
3rd Layer	3.1.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024798001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (217 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018977001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)	•						•		0.795
	GSVIVG00015830001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)	•						•		0.791
	GSVIVG00025769001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (365 aa)	•			•			•		0.719
	GSVIVG00020546001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)							•		0.670
	GSVIVG00009701001	SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (251 aa)	•								0.629
	GSVIVG00017183001	RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)							•		0.609
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)	•			•					0.602
	GSVIVG00007283001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)	•						•		0.594
	GSVIVG00002517001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (258 aa)	•								0.575
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•			•					0.544

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-100
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	4e-77
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	2e-71
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	3e-69
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-65
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	6e-55

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  287 bits (737), Expect = e-100
 Identities = 108/159 (67%), Positives = 129/159 (81%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
            PWL  GLGNPG+KYKGTRHNVGFEM+D  AE++GI+MNT+  K+  G G +GD PVLLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQTYMN SGES GPLAAYYK+PL  +LV +DDM LP GVLRL+  GGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175
           +  G+REF RL IGIG PPG+MDP+AFLLQKF++  RE+
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQ 159

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  227 bits (581), Expect = 4e-77
 Identities = 83/151 (54%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
           L VGLGNPG KY+ TRHNVGF ++DA AE  G+S      K   G+G +G   VLL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 80  TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR 139
           TYMNLSGE+   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ +  
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 140 GNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
           G  +F RLRIGIGRPP +MD   ++L KF+ 
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSK 150

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  213 bits (545), Expect = 2e-71
 Identities = 79/152 (51%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY+ TRHNVGF +ID  AE  G+S+      K    +G +    V+L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
           QTYMNLSGE+   +A +YK+P   +LV HDD+ LP G LRL+  GG GGHNGLKS++ + 
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
            G  +F RLRIGIGRPP + D   ++L KF+ 
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSP 151

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  208 bits (531), Expect = 3e-69
 Identities = 72/154 (46%), Positives = 97/154 (62%), Gaps = 3/154 (1%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 76
             L VGLGNPG +Y  TRHN+GF ++D  A   G S+      K    +G +    V+L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQTYMNLSG++   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
           +  G ++F RLRIGIGRP  +     ++L KF+ 
Sbjct: 122 HL-GTQDFWRLRIGIGRPDKK-KVVDYVLGKFSK 153

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  198 bits (506), Expect = 2e-65
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 2/153 (1%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIS-MNTVHCKATFGQGFVGDAPVLLA 76
             L VGLGNPG KY  TRHNVGF ++D  A    +S            +G +    V+L 
Sbjct: 2   MKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILL 61

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KP TYMNLSG++ G LA++YK+    +LV HD++ LP G +RL+  GG GGHNGLKS++ 
Sbjct: 62  KPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIA 121

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFN 169
           +  G   F RLRIGIGRP    D   ++L KF+
Sbjct: 122 HL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFS 153

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  171 bits (436), Expect = 6e-55
 Identities = 72/150 (48%), Positives = 94/150 (62%), Gaps = 2/150 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY GTRHN GF ++D  A   G+S+ T         +G +    V+L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            TYMNLSGE+   LA++Y++    +LV HD++ LP G +RL+  GG GGHNGLKS++++ 
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKF 168
            G   F RLRIGIG P G      F+L KF
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKF 151

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-72  Score=462.27  Aligned_cols=162  Identities=46%  Similarity=0.787  Sum_probs=156.3

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCC-CccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~-~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      |+|||||||||++|+.||||||||++|.||+++++++ +.++|.+.++++.+.+++++|+||+||||+||++|.++++||
T Consensus         2 ~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~fy   81 (190)
T COG0193           2 MKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASFY   81 (190)
T ss_pred             cEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHHh
Confidence            7899999999999999999999999999999999998 567888999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERE  176 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l  176 (181)
                      ++++++++|||||||+|+|++|+|.+||+|||||||||+++| ||++|+|||||||||..+++|++|||++|+++|++.|
T Consensus        82 ~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~l  160 (190)
T COG0193          82 KIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELL  160 (190)
T ss_pred             CCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5999999999999998888999999999999999999


Q ss_pred             Hhhh
Q 030200          177 LNNI  180 (181)
Q Consensus       177 ~~~~  180 (181)
                      ++++
T Consensus       161 ~~~~  164 (190)
T COG0193         161 DKAI  164 (190)
T ss_pred             HHHH
Confidence            8875

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=3e-72  Score=461.96  Aligned_cols=164  Identities=66%  Similarity=1.154  Sum_probs=155.7

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      .|+|||||||||++|++|||||||+++|.||+++++++++.++.+.++++.+.+++++|+||+||||+||+||+++++||
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~y   80 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYY   80 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHh
Confidence            47899999999999999999999999999999999987666788899999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERE  176 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l  176 (181)
                      ++++++++|||||||+|+|++|+|.+||++||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l  160 (191)
T cd02406          81 KVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQI  160 (191)
T ss_pred             CCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999955789999999999997767899999999999999999


Q ss_pred             Hhhh
Q 030200          177 LNNI  180 (181)
Q Consensus       177 ~~~~  180 (181)
                      ++++
T Consensus       161 ~~~~  164 (191)
T cd02406         161 DTAL  164 (191)
T ss_pred             HHHH
Confidence            8764

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=3.4e-71  Score=448.92  Aligned_cols=160  Identities=54%  Similarity=0.948  Sum_probs=153.4

Q ss_pred             eEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 030200           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (181)
Q Consensus        20 LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~ki~   99 (181)
                      |||||||||++|++|||||||+++|+||++++.++.+.++.+.++++.+.+++++|+||+||||+||++|++++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999988776778899999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHHHhh
Q 030200          100 LNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNN  179 (181)
Q Consensus       100 ~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l~~~  179 (181)
                      +++++|||||||+|+|++|+|++||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.++++
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 6899999999999998777899999999999999999876


Q ss_pred             h
Q 030200          180 I  180 (181)
Q Consensus       180 ~  180 (181)
                      +
T Consensus       160 ~  160 (171)
T cd00462         160 I  160 (171)
T ss_pred             H
Confidence            5

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=1.1e-70  Score=451.71  Aligned_cols=162  Identities=44%  Similarity=0.762  Sum_probs=153.5

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      |+|||||||||++|+.|||||||+++|+||++++.++. +.++.+.+++..+.+++++|+||+||||+||++|++++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            68999999999999999999999999999999998876 34577888888898999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERE  176 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l  176 (181)
                      ++++++++|||||||+|+|++|+|++||++||||||||+++| ||++|+|||||||||+++.++++|||++|+++|++.+
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 6899999999999998767899999999999999999


Q ss_pred             Hhhh
Q 030200          177 LNNI  180 (181)
Q Consensus       177 ~~~~  180 (181)
                      ++++
T Consensus       160 ~~~i  163 (188)
T TIGR00447       160 EKAL  163 (188)
T ss_pred             HHHH
Confidence            8865

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=5.1e-69  Score=442.21  Aligned_cols=161  Identities=46%  Similarity=0.808  Sum_probs=151.9

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      |+|||||||||++|++|||||||+++|.||++++..+. ..++.+.+++..+.+++++|+||+||||+||++|++++++|
T Consensus         2 ~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   81 (189)
T PRK05426          2 MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFY   81 (189)
T ss_pred             cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            78999999999999999999999999999999887664 45677899999998899999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERE  176 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l  176 (181)
                      ++++++++|||||+|+|+|++|+|.+||++||||||||+++| ||++|+|||||||||+ ..++++|||++|+++|++.+
T Consensus        82 ~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~l  159 (189)
T PRK05426         82 KIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQELL  159 (189)
T ss_pred             CCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5889999999999997 56799999999999999999


Q ss_pred             Hhhh
Q 030200          177 LNNI  180 (181)
Q Consensus       177 ~~~~  180 (181)
                      ++++
T Consensus       160 ~~~~  163 (189)
T PRK05426        160 DKAI  163 (189)
T ss_pred             HHHH
Confidence            8765

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=1.6e-67  Score=431.18  Aligned_cols=160  Identities=48%  Similarity=0.860  Sum_probs=138.9

Q ss_pred             eEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccc-cceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 030200           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   98 (181)
Q Consensus        20 LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~-~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~ki   98 (181)
                      |||||||||++|++|||||||+++|+||++++.++.+.+ +.+.++++.+.+++++|+||+||||+||++|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999999886544 7788888889999999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHHHh
Q 030200           99 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELN  178 (181)
Q Consensus        99 ~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l~~  178 (181)
                      ++++++|||||+|+|+|++|+|++||++||||||||+++| +|++|+|||||||||++..++++|||++|+++|++.|++
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 589999999999999877789999999999999999988


Q ss_pred             hh
Q 030200          179 NI  180 (181)
Q Consensus       179 ~~  180 (181)
                      ++
T Consensus       160 ~~  161 (184)
T PF01195_consen  160 VI  161 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-55  Score=359.49  Aligned_cols=162  Identities=57%  Similarity=1.027  Sum_probs=151.0

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      .+|+|+||||||++|..||||+||.++|.||+++++...+...++..+-+.+.+.++++++|++|||.||++|.+++..|
T Consensus        38 k~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y  117 (224)
T KOG2255|consen   38 KPWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALY  117 (224)
T ss_pred             CceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhh
Confidence            46999999999999999999999999999999999986655555666777888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHH-H
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE-R  175 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~-~  175 (181)
                      +++.++++||||||++|+|++|+|++||++||||+||+++++.+...|+||+||||||++++|+.+|||++|++.|++ .
T Consensus       118 ~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~  197 (224)
T KOG2255|consen  118 KIPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKEL  197 (224)
T ss_pred             cchheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHH
Confidence            999999999999999999999999999999999999999999777799999999999999999999999999999999 4


Q ss_pred             HHh
Q 030200          176 ELN  178 (181)
Q Consensus       176 l~~  178 (181)
                      |+.
T Consensus       198 Let  200 (224)
T KOG2255|consen  198 LET  200 (224)
T ss_pred             HHH
Confidence            443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		3e-48
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		2e-47
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		2e-47
2lgj_A	191	Solution Structure Of Mspth Length = 191		2e-27
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-26
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		1e-25
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-25
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		8e-19
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		2e-17
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		2e-17
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		7e-17
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		8e-17
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		8e-17
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		1e-16
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		8e-14

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 109/156 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
             G REF RL IGIG PPG+MDP+AFLLQKF++  R
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 108/156 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
             G REF RL IGIG PPG+MDP+AFLLQKF++  R
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 108/156 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 5   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 65  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 124
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
             G REF RL IGIG PPG+MDP+AFLLQKF++  R
Sbjct: 125 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 160

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTS 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
           V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G                +
Sbjct: 60  VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
           SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAER 159

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTT 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
           V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  G                +
Sbjct: 60  VVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
           SV +   G + F R+RIG+GRPPG+ DP AF+L+ F +  R
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAER 159

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
           V+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAER 159

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173
           V+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAER 159

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF ++D  A   G ++ +       + +  +    V L +P
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
           QTYMN SG+S   LA ++K+  N +LV HD++ LP G                K +  + 
Sbjct: 85  QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL 144
Query: 139 RGNREFARLRIGIGRP 154
             ++++ RLRIGIG P
Sbjct: 145 -SSQQYWRLRIGIGHP 159

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  F  G VG        V 
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 61
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + +
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121
Query: 135 MNNFRGNREFARLRIGIGRP 154
           +        F RLR+GIG P
Sbjct: 122 IAQLGNQNSFHRLRLGIGHP 141

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  F  G VG        V 
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 67
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + +
Sbjct: 68  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 127
Query: 135 MNNFRGNREFARLRIGIGRP 154
           +        F RLR+GIG P
Sbjct: 128 IAQLGNQNSFHRLRLGIGHP 147

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF  ++  A+  GI++ N        G+G +    V L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
            TYMN SG+S  P + +Y++    +L+ HD++ +  GV               + ++ + 
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 139 RGNREFARLRIGIGRP 154
             N  F RLRIGIG P
Sbjct: 126 GPN--FHRLRIGIGHP 139

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 60
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 61  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
           +    N  F RLRIGIG P  +     F+L K
Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 152

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 64
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 65  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 124
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
           +    N  F RLRIGIG P  +     F+L K
Sbjct: 125 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 156

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 81
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 82  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 141
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQK 167
           +    N  F RLRIGIG P  +     F+L K
Sbjct: 142 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 173

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLA 76
           + +GLGN G +Y+ TRHNVG   I   A+    S ++   ++C     +  +    V+L 
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVLV 82
Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 136
            P TYMN SG +   +A +YK+    +LV HD++ +  G                +S+ N
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI-N 141
Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL 181
              G  ++ RLRIGIG P  +     ++L    +IA+++++++ +
Sbjct: 142 QHLGTNDYLRLRIGIGHPGHKSKVANYVLSN-PSIAQKKDIDSAI 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	1e-86
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	2e-81
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	7e-79
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	3e-76
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	2e-74
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	9e-72
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	1e-71

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  252 bits (645), Expect = 1e-86
 Identities = 96/157 (61%), Positives = 121/157 (77%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
             G REF RL IGIG PPG+MDP+AFLLQKF++  R 
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV 173

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  238 bits (609), Expect = 2e-81
 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 2/160 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVL 74
           A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++
Sbjct: 2   AEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLV 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+  GG GGHNGL+SV
Sbjct: 62  LAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSV 121

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
           +    G ++F R+RIGIGRPPG+ DP AF+L+ F    R 
Sbjct: 122 VAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA 160

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  232 bits (593), Expect = 7e-79
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
               L VGLGNPG +Y  TRHN G   ++  A +QG+S+          G+       V 
Sbjct: 2   TAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVR 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+  GGHGGHNGL+ +
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
           +        F RLR+GIG P        ++L +     +E
Sbjct: 122 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  225 bits (576), Expect = 3e-76
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
              N  F RLRIGIG P  +     F+L K     ++
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK 159

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  221 bits (565), Expect = 2e-74
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
            +  + +GLGN G +Y+ TRHNVG   I   A+    S ++         +  +    V+
Sbjct: 21  PKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVV 80

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           L  P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+  GGHGGHNGL+S+
Sbjct: 81  LVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI 140

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
             +  G  ++ RLRIGIG P  +     ++L   + 
Sbjct: 141 NQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSI 175

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  214 bits (547), Expect = 9e-72
 Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF  ++  A+  GI++          G+G +    V L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           P TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+  GGHGGHNGL+ ++ +
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA 170
                 F RLRIGIG P  +      +L K  +
Sbjct: 125 I--GPNFHRLRIGIGHPGSKERVSGHVLGKAPS 155

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  214 bits (548), Expect = 1e-71
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF ++D  A   G ++         + +  +    V L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+  GG GGHNGLK +  +
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 138 FRGNREFARLRIGIGRPP----------GQMDPKAFLLQKFNA 170
              ++++ RLRIGIG P            + D   F+L+    
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRK 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=4.1e-73  Score=466.62  Aligned_cols=162  Identities=37%  Similarity=0.635  Sum_probs=154.1

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      |+|||||||||++|+.||||||||++|+||++++.+++ +.++.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            78999999999999999999999999999999999986 55788999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~g-t~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      |++++++||||||||||+|++|+|.+||++||||||||+++| | |++|+|||||||||.++.++++|||++|+++|++.
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999 6 89999999999999644568999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       161 l~~~i  165 (193)
T 2pth_A          161 IDEAI  165 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=8e-73  Score=468.80  Aligned_cols=163  Identities=34%  Similarity=0.612  Sum_probs=156.3

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   95 (181)
                      .|+|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (207)
T 3nea_A           22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF  101 (207)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence            47999999999999999999999999999999999998765 68899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      ||++++++||||||||||+|++|+|++||++||||||||+++| ||+||+|||||||||+++.++++|||++|+++|++.
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~  180 (207)
T 3nea_A          102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD  180 (207)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 599999999999999877789999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       181 l~~~i  185 (207)
T 3nea_A          181 IDSAI  185 (207)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.1e-73  Score=466.66  Aligned_cols=163  Identities=44%  Similarity=0.823  Sum_probs=154.5

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   95 (181)
                      .|+|||||||||++|+.|||||||+++|+||++++.++.+ .++.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus         3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~   82 (191)
T 2z2i_A            3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF   82 (191)
T ss_dssp             SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred             ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence            4799999999999999999999999999999999998865 468899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      ||++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  161 (191)
T 2z2i_A           83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAE  161 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTT
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999655679999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       162 l~~~i  166 (191)
T 2z2i_A          162 VPTIC  166 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.4e-72  Score=466.87  Aligned_cols=167  Identities=57%  Similarity=1.062  Sum_probs=157.2

Q ss_pred             CCCCCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 030200           14 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   93 (181)
Q Consensus        14 ~~~~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~   93 (181)
                      ++..++|||||||||++|+.|||||||+++|+||+++++++++.++.+.++++.+.+++++|+||+||||+||++|++++
T Consensus        13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            45678999999999999999999999999999999999998877889999999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHH
Q 030200           94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR  173 (181)
Q Consensus        94 ~~~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~  173 (181)
                      +|||++++++||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence            99999999999999999999999999999999999999999999933899999999999997556799999999999999


Q ss_pred             HHHHhhh
Q 030200          174 ERELNNI  180 (181)
Q Consensus       174 ~~l~~~~  180 (181)
                      +.|++++
T Consensus       173 ~~l~~~i  179 (205)
T 1ryb_A          173 VQIDTAL  179 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=6.4e-72  Score=461.22  Aligned_cols=162  Identities=38%  Similarity=0.656  Sum_probs=154.2

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      .-|||||||||++|+.|||||||+++|+||++++.++.+ .+|.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus        10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y   89 (199)
T 4fyj_A           10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   89 (199)
T ss_dssp             CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence            459999999999999999999999999999999998764 4688999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~-~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      +++++++||||||||||+|++|+|++||++||||||||+++| ||+ ||+|||||||||+.+.++++|||++|+++|++.
T Consensus        90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  168 (199)
T 4fyj_A           90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL  168 (199)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred             CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHH
Confidence            999999999999999999999999999999999999999999 587 999999999999877789999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       169 l~~~i  173 (199)
T 4fyj_A          169 LDTSI  173 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=2.1e-71  Score=464.40  Aligned_cols=165  Identities=38%  Similarity=0.639  Sum_probs=152.5

Q ss_pred             CCCCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 030200           15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   93 (181)
Q Consensus        15 ~~~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~   93 (181)
                      +..|+|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||++|++++
T Consensus        20 ~m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~   99 (222)
T 3v2i_A           20 GSMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALA   99 (222)
T ss_dssp             --CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHH
Confidence            3457899999999999999999999999999999999998653 688999999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCC----------CCCCCcccc
Q 030200           94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAF  163 (181)
Q Consensus        94 ~~~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP----------~~~~~~~~y  163 (181)
                      +|||++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||          +.+.++++|
T Consensus       100 ~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~y  178 (222)
T 3v2i_A          100 HFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANF  178 (222)
T ss_dssp             HHHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHH
T ss_pred             HHhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHH
Confidence            999999999999999999999999999999999999999999999 689999999999999          555688999


Q ss_pred             cCCCCCHHHHHHHHhhh
Q 030200          164 LLQKFNAIARERELNNI  180 (181)
Q Consensus       164 VL~~f~~~E~~~l~~~~  180 (181)
                      ||++|+++|++.|++++
T Consensus       179 VL~~fs~~E~~~l~~~i  195 (222)
T 3v2i_A          179 VLKPPRKEEQDVIDAAI  195 (222)
T ss_dssp             TTSCCCHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHH
Confidence            99999999999998765

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=3.7e-71  Score=455.01  Aligned_cols=162  Identities=38%  Similarity=0.683  Sum_probs=154.0

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   95 (181)
                      .++|||||||||++|++|||||||+++|+||++++.+++. .++.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus         3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~   82 (193)
T 4hoy_A            3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF   82 (193)
T ss_dssp             CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence            3579999999999999999999999999999999999854 477889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      |+++++++||||||||||+|++|+|++||++||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.
T Consensus        83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 4hoy_A           83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL  160 (193)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred             cCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 56 799999999999988889999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       161 l~~~i  165 (193)
T 4hoy_A          161 MDGAI  165 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=4.1e-73  Score=466.83  Aligned_cols=162  Identities=38%  Similarity=0.652  Sum_probs=152.8

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~   96 (181)
                      |+|||||||||++|+.|||||||+++|+||++++.++. +.++.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy   83 (194)
T 4fno_A            4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   83 (194)
Confidence            57999999999999999999999999999999999876 45688889988888899999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        97 ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt-~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      ||+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||.++.++++|||++|+++|++.
T Consensus        84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  162 (194)
T 4fno_A           84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL  162 (194)
Confidence            999999999999999999999999999999999999999999 58 8999999999999645579999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       163 l~~~i  167 (194)
T 4fno_A          163 LDTSI  167 (194)
Confidence            98765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	2e-48
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	1e-41

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  154 bits (389), Expect = 2e-48
 Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 1/164 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 122

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERELNNIL 181
             G REF RL IGIG PPG+MDP+AFLLQKF++  R  +++  L
Sbjct: 123 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV-QIDTAL 165

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (344), Expect = 1e-41
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKP 78
           L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++  
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174
             N  F RLRIGIG P  +     F+L K     ++
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=9e-70  Score=444.18  Aligned_cols=163  Identities=59%  Similarity=1.097  Sum_probs=156.3

Q ss_pred             CeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 030200           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   97 (181)
Q Consensus        18 ~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~~k   97 (181)
                      +||||||||||++|++|||||||+++|.||++++++++..++.+.++...+++++++|+||+||||+||++|++++++|+
T Consensus         3 p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~~   82 (191)
T d1ryba_           3 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ   82 (191)
T ss_dssp             CEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred             ceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhhc
Confidence            69999999999999999999999999999999999988778888999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHHHH
Q 030200           98 LPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAREREL  177 (181)
Q Consensus        98 i~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~l~  177 (181)
                      +++++++|||||+|+|+|++|+|.+||++||||||||+++|+++++|+|||||||||+++.++++|||++|+++|++.++
T Consensus        83 i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l~  162 (191)
T d1ryba_          83 VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQID  162 (191)
T ss_dssp             CCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHH
T ss_pred             cCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999667889999999999988789999999999999999998


Q ss_pred             hhh
Q 030200          178 NNI  180 (181)
Q Consensus       178 ~~~  180 (181)
                      +++
T Consensus       163 ~~~  165 (191)
T d1ryba_         163 TAL  165 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-68  Score=436.93  Aligned_cols=164  Identities=36%  Similarity=0.613  Sum_probs=153.7

Q ss_pred             CCeeEEEecCCCCCCCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 030200           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (181)
Q Consensus        17 ~~~LivGLGNPg~~Y~~TRHNvG~~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   95 (181)
                      .|+|||||||||++|++|||||||+++|.||++++.+++. .++.+.++.....+++++|+||+||||+||++|++++++
T Consensus         1 ~mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   80 (193)
T d2ptha_           1 TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF   80 (193)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CEEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHH
Confidence            3789999999999999999999999999999999998764 456778888899999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEcccCCCCCCCcccccCCCCCHHHHHH
Q 030200           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (181)
Q Consensus        96 ~ki~~~~ilVvhDdldl~~G~vrlk~~Gs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrP~~~~~~~~yVL~~f~~~E~~~  175 (181)
                      |++++++++|||||+|+|+|++|+|++||++||||||||+++||.+++|+|||||||||+++.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~  160 (193)
T d2ptha_          81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999995345899999999999877789999999999999999


Q ss_pred             HHhhh
Q 030200          176 ELNNI  180 (181)
Q Consensus       176 l~~~~  180 (181)
                      |++++
T Consensus       161 l~~~i  165 (193)
T d2ptha_         161 IDEAI  165 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865