Citrus Sinensis ID: 030220
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | 2.2.26 [Sep-21-2011] | |||||||
| P68209 | 347 | Succinyl-CoA ligase [ADP- | yes | no | 0.834 | 0.435 | 0.737 | 1e-57 | |
| Q8GTQ9 | 332 | Succinyl-CoA ligase [ADP- | N/A | no | 0.784 | 0.427 | 0.737 | 2e-57 | |
| Q8LAD2 | 341 | Succinyl-CoA ligase [ADP- | no | no | 0.828 | 0.439 | 0.705 | 3e-54 | |
| Q6DQL1 | 337 | Succinyl-CoA ligase [ADP- | N/A | no | 0.806 | 0.433 | 0.751 | 3e-51 | |
| Q6ZL94 | 331 | Probable succinyl-CoA lig | yes | no | 0.707 | 0.386 | 0.868 | 2e-50 | |
| Q9WUM5 | 346 | Succinyl-CoA ligase [ADP/ | yes | no | 0.618 | 0.323 | 0.714 | 1e-43 | |
| P36967 | 315 | Succinyl-CoA ligase [ADP/ | yes | no | 0.651 | 0.374 | 0.669 | 8e-43 | |
| Q9YGD2 | 306 | Succinyl-CoA ligase subun | N/A | no | 0.618 | 0.366 | 0.687 | 1e-41 | |
| Q1RH56 | 291 | Succinyl-CoA ligase [ADP- | yes | no | 0.580 | 0.360 | 0.704 | 4e-39 | |
| Q4ULQ8 | 292 | Succinyl-CoA ligase [ADP- | yes | no | 0.580 | 0.359 | 0.695 | 7e-38 |
| >sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 130/160 (81%), Gaps = 9/160 (5%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKA
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKA 115
Query: 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 116 NASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5 |
| >sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Solanum lycopersicum GN=SCOA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 123/156 (78%), Gaps = 14/156 (8%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+V EAKAETKANASV
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASV 106
Query: 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
IYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 107 IYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 124/156 (79%), Gaps = 6/156 (3%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPPA-AVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASV
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASV 114
Query: 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
IYVP PFAAAAIME + AELDL+VCITEGIPQHDMV
Sbjct: 115 IYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/157 (75%), Positives = 128/157 (81%), Gaps = 11/157 (7%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 119
RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+VAEAK ETKANAS
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANAS 110
Query: 120 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
V+YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV
Sbjct: 111 VVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/129 (86%), Positives = 120/129 (93%), Gaps = 1/129 (0%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVG
Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVG 71
Query: 88 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147
GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT
Sbjct: 72 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 131
Query: 148 EGIPQHDMV 156
EGIPQHDMV
Sbjct: 132 EGIPQHDMV 140
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVF
Sbjct: 42 SYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 98/118 (83%)
Query: 39 SRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 98
+RN+G ++ P+V ++K+T+VICQG TG GTFH++QAIEYGT MVGGV+P KGG +H
Sbjct: 8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKH 67
Query: 99 LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
L LPVFN+V EAK T ANA+VIYVPPP AAAAI EA++AE++LVVCITEGIPQ DMV
Sbjct: 68 LDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMV 125
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment) OS=Columba livia GN=SUCLG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S +AS +++ KNT+VICQG TGK GTFH++QA++YGT +VGG++P KGG HLGLPVF
Sbjct: 2 SYSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLVGGISPGKGGKTHLGLPVF 61
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NSV EAK +T A+A+VIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 62 NSVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMV 113
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Columba livia (taxid: 8932) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 89/105 (84%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ V+K T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG HL LP++N+V EAK
Sbjct: 2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPPPFAA +I+EA++A +++VVCITEGIP DMV
Sbjct: 62 AKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMV 106
|
Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+N+V EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A+T ANASVIYVPP FAA +I+EA++AE+++VVCITEGIP DMV
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMV 106
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| 409972123 | 362 | uncharacterized protein, partial [Phleum | 0.707 | 0.353 | 0.882 | 4e-56 | |
| 409972239 | 357 | uncharacterized protein, partial [Phleum | 0.707 | 0.358 | 0.882 | 5e-56 | |
| 225465670 | 329 | PREDICTED: succinyl-CoA ligase [ADP-form | 0.685 | 0.376 | 0.844 | 6e-56 | |
| 297806865 | 347 | hypothetical protein ARALYDRAFT_487662 [ | 0.834 | 0.435 | 0.737 | 6e-56 | |
| 302761178 | 150 | hypothetical protein SELMODRAFT_405593 [ | 0.674 | 0.813 | 0.862 | 7e-56 | |
| 15241592 | 347 | Succinyl-CoA ligase [GDP-forming] subuni | 0.834 | 0.435 | 0.737 | 7e-56 | |
| 350537045 | 332 | succinyl-CoA ligase [ADP-forming] subuni | 0.784 | 0.427 | 0.737 | 8e-56 | |
| 242046092 | 332 | hypothetical protein SORBIDRAFT_02g03742 | 0.707 | 0.385 | 0.860 | 8e-56 | |
| 409972341 | 302 | uncharacterized protein, partial [Phleum | 0.613 | 0.367 | 0.954 | 1e-55 | |
| 302768983 | 150 | hypothetical protein SELMODRAFT_408824 [ | 0.674 | 0.813 | 0.862 | 2e-55 |
| >gi|409972123|gb|JAA00265.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 119/128 (92%)
Query: 29 LSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88
L S+A+ HSR Y ++AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGG
Sbjct: 44 LGSAASRFLHSRGYAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGG 103
Query: 89 VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148
VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCITE
Sbjct: 104 VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITE 163
Query: 149 GIPQHDMV 156
GIPQHDMV
Sbjct: 164 GIPQHDMV 171
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|409972239|gb|JAA00323.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 119/128 (92%)
Query: 29 LSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88
L S+A+ HSR Y ++AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGG
Sbjct: 39 LGSAASRFLHSRGYAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGG 98
Query: 89 VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148
VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCITE
Sbjct: 99 VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITE 158
Query: 149 GIPQHDMV 156
GIPQHDMV
Sbjct: 159 GIPQHDMV 166
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465670|ref|XP_002271746.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [Vitis vinifera] gi|296085314|emb|CBI29046.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/129 (84%), Positives = 117/129 (90%), Gaps = 5/129 (3%)
Query: 28 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87
R+ S AP SR+ G++A PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG
Sbjct: 15 RIKSPLAPP--SRHLGTTAP---PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 69
Query: 88 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147
GVTPKKGG EHLGLP+FN+VAEAKAET+ANASVIYVPPPFAAAAIMEA+EAELDLVVCIT
Sbjct: 70 GVTPKKGGMEHLGLPIFNTVAEAKAETRANASVIYVPPPFAAAAIMEAVEAELDLVVCIT 129
Query: 148 EGIPQHDMV 156
EGIPQHDMV
Sbjct: 130 EGIPQHDMV 138
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|297806865|ref|XP_002871316.1| hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] gi|297317153|gb|EFH47575.1| hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 129/160 (80%), Gaps = 9/160 (5%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ S HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASD---PHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKA
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKA 115
Query: 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 116 NASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302761178|ref|XP_002964011.1| hypothetical protein SELMODRAFT_405593 [Selaginella moellendorffii] gi|300167740|gb|EFJ34344.1| hypothetical protein SELMODRAFT_405593 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/124 (86%), Positives = 114/124 (91%), Gaps = 2/124 (1%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91
S++ + R +GSSA S PAVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMVGGVTP
Sbjct: 15 SSSAGSQRRGFGSSA--STPAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVGGVTP 72
Query: 92 KKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151
KKGGTEHLGLPVFNSV EAKAETKANA+VIYVPP FAAAAIMEA+EAELDLVVCITEGIP
Sbjct: 73 KKGGTEHLGLPVFNSVHEAKAETKANATVIYVPPKFAAAAIMEAVEAELDLVVCITEGIP 132
Query: 152 QHDM 155
QHDM
Sbjct: 133 QHDM 136
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241592|ref|NP_196447.1| Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] gi|57014135|sp|P68209.1|SUCA1_ARATH RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial; AltName: Full=Succinyl-CoA synthetase subunit alpha-1; Short=SCS-alpha-1; Flags: Precursor gi|3660467|emb|CAA05023.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|10178272|emb|CAC08330.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|18252215|gb|AAL61940.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|21387057|gb|AAM47932.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|21536557|gb|AAM60889.1| succinyl-CoA-ligase alpha subunit [Arabidopsis thaliana] gi|332003896|gb|AED91279.1| Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 130/160 (81%), Gaps = 9/160 (5%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ A+ HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSF---ASDPHPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKA
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKA 115
Query: 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
NASVIYVP PFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 116 NASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|350537045|ref|NP_001234277.1| succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [Solanum lycopersicum] gi|75150501|sp|Q8GTQ9.1|SUCA1_SOLLC RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial; Short=SlSCoALalpha1; Flags: Precursor gi|27357175|gb|AAN86619.1| succinyl-CoA ligase alpha 1 subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 123/156 (78%), Gaps = 14/156 (8%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+V EAKAETKANASV
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASV 106
Query: 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
IYVPPPFAAAAIME +EAELDL+VCITEGIPQHDMV
Sbjct: 107 IYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|242046092|ref|XP_002460917.1| hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor] gi|241924294|gb|EER97438.1| hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/129 (86%), Positives = 120/129 (93%), Gaps = 1/129 (0%)
Query: 29 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87
L S+A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVG
Sbjct: 13 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVG 72
Query: 88 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147
GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM+AELDLVVCIT
Sbjct: 73 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMDAELDLVVCIT 132
Query: 148 EGIPQHDMV 156
EGIPQHDMV
Sbjct: 133 EGIPQHDMV 141
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|409972341|gb|JAA00374.1| uncharacterized protein, partial [Phleum pratense] | Back alignment and taxonomy information |
|---|
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/111 (95%), Positives = 108/111 (97%)
Query: 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN 105
AAA PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFN
Sbjct: 1 AAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFN 60
Query: 106 SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
SVAEAKAETKANASVIYVPPPFAAAAIMEA+EAELDLVVCITEGIPQHDMV
Sbjct: 61 SVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMV 111
|
Source: Phleum pratense Species: Phleum pratense Genus: Phleum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302768983|ref|XP_002967911.1| hypothetical protein SELMODRAFT_408824 [Selaginella moellendorffii] gi|300164649|gb|EFJ31258.1| hypothetical protein SELMODRAFT_408824 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/124 (86%), Positives = 113/124 (91%), Gaps = 2/124 (1%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91
S + + R +GSSA S PAVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMVGGVTP
Sbjct: 15 SNSAGSQRRGFGSSA--STPAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVGGVTP 72
Query: 92 KKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151
KKGGTEHLGLPVFNSV EAKAETKANA+VIYVPP FAAAAIMEA+EAELDLVVCITEGIP
Sbjct: 73 KKGGTEHLGLPVFNSVHEAKAETKANATVIYVPPKFAAAAIMEAVEAELDLVVCITEGIP 132
Query: 152 QHDM 155
QHDM
Sbjct: 133 QHDM 136
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| UNIPROTKB|Q6DQL1 | 337 | Q6DQL1 "Succinyl-CoA ligase [A | 0.806 | 0.433 | 0.675 | 3.7e-48 | |
| TAIR|locus:2150773 | 347 | AT5G08300 [Arabidopsis thalian | 0.834 | 0.435 | 0.675 | 4.7e-48 | |
| UNIPROTKB|Q8GTQ9 | 332 | SCOA "Succinyl-CoA ligase [ADP | 0.784 | 0.427 | 0.673 | 1.4e-46 | |
| TAIR|locus:2166756 | 341 | AT5G23250 [Arabidopsis thalian | 0.828 | 0.439 | 0.647 | 1e-45 | |
| MGI|MGI:1927234 | 346 | Suclg1 "succinate-CoA ligase, | 0.762 | 0.398 | 0.550 | 4.4e-36 | |
| RGD|619821 | 346 | Suclg1 "succinate-CoA ligase, | 0.618 | 0.323 | 0.642 | 7.2e-36 | |
| UNIPROTKB|P53597 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.751 | 0.393 | 0.557 | 1.2e-35 | |
| UNIPROTKB|E2R0Y5 | 346 | SUCLG1 "Uncharacterized protei | 0.834 | 0.436 | 0.529 | 3.1e-35 | |
| UNIPROTKB|F1MZ38 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.762 | 0.398 | 0.550 | 4e-35 | |
| UNIPROTKB|Q58DR8 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.762 | 0.398 | 0.550 | 5.1e-35 |
| UNIPROTKB|Q6DQL1 Q6DQL1 "Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial" [Solanum lycopersicum (taxid:4081)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 106/157 (67%), Positives = 116/157 (73%)
Query: 1 MARQALAKLIGSIGSR-RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNT 59
MARQA +LI ++ ++ PS+ + SA+P H Y S PAVFVDKNT
Sbjct: 1 MARQA-TRLISNLSTKLNPSSPTM--------SASPLWHQYRYFGSPPPP-PAVFVDKNT 50
Query: 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS 119
RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+VAEAK ETKANAS
Sbjct: 51 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANAS 110
Query: 120 VIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
V+YVPPPF LDLVVCITEGIPQHDMV
Sbjct: 111 VVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 147
|
|
| TAIR|locus:2150773 AT5G08300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 108/160 (67%), Positives = 118/160 (73%)
Query: 1 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVD 56
M+RQ +A+LIGS+ S RR ST S + S SR++ S HP AVFVD
Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDP---HPPAAVFVD 55
Query: 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA 116
KNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKA
Sbjct: 56 KNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKA 115
Query: 117 NASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
NASVIYVP PF LDL+VCITEGIPQHDMV
Sbjct: 116 NASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMV 155
|
|
| UNIPROTKB|Q8GTQ9 SCOA "Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial" [Solanum lycopersicum (taxid:4081)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 105/156 (67%), Positives = 112/156 (71%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
MARQA KLI ++ + +SS H R S A+ PAVFVDKNTR
Sbjct: 1 MARQA-TKLIANLSKK---LSSSNPHTRCSEQTV----------WIGAAPPAVFVDKNTR 46
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+V EAKAETKANASV
Sbjct: 47 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASV 106
Query: 121 IYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
IYVPPPF LDL+VCITEGIPQHDMV
Sbjct: 107 IYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMV 142
|
|
| TAIR|locus:2166756 AT5G23250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 101/156 (64%), Positives = 114/156 (73%)
Query: 1 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTR 60
M+RQ + +L+GS+ + S L+S SR++G++ AVFVDKNTR
Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPP-AAVFVDKNTR 54
Query: 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASV 120
VICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASV
Sbjct: 55 VICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASV 114
Query: 121 IYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
IYVP PF LDL+VCITEGIPQHDMV
Sbjct: 115 IYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMV 150
|
|
| MGI|MGI:1927234 Suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 76/138 (55%), Positives = 94/138 (68%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S++S ++ RL S + S AS +++DKNT++ICQG TGK GTFH++QA
Sbjct: 16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX 138
+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF
Sbjct: 76 LEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDA 135
Query: 139 XLDLVVCITEGIPQHDMV 156
+ LVVCITEGIPQ DMV
Sbjct: 136 EIPLVVCITEGIPQQDMV 153
|
|
| RGD|619821 Suclg1 "succinate-CoA ligase, alpha subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 72/112 (64%), Positives = 84/112 (75%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVF
Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVF 101
Query: 105 NSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMV
Sbjct: 102 NTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|P53597 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 78/140 (55%), Positives = 96/140 (68%)
Query: 19 STASSVSHYRLSSSA--APAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTE 76
S +S ++ RL S + P R+ +A+ H ++VDKNT++ICQG TGK GTFH++
Sbjct: 16 SGSSGLAAARLLSRSFLLPQNGIRHCSYTASRQH--LYVDKNTKIICQGFTGKQGTFHSQ 73
Query: 77 QAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXX 136
QA+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF
Sbjct: 74 QALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAI 133
Query: 137 XXXLDLVVCITEGIPQHDMV 156
+ LVVCITEGIPQ DMV
Sbjct: 134 EAEIPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|E2R0Y5 SUCLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 82/155 (52%), Positives = 99/155 (63%)
Query: 2 ARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRV 61
A A A LI ++ S A++ RL S + + S AS ++VDKNT+V
Sbjct: 3 AALAAAALIATMASGSSGLAAA----RLLSRSFLLQQNGIRHCSYIASRKHLYVDKNTKV 58
Query: 62 ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVI 121
ICQG TGK GTFH++QA++YGT++VGG TP KGG HLGLPVFN+V EAK ET A ASVI
Sbjct: 59 ICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGKTHLGLPVFNTVKEAKEETGATASVI 118
Query: 122 YVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 156
YVPPPF + LVVCITEGIPQ DMV
Sbjct: 119 YVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|F1MZ38 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 76/138 (55%), Positives = 92/138 (66%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S +S ++ RL S A + S S ++VD+NT++ICQG TGK GTFH++QA
Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX 138
+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF
Sbjct: 76 LEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIDEAIEA 135
Query: 139 XLDLVVCITEGIPQHDMV 156
+ LVVCITEGIPQ DMV
Sbjct: 136 EVSLVVCITEGIPQQDMV 153
|
|
| UNIPROTKB|Q58DR8 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 76/138 (55%), Positives = 92/138 (66%)
Query: 19 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQA 78
S +S ++ RL S A + S S ++VD+NT++ICQG TGK GTFH++QA
Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQA 75
Query: 79 IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX 138
+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF
Sbjct: 76 LEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEA 135
Query: 139 XLDLVVCITEGIPQHDMV 156
+ LVVCITEGIPQ DMV
Sbjct: 136 EVSLVVCITEGIPQQDMV 153
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P68209 | SUCA1_ARATH | 6, ., 2, ., 1, ., 5 | 0.7375 | 0.8342 | 0.4351 | yes | no |
| Q9WUM5 | SUCA_MOUSE | 6, ., 2, ., 1, ., 5 | 0.7142 | 0.6187 | 0.3236 | yes | no |
| Q1RH56 | SUCD_RICBR | 6, ., 2, ., 1, ., 5 | 0.7047 | 0.5801 | 0.3608 | yes | no |
| P80865 | SUCD_BACSU | 6, ., 2, ., 1, ., 5 | 0.7047 | 0.5801 | 0.35 | yes | no |
| Q6ZL94 | SUCA_ORYSJ | 6, ., 2, ., 1, ., 5 | 0.8682 | 0.7071 | 0.3867 | yes | no |
| P13086 | SUCA_RAT | 6, ., 2, ., 1, ., 5 | 0.7232 | 0.6187 | 0.3236 | yes | no |
| Q94522 | SUCA_DROME | 6, ., 2, ., 1, ., 5 | 0.7254 | 0.5635 | 0.3109 | yes | no |
| P53597 | SUCA_HUMAN | 6, ., 2, ., 1, ., 5 | 0.7321 | 0.6187 | 0.3236 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00031891001 | SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (329 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00028552001 | SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (423 aa) | • | • | • | • | • | • | • | 0.999 | ||
| GSVIVG00024946001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (528 aa) | • | • | • | • | • | 0.996 | ||||
| GSVIVG00020593001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa) | • | • | • | • | 0.990 | |||||
| GSVIVG00004046001 | SubName- Full=Chromosome undetermined scaffold_588, whole genome shotgun sequence; (302 aa) | • | • | • | • | 0.980 | |||||
| GSVIVG00027295001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (225 aa) | • | • | • | • | 0.974 | |||||
| GSVIVG00018534001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (973 aa) | • | • | • | • | 0.969 | |||||
| GSVIVG00018944001 | RecName- Full=Citrate synthase; (466 aa) | • | • | • | 0.812 | ||||||
| GSVIVG00029076001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa) | • | • | • | 0.809 | ||||||
| GSVIVG00023263001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (304 aa) | • | • | 0.808 | |||||||
| GSVIVG00020472001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (461 aa) | • | • | • | 0.801 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| PLN00125 | 300 | PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi | 1e-71 | |
| PRK05678 | 291 | PRK05678, PRK05678, succinyl-CoA synthetase subuni | 1e-69 | |
| PTZ00187 | 317 | PTZ00187, PTZ00187, succinyl-CoA synthetase alpha | 6e-69 | |
| COG0074 | 293 | COG0074, SucD, Succinyl-CoA synthetase, alpha subu | 1e-61 | |
| TIGR01019 | 286 | TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a | 8e-61 | |
| pfam02629 | 96 | pfam02629, CoA_binding, CoA binding domain | 2e-39 | |
| smart00881 | 100 | smart00881, CoA_binding, CoA binding domain | 6e-36 | |
| PLN02522 | 608 | PLN02522, PLN02522, ATP citrate (pro-S)-lyase | 0.002 |
| >gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 1e-71
Identities = 105/110 (95%), Positives = 108/110 (98%)
Query: 47 AASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNS 106
A+ PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN+
Sbjct: 1 ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 60
Query: 107 VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
VAEAKAETKANASVIYVPPPFAAAAI+EAMEAELDLVVCITEGIPQHDMV
Sbjct: 61 VAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMV 110
|
Length = 300 |
| >gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-69
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ ++K+T+VI QGITGK GTFHTEQ + YGT +VGGVTP KGGT LGLPVFN+VAEA
Sbjct: 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T ANASVIYVPPPFAA AI+EA++A +DL+VCITEGIP DM+
Sbjct: 62 EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDML 106
|
Length = 291 |
| >gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 6e-69
Identities = 88/127 (69%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Query: 32 SAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91
AA ++ + ++ S P V+V+KNT+VICQGITGK GTFHTEQAIEYGTKMVGGV P
Sbjct: 3 GAAFMILKVSFRARSSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNP 62
Query: 92 KKGGTEHL--GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149
KK GT HL GLPVF +V EAK T A+ASVIYVPPP AA+AI+EA+EAE+ LVVCITEG
Sbjct: 63 KKAGTTHLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEG 122
Query: 150 IPQHDMV 156
IPQHDMV
Sbjct: 123 IPQHDMV 129
|
Length = 317 |
| >gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 1e-61
Identities = 71/105 (67%), Positives = 86/105 (81%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ ++K+T+VI QGITGK GTFHTEQ + YGTK+VGGVTP KGG LGLPVFN+V EA
Sbjct: 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAV 61
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET ANASVI+VPPPFAA AI+EA++A + LVV ITEGIP DM+
Sbjct: 62 KETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDML 106
|
Length = 293 |
| >gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 8e-61
Identities = 70/104 (67%), Positives = 85/104 (81%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ +DK+T+VI QGITG G+FHTEQ + YGT +VGGVTP KGGT LGLPVF+SV EA
Sbjct: 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVE 60
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET ANASVI+VP PFAA AI EA++A ++L+VCITEGIP HDM+
Sbjct: 61 ETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDML 104
|
This model describes succinyl-CoA synthetase alpha subunits but does not discriminate between GTP-specific and ATP-specific reactions. The model is designated as subfamily rather than equivalog for that reason. ATP citrate lyases appear to form an outgroup [Energy metabolism, TCA cycle]. Length = 286 |
| >gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-39
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 56 DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE 113
DK+T+V G G G +H Q + YG KMV GV P+KGGTE G+PV+ SV E + +
Sbjct: 1 DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEED 60
Query: 114 TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149
T + +VI VP PFA AI E ++A + +V IT G
Sbjct: 61 TGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 96 |
| >gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-36
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 54 FVDKNTRVICQGITGKNGTFHTEQAI---EYGTKMVGGVTPKKGGTEHLGLPVFNSVAEA 110
++ NT V G +G G+F EYGTK VGGV P K G + G+PV++SVAEA
Sbjct: 1 LLNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFVGGVYPGKVGPKVDGVPVYDSVAEA 60
Query: 111 KAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150
ET + +VI+VP A AI EA+EA + +V ITEGI
Sbjct: 61 PEETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 100 |
| >gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 95 GTEHLGLPVFNSVAEA-KAETKANASVIYVPPPFAAAAIMEAMEAE-LDLVVCITEGIPQ 152
G E + +PV S+ A KA A+ + + AAA+ MEA++ + +V I EG+P+
Sbjct: 57 GQEEIAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE 116
Query: 153 HDM--VINFTRVN 163
D +I + R N
Sbjct: 117 SDTKQLIAYARAN 129
|
Length = 608 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 99.96 | |
| KOG1255 | 329 | consensus Succinyl-CoA synthetase, alpha subunit [ | 99.96 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 99.94 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 99.9 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 99.87 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 99.86 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 99.84 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 99.83 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 99.79 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 99.75 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 99.74 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 99.71 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 99.69 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 99.67 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 99.61 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 99.52 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 99.52 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 99.5 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 99.21 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 99.09 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 99.06 | |
| COG1042 | 598 | Acyl-CoA synthetase (NDP forming) [Energy producti | 98.95 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.92 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.91 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.72 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.7 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 98.68 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.64 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 98.56 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 98.46 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 98.4 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 98.32 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.26 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 98.25 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.22 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 98.21 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.21 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 98.18 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 98.18 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.15 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.15 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.15 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 98.14 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.13 | |
| PRK06091 | 555 | membrane protein FdrA; Validated | 98.13 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.12 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.12 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.11 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.1 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 98.1 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 98.07 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.07 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.05 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 98.04 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.02 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.0 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.98 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.86 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.86 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 97.83 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.82 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.82 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 97.8 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.8 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.77 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.76 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.75 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.75 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.73 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.71 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.67 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.66 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.65 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.64 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.63 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.61 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.53 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.52 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 97.52 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 97.5 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.49 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.49 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.48 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.46 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.45 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.44 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.44 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 97.43 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.43 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.42 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.41 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.39 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.39 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.38 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 97.37 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.34 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.33 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 97.33 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.32 | |
| PRK15204 | 476 | undecaprenyl-phosphate galactose phosphotransferas | 97.3 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.3 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.3 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 97.29 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 97.24 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.23 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.23 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 97.23 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 97.23 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 97.23 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.22 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.21 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 97.21 | |
| PLN02712 | 667 | arogenate dehydrogenase | 97.21 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.21 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.18 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.17 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.15 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.12 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.09 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.08 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.08 | |
| PLN02712 | 667 | arogenate dehydrogenase | 97.07 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.07 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.06 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.05 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.04 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 97.04 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 97.03 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 97.03 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.02 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.97 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.97 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.96 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.96 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.93 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.92 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.91 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 96.9 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.87 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.87 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.83 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.83 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.83 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.82 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.81 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.81 | |
| PF13727 | 175 | CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. | 96.77 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 96.75 | |
| TIGR03013 | 442 | EpsB_2 sugar transferase, PEP-CTERM system associa | 96.75 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 96.75 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 96.7 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 96.69 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.68 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.68 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 96.67 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.66 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 96.65 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.65 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.62 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.61 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.6 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.59 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.58 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 96.58 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.58 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.54 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 96.52 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.5 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 96.49 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.47 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.43 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.4 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.35 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.35 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.33 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 96.33 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 96.33 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.32 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 96.31 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 96.3 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 96.26 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.25 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.24 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 96.23 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.19 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.18 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.16 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.14 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.12 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.11 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 96.07 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.07 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 96.06 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 96.06 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 96.05 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.02 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.02 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.98 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 95.95 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 95.91 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.9 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 95.89 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 95.89 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.86 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.83 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 95.83 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 95.82 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.78 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.78 | |
| COG4693 | 361 | PchG Oxidoreductase (NAD-binding), involved in sid | 95.78 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.77 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.74 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.71 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 95.7 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 95.7 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.68 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 95.65 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 95.61 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 95.58 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.56 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 95.54 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.54 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.54 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.52 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.5 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 95.45 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 95.42 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.38 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 95.34 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.29 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 95.2 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.17 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.17 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 95.16 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 95.14 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 95.11 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.1 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.09 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.04 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 95.01 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.0 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.99 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.96 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 94.95 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.95 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 94.9 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 94.87 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.85 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 94.83 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 94.82 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 94.79 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.79 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 94.78 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.75 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 94.75 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.75 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.73 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.71 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.68 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 94.66 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.62 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.6 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.56 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.56 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 94.54 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.54 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 94.53 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 94.52 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.52 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.5 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.5 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.49 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 94.49 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.45 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 94.41 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.38 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 94.37 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.36 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 94.34 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.32 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 94.32 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.29 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.28 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.26 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.24 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 94.23 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.23 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 94.21 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 94.2 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 94.17 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.17 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 94.17 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.16 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.16 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.16 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.14 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.13 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.11 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 94.04 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 94.01 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.99 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.97 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 93.97 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 93.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 93.97 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 93.9 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 93.9 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.87 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 93.86 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.83 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 93.82 | |
| COG1810 | 224 | Uncharacterized protein conserved in archaea [Func | 93.79 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 93.78 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 93.77 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 93.76 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 93.74 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.73 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.67 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 93.65 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 93.64 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.61 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 93.57 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 93.56 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.55 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.55 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.54 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 93.52 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 93.52 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 93.5 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 93.49 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 93.46 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 93.45 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 93.43 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.42 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 93.42 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 93.42 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.38 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.38 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.33 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 93.32 | |
| PLN02477 | 410 | glutamate dehydrogenase | 93.26 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 93.23 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 93.22 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.18 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 93.17 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 93.17 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 93.15 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 93.08 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 93.08 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.05 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 93.05 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.04 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 93.04 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 92.98 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 92.97 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.93 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 92.9 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 92.89 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 92.86 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 92.86 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 92.84 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 92.84 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 92.83 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 92.77 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 92.71 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.68 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 92.67 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 92.66 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 92.62 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 92.61 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.61 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 92.55 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 92.53 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.53 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 92.5 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 92.49 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 92.48 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 92.47 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 92.43 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 92.43 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 92.4 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 92.35 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 92.35 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.35 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 92.33 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 92.32 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 92.31 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 92.31 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 92.23 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 92.2 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 92.19 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 92.17 | |
| COG0565 | 242 | LasT rRNA methylase [Translation, ribosomal struct | 92.17 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 92.16 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 92.13 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 92.08 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.08 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.06 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 92.05 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 92.04 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 92.01 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 92.0 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 91.96 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.96 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.95 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 91.94 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 91.9 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 91.9 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 91.88 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 91.87 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 91.83 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 91.61 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 91.57 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 91.56 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 91.54 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 91.54 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 91.54 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 91.53 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 91.51 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 91.51 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 91.5 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 91.5 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.47 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 91.45 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 91.44 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 91.43 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 91.43 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 91.39 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 91.37 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 91.33 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.3 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 91.28 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 91.28 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 91.23 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 91.23 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.2 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.19 | |
| PRK08643 | 256 | acetoin reductase; Validated | 91.18 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 91.15 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 91.15 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 91.14 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 91.13 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 91.1 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 91.1 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 91.08 | |
| PRK05717 | 255 | oxidoreductase; Validated | 91.08 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 91.08 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 91.07 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 91.02 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.97 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 90.9 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.87 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 90.81 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 90.8 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 90.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 90.78 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 90.75 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.68 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 90.66 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 90.65 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 90.59 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 90.58 | |
| PLN00106 | 323 | malate dehydrogenase | 90.56 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 90.51 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 90.47 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 90.45 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 90.44 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 90.44 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 90.36 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 90.29 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 90.28 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 90.27 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 90.26 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 90.25 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 90.24 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 90.21 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 90.2 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 90.0 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 89.97 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 89.97 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.89 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.89 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 89.88 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 89.81 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 89.8 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 89.76 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 89.67 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.66 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 89.63 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 89.61 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 89.6 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 89.55 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 89.54 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 89.54 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 89.53 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.52 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 89.52 |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=218.61 Aligned_cols=118 Identities=73% Similarity=1.103 Sum_probs=113.5
Q ss_pred cCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEc--CccccccHHHHhhccCCcEEEEee
Q 030220 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 46 ~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~--GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
|++|++++++|+++||+|+|+||+.|+.|++.|++||++|||||+|+++|++++ |+|||++++|+++++++|++++||
T Consensus 17 ~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 17 SSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIYV 96 (317)
T ss_pred HhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEec
Confidence 569999999999999999999999999999999999999999999999999998 999999999999877799999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 124 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
|+.++.++++||+++||+.+|++|+||+++|+.+++++++
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh
Confidence 9999999999999999999999999999999999987764
|
|
| >KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=214.28 Aligned_cols=130 Identities=65% Similarity=0.981 Sum_probs=122.8
Q ss_pred ccccccccccccccCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh
Q 030220 33 AAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112 (181)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~ 112 (181)
+++....|.+.|.|++|+.++++++++||+++|+|||.|.+|.+.+++||+++|+|++|++.|++++|+|||.+++|+.+
T Consensus 13 ~~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~~ 92 (329)
T KOG1255|consen 13 ALSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAKK 92 (329)
T ss_pred hcCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHHH
Confidence 44455556668889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
+.++|..++||||..|..+++|++|+.|++|||+|||+|.||+.++..+.
T Consensus 93 ~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L 142 (329)
T KOG1255|consen 93 ETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHAL 142 (329)
T ss_pred hhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=203.01 Aligned_cols=116 Identities=61% Similarity=0.899 Sum_probs=112.2
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
|++++++++||+|+|+||++|++|.+.+++||+++|++|+|+++|+++.|+|||++++|+++++++|+.++||||.+|.+
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aad 80 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAAD 80 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
++.||+++|+++|+|||||+|++|+.++++.+++..
T Consensus 81 ai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 81 AILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999997643
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=182.09 Aligned_cols=118 Identities=88% Similarity=1.254 Sum_probs=106.8
Q ss_pred CCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 48 ASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 48 ~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+.+|.+++++++||+|+|+||+.|+.+++.|++||++|||||+|++.+.++.|+|+|++++|+++..++|++|+++|++.
T Consensus 2 ~~~~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~ 81 (300)
T PLN00125 2 SPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPF 81 (300)
T ss_pred CCCceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHH
Confidence 35678999999999999999999999999999999999999999987778999999999999997445899999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH-HHHhhhh
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHDMVIN-FTRVNIL 165 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l-~~~ak~i 165 (181)
+.+++++|.++|++.++++|+||++.+++++ .+++++-
T Consensus 82 v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~ 120 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhc
Confidence 9999999999999999999999999985444 4446654
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-22 Score=171.62 Aligned_cols=115 Identities=61% Similarity=0.954 Sum_probs=106.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++++++||+|+|+||++|+.+.+.+..|||++|++|+|++.+.++.|+|+|++++|+++..+||++|+++|++.+.+++
T Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l 80 (286)
T TIGR01019 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAI 80 (286)
T ss_pred CeecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHH
Confidence 36889999999999999999999999999999999999997667899999999999999843489999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|.++|++.++++|+||++++..+|.+.|++-.+
T Consensus 81 ~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi 115 (286)
T TIGR01019 81 FEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT 115 (286)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999987543
|
ATP citrate lyases appear to form an outgroup. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-22 Score=151.49 Aligned_cols=111 Identities=25% Similarity=0.339 Sum_probs=94.0
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCC---CCeE--------EcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~---~G~e--------i~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+||+|+|++||||+.+.+.+.+ .|+++++.+++.. .|++ ..|+|++++++++.+ ++|++|||+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCChH
Confidence 4899999999999999999999 6999999988765 2332 258999999999998 499999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
.+.+++++|+++|++.|++ |||++++|+.+|+++++++||-. .||
T Consensus 79 ~~~~~~~~~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIG-TTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE--SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HhHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 9999999999999999999 99999999999999999999854 344
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=163.59 Aligned_cols=117 Identities=62% Similarity=0.966 Sum_probs=106.4
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
|++++++++||+|+|+||++|+.+.+++.++|++.+.+|||+..+.++.|+|+|++++|+++.+++|++|+++|++.+.+
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 35789999999999999999999999999999988889999953357999999999999998323999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++|.++|+|.++++|+||+.+|..+|.++|++-.+
T Consensus 81 ~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi 117 (291)
T PRK05678 81 AILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT 117 (291)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999988999999987543
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=137.52 Aligned_cols=93 Identities=31% Similarity=0.363 Sum_probs=79.9
Q ss_pred cCCceEEEEccCCCCcchh-hHHHHHhCCeE--eeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFH-TEQAIEYGTKM--VGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~-~k~~~~~g~~I--VagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
|+++||+|+|+ |++|+.. +..+.++|+++ ++++||++.|+++.|+|||++++++.+.+++|++|+++|++.|++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 9999944 44555567664 44799999999999999999999998866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030220 133 MEAMEAELDLVVCITEG 149 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG 149 (181)
++++++|||.||+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-19 Score=153.16 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=98.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC-----------CeEEcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~-----------G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
++||+|+|++||||+.+++.+.+. ++++++.++.... |....|+||++++..... ++||+|||+.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence 578999999999999999999985 8999999885532 112468999999766655 89999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
+.+.+++++|+++|+++||+ ||||+++|.++|+++++++||=+ .||
T Consensus 80 ~~~~~~l~~~~~~~~~lVIG-TTGf~~e~~~~l~~~a~~v~vv~a~Nf 126 (266)
T COG0289 80 EATLENLEFALEHGKPLVIG-TTGFTEEQLEKLREAAEKVPVVIAPNF 126 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEE-CCCCCHHHHHHHHHHHhhCCEEEeccc
Confidence 99999999999999999999 99999999999999999998754 344
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-19 Score=145.39 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=96.9
Q ss_pred eeeccCCceEEEEccCCCCcc--hhhHHHHHhCCeEeee--cCCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeCh
Q 030220 52 AVFVDKNTRVICQGITGKNGT--FHTEQAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~--~~~k~~~~~g~~IVag--VdP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
.+..+++++|+++|+ |++|+ .+|+.+.++|++|++. +||.+.|+++.++|||+ ++++.++++++|++|++||+
T Consensus 78 ~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 78 LLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred HhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 468899999999999 99999 6667788899999985 77999999999999999 69999998899999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCIT-------EGIPQHDMVINFTR 161 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iT-------tG~~~ed~~~l~~~ 161 (181)
+.||++++.++++||++||+|| +|+.+|++..-.++
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eL 199 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAEL 199 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEecCCCCcEEEEeehHHHH
Confidence 9999999999999999999999 77777776544443
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=145.95 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=98.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE----Ec--Ccccc--ccHHHHhhcc---CCc-EEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----HL--GLPVF--NSVAEAKAET---KAN-ASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e----i~--GvPVy--~sl~e~~~~~---~~D-VaIdfVPp 125 (181)
.+||+|.|++||||+++++.+.+.|+++|+.+|++..|++ +. ++|+| +++++++.+. .+| |+|||+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 3589999999999999999988899999999998776643 32 78999 8999998655 799 99999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
+.+.++++.|+++|++.|++ |||++++|+.++.+ ++.+|+-. .||
T Consensus 91 ~a~~~~~~~~~~~g~~~VvG-TTG~~~e~l~~~~~-~~~i~vv~apNf 136 (286)
T PLN02775 91 DAVNDNAELYCKNGLPFVMG-TTGGDRDRLLKDVE-ESGVYAVIAPQM 136 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHh-cCCccEEEECcc
Confidence 99999999999999999999 99999999988877 56777654 344
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-17 Score=138.87 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=95.8
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCC-C--CCCeE---E-----cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTP-K--KGGTE---H-----LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP-~--~~G~e---i-----~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+||+|+|++|+||+.+++.+.+ .++++++.+|+ . ..+++ + .|+++|++++++. .++|++|||+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~--~~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE--TDPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc--CCCCEEEECCChH
Confidence 6899999889999999999887 59999999983 2 11211 1 3689999999983 3799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh--hchhc-hhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI--LLVAF-LNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~--ipv~~-~~~ 172 (181)
.+.+.++.|+++|++.|++ |+|++++|..+|.++|++ +|+-. .||
T Consensus 80 ~~~~~~~~al~~g~~vVig-ttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVG-TTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 9999999999999999999 889999999999999999 88876 555
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-17 Score=139.68 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=95.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeE---Ec--Cccc------cccHHHHhhccCCc-EEEEeeChH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNSVAEAKAETKAN-ASVIYVPPP 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~e---i~--GvPV------y~sl~e~~~~~~~D-VaIdfVPp~ 126 (181)
||+|.|++||||+++++.+.+.|+++|+. +++...+++ +. ++|| |.+++++.+ ..+| |+|||+.|+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~-~~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFA-KYPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHh-hcCCEEEEECCChH
Confidence 79999999999999999988899999997 887654422 22 7899 889999885 3499 999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh-chhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA-FLNF 172 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~-~~~~ 172 (181)
.+.++++.|+++|++.|++ |||++++|+.+|.+.++ +|+- +.||
T Consensus 81 ~~~~n~~~~~~~gv~~ViG-TTG~~~~~~~~l~~~~~-i~~l~apNf 125 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPFVMG-TTGGDREALAKLVADAK-HPAVIAPNM 125 (275)
T ss_pred HHHHHHHHHHHCCCCEEEc-CCCCCHHHHHHHHHhcC-CCEEEECcc
Confidence 9999999999999999999 99999999999998876 6653 4555
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=133.12 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=95.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||+|+|++|+||+.+++.+.+ .++++++.+|+..... +..|+++|++++++++ ++|++|||+||+...++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence 6899999999999999998887 4899999888654221 1246889999999886 79999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 135 AMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
|+++|++.|++ |||++++|..+|.++++++||-.
T Consensus 80 al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 80 ALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred HHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEE
Confidence 99999999999 99999999999999989998764
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=136.94 Aligned_cols=109 Identities=26% Similarity=0.268 Sum_probs=95.5
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
.+|+| .+|+|+|++ |++|..+.++++++||+ -|.+|||+. .++.|+|+|++++|+++ .+|++++++|++.+
T Consensus 3 ~l~~p-~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 3 HLFNP-KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPAKYV 77 (447)
T ss_pred cccCC-CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCHHHH
Confidence 46777 459999999 77888999999998885 556999997 46999999999999977 89999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhhhhc
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNILL 166 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed------~~~l~~~ak~ip 166 (181)
.+++++|.+.|++.+|++|+||++.+ ..+|.+++++-.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~g 121 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYG 121 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999853 478888887643
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=111.13 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=95.8
Q ss_pred eccCCceEEEEccCCCCcc---hhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 54 FVDKNTRVICQGITGKNGT---FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~---~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.++..++|+|+|+|.+-.+ .+.+.+.+.|++|+ +|||+..|++++|.++|+|++|+++ ++|++.+|.+++++.+
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e~~~~ 88 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSEAAPE 88 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChhhhHH
Confidence 4556678999999966555 78888999999999 9999988889999999999999987 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+++++++.|++.+|. =.|+.-++..+..+.+..
T Consensus 89 i~~eal~~~~kv~W~-QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 89 VAREALEKGAKVVWL-QLGIRNEEAAEKARDAGL 121 (140)
T ss_pred HHHHHHhhCCCeEEE-ecCcCCHHHHHHHHHhCc
Confidence 999999999999998 899988888887777655
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-14 Score=107.33 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
.+|+|+|++ +++|..+++.+.+.|++++ +|||+. +++.|+++|++++|.+. ++|++++++|++.+.+.+++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHH
Confidence 369999999 7778899999999999877 899998 57999999999999544 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 136 MEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+.|++.+|.++. ++..++.+++++-.
T Consensus 76 ~~~g~~~v~~~~g----~~~~~~~~~a~~~g 102 (116)
T PF13380_consen 76 AALGVKAVWLQPG----AESEELIEAAREAG 102 (116)
T ss_dssp HHHT-SEEEE-TT----S--HHHHHHHHHTT
T ss_pred HHcCCCEEEEEcc----hHHHHHHHHHHHcC
Confidence 9999999999444 44455555555533
|
|
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=130.06 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=93.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCe-------EeeecCCCCC-------CeEEcCccccccHHHHhhcc-CCc
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTK-------MVGGVTPKKG-------GTEHLGLPVFNSVAEAKAET-KAN 117 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~-------IVagVdP~~~-------G~ei~GvPVy~sl~e~~~~~-~~D 117 (181)
.+|+++++.++.| |....++.|+++||- +.+.|.|..+ |+++.|+|||++++|+.+++ ++|
T Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 5 QLFSRTTQALFYN----YKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred eeecCCceeEEEc----CcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 5789999999999 577888888887642 4555788652 34567999999999999887 899
Q ss_pred EEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 118 ASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.|+|+||..|.+.+.|+++ +||+.+|++|+||++.|+.+|.+.|++-.
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g 130 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANN 130 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcC
Confidence 99999999999998888887 59999999999999999999999998743
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-11 Score=89.71 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=89.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe----EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
.||.|+|+ |.+|+.+.+.+.+. ++++++.+|+..... +-.|+|+|++++++++..++|++++++|+..-.+.+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 37999999 99999999877774 788999888875321 236899999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+|+++|++.++==--..+.+|..+|.+++++--
T Consensus 80 ~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9999999944443224679999999999997654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-10 Score=95.03 Aligned_cols=94 Identities=23% Similarity=0.322 Sum_probs=78.4
Q ss_pred eeccCCceEEEEccCCCCcchhhHHH--HHhCCeEeeecC--CCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVT--PKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~--~~~g~~IVagVd--P~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..+..++|+|+|+ |++|+.+++.. .+.|++++|.+| |.+.+..+.|+||+. +++++++++++|++++++|..
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 44556789999999 99999888753 235999998766 555565677888875 688888777899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iT 147 (181)
..+++++.+.++|++.|++|+
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~ 178 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFA 178 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecC
Confidence 999999999999999999985
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-10 Score=96.03 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=84.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC----eEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----TEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G----~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++||.|+|+ |+||+.+++.+.+. ++++++.+++.... +.+ .++++|++++++ + .++|++++++|+..+.+.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEH 77 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHH
Confidence 368999999 99999999988885 88888876543221 111 268999999998 3 479999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCC-CCHHH-HHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEG-IPQHD-MVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG-~~~ed-~~~l~~~ak~ipv 167 (181)
+.+++++|++.++. +.| +..++ ..+|.++|++-.+
T Consensus 78 ~~~aL~aGk~Vvi~-s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 78 VVPILKAGIDCAVI-SVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHcCCCEEEe-ChHHhcCHHHHHHHHHHHHHCCC
Confidence 99999999999887 666 66444 5788888877544
|
|
| >COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=102.45 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=84.2
Q ss_pred eeccCCceEEEEccCCC---CcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 53 VFVDKNTRVICQGITGK---NGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 53 ~~~~~~~rViVvGatGk---mG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
.++.|+. |+|+|++++ .|+.+.++++++| + -+.+|||... ++.|+++|+++.+++. .+|++++.||+..+
T Consensus 6 ~~~~p~s-vavigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~~--~v~G~~ay~s~~~lp~--~~dlav~~v~~~~~ 79 (598)
T COG1042 6 RLFAPKS-IAVIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKYD--EVLGVKAYTSVADLPD--APDLAVIVVPAKVV 79 (598)
T ss_pred hhhCCce-EEEeeccCCcchhHHHHHHHHHhcC-CCceEecCcccc--ccccccccchHhhCCC--CCCeeEEEechhhh
Confidence 4677755 999999965 5557888888887 4 4559999984 6999999999999988 89999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
.+++++|.+.|++.+|+++.||.+--.
T Consensus 80 ~~i~~~~~~kGv~~~i~is~gf~e~~~ 106 (598)
T COG1042 80 PEIVHELGEKGVKGAIVISAGFREAGE 106 (598)
T ss_pred HHHHHHhhccCCceEEEechhhhHHhh
Confidence 999999999999999999999998654
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=90.90 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=85.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+||.|+|+ |+||+.+.+.+.+. ++++++.+|+.... + +..|.++|.++++++. ++|++++++|++...+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 68999999 99999999988874 68888888876421 1 1246789999999885 899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCC--CHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGI--PQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~--~~ed~~~l~~~ak~ip 166 (181)
.+++++|...++. +.|- ..+...+|.++|++-.
T Consensus 79 ~~al~~Gk~Vvv~-s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 79 PKSLENGKDVIIM-SVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHcCCCEEEE-chHHhcCHHHHHHHHHHHHHcC
Confidence 9999999887765 6653 6777889999997744
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.4e-09 Score=90.92 Aligned_cols=109 Identities=15% Similarity=0.046 Sum_probs=87.8
Q ss_pred CCceEEEEccCCCCcc-hhhHHHHH-hCCeEeeecCCCCC--CeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGT-FHTEQAIE-YGTKMVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~-~~~k~~~~-~g~~IVagVdP~~~--G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+..||.|+|+ |.+|+ .+.+.+.. .++++++..|+... .....+.++|.+++|+++..++|++++++|+....+.+
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3479999999 99998 57777766 48999988776532 11234678999999999866899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+|+++|++.++==-=..+.+|..+|.++|++-.
T Consensus 82 ~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g 115 (346)
T PRK11579 82 KAALEAGKHVVVDKPFTVTLSQARELDALAKSAG 115 (346)
T ss_pred HHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999876654334578999999999997643
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=85.29 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=86.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-C-CeEeeecCCCCCC-e---EEcCcc-ccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-G-TKMVGGVTPKKGG-T---EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g-~~IVagVdP~~~G-~---ei~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
++.||.|+|+.|-+++.+...+.+. + +++++.+|++... + +-.|++ +|.+++++++..++|++++.+|+..-.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 4689999999445556788888885 4 6999987766532 1 225775 999999999877799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.+..|+++|++.++==-=..+.+|.++|.++|++-
T Consensus 82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 82 ELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 999999999997663111237899999999999775
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-08 Score=83.87 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCC-eE---EcC-ccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-TE---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G-~e---i~G-vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..||.|+|+ |++|+.+++.+.+ .++++++..|+.... ++ ..| .++|.+++++.+ ++|++++++|.+...+
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLRA 82 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHHH
Confidence 378999999 9999999998886 388888777765321 11 124 468899999986 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+..++++|.+.++. +.| ...+..+|.+++++-
T Consensus 83 ~~~~aL~aGk~Vi~~-s~g-al~~~~~L~~~A~~~ 115 (271)
T PRK13302 83 IVEPVLAAGKKAIVL-SVG-ALLRNEDLIDLARQN 115 (271)
T ss_pred HHHHHHHcCCcEEEe-cch-hHHhHHHHHHHHHHc
Confidence 999999999877664 544 234677888888663
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=84.36 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=83.6
Q ss_pred ceEEEEccCCCCcc-hhhHHHHH--hCCeEeeecCCCCCC----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGT-FHTEQAIE--YGTKMVGGVTPKKGG----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~-~~~k~~~~--~g~~IVagVdP~~~G----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||.|+|+ |.+++ .+.+.+.. .++++++..|+...- .+..++++|++++|+++..++|++++++|+..-.+.
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 58999999 98764 67776644 379999877764311 123458899999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.+|+++|++.++==-=..+.+|..+|.++|++-.
T Consensus 81 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 115 (344)
T PRK10206 81 AKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKG 115 (344)
T ss_pred HHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 99999999765542223578999999999997644
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.6e-08 Score=85.54 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=82.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..||+|+|+ |++|+.+.+.+.+. ++++|+.+++...+.--.++++|. +.++... ++|++++++|...-.+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 479999999 99999999988874 999999878663111012355555 5555544 79999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCC-HHHHHHHHHHhhh
Q 030220 135 AMEAELDLVVCITEGIP-QHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~-~ed~~~l~~~ak~ 164 (181)
++++|+..|..+-.+.. .+..++|.++|++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~ 110 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAAKA 110 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHHHH
Confidence 99999999988766664 4778899999986
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=83.75 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=69.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCC---------CeE-----------E--cCccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG---------GTE-----------H--LGLPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~---------G~e-----------i--~GvPVy~sl~e~~~~~ 114 (181)
+.||+|.|+ |+||+.+++.+.+ .++++++..|+... |-. . .+++++.+++++.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~-- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE-- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence 368999999 9999999998887 49999998774321 100 1 26888888888876
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++|++++|+|+....+.++.++++|++.|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEc
Confidence 7999999999999999999999999666655
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=80.16 Aligned_cols=109 Identities=18% Similarity=0.064 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCC-----CCeE----------EcCcccc------cc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE----------HLGLPVF------NS 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~-----~G~e----------i~GvPVy------~s 106 (181)
..||+|+|+ |++|+.+++.+.+. ++++++..|+.. .|.. ...+..| .+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 368999999 99999999887653 688998877431 1100 0113334 37
Q ss_pred HHHHhhccCCcEEEEeeChH-----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 107 VAEAKAETKANASVIYVPPP-----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 107 l~e~~~~~~~DVaIdfVPp~-----~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+++++++.++|++|+++|+. .+.+.+..|+++|++.|.. +++.-..+..+|.++|++-.+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta-NK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS-NKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC-CcHHHHhhHHHHHHHHHHcCCE
Confidence 88888766899999999963 4689999999999987776 6666666778899999875543
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-07 Score=80.00 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=80.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-h-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEee----ChH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-Y-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYV----PPP 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfV----Pp~ 126 (181)
+..||+|+|+ | ||+.+.+.+.+ . +++++|.+|++... + +-.|+|.|.+++|+++ ++|+.++++ |+.
T Consensus 2 ~~~rVgViG~-~-~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT-R-FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH-H-HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence 3578999999 4 89999998887 4 79999988876432 1 1258999999999997 677777776 457
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.-.+.+.+|+++|++.+ | =-=+..+|.++|.++|++-.
T Consensus 78 ~H~e~a~~aL~aGkHVL-~-EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 78 QGSALARALLARGIHVL-Q-EHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred cHHHHHHHHHhCCCeEE-E-cCCCCHHHHHHHHHHHHHcC
Confidence 88999999999997654 3 23344799999999997743
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=77.29 Aligned_cols=105 Identities=21% Similarity=0.143 Sum_probs=73.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCC-----CCeE-------------EcCcc----ccc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTE-------------HLGLP----VFN 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~-----~G~e-------------i~GvP----Vy~ 105 (181)
..+|+|+|+ |+.|+..++.+.+ +| ++|++..|... .|-. +..++ .++
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 368999999 9999988887655 45 66887655321 1100 01111 112
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.+|+++..++|++|++++++.+.+....++++|++.|.+ +.|.-.+...+|.++|++
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVta-nK~~la~~~~el~~la~~ 139 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTS-NKPPIAFHYDELLDLANE 139 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEEC-CHHHHHhCHHHHHHHHHH
Confidence 6778776568999999999999999999999999999988 777333444455555544
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.1e-07 Score=72.37 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
++++|+|+|+ |++|+.+..++++.|.+++-+..++.... +-.|+.|+ +++|+.+ +.|++++.+|.+.-.++-+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHHHHH
Confidence 3578999999 99999999999999999887776654111 23689888 7788888 7999999999999999987
Q ss_pred HHHHcCCC--EEEEeCCCCCHH
Q 030220 134 EAMEAELD--LVVCITEGIPQH 153 (181)
Q Consensus 134 eaie~GIk--~IV~iTtG~~~e 153 (181)
+-++-..+ .+++|+-||+.+
T Consensus 79 ~~I~p~l~~G~~L~fahGfni~ 100 (165)
T PF07991_consen 79 EEIAPNLKPGATLVFAHGFNIH 100 (165)
T ss_dssp HHHHHHS-TT-EEEESSSHHHH
T ss_pred HHHHhhCCCCCEEEeCCcchhh
Confidence 77776544 488999999876
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-06 Score=83.42 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=83.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCe------------EeeecCCCCCC-eE----EcC---ccc-cccHHHHhhc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNSVAEAKAE 113 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~------------IVagVdP~~~G-~e----i~G---vPV-y~sl~e~~~~ 113 (181)
.++.||+|+|+ |++|+.+++.+.+. +.+ +|+..|+.... ++ ..+ +++ +.+.+++.+.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 44679999999 99999999988774 544 34444443211 11 113 455 6676666542
Q ss_pred -cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchh
Q 030220 114 -TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLN 171 (181)
Q Consensus 114 -~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~ 171 (181)
.++|++|..+|+....++++.|+++|++.+. +....+++.+|.++|++-.|.+.|
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~---eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVT---ASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEE---CcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2699999999999999999999999997743 348999999999999988777655
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-06 Score=64.58 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=66.8
Q ss_pred eEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC-CCeEEc----------Cccccc-cHHHHhhccCCcEEEEeeChH
Q 030220 60 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL----------GLPVFN-SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~-~G~ei~----------GvPVy~-sl~e~~~~~~~DVaIdfVPp~ 126 (181)
||.|+|+||..|+...+.+.+. .++++..+.... .|+.+. .+.+-+ +.+++ + ++|+++.++|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence 7999999999999999999885 889888766555 453331 122222 23333 4 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
.+.+.+..+++.|+ .||-.+.-|..++
T Consensus 78 ~~~~~~~~~~~~g~-~ViD~s~~~R~~~ 104 (121)
T PF01118_consen 78 ASKELAPKLLKAGI-KVIDLSGDFRLDD 104 (121)
T ss_dssp HHHHHHHHHHHTTS-EEEESSSTTTTST
T ss_pred HHHHHHHHHhhCCc-EEEeCCHHHhCCC
Confidence 99999999999999 5555576665544
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-06 Score=76.40 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=81.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCCCC---eEEcCccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~~G---~ei~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
..||.|+|+ |.+|+.+++.+.+. ++++++..++.... -...+..+|++.+++++..++|+++++++
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 478999999 99999887765441 56788876644311 11235678889999987668999999986
Q ss_pred h-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 125 P-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+ +.+.+.+.+|+++|++.|.. --....++..+|.++|++-.+
T Consensus 82 ~~~~~~~~~~~aL~~GkhVVta-NK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 82 GIEPARELILKALEAGKHVVTA-NKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CchHHHHHHHHHHHCCCeEEEc-CHHHHHHHHHHHHHHHHHcCC
Confidence 5 67899999999999887653 235566788999999977555
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.7e-06 Score=69.79 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+++|.|+|+ |+||+.+.+.+.+.|. ..|..++++... + +..|+.+.++.+++.+ ++|++++++|+....++
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence 467999999 9999999999888762 233356654311 1 1136777888888776 79999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++++....=+.|+.++.|++.+++.++.
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHHHHHhc
Confidence 9987664225788889999988877664
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=67.06 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC---Ce-EeeecCC-CCC-CeE---EcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG---TK-MVGGVTP-KKG-GTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g---~~-IVagVdP-~~~-G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+.+||.|+|+ |+||+.+.+.+.+.+ .+ ++ ..++ +.. .+. -.|+.++.+.+++++ ++|++++.+|+..
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~ 78 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSA 78 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEE-EECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHH
Confidence 3578999998 999999999887754 33 43 3333 211 111 136778888888887 7999999999999
Q ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030220 128 AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 128 a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~ 159 (181)
..++++++... .=+.||.++.|++.+++.+..
T Consensus 79 ~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 79 HEELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 99999886532 225788889999999877764
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.2e-07 Score=67.25 Aligned_cols=100 Identities=16% Similarity=0.038 Sum_probs=74.6
Q ss_pred ccCCCCcchhhHHHHHh----CCeEeeecCCCCCC------eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 65 GITGKNGTFHTEQAIEY----GTKMVGGVTPKKGG------TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 65 GatGkmG~~~~k~~~~~----g~~IVagVdP~~~G------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
|+ |++|+.+++.+.+. ++++++..+.. .. ....+..++.+++++++..++|++|++++++.+.+.+..
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~ 78 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEK 78 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHH
Confidence 56 99999999988873 78899887776 11 012356788899999886689999999999999999999
Q ss_pred HHHcCCCEEEEeCCCC--CHHHHHHHHHHhhhhch
Q 030220 135 AMEAELDLVVCITEGI--PQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 aie~GIk~IV~iTtG~--~~ed~~~l~~~ak~ipv 167 (181)
++++|++.|.. .-|- +.....+|.++|++-.+
T Consensus 79 ~L~~G~~VVt~-nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 79 ALERGKHVVTA-NKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHTTCEEEES--HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHCCCeEEEE-CHHHhhhHHHHHHHHHHHHHcCC
Confidence 99999999886 4333 33677888888876543
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.3e-06 Score=73.47 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=69.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
.++|.|+|+ |+||+.+.+.+.+.|++++.+.++.... .. -.|+.+. +.+++.+ ++|++++.+||+ ......+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ 78 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEA 78 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHH
Confidence 467999999 9999999999999999877666654211 11 1367665 4777776 799999999999 5444444
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHHHH
Q 030220 134 EAMEA-ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 134 eaie~-GIk~IV~iTtG~~~ed~~~l 158 (181)
+.... .-..+|.|..||+.+++...
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~~~~ 104 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFVQIV 104 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhcccc
Confidence 44432 11248888999999987653
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.3e-06 Score=71.66 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||.++|+ |+||..+.+.+.+.|+ .-+...|+.... +. -.|+.++++.+|+.+ ++|++++++||..+.++
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHHH
Confidence 47999999 9999999999988764 123456654422 11 136777778888877 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.... +=+.|+-+..|++.+++.++..
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 9886543 2357888899999999998763
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-06 Score=61.00 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCC-e---EEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G-~---ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
||.++|+ |+||+.+.+.+.+.| .++....+++... . +..++.++. +..|+.+ +.|++++++||....++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence 6899999 999999999999988 6766333433311 1 123566677 7888888 79999999999999999
Q ss_pred HHHHH-HcCCCEEEEeCC
Q 030220 132 IMEAM-EAELDLVVCITE 148 (181)
Q Consensus 132 ~~eai-e~GIk~IV~iTt 148 (181)
+++.- ...=+.+|-++.
T Consensus 78 ~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 78 LSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHTTSEEEEEST
T ss_pred HHHHhhccCCCEEEEeCC
Confidence 99982 223344444343
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-06 Score=74.09 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=70.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc----Ccc-----ccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL----GLP-----VFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~----GvP-----Vy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++||+|+|+||.+|+.+.+.+.+. ++++++..++...++.+. .++ .|.++++. ...++|++++++|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcHH
Confidence 478999999999999999988885 899988777544342221 122 35455443 2237999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
..+.+.++.++|++.|=. +..|.-++
T Consensus 81 ~~~~v~~a~~aG~~VID~-S~~fR~~~ 106 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDL-SADFRLKD 106 (343)
T ss_pred HHHHHHHHHhCCCEEEEC-CcccCCCC
Confidence 999999999999765544 77776654
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.9e-06 Score=72.51 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=71.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~ 133 (181)
.++|.|+|+ |+||+.+.+.+.+.|++++.+..+..... +-.|+.+. +++++.+ ++|++++.+|+....+++ +
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHHH
Confidence 367999999 99999999999999999876544422111 12467666 7888888 799999999999988887 4
Q ss_pred HHHHc-CCCEEEEeCCCCCHHHHH
Q 030220 134 EAMEA-ELDLVVCITEGIPQHDMV 156 (181)
Q Consensus 134 eaie~-GIk~IV~iTtG~~~ed~~ 156 (181)
+...+ .-..++.|+.||+.+...
T Consensus 93 ~I~~~Lk~g~iL~~a~G~~i~~~~ 116 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGFNIHFGQ 116 (330)
T ss_pred HHHhcCCCCCEEEECCCCChhhce
Confidence 44433 122466889999999865
|
|
| >PRK06091 membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.6e-06 Score=76.99 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=58.4
Q ss_pred CccccccHHHHhhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 100 GLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 100 GvPVy~sl~e~~~~~-~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|.|++++++.++. ++|+++++||+..+.+.+++|+++| +.+++||.||+.++..+|.++|++-.+
T Consensus 101 ~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~Ar~~Gl 168 (555)
T PRK06091 101 SLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRAREKGL 168 (555)
T ss_pred CCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 578888888877644 5799999999999999999999999 567788999999999999999977543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-06 Score=67.58 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeCh-HHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~ 133 (181)
+++|.++|. |+||+.+.+.+.+.|+++.. ..+|.+.. +. .|..+.++++|+.+ ++|+++.++|. +.+.++++
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~-~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~ 76 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAE-ALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLF 76 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHH-HHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhh-hhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhh
Confidence 578999999 99999999999999999753 33333321 11 47889999999998 78999999998 45566666
Q ss_pred H--HHHcC-CCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 E--AMEAE-LDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 e--aie~G-Ik~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
. .+..- -..+++-++-.+.++..++.+......
T Consensus 77 ~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 77 GENILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp CTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred hhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 5 55542 344555577888888888888876543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=67.95 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=74.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC----eEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~----~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||.++|+ |+||+.+.+.+.+.|+ +|+.-.|+.....+ -.|+.+.++..++.+ ++|++|+++||+.+.++
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV 77 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence 46999998 9999999999998876 65533255432111 147888888888877 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++.+... .=+.||.++.|++.+++.++..
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~ 108 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQEWAG 108 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHHHHcC
Confidence 9876543 1245677789999998886653
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=68.58 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCCC--e----EEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--T----EHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~G--~----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
++|.|+|+ |+||+.+.+.+.+.| .+++ .+++.... . +..++.+..+..++.+ ++|++|+++||..+
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~ 77 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAV 77 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHH
Confidence 57999998 999999999988876 4555 34432211 0 1223455677788776 79999999999999
Q ss_pred HHHHHHHHH---cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 129 AAAIMEAME---AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 129 ~~~~~eaie---~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
.++++++.. .+ +.||.++.|++.+++.++..
T Consensus 78 ~~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~~~~ 111 (277)
T PRK06928 78 LPLLKDCAPVLTPD-RHVVSIAAGVSLDDLLEITP 111 (277)
T ss_pred HHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHHcC
Confidence 999998854 34 35777799999999988753
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.2e-06 Score=73.65 Aligned_cols=94 Identities=24% Similarity=0.314 Sum_probs=71.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
..+|.|+|. |+||+.+++++...|+++++..++..... +..|+.++ +++|+.+ ++|++++.+|.+...++..+-
T Consensus 16 gKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 16 GKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHHHH
Confidence 356999999 99999999999999999987666543211 12477665 8999988 899999999987766666543
Q ss_pred HHcCC--CEEEEeCCCCCHHHH
Q 030220 136 MEAEL--DLVVCITEGIPQHDM 155 (181)
Q Consensus 136 ie~GI--k~IV~iTtG~~~ed~ 155 (181)
+-... ..+++|+-||+.|.-
T Consensus 92 il~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 92 VEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHhcCCCCCEEEECCCcceecC
Confidence 44433 358999999998753
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=66.27 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=73.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-C--eEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~--~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
++||.++|+ |+||..+.+.+.+.+ . +-+...+++... .++....+..++.+ ++|++++++||....+++.+
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN---TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc---CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHH
Confidence 368999999 999999999988865 2 113356665421 23444556677766 78999999999999999998
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+... +-+.||.+..|++.+++.++..
T Consensus 77 i~~~l~~~~iIS~~aGi~~~~l~~~~~ 103 (260)
T PTZ00431 77 IKPYLGSKLLISICGGLNLKTLEEMVG 103 (260)
T ss_pred HHhhccCCEEEEEeCCccHHHHHHHcC
Confidence 7653 2357888899999998888754
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-06 Score=72.94 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=70.1
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeec--CCCCCCe---EEcCccc-cccHHHHhhc---cCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGV--TPKKGGT---EHLGLPV-FNSVAEAKAE---TKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagV--dP~~~G~---ei~GvPV-y~sl~e~~~~---~~~DVaIdfVPp~~ 127 (181)
..||.|+|. |++|+.+...+.+ .++++++.+ ||+..+. +-.|+|. |++++++++. .++|++++.+|+..
T Consensus 4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 478999995 9999987777766 488988765 4543331 1258998 5789999875 57999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030220 128 AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~ 145 (181)
..+.+..+.++|+..|..
T Consensus 83 H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 83 HVRHAAKLREAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHHcCCeEEEC
Confidence 999999999999988766
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=67.36 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=72.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+|.|+|+ |+||+.+.+.+.+.|. .-|...|++... ++..|+.+..+..++.+ ++|++++++||....++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence 6999998 9999999999888773 233455654311 01236778888888776 79999999999999999
Q ss_pred HHHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.... .=+.|+.++.|++.+++.++..
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~L~~~~~ 109 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQLETLVP 109 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 9886543 1246788899999887776643
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=69.17 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=80.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCC-eEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G-~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..||.|+|| |.+|+.+++.+.+. ++++++..++.... +.. ...+++.++++++. .++|++|-+-+++++.+.+
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLA-WRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhh-cCCCEEEECCCHHHHHHHH
Confidence 468999999 99999999987762 47888765544211 111 24889999999853 2799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHH-HHHHHHHhhh
Q 030220 133 MEAMEAELDLVVCITEGIPQHD-MVINFTRVNI 164 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed-~~~l~~~ak~ 164 (181)
+..+++|+..++.-..-|.+++ .++|.++|++
T Consensus 80 ~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 80 EGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 9999999999998445566544 5677777754
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=70.59 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=68.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecC--CCCCC---eEEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT--PKKGG---TEHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVd--P~~~G---~ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||+|+|+ |++|+.+...+.+ .++++++.+| |...+ .+-.|+|.+. +.+++++..++|++++++|+....+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 58999998 9999988766665 5889887655 54323 1225888654 78998876679999999999999999
Q ss_pred HHHHHHcCCCEEEE
Q 030220 132 IMEAMEAELDLVVC 145 (181)
Q Consensus 132 ~~eaie~GIk~IV~ 145 (181)
+..++++|++.+..
T Consensus 81 a~~al~aGk~VIde 94 (285)
T TIGR03215 81 ARLLAELGKIVIDL 94 (285)
T ss_pred HHHHHHcCCEEEEC
Confidence 99999999887644
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=71.80 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=75.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC---eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G---~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..+|+|+|+ |.+|+++..++.+.|.+|+-|+-++..- -+-.|+.|| +++|+.+ ..|++++.+|.+.-.++-++
T Consensus 18 gK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k--~ADvim~L~PDe~q~~vy~~ 93 (338)
T COG0059 18 GKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAK--RADVVMILLPDEQQKEVYEK 93 (338)
T ss_pred CCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhh--cCCEEEEeCchhhHHHHHHH
Confidence 457999999 9999999999999999988787766531 023699999 7788888 79999999999988888886
Q ss_pred HHHcCCCE--EEEeCCCCCHHH
Q 030220 135 AMEAELDL--VVCITEGIPQHD 154 (181)
Q Consensus 135 aie~GIk~--IV~iTtG~~~ed 154 (181)
-++-..+. ++.|+-||+.|.
T Consensus 94 ~I~p~Lk~G~aL~FaHGfNihf 115 (338)
T COG0059 94 EIAPNLKEGAALGFAHGFNIHF 115 (338)
T ss_pred HhhhhhcCCceEEeccccceec
Confidence 66554332 888999999875
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=4e-05 Score=65.69 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=72.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCCC--eE---EcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~G--~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||.++|+ |+||+.+.+.+.+.| .+++ ..|+.... .. -.|+.+.++..++.+ ++|++|+.+||....
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHHH
Confidence 57999998 999999999998876 4444 45543211 11 136777788888776 789999999999999
Q ss_pred HHHHHHHHc--CCCEEEEeCCCCCHHHHHHHH
Q 030220 130 AAIMEAMEA--ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 130 ~~~~eaie~--GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++++..... .=+.||-+..|++.+++.++.
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 999877643 124566667999999888865
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=66.63 Aligned_cols=99 Identities=6% Similarity=0.011 Sum_probs=72.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeE--eeecCCCCCC-eE----EcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKM--VGGVTPKKGG-TE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~I--VagVdP~~~G-~e----i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
||.++|+ |+||+.+.+.+.+.|.++ +...|+.... ++ ..|+.++++.+++.+ ++|++++.+||+...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 6999998 999999999988866542 3334443211 11 225778888888877 789999999999999988
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+++--..=+.||.+..|++.+++.++...
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHHHhCC
Confidence 76521122467777899999999988754
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.2e-05 Score=66.17 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-C--eEeeecCCCCCCeE----EcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGTE----HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~--~IVagVdP~~~G~e----i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+++|.++|+ |+||+.+...+.+.| . +.|...||...-.. -.|+.+.++..++.+ +.|++++.|.|....+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~ 77 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEE 77 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHH
Confidence 367999999 999999999999977 1 23435666543221 135556667777777 7999999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 131 AIMEAME-AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 131 ~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++..+-. ..=+.||-+..|++.++++.+..
T Consensus 78 vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 78 VLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 9999874 34456888899999999998875
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.9e-05 Score=64.69 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=79.8
Q ss_pred eEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+|.++|| |..|+.+++.+.+. ++++++.-|..... .+ -.+-+.-.+++|.++ ++|++|=+-.++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence 6899999 99999999988874 68888776644321 11 123334478999986 8999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHH-HHHHHHHhhhh
Q 030220 134 EAMEAELDLVVCITEGIPQHD-MVINFTRVNIL 165 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed-~~~l~~~ak~i 165 (181)
.++++|+..+|.-+.-|.+++ .+++.+++|..
T Consensus 79 ~~L~~g~d~iV~SVGALad~~l~erl~~lak~~ 111 (255)
T COG1712 79 KILKAGIDVIVMSVGALADEGLRERLRELAKCG 111 (255)
T ss_pred HHHhcCCCEEEEechhccChHHHHHHHHHHhcC
Confidence 999999999998555577666 45566777653
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=57.95 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=61.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCeEEcCccccccHHHHhhc-cCCcEEEEee-ChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGTEHLGLPVFNSVAEAKAE-TKANASVIYV-PPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~ei~GvPVy~sl~e~~~~-~~~DVaIdfV-Pp~~a~~~~~ea 135 (181)
+++|+|+ |.+|+.+++.+.+.|+++++-+|. .+.+..+.|+|++...+++.+. .+.+..++.+ ++..-++..+.+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 4899999 999999999998889999998774 4445678999999876665432 1356777777 455556666667
Q ss_pred HHcCCCEE
Q 030220 136 MEAELDLV 143 (181)
Q Consensus 136 ie~GIk~I 143 (181)
.+.+++..
T Consensus 80 ~~~g~~~~ 87 (201)
T TIGR03570 80 KAKGYRFA 87 (201)
T ss_pred HhCCCcce
Confidence 67776554
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.9e-05 Score=58.72 Aligned_cols=85 Identities=27% Similarity=0.287 Sum_probs=62.3
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecC-CCC----CCeEEcCccccc--cHHHHhhccCCcEEEEeeC-----hHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKK----GGTEHLGLPVFN--SVAEAKAETKANASVIYVP-----PPFA 128 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~----~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVP-----p~~a 128 (181)
|+|.|+||..|+.+++.+.+.|.+|.+.+- |.+ .+-++.-.-+++ ++.++++ ++|+++.+++ ...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 789999999999999999999999998654 221 111221111222 4667676 8999999998 5667
Q ss_pred HHHHHHHHHcCCCEEEEeC
Q 030220 129 AAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iT 147 (181)
..+++.+-++|++.+|.++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEE
T ss_pred ccccccccccccccceeee
Confidence 7777777888999887655
|
... |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.7e-05 Score=65.54 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIME 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~e 134 (181)
+|.++|. |+||+...+.+.+.|++|+ ..|+.... ++ -.|..++++++++.++. ++|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 6999999 9999999999999999876 45544211 11 14778889999987643 379999999998 77777776
Q ss_pred HHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 AMEAE-L-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 aie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
....- - +.+|. ++..+..+..++.+..++-.+
T Consensus 80 i~~~l~~g~ivid-~st~~~~~~~~~~~~~~~~g~ 113 (299)
T PRK12490 80 LYPLLSPGDIVVD-GGNSRYKDDLRRAEELAERGI 113 (299)
T ss_pred HhccCCCCCEEEE-CCCCCchhHHHHHHHHHHcCC
Confidence 55432 1 24555 656666667777666654443
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.7e-05 Score=63.86 Aligned_cols=82 Identities=9% Similarity=0.010 Sum_probs=65.7
Q ss_pred CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC-C-CHHHH
Q 030220 82 GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG-I-PQHDM 155 (181)
Q Consensus 82 g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG-~-~~ed~ 155 (181)
++++++..|+.... + +..|+++|++++|+++ .++|++++++|+....+.+..++++|++.++. +.| + ..++.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~-s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM-SVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE-CCcccCCHHHH
Confidence 46788877776422 1 1247899999999975 37999999999999999999999999988885 665 3 56889
Q ss_pred HHHHHHhhhh
Q 030220 156 VINFTRVNIL 165 (181)
Q Consensus 156 ~~l~~~ak~i 165 (181)
.+|.+++++-
T Consensus 79 ~~l~~aA~~~ 88 (229)
T TIGR03855 79 ERLREVARSS 88 (229)
T ss_pred HHHHHHHHhc
Confidence 9999998763
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.4e-05 Score=67.09 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=89.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCC-eE---EcC---ccccccHHHHhhccCCcEEEEeeChH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-TE---HLG---LPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G-~e---i~G---vPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..|+-++|+ |++++..++.+.. .+..|||..||...- ++ -++ .++|++.+|+.+..++|++.+.+|..
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 4678999999 9999988776555 389999999995421 11 133 58999999999877899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.-++++..|+++|.+..+==--..+++|.++|.|+|+.=.|
T Consensus 84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 99999999999999955433367999999999999987543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.6e-05 Score=64.39 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=73.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~ 133 (181)
+||.++|. |+||+...+.+.+.|++++ ..|+.... +. -.|..++++++|+.+.. ++|++++++|+. .+.++++
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~ 78 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID 78 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH
Confidence 37999999 9999999999999999865 34544211 11 14788888999987643 479999999987 6677776
Q ss_pred HHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 134 EAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 134 eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+...- =+.+|..+++-+ +...++.+.+++..+.
T Consensus 79 ~l~~~l~~g~ivid~st~~~-~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 79 ELAPLLSPGDIVIDGGNSYY-KDDIRRAELLAEKGIH 114 (301)
T ss_pred HHHhhCCCCCEEEeCCCCCh-hHHHHHHHHHHHcCCE
Confidence 655431 145666455554 4555666666554443
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.8e-05 Score=65.90 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=67.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-----------eEEcC------ccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----------TEHLG------LPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-----------~ei~G------vPVy~sl~e~~~~~~~DVaI 120 (181)
++||.|+|+ |.||......+.+.|.++. .+++.... ..+.| +...++++|+.+ ++|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence 468999999 9999999999998888865 34432110 00113 335567888776 799999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH--HHHHHHHh
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD--MVINFTRV 162 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed--~~~l~~~a 162 (181)
+++|+..+.++++.+ ..+. .++.+++|+..++ ...+.+..
T Consensus 80 ~~v~~~~~~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l 121 (328)
T PRK14618 80 VAVPSKALRETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVL 121 (328)
T ss_pred EECchHHHHHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHH
Confidence 999999887776543 3343 4566699987554 44444443
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.2e-05 Score=66.78 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC-CCeEE----cCcc-----ccc--cHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH----LGLP-----VFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~-~G~ei----~GvP-----Vy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
+||+|+|+||-.|+.+.+.+.+. ++++++.++... .|+.+ ..++ .+. +.+++.+ ++|++++++|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 47999999999999999999885 889886645332 33222 1111 133 3445544 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
..+.+.+..+.++|++.|=. +.-|..++.
T Consensus 79 ~~s~~~~~~~~~~G~~VIDl-S~~fR~~~~ 107 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDL-SADFRLKDP 107 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeC-ChhhhcCCh
Confidence 99999999999999655544 887776653
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.8e-05 Score=58.64 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=60.2
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.+..||.|+|+ ||.|+...+.+.+.|++|++..++.... ..+.+.++. +++|+.+ +.|+++++||.+...+
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~--~aDlv~iavpDdaI~~ 83 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAIL-DLEEILR--DADLVFIAVPDDAIAE 83 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccc-ccccccc--cCCEEEEEechHHHHH
Confidence 45688999999 9999999999999999998766655422 124455665 4677776 7999999999999999
Q ss_pred HHHHHHHcC---CCEEEEeCCCCCHHH
Q 030220 131 AIMEAMEAE---LDLVVCITEGIPQHD 154 (181)
Q Consensus 131 ~~~eaie~G---Ik~IV~iTtG~~~ed 154 (181)
+++++...| -..+|+=|.|--.-|
T Consensus 84 va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 84 VAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHhccCCCCcEEEECCCCChHH
Confidence 999998772 223555577754444
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=63.33 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.+||.|+|+ |+||+...+.+.+.|.+|. ..|+... .+++++.+ +.|++++++|.....++++.+..
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~~----------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRSG----------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCCC----------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHH
Confidence 468999999 9999999999999898876 5555431 46778777 79999999999988888877654
Q ss_pred cCC---CEEEEeCCCCCHHHHH
Q 030220 138 AEL---DLVVCITEGIPQHDMV 156 (181)
Q Consensus 138 ~GI---k~IV~iTtG~~~ed~~ 156 (181)
+.. ..|+..|.|+..+...
T Consensus 70 ~~~~~~~ivi~~s~gi~~~~~~ 91 (308)
T PRK14619 70 LNLPPETIIVTATKGLDPETTR 91 (308)
T ss_pred hcCCCCcEEEEeCCcccCCCCc
Confidence 322 3466667788766544
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00016 Score=61.94 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeChHHHHH-HH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI-- 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~-- 132 (181)
++|.|+|+ |.||+.+.+.+.+.|+++. +.|+.... +. -.|+.+.++.+|+.+ ++|++++++|.....+ ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence 47999998 9999999999998898876 45654311 11 136777788999887 7999999999665433 33
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 -~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.+... .- +.|+. ++.++.....++.+..+...
T Consensus 79 ~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~g 114 (296)
T PRK11559 79 ENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAKG 114 (296)
T ss_pred cchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHcC
Confidence 223332 11 23454 56667777777777765543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=62.57 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=68.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhc-cCCcEEEEeeChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~-~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+|.|+|. |+||..+.+.+.+.|++++. .|+.... +++ .|...+.+++++.+. .++|++++++|+..+.++++++
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~~-~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCVG-YDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 6999999 99999999999999998764 4544211 011 356666787776543 2689999999999888888777
Q ss_pred HHcCC--CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 136 MEAEL--DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 136 ie~GI--k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
...-- +.||..+++.+. +..++.+..+
T Consensus 80 ~~~l~~g~ivid~st~~~~-~t~~~~~~~~ 108 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYK-DSLRRYKLLK 108 (298)
T ss_pred HhhCCCCCEEEECCCCCcc-cHHHHHHHHH
Confidence 65411 456665565555 4444444433
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=66.35 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc---------CccccccHHHH-hhccCCcEEEEeeCh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---------GLPVFNSVAEA-KAETKANASVIYVPP 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~---------GvPVy~sl~e~-~~~~~~DVaIdfVPp 125 (181)
..+||+|+|+||..|+..++.+.+. +++|.........|+.+. .++.+.++++. ++ ++|+++..+|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCCH
Confidence 5579999999999999999999886 889887655333343221 12223333332 23 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
..+.+.+..+ +.|.+.|-+ +.-|.-++-
T Consensus 115 ~~s~~i~~~~-~~g~~VIDl-Ss~fRl~~~ 142 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVDL-SADFRLRDI 142 (381)
T ss_pred HHHHHHHHHH-hCCCEEEEc-CchhccCCc
Confidence 9999999995 788665554 776665554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=64.86 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=68.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCC---eE------E------cCccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGG---TE------H------LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G---~e------i------~GvPVy~sl~e~~~~~~~DVaI 120 (181)
++||.|+|+ |.||......+.+.|.++. .+++. ... .. . .++.+..+.+++.+ ++|+++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi 76 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLIL 76 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEE
Confidence 358999999 9999999999998888854 33332 110 00 0 13445567777776 799999
Q ss_pred EeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHh
Q 030220 121 IYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed~~~l~~~a 162 (181)
+++|+....++++.+... . =+.|+.++.|++.+...++.+..
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l 120 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVL 120 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHH
Confidence 999999888888776653 1 13456556688876544444433
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=59.07 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=62.0
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC--eEE--cCccc----cc---cHHHHhhccCCcEEEEeeC-----
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEH--LGLPV----FN---SVAEAKAETKANASVIYVP----- 124 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G--~ei--~GvPV----y~---sl~e~~~~~~~DVaIdfVP----- 124 (181)
|+|.|+||++|+.+++.+.+.+++|.+.+.+.... ++. .|+.+ |+ ++.++++ ++|+++..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~~ 78 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHPS 78 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCCC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchhh
Confidence 78999999999999999999999999877644210 010 23322 22 4666666 8999999999
Q ss_pred -hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 -PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 -p~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.....++.|.++||+.+|-
T Consensus 79 ~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 79 ELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhhHHHhhhccccceEEE
Confidence 557888999999999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=65.34 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=65.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeee-cCCCCCCeEEc---Cc-------------cccc-cHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG-VTPKKGGTEHL---GL-------------PVFN-SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVag-VdP~~~G~ei~---Gv-------------PVy~-sl~e~~~~~~~DV 118 (181)
+.||+|+|+||.+|+.+.+.+.+. .+++++. .++...|+.+. ++ .+-. +.++ .+ ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc--CCCE
Confidence 378999999999999999988885 7788876 55555553332 11 1111 2232 23 7999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
+++++|...+.+.++.+.++|++.|.. +.-|.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDl-s~~fR 111 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSN-ASAHR 111 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEEC-Cchhc
Confidence 999999999999999999999987766 65443
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=64.83 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=58.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |.||+.+.+.+.+.|.+|+ ++|+..... .-.|+..+.+.+++.. .++|++++++|+....+++++
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~~~~~~~e~~~-~~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVSFFRDPDDFCE-EHPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCeeeCCHHHHhh-CCCCEEEEecCHHHHHHHHHh
Confidence 3468999998 9999999999988888877 566554211 1146777888888753 268999999999999998888
Q ss_pred H
Q 030220 135 A 135 (181)
Q Consensus 135 a 135 (181)
.
T Consensus 112 l 112 (304)
T PLN02256 112 L 112 (304)
T ss_pred h
Confidence 6
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=63.38 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCcchhhHHHHH--------hCCeEeeecCCCC-----CCeEE---------cCcccc--c--cHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKK-----GGTEH---------LGLPVF--N--SVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~--------~g~~IVagVdP~~-----~G~ei---------~GvPVy--~--sl~e~~~ 112 (181)
+||+|+|+ |+.|+.+++.+.+ .++++|+..|... .|-.+ ..+..| . +++++++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 37999999 9999999998766 2567887544321 11000 011122 2 5666654
Q ss_pred ccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 113 ETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 113 ~~~~DVaIdfVPp~----~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.++|++|+++|.. .+.+....++++|++.|.. .-|.-.....+|.++|++-.
T Consensus 80 -~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa-NKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 80 -IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA-NKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred -CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC-CHHHHHhhHHHHHHHHHHcC
Confidence 4799999999732 3678889999999999876 44444456678888887643
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00049 Score=59.03 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=68.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccccccHHHHhhccCCcEEEEeeChHHHHH-HH---
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AI--- 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~--- 132 (181)
||.|+|. |+||+.+.+.+.+.|++|+ +.|+...-- . -.|.....+.+++.+ ++|++++++|.....+ ++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~ 76 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGE 76 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence 5889999 9999999999999999876 556543110 1 135666778888887 7999999999864433 33
Q ss_pred HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 133 MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 133 ~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.++.. .- +.|+. ++.++..+..++.+..++.
T Consensus 77 ~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~ 110 (291)
T TIGR01505 77 NGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK 110 (291)
T ss_pred chHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc
Confidence 222322 11 24555 5566677777777777654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00027 Score=61.49 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=71.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME- 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~e- 134 (181)
||.++|. |+||+...+.+.+.|+++. ...+|.. +.. .|..+..+..|+.+ ++|++++++|... +.+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence 6999999 9999999999999898864 3445532 112 46777888888877 8999999999873 3444321
Q ss_pred --HHHcCC--CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 --AMEAEL--DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 --aie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++..-- +.||. ++..+..+..++.+.++...+
T Consensus 77 ~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 77 NGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence 222211 23444 777888888888888765443
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00028 Score=60.71 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=71.6
Q ss_pred EEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeCh-HHHHHHH---HHH
Q 030220 63 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI---MEA 135 (181)
Q Consensus 63 VvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~---~ea 135 (181)
++|. |.||....+.+.+.|+++. ..|+.... +. -.|..+.++.+++.+ ++|++++++|+ ..+.+++ +..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchH
Confidence 4688 9999999999999898865 44544311 01 136777889999888 79999999998 4456665 344
Q ss_pred HHcCC-CEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 136 MEAEL-DLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 136 ie~GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+.-- ..+++-+++++.+...++.+.+++..+.
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 43322 2244447799999999999888765443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=63.48 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=62.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCeEEc---Cccccc------------cHH-HHhhccCCcEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEHL---GLPVFN------------SVA-EAKAETKANASV 120 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~ei~---GvPVy~------------sl~-e~~~~~~~DVaI 120 (181)
+||+|+|++|.+|+.+.+.+.+. ++++++.++ ....|+.+. ....|+ +++ +.. .++|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence 47999999999999999988885 589887754 222333221 111111 111 222 3799999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+++|+....+.++++.++|++.|.. +.-|
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDl-sg~f 107 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSN-ASNH 107 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEEC-Chhh
Confidence 9999999999999999999997665 5443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00093 Score=55.39 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--------E--cCcc--cc-ccHHHHhhccCCcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------H--LGLP--VF-NSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--------i--~GvP--Vy-~sl~e~~~~~~~DVaIdfVP 124 (181)
+||.|+|++|+||+...+.+.+.|.+++. .++.... .. + .|+. +. .+..+..+ ++|++|+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v-~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIII-GSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEE-EEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECC
Confidence 47999986699999999999988888653 2432210 00 0 1221 22 25566666 7899999999
Q ss_pred hHHHHHHHHHHHHc--CCCEEEEeCCCCCH
Q 030220 125 PPFAAAAIMEAMEA--ELDLVVCITEGIPQ 152 (181)
Q Consensus 125 p~~a~~~~~eaie~--GIk~IV~iTtG~~~ 152 (181)
+....++++++... + +.|+-++-|++.
T Consensus 78 ~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 WDHVLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence 99999998876432 4 778877889886
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00017 Score=67.48 Aligned_cols=92 Identities=12% Similarity=0.215 Sum_probs=71.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-----CCCeEE---cCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-----~~G~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
..+|+|+|+ |.+|+.+..++...|.+++-++-++ ..+.+. .|+++ .+++|+.+ +.|++++.+|... +
T Consensus 36 gKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~-q 110 (487)
T PRK05225 36 GKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQ-H 110 (487)
T ss_pred CCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHH-H
Confidence 477999999 9999999999999999988665443 212122 58887 57899888 8999999999994 7
Q ss_pred HHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030220 130 AAIMEAMEAELD--LVVCITEGIPQHD 154 (181)
Q Consensus 130 ~~~~eaie~GIk--~IV~iTtG~~~ed 154 (181)
..+.+-+....| .+++|+-||..+.
T Consensus 111 ~~v~~~i~p~LK~Ga~L~fsHGFni~~ 137 (487)
T PRK05225 111 SDVVRAVQPLMKQGAALGYSHGFNIVE 137 (487)
T ss_pred HHHHHHHHhhCCCCCEEEecCCceeee
Confidence 777766666554 4899999999764
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00044 Score=59.32 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=67.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE--cC-ccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH--LG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei--~G-vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
++|.|+|. |.||......+.+.|.+|. ++|+..... .. .| +....+..+..+ ++|++|+++|+..+.+.+++
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~ 76 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQ 76 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHH
Confidence 36999998 9999999999988888865 556543210 11 12 222322224444 79999999999999999888
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.... .-..+|.-+.+++.+....+.+.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~ 104 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL 104 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh
Confidence 7765 33345554777887777766654
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00042 Score=62.65 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc-------C---ccccc-cHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G---LPVFN-SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~-------G---vPVy~-sl~e~~~~~~~DVaIdfVPp 125 (181)
+.||.|+|++|--|-.+.+.+... +.++......+..|+.+. | ++... +.+++ ...++|++++++|.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecCc
Confidence 578999999999999999999885 888665544443443321 1 12221 23333 33369999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..+.+.+.+.++.|++ |+-.++-|..+|...-+++
T Consensus 81 g~s~~~v~~l~~~g~~-VIDLSadfR~~d~~~ye~~ 115 (349)
T COG0002 81 GVSAELVPELLEAGCK-VIDLSADFRLKDPEVYEKW 115 (349)
T ss_pred hhHHHHHHHHHhCCCe-EEECCcccccCCHHHHHHh
Confidence 9999999999999999 6666888887766555444
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00022 Score=64.08 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEe-eecCCC--------CCCeE-E------cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPK--------KGGTE-H------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~--------~~G~e-i------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+++|.|+|+ |.+|++..+.+.+.|.++. .+-||. +.... + .++...++++++.+ ++|++++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVI 77 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEE
Confidence 368999999 9999999999999876643 243221 11111 1 24666778999988 7999999
Q ss_pred eeChHHHHHHHHHHH---HcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 122 YVPPPFAAAAIMEAM---EAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 122 fVPp~~a~~~~~eai---e~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+|..+..++++..- ..+.+.|++ |-||-.+....+-|..+++
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~~-sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVSA-TKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred ECChHHHHHHHHHHhhhccCCCeEEEE-eccccCCCcchHHHHHHHH
Confidence 999999999999863 567777777 9999988877777776544
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=61.59 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=64.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEE--cC--ccccc-cHHHHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEH--LG--LPVFN-SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei--~G--vPVy~-sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
++.||+|+|+||..|++..+.+.+. ..++++..+.+..|+.+ .| +++-+ +..+ .+ ++|+++.++|+..+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~--~vD~vFla~p~~~s 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FS--QVQLAFFAAGAAVS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hc--CCCEEEEcCCHHHH
Confidence 4578999999999999999999964 45566556665556433 22 22221 2222 24 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC
Q 030220 129 AAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.+.+.++.++|++.| -.+.-|
T Consensus 80 ~~~v~~~~~~G~~VI-DlS~~f 100 (336)
T PRK05671 80 RSFAEKARAAGCSVI-DLSGAL 100 (336)
T ss_pred HHHHHHHHHCCCeEE-ECchhh
Confidence 999999999998755 335444
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00059 Score=62.15 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecC--CCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeChH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVT--PKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPPP--- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVd--P~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~--- 126 (181)
..+|+|+|+ |..|....+.+.+ +|++++|-+| +.+.++. .|+||+.+ +.+..+++++|.+++..|..
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 367999999 9999988888765 3799999876 3443434 89999986 55556678999999999874
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 030220 127 FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~ 145 (181)
...+.++.|-+.|++..+.
T Consensus 206 ~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLV 224 (451)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 4567788888889887665
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00029 Score=62.43 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=65.7
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC---------------CeEE-cCccccccHHHHhhccCCcEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG---------------GTEH-LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~---------------G~ei-~GvPVy~sl~e~~~~~~~DVa 119 (181)
+.++||.|+|+ |.||......+.+.|..++...++... +..+ ..+.+.++++++.+ ++|++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlV 81 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVV 81 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEE
Confidence 44688999999 999999999888877333333332210 0001 12345557777776 78999
Q ss_pred EEeeChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHH
Q 030220 120 VIYVPPPFAAAAIMEAMEA-EL-DLVVCITEGIPQH 153 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~-GI-k~IV~iTtG~~~e 153 (181)
+++||+....++++++... +- ..++.++-|+...
T Consensus 82 ilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 82 VMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 9999999999999988754 22 2477778999864
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00052 Score=60.89 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCCeEE--cC--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEH--LG--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G~ei--~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||+|+|+||..|+..++.+.+.| +++++.......|+++ .| +++.+.-.+..+ ++|+++.++|...+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHHH
Confidence 589999999999999999998844 4667665554445443 22 333321112233 79999999999999999
Q ss_pred HHHHHHcCCCEEE
Q 030220 132 IMEAMEAELDLVV 144 (181)
Q Consensus 132 ~~eaie~GIk~IV 144 (181)
+..++++|. .||
T Consensus 80 ~~~~~~~G~-~VI 91 (334)
T PRK14874 80 APKAAAAGA-VVI 91 (334)
T ss_pred HHHHHhCCC-EEE
Confidence 999999998 344
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0003 Score=63.16 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=67.3
Q ss_pred EEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC--------------------eE--EcCccccccHHHHhhccCCc
Q 030220 61 VICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------------------TE--HLGLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G--------------------~e--i~GvPVy~sl~e~~~~~~~D 117 (181)
|+|.|+ |++|+.+++.+.+ .++++|+..|+.... .+ -.|++++.+++++++ ++|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCC
Confidence 579999 9999999998776 589999876633210 00 135788889999986 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++++|........+..++.|.+.|+.
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEE
Confidence 9999999999999999999999999987
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=60.97 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=75.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEee-ecCCCCCC---------eEE--cCccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVG-GVTPKKGG---------TEH--LGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVa-gVdP~~~G---------~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
++||+|+|+ |+.|+.++..+.+.+ .+|.. +-++.+.. -+- .++-=.+.+.++++ +.|++|...|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence 468999999 999999999888864 88553 32221111 011 12222335788888 6699999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+.....+++.|++.|++-+-. |..-+. ..++.+.+++-++.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDt-s~~~~~--~~~~~~~a~~Agit 118 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDT-SYYEEP--PWKLDEEAKKAGIT 118 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEc-ccCCch--hhhhhHHHHHcCeE
Confidence 999999999999999998765 555444 37788888776654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00027 Score=62.87 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=68.5
Q ss_pred EEEEccCCCCcchhhHHHHHh-CC-e-EeeecCCCC--------CCe--EEcCccccc--cHHHHhhccCCcEEEEeeCh
Q 030220 61 VICQGITGKNGTFHTEQAIEY-GT-K-MVGGVTPKK--------GGT--EHLGLPVFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~-g~-~-IVagVdP~~--------~G~--ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
|+|+|+ |.+|+.+++.+.+. ++ + ++++-|+.+ .+. +..-+-+.+ +++++++ ++|++|.++||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 789999 99999999998886 45 5 455555443 111 111122333 4777777 78999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.....+++.|+++|++-|= +.+-.+++.++.+.+++-.+
T Consensus 78 ~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~ 116 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGV 116 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTS
T ss_pred chhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCC
Confidence 9999999999999998554 44467788888888875444
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00063 Score=53.81 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCC--------------CCeEE-cCccccccHHHHhhccCCcEEEEee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKK--------------GGTEH-LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~--------------~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
||.|+|+ |++|++.+..+.+.|.++.- .-++.. .+.++ ..+.+.++++++++ +.|++|+.+
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEecc
Confidence 6999999 99999999999888866442 222110 00011 24567778999998 899999999
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 124 PPPFAAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 124 Pp~~a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
|..+..+.++++... .-..++..+-||
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999988763 334455558898
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00072 Score=61.50 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=67.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCC-CeEEcCcccccc---HHHHhhccCCcEEEEeeChHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNS---VAEAKAETKANASVIYVPPPF--- 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~-G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~~--- 127 (181)
..|++|+|+ |..|..+.+.+.+ .|++++|-+|++.. +..+.|+||+.+ +.++.+++++|.+++..|...
T Consensus 125 ~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~ 203 (445)
T TIGR03025 125 LRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEAR 203 (445)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHH
Confidence 467999999 9999998888765 37999998875432 235789999986 455566778999999988643
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030220 128 AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~ 145 (181)
..+.+++|.+.|++..+.
T Consensus 204 ~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 204 ILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 457888999999987665
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=57.91 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=68.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~- 133 (181)
++|.|+|. |+||....+.+.+.|+++. ..|+.... ++. .|.....+..++.+ ++|++++++|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcC
Confidence 47999999 9999999999998898865 45554321 111 36667788888877 7899999999986 444432
Q ss_pred --HHHHcCC---CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAEL---DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GI---k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
..++ ++ +.++..+|+ +.++..++.+..++..
T Consensus 78 ~~~i~~-~l~~g~lvid~sT~-~p~~~~~l~~~l~~~g 113 (296)
T PRK15461 78 ENGVCE-GLSRDALVIDMSTI-HPLQTDKLIADMQAKG 113 (296)
T ss_pred cccHhh-cCCCCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence 1222 22 245664555 5566666666665443
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00059 Score=59.00 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=63.5
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE-------cC--------------ccccccHHHHhhc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH-------LG--------------LPVFNSVAEAKAE 113 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei-------~G--------------vPVy~sl~e~~~~ 113 (181)
++.++|.|+|+ |.||..+...+.+.|++++. +|+..... .. .| +...++.++..+
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 78 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS- 78 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc-
Confidence 34578999999 99999999999888988663 44432110 00 01 223456777666
Q ss_pred cCCcEEEEeeChHH--HHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHH
Q 030220 114 TKANASVIYVPPPF--AAAAIMEAMEA--ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 114 ~~~DVaIdfVPp~~--a~~~~~eaie~--GIk~IV~iTtG~~~ed~~~l 158 (181)
++|++|+++|+.. ..++..++-.. +-..|+..|.|++.+++.+.
T Consensus 79 -~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 79 -GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126 (311)
T ss_pred -cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhh
Confidence 7999999999875 34455443331 11234456889987655543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=55.65 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=58.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCccc-cc---cHHHHhhc----cC-CcEEEEeeCh---
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPV-FN---SVAEAKAE----TK-ANASVIYVPP--- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvPV-y~---sl~e~~~~----~~-~DVaIdfVPp--- 125 (181)
+|+|.|+||+.|+.+++.+.+.|.++.+.+- |.+... .+..+++ |. ++.++.+. .. +|.++...|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 4899999999999999999999999887643 432110 1111111 12 34455421 14 7888777663
Q ss_pred --HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --~~a~~~~~eaie~GIk~IV~iT 147 (181)
......++.|.++|++.+|..+
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEee
Confidence 4566788889999999988754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00048 Score=57.45 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=40.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.|+|++|+||+..++.+.+.|+.+. +. ++|++|+++|.....+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~--~~DlVilavPv~~~~~~i~~~ 51 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IK--KADHAFLSVPIDAALNYIESY 51 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------EC--CCCEEEEeCCHHHHHHHHHHh
Confidence 4799999999999999999999998864 12 567777777777776666654
|
|
| >PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=61.44 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=63.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEEcCccccccHHH---HhhccCCcEEEEeeChH---HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNSVAE---AKAETKANASVIYVPPP---FAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei~GvPVy~sl~e---~~~~~~~DVaIdfVPp~---~a~ 129 (181)
.+++|+|+ |..|+.+++.+.+. |++++|-+|.+..+.++.|+||+.+.++ ..+++.+|+ ++.+|.. .-.
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~ 224 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTH 224 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHH
Confidence 57999999 99999999887763 8999999986654456889999987553 344446776 7778733 455
Q ss_pred HHHHHHHHcCCCEEE
Q 030220 130 AAIMEAMEAELDLVV 144 (181)
Q Consensus 130 ~~~~eaie~GIk~IV 144 (181)
+.++++.+.|++.|.
T Consensus 225 ~il~~l~~~gv~~V~ 239 (476)
T PRK15204 225 FWLRELSKHHCRSVT 239 (476)
T ss_pred HHHHHHhhcCCeEEE
Confidence 788889888987443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00052 Score=60.89 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=66.3
Q ss_pred ceEEEEccCCCCcchhhHHH-HHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH--HHH
Q 030220 59 TRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--MEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~-~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~--~ea 135 (181)
++|.|+|+ |++|+.+.+.+ ...|++|+ +.||......-.++....+++++++ ++|++++.+|.......+ ++.
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~ 222 (332)
T PRK08605 147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNADL 222 (332)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHH
Confidence 57999999 99999999988 44688877 5676542211123444458999988 799999999976655544 222
Q ss_pred H---HcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 136 M---EAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 136 i---e~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+ +.|. .+|+.+.|..+.+ ..|.++.+.
T Consensus 223 l~~mk~ga-ilIN~sRG~~vd~-~aL~~aL~~ 252 (332)
T PRK08605 223 FKHFKKGA-VFVNCARGSLVDT-KALLDALDN 252 (332)
T ss_pred HhcCCCCc-EEEECCCCcccCH-HHHHHHHHh
Confidence 2 3332 5777677766644 444444443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0024 Score=57.60 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
..+|+|+|+.|.||+...+.+.+.|+++. ++|+.. ..+.+++.+ ++|++|+++|.....+.+++...
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l~~ 164 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARLPP 164 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHHhC
Confidence 36799999669999999999999998865 555432 135667766 79999999999999999988655
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 138 AELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 138 ~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..-..||.=.+.+...-+..+.+.
T Consensus 165 l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 165 LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCCCcEEEECCCccHHHHHHHHHh
Confidence 333345543455545555555554
|
|
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00092 Score=61.00 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=63.7
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCC--CCCeEEcCcccccc--HHHHhhccCCcEEEEeeC---hHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~--~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVP---p~~ 127 (181)
..+++|+|+ |..|..+.+.+.+ .|++++|-+|.+ ..+.++.|+||+.+ +.+..+++++|.+++..| ++.
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~~ 203 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAED 203 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHHH
Confidence 367999999 9999988888764 389999988744 34456789999975 445566678998999888 455
Q ss_pred HHHHHHHHHHcCC
Q 030220 128 AAAAIMEAMEAEL 140 (181)
Q Consensus 128 a~~~~~eaie~GI 140 (181)
..+.++.|.+.|+
T Consensus 204 ~~~ll~~l~~~~v 216 (456)
T TIGR03022 204 MARLVRKLGALHF 216 (456)
T ss_pred HHHHHHHHHhCCC
Confidence 6778888888888
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=57.88 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=60.0
Q ss_pred ceEEEE----ccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-----------E--EcCcccc-ccHH---HHhhccCCc
Q 030220 59 TRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----------E--HLGLPVF-NSVA---EAKAETKAN 117 (181)
Q Consensus 59 ~rViVv----GatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-----------e--i~GvPVy-~sl~---e~~~~~~~D 117 (181)
++|+|. |+||..|+.+++.+.+.|.+|.+......... + ..|+.++ .++. +++...++|
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~d 132 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGFD 132 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCcc
Confidence 679999 99999999999999999999886543221100 0 0133332 3443 444334799
Q ss_pred EEEEeeC--hHHHHHHHHHHHHcCCCEEEEeC
Q 030220 118 ASVIYVP--PPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 118 VaIdfVP--p~~a~~~~~eaie~GIk~IV~iT 147 (181)
++|.+.. ...++.+++.|.++|++.+|.++
T Consensus 133 ~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 133 VVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 9998753 34567778888889998776545
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=59.62 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH--h-CCeEeeecCCCCCCeEE--c--CccccccHHHHh-hccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE--Y-GTKMVGGVTPKKGGTEH--L--GLPVFNSVAEAK-AETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~--~-g~~IVagVdP~~~G~ei--~--GvPVy~sl~e~~-~~~~~DVaIdfVPp~~a 128 (181)
...||+|+|+||--|+...+.+.+ . .++++...+.+..|+.+ . .+++. ++++.. + ++|+++.++|+..+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHHH
Confidence 457899999999999999999998 3 67777655555555444 1 24444 445432 3 79999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC
Q 030220 129 AAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.+.+.++.++|++.|=. +.-|
T Consensus 80 ~~~~~~~~~~g~~VIDl-S~~f 100 (336)
T PRK08040 80 AAYAEEATNAGCLVIDS-SGLF 100 (336)
T ss_pred HHHHHHHHHCCCEEEEC-ChHh
Confidence 99999999999975533 5444
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=60.70 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=69.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
++|.|+|++|.||+...+.+.+.|.++.+ +.++..... .-.|+.+.++.++..+ ++|++|+++|+....++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence 47999997799999999999998888653 333332100 1136666667888776 799999999999999988887
Q ss_pred HHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 136 MEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 136 ie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
... .-..++.-.+.+...-...+.+..
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 654 222233324445555555665554
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=63.39 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=70.8
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecC--CCCCCeEEcCcccccc--HHHHhhccCCcEEEEeeC---hHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVP---PPF 127 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd--P~~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVP---p~~ 127 (181)
...++++|+|+ |.-|....+.+... .+.+||.+| |.+.|+++.|+|||.. ++++.++.++|-+++..| .+.
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~ 192 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE 192 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence 44588999999 99999999988884 799999888 6677889999999995 667777788887777776 466
Q ss_pred HHHHHHHHHHcCCCEE
Q 030220 128 AAAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a~~~~~eaie~GIk~I 143 (181)
.++..+.|-+.|++.=
T Consensus 193 ~~~i~~~l~~~~~~v~ 208 (588)
T COG1086 193 RRRILLRLARTGIAVR 208 (588)
T ss_pred HHHHHHHHHhcCCcEE
Confidence 7788888888886553
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00097 Score=59.58 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred eEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCCC-----------------------CeE--EcC--ccccc--c
Q 030220 60 RVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKG-----------------------GTE--HLG--LPVFN--S 106 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~~-----------------------G~e--i~G--vPVy~--s 106 (181)
||+|.|+ |+.|+.+.+.+.+. +++|++..|.... |+. +.| ++++. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 5899999 99999999998875 4899986553221 111 122 56664 5
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++++ .+.++|+++.++++....+.+..++++|.+.|++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 66654 3458999999999999999999999999999888
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00091 Score=53.36 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe--------EE-----------------cC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT--------EH-----------------LG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~--------ei-----------------~G--vPVy~--sl~ 108 (181)
.||+|+|+ |+||+.+.+.+.+ .++++++..|+..... .. .| ++++. +.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 47999999 9999999998876 5999999877521110 01 11 12222 344
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++ .+.++|++|+++-.-...+.+..-+++|.|.|+.
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 443 3457899999977767777777888899999988
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=58.86 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=60.9
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCCeEE--cCc-cccccHH-HHhhccCCcEEEEeeChHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEH--LGL-PVFNSVA-EAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G~ei--~Gv-PVy~sl~-e~~~~~~~DVaIdfVPp~~a 128 (181)
+...||+|+|+||.-|+...+.+.+.+ ++++........|+.+ .|. .++.+++ +..+ ++|+++.++|...+
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~s 82 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSIS 82 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHHH
Confidence 445789999999999999999998844 4555443444444333 221 2222222 3334 79999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
.+.+.++.++|++.|
T Consensus 83 ~~~~~~~~~~g~~VI 97 (344)
T PLN02383 83 KKFGPIAVDKGAVVV 97 (344)
T ss_pred HHHHHHHHhCCCEEE
Confidence 999999999998755
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=59.23 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-------Ce-EeeecCCCCC-------------CeE-EcC------ccccccHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKG-------------GTE-HLG------LPVFNSVAE 109 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-------~~-IVagVdP~~~-------------G~e-i~G------vPVy~sl~e 109 (181)
.+||.|+|+ |.+|++++..+.+.+ .+ ...+-|+... ... +.| +.+.+++++
T Consensus 11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 368999999 999999999887765 34 2334444210 000 123 334567888
Q ss_pred HhhccCCcEEEEeeChHHHHHHHHHHHH--c--CCCEEEEeCCCCCHHH
Q 030220 110 AKAETKANASVIYVPPPFAAAAIMEAME--A--ELDLVVCITEGIPQHD 154 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~~a~~~~~eaie--~--GIk~IV~iTtG~~~ed 154 (181)
+++ +.|++|+.||+....++++++-. . .-..+|.++.|+..++
T Consensus 90 av~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 90 AVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 887 89999999999999999999875 2 1225776799998655
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=58.61 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=70.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCe-EEcCccc----cccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT-EHLGLPV----FNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~-ei~GvPV----y~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+|.|+|. |.||..+.+.+.+.|.++. .+.|+..... .-.++.+ ..+++++.+ ++|++|+++|+....++++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl~ 78 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALLA 78 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 6899999 9999999999999887643 3566654210 0112322 245677766 7999999999999999988
Q ss_pred HHHHc--CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 134 EAMEA--ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+.... .-..+|.-..+++.+-...+.+.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 88752 23345555788888777777665
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00087 Score=64.97 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |+||+.+.+.+.+.|.+|+ ++|+..... .-.|+..+.+++++.+. ++|+++++||+....+++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLKS 444 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHHH
Confidence 4578999997 9999999999998888877 556543211 11466677888887642 48999999999999999988
Q ss_pred HHH
Q 030220 135 AME 137 (181)
Q Consensus 135 aie 137 (181)
...
T Consensus 445 l~~ 447 (667)
T PLN02712 445 LPF 447 (667)
T ss_pred HHH
Confidence 764
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00079 Score=60.09 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=56.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCe---EeeecCCCCCCeEE--cC--ccccc-cHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LG--LPVFN-SVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~---IVagVdP~~~G~ei--~G--vPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
||+|+|+||..|+..++.+.+.++. ++........|+.+ .| +.+.+ +.++ .+ ++|+++.++|...+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~-~~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIES-FE--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHH-hc--CCCEEEECCCHHHHHHH
Confidence 5899999999999999998886555 33222333334333 22 22222 2222 34 79999999999999999
Q ss_pred HHHHHHcCCC
Q 030220 132 IMEAMEAELD 141 (181)
Q Consensus 132 ~~eaie~GIk 141 (181)
+..++++|++
T Consensus 78 a~~~~~~G~~ 87 (339)
T TIGR01296 78 APKAAKCGAI 87 (339)
T ss_pred HHHHHHCCCE
Confidence 9999999985
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=58.39 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=70.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~e 134 (181)
++|.|+|+ |++|+.+.+.+...|++|. +.|+.....+ -.|+.-+.+++|+.+ ++|++++.+|-... ..++.+
T Consensus 193 ktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~ 268 (385)
T PRK07574 193 MTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLFDA 268 (385)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHhCH
Confidence 56999999 9999999999999999987 5676531111 235655789999998 89999999994433 333322
Q ss_pred ----HHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 135 ----AMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 135 ----aie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++.| ..+|+++-| ..-|...|.++.+.-.++
T Consensus 269 ~~l~~mk~g-a~lIN~aRG-~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 269 DVLSRMKRG-SYLVNTARG-KIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhcCCCC-cEEEECCCC-chhhHHHHHHHHHhCCcc
Confidence 22223 246774554 444666777766555443
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=55.10 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-eEEcCcccc-------ccHHHHhhccCCcEEEEeeCh----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEHLGLPVF-------NSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
+||+|.|+||..|+.+++.+.+.|.+|.+.+- +.... ....|+.++ .++.++++ ++|+++.+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 37999999999999999999999999887653 22110 001233322 24566666 78998887642
Q ss_pred ---------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
......++.|.++|++.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 12356677788899998877554
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00085 Score=57.76 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=64.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------EcC-ccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------i~G-vPVy~sl~e~ 110 (181)
..+|.|+|+ |.||..++..+...|++++ .+|+.....+ ..+ +.+.++.+ .
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 80 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-E 80 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-H
Confidence 467999999 9999999999999999876 4444321100 001 22333444 4
Q ss_pred hhccCCcEEEEeeC--hHHHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHHHH
Q 030220 111 KAETKANASVIYVP--PPFAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVINFT 160 (181)
Q Consensus 111 ~~~~~~DVaIdfVP--p~~a~~~~~eaie~-GIk~IV-~iTtG~~~ed~~~l~~ 160 (181)
.+ ++|++|..+| ++.-+.+..++.+. .-..|+ ..|.+++..++.+...
T Consensus 81 ~~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~ 132 (295)
T PLN02545 81 LR--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQ 132 (295)
T ss_pred hC--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 45 7999999999 77766666665543 222344 3589999887766543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0026 Score=58.15 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=69.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
..+|.|+|+ |++|+.+.+.+...|+++++ .|+..... ...|+..+.+++|+.. ++|++++.+|-. ....++.
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~afG~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~ 274 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKPFNCNLLY-HDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMFN 274 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEEE-ECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHhC
Confidence 356999999 99999999999999999874 67653111 1236666679999998 799999999943 3333332
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 -eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +-. .+|+ |.-=..-|...|.++.+.-.+
T Consensus 275 ~~~l~~mk~ga~lIN-~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 275 KERIAKMKKGVLIVN-NARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred HHHHhhCCCCeEEEE-CCCCchhhHHHHHHHHHcCCc
Confidence 22222 222 3566 544455577777777654444
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=55.95 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----------CeE-E------cCccccccHHHHhhccCCcEEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-H------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----------G~e-i------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+||.|+|+ |.||......+.+.|.+|. .+++... +.. + .+++++.++++... .++|++++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~Dliii 77 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-DNATCIIL 77 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-CCCCEEEE
Confidence 36999999 9999999999988887754 4443210 101 1 13345667777652 26899999
Q ss_pred eeChHHHHHHHHHHHH-c-C-CCEEEEeCCCCCH
Q 030220 122 YVPPPFAAAAIMEAME-A-E-LDLVVCITEGIPQ 152 (181)
Q Consensus 122 fVPp~~a~~~~~eaie-~-G-Ik~IV~iTtG~~~ 152 (181)
+||+....++++++.. . + -..|+..+-|+..
T Consensus 78 avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 78 AVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 9999999999998876 3 2 2246667999955
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0038 Score=52.76 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=70.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCe----EEcCccccc--cHHHHhhccCCcEEEEeeChHH----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT----EHLGLPVFN--SVAEAKAETKANASVIYVPPPF---- 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~----ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~~---- 127 (181)
+||+|+|+||+-|+.+.+....+|-+++|.| ||.+... .+..--||+ ++++.+. ..|++|....+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~~~~~ 78 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGASDND 78 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc--CCceEEEeccCCCCChh
Confidence 5899999999999999999999999999975 4666431 123334555 3556666 7899999876541
Q ss_pred -----HHHHHHHHHHc-CCCEEEEe----------------CCCCCHHHHHHHHHHhh
Q 030220 128 -----AAAAIMEAMEA-ELDLVVCI----------------TEGIPQHDMVINFTRVN 163 (181)
Q Consensus 128 -----a~~~~~eaie~-GIk~IV~i----------------TtG~~~ed~~~l~~~ak 163 (181)
+.+.+-.+++. |++..+.+ |..||++......+.++
T Consensus 79 ~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 79 ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHH
Confidence 12234455555 77764332 36788877766666665
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=59.26 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=67.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-----EEcC--ccccccHHHHhhcc-CCcEEEEeeChH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-----EHLG--LPVFNSVAEAKAET-KANASVIYVPPP-FA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-----ei~G--vPVy~sl~e~~~~~-~~DVaIdfVPp~-~a 128 (181)
.+|.|+|. |.||+..+..+.+.|++|.. ..++.+... ...| +..+++++|+.+.. ++|++++++|+. .+
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 47999999 99999999999999998663 233332110 0114 33678999998642 589888886555 66
Q ss_pred HHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 129 AAAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 129 ~~~~~eaie~---GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++++.+... | +.|+-.+++.+..-. ++.+..++..+-
T Consensus 81 ~~vi~~l~~~L~~g-~iIID~gn~~~~dt~-~r~~~l~~~Gi~ 121 (470)
T PTZ00142 81 DETIDNLLPLLEKG-DIIIDGGNEWYLNTE-RRIKRCEEKGIL 121 (470)
T ss_pred HHHHHHHHhhCCCC-CEEEECCCCCHHHHH-HHHHHHHHcCCe
Confidence 6666665543 3 345554555555444 444444444443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0028 Score=61.48 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+|+ |+||+.+.+.+.+.|++|++ +|+..... .-.|+..+.+.+++..+ ++|+++++||+....+++++
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~~-~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~ 127 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVLA-HSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKS 127 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHh
Confidence 3468999998 99999999999998988764 55542111 12467778888886532 58999999999999998887
Q ss_pred HH
Q 030220 135 AM 136 (181)
Q Consensus 135 ai 136 (181)
..
T Consensus 128 l~ 129 (667)
T PLN02712 128 LP 129 (667)
T ss_pred hh
Confidence 64
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0018 Score=58.43 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCe---EeeecCCCCCCeEE--c--Cccccc-cHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--L--GLPVFN-SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~---IVagVdP~~~G~ei--~--GvPVy~-sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+..||+|+|+||-.|+...+.+.+ .+|+ +....+.+..|+.+ . .+.+.+ +.+++ + ++|+++..+|.+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGEV 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChHH
Confidence 346899999999999999999995 6888 55455555555443 1 244443 33333 4 7999999999999
Q ss_pred HHHHHHHHHHcCCCEE
Q 030220 128 AAAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a~~~~~eaie~GIk~I 143 (181)
+.+.+..+.++|.+.|
T Consensus 81 s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 81 SRQFVNQAVSSGAIVI 96 (347)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999997665
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=58.36 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ ++||..... +..|++ +.+++|+.+ ++|++++.+|-.. ....+ +
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccCH
Confidence 467999999 9999999999999999977 667654221 112443 458999988 7999999999644 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+.+++ +- ..+|+++.|-.+ |...|.++.+.-.++
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~ 260 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA 260 (333)
T ss_pred HHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence 33333 11 246775666544 666666666554443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=57.91 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--------------------cC-ccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--------------------LG-LPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--------------------~G-vPVy~sl~e~~~~~~~ 116 (181)
+||.|+|. |.||...+..+.+.|+++++ ..|+.+...-. .| +....+++++.+ ++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a 77 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA 77 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence 37999999 99999999999888998764 23333221000 12 445557777766 79
Q ss_pred cEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHH
Q 030220 117 NASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 117 DVaIdfVPp~----------~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~ 159 (181)
|++++++|.. .+.++++...+. .-..+|+..+.++.....++.
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 9999999965 366666655543 112234446666655555553
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=55.80 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeE---EcCc--cccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~e---i~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.+|.|+|+ |.||......+.+.|. ++. ++|+.....+ -.|+ .+..+.++..+ ++|++|+++|+....++
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~v 82 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIV-GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAV 82 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEE-EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHHH
Confidence 57999998 9999999999988875 443 5565431100 1232 34557777776 79999999999988888
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+++.... +-..+|.-..++..+-+..+.+.
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred HHHHHhhCCCCCEEEeCccchHHHHHHHHHh
Confidence 7766543 22234443666666555555544
|
|
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00058 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=66.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe--------------------------EEcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT--------------------------EHLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~--------------------------ei~G--vPVy~--sl 107 (181)
.||.|-|+ |+.|+.+.+.+.. .++++|+..|+...-+ .+.| ++++. +.
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 48999999 9999999998886 5999998777662111 0223 33333 34
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++ ++.++|+++++++.-...+.++.-+++|+|.|+.
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred cccccccccccEEEeccccceecccccccccccccceee
Confidence 4443 3458999999999999999999999999999998
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=59.61 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-----------------E---------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-----------------e---------i~G--vPVy~--sl 107 (181)
+||.|.|+ ||||+.+.+.+.+. +++++++.||...-. + +.| ++|+. ++
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 68999999 99999999998875 899999887542110 0 122 45553 45
Q ss_pred HHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++.=. ++|+++.++......+.+..++++|.+.|++
T Consensus 82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 555422 8999999999999999999999999999887
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0057 Score=55.04 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CCC---------eEEcCcccc-------ccHHHHhhcc--CC
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGG---------TEHLGLPVF-------NSVAEAKAET--KA 116 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~G---------~ei~GvPVy-------~sl~e~~~~~--~~ 116 (181)
.+.++|+|.|+||.+|+.+++.+.+.|.+|++.+.+. +.. ....++.++ ++++++.+.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 3456899999999999999999999999988754321 100 001122222 2355555533 58
Q ss_pred cEEEEeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 117 NASVIYVPP-------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 117 DVaIdfVPp-------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
|++|.+..+ .....+++.|.+.|++.+|.+++
T Consensus 138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 998876532 23456777888899997776553
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=58.71 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCe---EeeecCCCCCCeEE---cC--cccccc--HHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH---LG--LPVFNS--VAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~---IVagVdP~~~G~ei---~G--vPVy~s--l~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|+|+|+||-.|+...+.+++ .+|+ ++..-+... |+.. .| ..++.. .++ .+ ++|+++...|.+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~~~~-~~--~~Divf~a~~~~ 76 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFDIDA-LK--KLDIIITCQGGD 76 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCcceEEecCChhH-hc--CCCEEEECCCHH
Confidence 36899999999999999995555 6887 776333333 3222 22 345542 233 34 799999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 030220 127 FAAAAIMEAMEAELD 141 (181)
Q Consensus 127 ~a~~~~~eaie~GIk 141 (181)
.+.+.+.++.++|++
T Consensus 77 ~s~~~~~~~~~aG~~ 91 (369)
T PRK06598 77 YTNEVYPKLRAAGWQ 91 (369)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999987
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=55.27 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc-cccccHHHHhhccCCcEEEEeeChHHHHH-HH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNSVAEAKAETKANASVIYVPPPFAAA-AI-ME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv-PVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~-~e 134 (181)
..+|.|+|. |++|+.+.+.+...|++++ ++|+.... .|. +.+.+++++.+ ++|++++.+|-...-. .+ ++
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~~~---~~~~~~~~~l~ell~--~aDiv~~~lp~t~~T~~li~~~ 194 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSYVN---DGISSIYMEPEDIMK--KSDFVLISLPLTDETRGMINSK 194 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcc---cCcccccCCHHHHHh--hCCEEEECCCCCchhhcCcCHH
Confidence 367999999 9999999998888899988 56765321 233 34789999988 7999999999654332 22 12
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 135 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 135 aie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.++. +- ..+|+++.|=.+ |...|.++.+.-
T Consensus 195 ~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g 226 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVV-DKNDMLNFLRNH 226 (303)
T ss_pred HHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence 2222 11 346775665444 555665555443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=58.82 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=63.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--------CeEe-eec-------------CCCCCCeE-EcC------ccccccHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--------TKMV-GGV-------------TPKKGGTE-HLG------LPVFNSVAEA 110 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--------~~IV-agV-------------dP~~~G~e-i~G------vPVy~sl~e~ 110 (181)
||.|+|+ |++|++.+..+.+.| .+|. .+. +....... ..| +...++++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999999887756 4422 122 21111111 123 3355789998
Q ss_pred hhccCCcEEEEeeChHHHHHHHHHHHHcC--CCEEEEeCCCCCHH
Q 030220 111 KAETKANASVIYVPPPFAAAAIMEAMEAE--LDLVVCITEGIPQH 153 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~eaie~G--Ik~IV~iTtG~~~e 153 (181)
++ +.|++++.+|+.+..+++++.-..- -+.+|..|-|+..+
T Consensus 80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 87 8999999999999999998875441 23466669999776
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=61.28 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=74.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE-----cCc---cccccHHHHhhcc-CCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH-----LGL---PVFNSVAEAKAET-KANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei-----~Gv---PVy~sl~e~~~~~-~~DVaIdfVPp~~a 128 (181)
.+|.++|. |.||+..+.++.+.|+++.. ..++.+...-. .|. .++++++|+.+.. ++|++++++|...+
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 46999999 99999999999999999663 23333221000 143 2678999998732 49999999998866
Q ss_pred HHHH-HHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 129 AAAI-MEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 129 ~~~~-~eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.+.+ +.++..- - +.||- ++-...++..++.+.+++..+.|
T Consensus 86 V~~Vi~gl~~~l~~G~iiID-~sT~~~~~t~~~~~~l~~~Gi~f 128 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIID-GGNEWYENTERRIKEAAEKGLLY 128 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeE
Confidence 5544 5444431 1 34554 66677788888888877665543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=56.06 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=65.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-EAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~-eai 136 (181)
++|.|+|+ |++|+.+.+.+...|++|+ +.|+.... ....+....+++++.+ ++|++++.+|... ....+. +.+
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 147 MTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPNK-DLDFLTYKDSVKEAIK--DADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChhH-hhhhhhccCCHHHHHh--cCCEEEEeCCCcHHHHHHHhHHHH
Confidence 47999999 9999999999999999987 45654322 1112333458999988 8999999999664 223332 233
Q ss_pred Hc---CCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 137 EA---ELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 137 e~---GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+. |. .+|+++-|--+ |...|.++.+.-.+
T Consensus 222 ~~mk~ga-vlIN~aRG~~v-d~~aL~~aL~~g~i 253 (330)
T PRK12480 222 DHVKKGA-ILVNAARGAVI-NTPDLIAAVNDGTL 253 (330)
T ss_pred hcCCCCc-EEEEcCCcccc-CHHHHHHHHHcCCe
Confidence 22 22 46775555444 45555555544333
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00037 Score=56.19 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=63.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-----HHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-----FAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-----~a~ 129 (181)
..+|.|+|+ |+.|+.+++.+...|++|+ ++||.....+ ..++ -+.+++|+.+ ++|++++..|-. ..-
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~plt~~T~~li~ 110 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPLTPETRGLIN 110 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSSSTTTTTSBS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhccccccceeee
Confidence 467999999 9999999999999999988 6676653211 1233 4559999998 799999999942 222
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.....++.|. .+|+++-| ..-|...|.++.+.-.+
T Consensus 111 ~~~l~~mk~ga-~lvN~aRG-~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 111 AEFLAKMKPGA-VLVNVARG-ELVDEDALLDALESGKI 146 (178)
T ss_dssp HHHHHTSTTTE-EEEESSSG-GGB-HHHHHHHHHTTSE
T ss_pred eeeeeccccce-EEEeccch-hhhhhhHHHHHHhhccC
Confidence 22222333232 46775555 34444455555544443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=53.95 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=61.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeE---EcCcc-ccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~e---i~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
||.|+|. |.||+.....+.+.|+. -|.++|+.....+ -.|+. ...+.+++. ++|++|+++|+....+.+++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~~~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEILPK 77 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHHHHH
Confidence 6999998 99999999999988763 2445665432100 12432 344666653 48999999999999999988
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHH
Q 030220 135 AMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~ 157 (181)
.....-..+|. ..|-...++.+
T Consensus 78 l~~l~~~~iv~-d~gs~k~~i~~ 99 (275)
T PRK08507 78 LLDIKENTTII-DLGSTKAKIIE 99 (275)
T ss_pred HhccCCCCEEE-ECccchHHHHH
Confidence 76522122443 45555555444
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0099 Score=54.09 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=65.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.+|.|+|.+|.||+...+.+.+. +.+|. ++|+...+ ..+.++..+ ++|++|+++|.....+.+++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d~~--------~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPADPG--------SLDPATLLQ--RADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCccc--------cCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHh
Confidence 467999999999999999999874 77776 68875321 235667776 7999999999999999999988
Q ss_pred Hc----CCCEEEEeCCCCCHHHHHHH
Q 030220 137 EA----ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 137 e~----GIk~IV~iTtG~~~ed~~~l 158 (181)
.. .-..+|.=...+...=+..+
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~ 98 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAM 98 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHH
Confidence 75 22234332355554333444
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=56.12 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.||.|+|+||--|+...+.+.+. .+++++...... ..+ .+.++..+ ++|+++.++|...+.+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 478999999999999999998885 788886643322 111 22233334 7999999999999999999999
Q ss_pred HcCCCEE
Q 030220 137 EAELDLV 143 (181)
Q Consensus 137 e~GIk~I 143 (181)
+.|++.|
T Consensus 72 ~~g~~VI 78 (313)
T PRK11863 72 NPATRVI 78 (313)
T ss_pred hCCCEEE
Confidence 9999754
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0015 Score=56.23 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=58.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee----------ChH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV----------PPP-- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV----------Pp~-- 126 (181)
|||+|.|++|-+|+.+.+.+.+.|.++++. +... .++.-.+.+.+.+++.+||++|.+. .|+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT-SRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE-STTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 689999999999999999999988888855 4432 1233334678888877899999985 333
Q ss_pred ------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 ------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ------~a~~~~~eaie~GIk~IV~iT 147 (181)
.+...++.|.+.|++.|..-|
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 334567888899999998744
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0023 Score=59.67 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=68.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCCe---E-Ec--CccccccHHHHhhcc-CCcEEEEeeCh-HHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGT---E-HL--GLPVFNSVAEAKAET-KANASVIYVPP-PFAA 129 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G~---e-i~--GvPVy~sl~e~~~~~-~~DVaIdfVPp-~~a~ 129 (181)
.|.++|. |+||+..+..+.+.|++|+. .|+. +... + .. ++..+++++++.+.. ++|++++++|+ +.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~v-~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVSV-YNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEEE-EeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 3789999 99999999999999998663 3433 2110 1 11 366788888887542 68999999999 6777
Q ss_pred HHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++.+...- =+.||-.++..+.+......+ .++..+
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi 117 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGI 117 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCC
Confidence 7777665541 145666455555554444444 444333
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0039 Score=53.93 Aligned_cols=85 Identities=21% Similarity=0.138 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccc------cHHHHhhccCCcEEEEeeChHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN------SVAEAKAETKANASVIYVPPPFA- 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~------sl~e~~~~~~~DVaIdfVPp~~a- 128 (181)
++|+|.|+||- |+.+++.+.+.|.++++-+.-...... ..+.||.. ++.+++.++++|++||.++|-+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~ 79 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ 79 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence 47999999996 999999999889998875432221111 22345553 57777887899999999999763
Q ss_pred --HHHHHHHHHcCCCEEE
Q 030220 129 --AAAIMEAMEAELDLVV 144 (181)
Q Consensus 129 --~~~~~eaie~GIk~IV 144 (181)
+.+.+-|-+.||+-+=
T Consensus 80 is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHhCCcEEE
Confidence 5667777788998764
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0042 Score=55.44 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=59.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.||.|+|++|-.|.+..+.+.+. +++++....... . ..+ +.+++.+ ++|+++.++|...+.+.+..+.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~---~~~-~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K---DAA-ERAKLLN--AADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c---CcC-CHhHhhc--CCCEEEECCCHHHHHHHHHHHHh
Confidence 57999999999999999999985 899887644322 1 111 3445555 79999999999999999999999
Q ss_pred cCCCEE
Q 030220 138 AELDLV 143 (181)
Q Consensus 138 ~GIk~I 143 (181)
+|++.|
T Consensus 72 ~g~~VI 77 (310)
T TIGR01851 72 PNTCII 77 (310)
T ss_pred CCCEEE
Confidence 998754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0029 Score=58.94 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E------------------EcC-ccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E------------------HLG-LPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e------------------i~G-vPVy~sl~e~~~~~~~ 116 (181)
+||.|+|+ |.||..+...+...|++|.. ..+|.+... + ..| +.+.++++++.+ ++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~a 81 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--GA 81 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--CC
Confidence 47999999 99999999999999998652 333332110 0 012 556678888877 89
Q ss_pred cEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 117 NASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 117 DVaIdfVPp~~a-~~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
|+++..+|+... .+.+..-++...+ .|..-|.|++..++.+
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~ 126 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 999999999863 3322222333222 4666689999876654
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0046 Score=56.41 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=63.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-----HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-----a~~~~ 132 (181)
..+|.|+|+ |++|+.+++.+...|++++ +.||.... ..+..-|.+++|+.+ ++|++++.+|-.. ....+
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~~~--~~~~~~~~~l~ell~--~aDiV~lh~Plt~~g~~~T~~li 189 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPRQE--AEGDGDFVSLERILE--ECDVISLHTPLTKEGEHPTRHLL 189 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcccc--cccCccccCHHHHHh--hCCEEEEeCcCCCCccccccccC
Confidence 367999999 9999999999999999987 56775422 122223568999988 7999999999632 23333
Q ss_pred HH-HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 133 ME-AMEA-EL-DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 133 ~e-aie~-GI-k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
.+ .++. +- ..+|+.+-|=-+ |...|.++.+
T Consensus 190 ~~~~l~~mk~gailIN~aRG~vV-de~AL~~aL~ 222 (381)
T PRK00257 190 DEAFLASLRPGAWLINASRGAVV-DNQALREALL 222 (381)
T ss_pred CHHHHhcCCCCeEEEECCCCccc-CHHHHHHHHH
Confidence 22 2222 11 246664555444 4444544443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0052 Score=56.15 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-cHHHHhhc-------------cCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-SVAEAKAE-------------TKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-sl~e~~~~-------------~~~DVaId 121 (181)
++||.|+|. |.||......+.+.|+++++ ..|+.+... ....+|++. .+++++++ .++|++++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 368999999 99999999999999999774 344443221 113466665 45555321 16899999
Q ss_pred eeCh----------HHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHH
Q 030220 122 YVPP----------PFAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 122 fVPp----------~~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~~~ 161 (181)
++|. ..+.++++....+-- ..+|+..+-++..-..++.+.
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~ 132 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEW 132 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHH
Confidence 9998 577777766655422 224444555665555555443
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0072 Score=53.36 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=78.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEe-eecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IV-agVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.++|. |.||+-..+.+.+.|+++. ...+|.+.-+. -.|..++.+..|+.+ +.|++|.++|.......+...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g 77 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG 77 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence 47999999 9999999999999999954 45666662211 248899999999888 899999999988777766643
Q ss_pred ----HHc-CCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 136 ----MEA-ELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 136 ----ie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
++. .-..+|+--+=++.++..++.+.+++-.+-
T Consensus 78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115 (286)
T ss_pred ccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence 221 112244445668889999999888776443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0034 Score=53.70 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-------------EE------------cCccccccHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-------------EH------------LGLPVFNSVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-------------ei------------~GvPVy~sl~e~~~ 112 (181)
.||+|+|+ |.||..+...+...|.+++. .++|..... +. .++.+.++.++ .+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 57999999 99999999999888988663 333332100 00 13344556654 34
Q ss_pred ccCCcEEEEeeChHHH--HHHHHHHHHc-CCCE-EEEeCCCCCHHHHHHHH
Q 030220 113 ETKANASVIYVPPPFA--AAAIMEAMEA-ELDL-VVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a--~~~~~eaie~-GIk~-IV~iTtG~~~ed~~~l~ 159 (181)
++|++|.++|++.. +++..++... .-.. ++..|.|++..++.+..
T Consensus 82 --~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 82 --DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT 130 (282)
T ss_pred --cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence 79999999997555 5666664433 1122 33558899888766543
|
|
| >PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0036 Score=48.22 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=54.3
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCC--CCeEEcCcccccc---HHHHhhccCCcEEEEeeCh---H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNS---VAEAKAETKANASVIYVPP---P 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~--~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp---~ 126 (181)
..+..++|. |..|....+.+.+ .|++++|-+|+.. .+.++.|+|+..+ +.+..+++++|-+++..|. +
T Consensus 77 ~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~ 155 (175)
T PF13727_consen 77 GRNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEE 155 (175)
T ss_dssp -EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HH
T ss_pred ccceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHH
Confidence 344567775 6678888888777 4899999877544 3456789999974 6666777899999999765 4
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030220 127 FAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV 144 (181)
...+.+++|-+.|++.-+
T Consensus 156 ~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 156 QIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 566778888888887644
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=57.10 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=32.3
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
..-.+...|+|+|+||+.|+.+++.+++.||.+-++|-
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VR 111 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVR 111 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeecc
Confidence 33445577999999999999999999999999888754
|
|
| >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0039 Score=57.06 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeChHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPPPFAA-- 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~~a~-- 129 (181)
..|++|+|+ |..|....+.+.+ .|+++||-++.......+.|+||+.+ +.++.+++++|-+++..|...-.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~ 202 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLP 202 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchH
Confidence 367999999 9999877444433 38999998843222225789999985 55567778999999999865543
Q ss_pred -HHHHHHHHcCCCEEEE
Q 030220 130 -AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 -~~~~eaie~GIk~IV~ 145 (181)
+.+++|-+.|++..+.
T Consensus 203 ~~~l~~~~~~gv~V~iv 219 (442)
T TIGR03013 203 VDELLECKLSGIEVVDA 219 (442)
T ss_pred HHHHHHHHhCCCEEEEc
Confidence 3567777788877654
|
Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre |
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0061 Score=56.49 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeCh---HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPP---PFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp---~~a~ 129 (181)
.+|+|+|+ |..|+..++.+.+ .|+++||-+|....+ -.++|++.+ +.++.+++++|-+++..|. +...
T Consensus 144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~--g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG--GVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc--cCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 57999999 9999999888876 389999988854322 124566876 4455677899999999884 4456
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+.+++|.+.|++..+.
T Consensus 221 ell~~~~~~~v~V~iv 236 (463)
T PRK10124 221 KLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHcCCeEEEe
Confidence 7788888889987655
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.005 Score=52.24 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCeEE--cCcc-----------ccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGTEH--LGLP-----------VFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~ei--~GvP-----------Vy~sl~e~~~~~~~DVaIdfV 123 (181)
+||+|+|+ |.||......+.+.|.++.. +++ .... .+ .|+. ..++.+++ + ++|++++++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~-~~r~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVTL-VARRGAHLD-ALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EECChHHHH-HHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEec
Confidence 47999999 99999999998888877653 332 2100 00 1332 23455554 3 799999999
Q ss_pred ChHHHHHHHHHHHHc-CC-CEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-EL-DLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-GI-k~IV~iTtG~~~ed 154 (181)
++....++++.+... +- ..||.+.-|+..++
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999998888877653 22 25666788997544
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0039 Score=56.24 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=67.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCC-------------CC------------eEE--cCccccccHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK-------------GG------------TEH--LGLPVFNSVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~-------------~G------------~ei--~GvPVy~sl~ 108 (181)
+.||.|-|+ |+.|+.+++.+.+. ++++||..|... .| ..+ .+++|+.+.+
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 368999999 99999999999885 599998655211 00 011 2688988644
Q ss_pred -HHhh--ccCCcEEEEeeChHHHHHHHHHHHHc-CCCEEEEeCCC
Q 030220 109 -EAKA--ETKANASVIYVPPPFAAAAIMEAMEA-ELDLVVCITEG 149 (181)
Q Consensus 109 -e~~~--~~~~DVaIdfVPp~~a~~~~~eaie~-GIk~IV~iTtG 149 (181)
+.+. +..+|++|+++|--...+.++.-+++ |+|.|+.-.++
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 4332 34689999999999999999988888 59999983433
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.004 Score=53.54 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E-----------------------EcCccccccHHHHh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E-----------------------HLGLPVFNSVAEAK 111 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e-----------------------i~GvPVy~sl~e~~ 111 (181)
++|.|+|+ |.||..++..+.+.|.++.. .+++..... . ...+.+..+++++.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999 99999999988888888652 343321000 0 02344567888877
Q ss_pred hccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEEE-EeCCCCCHHHHHHH
Q 030220 112 AETKANASVIYVPPP--FAAAAIMEAMEA-ELDLVV-CITEGIPQHDMVIN 158 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~--~a~~~~~eaie~-GIk~IV-~iTtG~~~ed~~~l 158 (181)
+ ++|++|.++|.+ ..+++..++.+. .-+.|+ .-|+.++..++.+.
T Consensus 83 ~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~ 131 (287)
T PRK08293 83 K--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEA 131 (287)
T ss_pred c--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhh
Confidence 7 899999999954 556666554443 112233 34778877765553
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0023 Score=55.04 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=62.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E-----------------------EcCccccccHHHHhh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E-----------------------HLGLPVFNSVAEAKA 112 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e-----------------------i~GvPVy~sl~e~~~ 112 (181)
.+|.|+|+ |.||..+...+.+.|++++. ..|+..... + ...+....++++..+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 47999999 99999999999888998663 344332110 0 012345567877777
Q ss_pred ccCCcEEEEeeChHHHH--HHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030220 113 ETKANASVIYVPPPFAA--AAIMEAMEAELD---LVVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a~--~~~~eaie~GIk---~IV~iTtG~~~ed~~~l~ 159 (181)
++|+++.++|.+... .+..++.+ .++ .++.-|+.++..++.+..
T Consensus 81 --~aD~Vi~avpe~~~~k~~~~~~l~~-~~~~~~il~~~tSt~~~~~l~~~~ 129 (288)
T PRK09260 81 --DADLVIEAVPEKLELKKAVFETADA-HAPAECYIATNTSTMSPTEIASFT 129 (288)
T ss_pred --CCCEEEEeccCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHhhc
Confidence 899999999988642 33333332 222 232337888888765443
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0083 Score=57.91 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=69.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeE---EcCcc--ccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGLP--VFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~e---i~GvP--Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.+|.|+|+ |+||....+.+.+.|+ +|+ ++|+.....+ -.|+. ...+++++++ ++|++++.+|++...++
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHHH
Confidence 67999998 9999999999998884 444 5665542110 12432 3446777776 79999999999999999
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++++... .-..+|....+++..-...+.+..
T Consensus 80 l~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 8887653 223355447788866666666554
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.007 Score=55.24 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-----HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-----AAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-----a~~~~ 132 (181)
..+|.|+|+ |++|+.+++.+...|++++ +.||...... .+ -.|.+++++++ ++|++++.+|-.. ....+
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~~~~~-~~-~~~~~L~ell~--~sDiI~lh~PLt~~g~~~T~~li 189 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPRADRG-DE-GDFRSLDELVQ--EADILTFHTPLFKDGPYKTLHLA 189 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcccccc-cc-cccCCHHHHHh--hCCEEEEeCCCCCCccccccccc
Confidence 467999999 9999999999999999988 5687543211 11 24679999998 7999999998433 33333
Q ss_pred HHH-HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 MEA-MEA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 ~ea-ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+. +++ +- ..+|+ |.-=+.-|...|.++.++
T Consensus 190 ~~~~l~~mk~gailIN-~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 190 DEKLIRSLKPGAILIN-ACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CHHHHhcCCCCcEEEE-CCCchhcCHHHHHHHHHh
Confidence 222 222 22 24566 444444455555555443
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0032 Score=56.71 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=65.4
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe------------------EE----------cC--cccc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT------------------EH----------LG--LPVF 104 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~------------------ei----------~G--vPVy 104 (181)
++..||.|.|+ |++|+.+.+.+.+ .+.++|+..||...-. ++ .| ++|+
T Consensus 3 ~~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 3 DKKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CCceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 34579999999 9999999998776 4899998776543211 00 11 2333
Q ss_pred c--cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 105 N--SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 105 ~--sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
. +.++++ ++.++|+++.++......+.+...+++|.+.|++ +
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii-S 126 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI-S 126 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe-C
Confidence 2 123332 2248999999999999999999999999988877 5
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=48.14 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe---EEcCccccc-c----HHHHhhc--cCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EHLGLPVFN-S----VAEAKAE--TKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~---ei~GvPVy~-s----l~e~~~~--~~~DVaIdfVPp~ 126 (181)
+++|+|.|++|..|+.+++.+.+.|.+|++.+. +..... +..++.++. + .+++.+. .++|+++.+.+..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 578999999999999999999998999886532 221100 001122221 1 2223222 2689999876532
Q ss_pred --------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 --------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 --------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.+.+.|++.+|.+++
T Consensus 97 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 97 RSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred cCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3566777777889888877665
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=49.94 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-------CCCeEEc--------CccccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-------KGGTEHL--------GLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-------~~G~ei~--------GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+||+|+|+ |.+|......+.+.|.++.. +++. ..|-.+. ..++.++.++..+ .+|++++++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~~-~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVTF-LVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceEE-EecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEe
Confidence 47999999 99999999988887777553 3321 1111110 1123345555544 799999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed 154 (181)
|+....++++++... + =..|+.+.-|+..++
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 999999888877653 1 134655678987443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.013 Score=51.79 Aligned_cols=99 Identities=8% Similarity=0.078 Sum_probs=63.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcc---ccccHHHHhhccCCcEEEEeeChHHH-HHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNSVAEAKAETKANASVIYVPPPFA-AAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvP---Vy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~ 133 (181)
..+|.|+|. |++|+.+.+.+...|+++. ++|+.... ..++. -+.+++++++ ++|++++.+|-... ...+.
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~~~--~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSRKS--WPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCC--CCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHhH
Confidence 367999999 9999999999999999987 46654321 11211 1357899988 89999999995544 33322
Q ss_pred H-HH---HcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 E-AM---EAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 e-ai---e~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+ .+ +.| ..+|+++-|--+ |...|.++.+.
T Consensus 210 ~~~l~~mk~g-a~lIN~aRG~vV-de~aL~~aL~~ 242 (312)
T PRK15469 210 QQLLEQLPDG-AYLLNLARGVHV-VEDDLLAALDS 242 (312)
T ss_pred HHHHhcCCCC-cEEEECCCcccc-CHHHHHHHHhc
Confidence 2 22 223 257776655544 44444444433
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0045 Score=53.89 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCcc-----------------ccccHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLP-----------------VFNSVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvP-----------------Vy~sl~e~~~~~~~DVa 119 (181)
+||.|+|+ |.||......+.+.|.++.. +++...-+.+ .|+. +..+. +..+ ++|++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~~-~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~D~v 77 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVTL-IGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TADLV 77 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEEE-EecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc--CCCEE
Confidence 67999999 99999999999988888664 4432110000 1221 22344 3333 79999
Q ss_pred EEeeChHHHHHHHHHHHHcCC--CEEEEeCCCCCHH
Q 030220 120 VIYVPPPFAAAAIMEAMEAEL--DLVVCITEGIPQH 153 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GI--k~IV~iTtG~~~e 153 (181)
++++++....++++.+...-- ..|+.++.|+...
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 999999999988877665411 2356568898754
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=48.51 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=29.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
+.+|+|+|+ |-.|..+.+.+...|..-+..+|+...
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 467999999 669999999999999885556776654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0038 Score=46.86 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=52.6
Q ss_pred eEEEEccCCCCcchhhHHHHH-hCCeEeeecC-CCCCCeEE---c-Ccc--ccccH--HHHhhccCCcEEEEeeChHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKKGGTEH---L-GLP--VFNSV--AEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~-~g~~IVagVd-P~~~G~ei---~-GvP--Vy~sl--~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
|+.++|++|.+|+.+.+.+.+ .++++++.++ +...++.. . .+. ++..+ +++. ..++|++++++|++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE-ELAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh-hcCCCEEEEcCCcHHHH
Confidence 589999999999999999988 4999887644 32223221 1 121 12222 2221 23789999999999999
Q ss_pred HHHHHH---HHcCCC
Q 030220 130 AAIMEA---MEAELD 141 (181)
Q Consensus 130 ~~~~ea---ie~GIk 141 (181)
+.+..+ ++.|..
T Consensus 80 ~~~~~~~~~~~~g~~ 94 (122)
T smart00859 80 EIAPLLPKAAEAGVK 94 (122)
T ss_pred HHHHHHHhhhcCCCE
Confidence 976543 345643
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0054 Score=57.76 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=68.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~e 134 (181)
.+|.|+|. |++|+.+++.+...|++++ ++||..... .-.|++..++++|+.+ ++|++++.+|... ...++ ++
T Consensus 139 ktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 139 KTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcCHH
Confidence 56999999 9999999999999999987 567643211 1235665678999988 8999999999653 33333 12
Q ss_pred HHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 135 AMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 135 aie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.++. +-. .+|+.+.| ..-|...|.++.+.-.++
T Consensus 215 ~l~~mk~ga~lIN~aRG-~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARG-GIIDEAALYEALEEGHVR 249 (525)
T ss_pred HHhcCCCCeEEEEcCCC-ceeCHHHHHHHHHcCCee
Confidence 2322 222 35664555 444556666666554443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0053 Score=55.32 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-----------------E---------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-----------------e---------i~G--vPVy~--sl 107 (181)
.||.|-|+ |+.|+.+.+.+.+. ++++|+..||...-. + ++| +++|. +.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 48999999 99999999987764 899998766432110 0 123 56665 57
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++ ++.++|+++.++......+-+..++++|.+.|++ |.
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 7775 3458999999999999999999999999999988 53
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0074 Score=51.91 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=60.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--E-E------------cC-------------ccccccHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--E-H------------LG-------------LPVFNSVAE 109 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--e-i------------~G-------------vPVy~sl~e 109 (181)
.+|.|+|+ |.||..+...+...|++|+. .+++..... + + .| +...+++ +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 57999999 99999999999888998663 333332110 0 0 01 1122344 3
Q ss_pred HhhccCCcEEEEeeChHH--HHHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHH
Q 030220 110 AKAETKANASVIYVPPPF--AAAAIMEAMEAELD---LVVCITEGIPQHDMVINF 159 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~~--a~~~~~eaie~GIk---~IV~iTtG~~~ed~~~l~ 159 (181)
..+ ++|++|.++|++. -+++..+ ++.-++ .++..|.|++..++.+..
T Consensus 82 ~~~--~aDlVieav~e~~~~k~~~~~~-l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 82 SLS--DADFIVEAVPEKLDLKRKVFAE-LERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred HhC--CCCEEEEcCcCcHHHHHHHHHH-HHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 344 7999999999886 3444444 433232 345557899888776543
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=53.43 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCCCCeEEcCccccc-----------------cHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKKGGTEHLGLPVFN-----------------SVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~~G~ei~GvPVy~-----------------sl~e~ 110 (181)
..+|+++|+ |..|+.+++.+.+ +| ++|++..|....--.-.|++.-. +..+.
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 368999999 9999977776543 23 45666555322110001222111 12222
Q ss_pred h-hccCCcEEEEeeCh-----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 111 K-AETKANASVIYVPP-----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 111 ~-~~~~~DVaIdfVPp-----~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
. +..++||+|+++|. +.+++.+..|+++|++.|-. --+.-..+..+|.++|++-
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTA-NK~~la~~~~eL~~lA~~~ 140 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAI-SKGALVTNWREINEAAKIA 140 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcC-CcHHHhccHHHHHHHHHHc
Confidence 2 22258999999986 57889999999999998854 2222233446666666553
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=51.41 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=59.5
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--Ce-----EE--cCccccccHHHHhhccCCcEEEEee
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GT-----EH--LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--G~-----ei--~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
-+.++.+||+|.|++|..|+.+++.+.+.|.+|++....... .. ++ .++.-..++.++++ ++|++|.+.
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~A 93 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLA 93 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEEcc
Confidence 355677899999999999999999999999998864221110 00 00 11111112334444 789988886
Q ss_pred Ch-------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 124 PP-------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 124 Pp-------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.. .....+++.|.++|++.+|.+++
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 21 12345667777889988876554
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0051 Score=54.18 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|. |+.|+.+.+.+..+|++|+ ++||.... +..+++ |.+++|+++ ++|++++.+|-.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~~-~~~~~~-~~~l~ell~--~sDvv~lh~Plt 207 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGKN-KNEEYE-RVSLEELLK--TSDIISIHAPLN 207 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCccc-cccCce-eecHHHHhh--cCCEEEEeCCCC
Confidence 356999999 9999999999998999988 56775322 123443 558999998 799999999954
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.008 Score=50.67 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----C----------eEEcCccccc-----cHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----G----------TEHLGLPVFN-----SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----G----------~ei~GvPVy~-----sl~e~~~~~~~DV 118 (181)
..+|+|+|+ |+.|+...+.+.+.|.++|+..|.+.. | .+..++..|+ +-+++.. .++|+
T Consensus 23 g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~DV 100 (217)
T cd05211 23 GLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVDI 100 (217)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccccE
Confidence 478999999 999999999999999999987664320 1 0112333332 2233433 48899
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.+-+.+.. .-..+.+.+.+++.|+. ...
T Consensus 101 lipaA~~~--~i~~~~a~~l~a~~V~e-~AN 128 (217)
T cd05211 101 FAPCALGN--VIDLENAKKLKAKVVAE-GAN 128 (217)
T ss_pred EeeccccC--ccChhhHhhcCccEEEe-CCC
Confidence 99988766 33555666778999998 544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=48.07 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=28.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |.+|+.+++.+...|+.-+-.+|+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 467999999 99999999999999986444666653
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=53.46 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=66.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEA- 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~ea- 135 (181)
..+|.|+|. |+.|+.+++.+...|++++ +.||.... ...++.-..+++|+++ ++|++++.+|-.. ....+.+.
T Consensus 151 gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li~~~~ 225 (409)
T PRK11790 151 GKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDKL-PLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMIGAEE 225 (409)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCccc-ccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhccCHHH
Confidence 356999999 9999999999999999988 56765321 1223333458999998 7999999999643 33333222
Q ss_pred HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 136 MEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 136 ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++. +- ..+|+++-|--+ |...|.++.+.-.+
T Consensus 226 l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 258 (409)
T PRK11790 226 LALMKPGAILINASRGTVV-DIDALADALKSGHL 258 (409)
T ss_pred HhcCCCCeEEEECCCCccc-CHHHHHHHHHcCCc
Confidence 222 21 236775555444 55555555544434
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=53.30 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=63.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe--Eeee-cCCCCCCeE---EcC--ccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGG-VTPKKGGTE---HLG--LPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~--IVag-VdP~~~G~e---i~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
++||.|+|+||-.|+...+.+.+++|. .+.. -.+...|++ ..| +++-.+..+.....++|+++-+.+.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 368999999999999999999996544 2332 233334443 222 45555544444334799999999999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+...++.++|...|=+
T Consensus 81 ~~~p~~~~~G~~VIdn 96 (334)
T COG0136 81 EVEPKAAEAGCVVIDN 96 (334)
T ss_pred HHHHHHHHcCCEEEeC
Confidence 9999999999665543
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=51.91 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=47.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
.+|.|+|+ |+.|+.+.+.+...|++|++ +|+.... +. ..+ |.+++|++. ++|++++.+|-
T Consensus 148 ktvgIiG~-G~IG~~va~~l~~fg~~V~~-~~~~~~~-~~-~~~-~~~l~ell~--~sDiv~l~~Pl 207 (314)
T PRK06932 148 STLGVFGK-GCLGTEVGRLAQALGMKVLY-AEHKGAS-VC-REG-YTPFEEVLK--QADIVTLHCPL 207 (314)
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEE-ECCCccc-cc-ccc-cCCHHHHHH--hCCEEEEcCCC
Confidence 57999999 99999999999889999884 6764321 11 112 668999998 79999999993
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0057 Score=53.64 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccc--cccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+..+|+|+|+ |.||+.+.+.+...|..-|..+|+.... .++ .|..+ ++++.+.+. ++|++|.++|.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence 4578999999 9999999999888776544455654321 111 12222 235666665 7999999999887766
Q ss_pred HHHHHHHcC---CCEEEEeC------------CCCCHHHHHHHHHHhh
Q 030220 131 AIMEAMEAE---LDLVVCIT------------EGIPQHDMVINFTRVN 163 (181)
Q Consensus 131 ~~~eaie~G---Ik~IV~iT------------tG~~~ed~~~l~~~ak 163 (181)
....+++.. -+.++-++ +|+..-|+..|++.++
T Consensus 254 ~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 666665442 23454444 2454555566665554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0056 Score=54.63 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=67.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC--eEEcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIM-- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G--~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~-- 133 (181)
++|.|+|+ |+.|+.+.+.+...|++++ +.||.... ....++--.++++++++ +.|++++.+|-.-- ..++.
T Consensus 143 kTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 143 KTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhcccCHH
Confidence 46999999 9999999999999999998 67773322 12344555578999999 89999999986432 22222
Q ss_pred --HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
..++.|. .+||.+=| +.=|...|.++.+.--
T Consensus 219 ~~a~MK~ga-ilIN~aRG-~vVde~aL~~AL~~G~ 251 (324)
T COG0111 219 ELAKMKPGA-ILINAARG-GVVDEDALLAALDSGK 251 (324)
T ss_pred HHhhCCCCe-EEEECCCc-ceecHHHHHHHHHcCC
Confidence 2223344 56774433 4444445555554433
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=53.48 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=65.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCC-----------------------CCeE--EcC--ccccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKK-----------------------GGTE--HLG--LPVFN- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~-----------------------~G~e--i~G--vPVy~- 105 (181)
+.||+|.|+ |+.|+.+.+.+.+. ++++++..|+.. .|+. +.| +.|+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 358999999 99999999988873 577885432111 1111 233 56664
Q ss_pred -cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 -sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++++ .+.++|+++.++......+.+..++++|.+.|++ +
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-S 122 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-S 122 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-c
Confidence 456554 2358999999999999999999999999999988 5
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.012 Score=50.65 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=57.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---EE---------cC-------------ccccccHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---EH---------LG-------------LPVFNSVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---ei---------~G-------------vPVy~sl~e~~ 111 (181)
.+||.|+|+ |.||..+...+...|++++. ..++..... .+ .| +.+-+++++ .
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 81 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L 81 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence 467999999 99999999999988998663 333322110 00 01 233456654 4
Q ss_pred hccCCcEEEEeeChH-HHH-HHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 112 AETKANASVIYVPPP-FAA-AAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~-~a~-~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
+ ++|++|.++|.+ .+. .+..+ ++..++ .++.-|.+++..++.+
T Consensus 82 ~--~aD~Vieavpe~~~~k~~~~~~-l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 82 A--DCDLVIEAATEDETVKRKIFAQ-LCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred c--CCCEEEEcCcCCHHHHHHHHHH-HHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 4 799999999875 223 33333 333222 2333488898765433
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.016 Score=60.50 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=70.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~~ 133 (181)
.++|.++|. |+||....+.+...|+++. +.|+.... ... .|....++.+++.+ ++|++++++| ++.+.+++.
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~ 399 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLF 399 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHh
Confidence 478999999 9999999999999999865 34433211 111 25556778888887 7999999999 777777762
Q ss_pred ---HHHHcCC--CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 ---EAMEAEL--DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 ---eaie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+++.-- +.+|. .+-++.....++.+.+++
T Consensus 400 g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 400 GDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred chhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence 2333311 34555 555667777777777665
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=48.62 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH-------------
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP------------- 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~------------- 126 (181)
||+|.|++|..|+.+++.+.+.|.++++. +... .++.-..++.++++..++|++|.+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~-~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVAL-TSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEe-CCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 58999999999999999999989988754 3321 1233334677777766789999876431
Q ss_pred -----HHHHHHHHHHHcCCCEEEE
Q 030220 127 -----FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 -----~a~~~~~eaie~GIk~IV~ 145 (181)
....+++.|.+.|.+.|..
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~v~~ 98 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARLVHI 98 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1444555666778765544
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=51.63 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEe----------------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY---------------- 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdf---------------- 122 (181)
++|+|.|++|.+|+...+.+. .++++++. ++.. .++.-.+.+.+++++.+||++|-+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~-~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A 73 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIAT-DRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELA 73 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEec-cCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHH
Confidence 359999999999999999887 56777743 3322 345666789999988899999976
Q ss_pred --eChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 --VPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 --VPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++...+..+++.|-+.|.+.|-+-|
T Consensus 74 ~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 74 FAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred HHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 4556677889999999999997733
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.036 Score=48.58 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=70.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeE-eeecCCCCCCeEE---cCcc-cc-ccH-HHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTEH---LGLP-VF-NSV-AEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~I-VagVdP~~~G~ei---~GvP-Vy-~sl-~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..+|+|+|. |-||+...+.+.+.|..+ +.+.|+.....+. .|+. -+ .+. .+... +.|++|+.||.....+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 467999997 999999999999998886 6688876532110 2221 11 122 33333 6899999999999999
Q ss_pred HHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 131 AIMEAME-AELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 131 ~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++++... .....+|.=.+.+...-+..+.+..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 9999985 3444455445666666666666655
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.027 Score=49.84 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E---------------c---Cccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H---------------L---GLPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i---------------~---GvPVy~-- 105 (181)
+.+|+|+|+ |-+|..+++.+...|..-+..+|....... + + .+.+|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 999999999999988775555555433210 0 0 122222
Q ss_pred ----cHHHHhhccCCcEEEEeeCh---HHHHHHHHHHHHcCCCEEEE
Q 030220 106 ----SVAEAKAETKANASVIYVPP---PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp---~~a~~~~~eaie~GIk~IV~ 145 (181)
+.+++++ ++|++||.+.. +.-+.+-+.|.++|++.|.+
T Consensus 106 l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 106 IGKENADAFLD--GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred cCccCHHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 2445555 67777777754 45566666777777777665
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.033 Score=46.56 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC----eEEc---Ccccc-------ccHHHHhhccCCcEEEEeeCh
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----TEHL---GLPVF-------NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G----~ei~---GvPVy-------~sl~e~~~~~~~DVaIdfVPp 125 (181)
||+|.|++|..|+.+++.+.+.|.++++.-.+.... .++. ++..+ .+++++++..++|++|.+...
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 589999999999999999999899877431111100 0000 12221 235555554579999877632
Q ss_pred ------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
..+..+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 12455667777888887776553
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.012 Score=55.49 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
.++|.|+|+ |++|+.+.+.+...|++++ ++||..... .-.|+... +++|+.+ ++|++++.+|... ...++ .
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCcCH
Confidence 366999999 9999999999999999987 567643211 12355444 8999988 7999999999753 33333 2
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +- ..+|+++-|=-+ |...|.++.+.-.+
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 249 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGII-DEAALAEALKSGKV 249 (526)
T ss_pred HHHhcCCCCeEEEECCCCcee-CHHHHHHHHhcCCe
Confidence 22222 21 235665555444 55555555544433
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.038 Score=46.52 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEc--Ccccc-------ccHHHHhhccCCcEEEEeeCh----
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHL--GLPVF-------NSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~--GvPVy-------~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
+|+|.|++|-+|+.+++.+.+.|.++++... +... ..+. ++.++ .+++++++ ++|+++.+...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~ 78 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-RNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLW 78 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-cccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccC
Confidence 6999999999999999999998998775432 2221 1111 22222 23555555 68988876532
Q ss_pred ------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.+.+.+++.+|.+++
T Consensus 79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 12345667777889888776554
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.028 Score=50.30 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
..+|+|+|+ |.+|..+++.+...|..-+..||+..
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 367999999 99999999999999986555677654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.037 Score=45.71 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------E----------------cCc--ccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------H----------------LGL--PVF- 104 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------i----------------~Gv--PVy- 104 (181)
+.+|+|+|+ |-.|..+.+.+...|..-+..+|....... + ..+ ..+
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 669999999999998884445554332100 0 011 111
Q ss_pred -------ccHHHHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 105 -------NSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 105 -------~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
++.++..+ ++|++|++..+ +.....-+.|.++++|.|.+-+.|+
T Consensus 98 ~~~~~~~~~~~~~~~--~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 98 EDSLSNDSNIEEYLQ--KFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred cccccchhhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 12233344 67887777643 3445566777777888877766666
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.015 Score=53.55 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH-HH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-IM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~-~~ 133 (181)
...+|+|+|+ |+.|+.+++.+...|.+++. .+||.+.-. ...|..+. +++++++ +.|++|.++....+.+. ..
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence 4568999999 99999999999999999554 467754211 12355444 4577776 78999999876655443 22
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHhhh
Q 030220 134 EAMEAELDLVVCITEGIPQ-HDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~-ed~~~l~~~ak~ 164 (181)
.+++.| .+++.+.+++. =|...|.+++..
T Consensus 270 ~~mK~G--ailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 270 ENMKDG--AIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred hcCCCC--cEEEEECCCCceeCHHHHHHHHhh
Confidence 232333 24444666665 577777776543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=53.03 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=56.7
Q ss_pred ceEEEEccCCCCcchhhHHHH-HhCCe---EeeecCCCCCCeEE--cC--ccccccHH-HHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTPKKGGTEH--LG--LPVFNSVA-EAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~~g~~---IVagVdP~~~G~ei--~G--vPVy~sl~-e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||+|+|+||-.|+...+.+. +.+|. ++..-+.+..|+.+ .| +.|.+--+ +..+ ++|+++.+.+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~--~vDivffa~g~~~s~ 78 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALK--ALDIIITCQGGDYTN 78 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCccccccc--CCCEEEEcCCHHHHH
Confidence 379999999999999999888 56776 33222333333221 12 23332112 1233 799999999999999
Q ss_pred HHHHHHHHcCCCE
Q 030220 130 AAIMEAMEAELDL 142 (181)
Q Consensus 130 ~~~~eaie~GIk~ 142 (181)
+....+.++|.+.
T Consensus 79 ~~~p~~~~aG~~~ 91 (366)
T TIGR01745 79 EIYPKLRESGWQG 91 (366)
T ss_pred HHHHHHHhCCCCe
Confidence 9999999999764
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.013 Score=52.83 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCe----------------E---------EcC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~----------------e---------i~G--vPVy~-- 105 (181)
+.||.|-|+ |+.|+.+.+.+.+. +++||+..|+..... + +.| ++|+.
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 468999999 99999999986653 689998655422110 0 123 45555
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.++++ .+.++|+++.++......+-+...+++|.+.|++ +
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i-S 121 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI-T 121 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe-C
Confidence 235554 3458999999999999999999999999999987 5
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.02 Score=54.98 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=60.4
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCC---------------C-e-----EE--cCccccccH
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG---------------G-T-----EH--LGLPVFNSV 107 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~---------------G-~-----ei--~GvPVy~sl 107 (181)
.........|+|.|++|.+|+.+++.+.+.|++|++.+ ++.+. | . ++ .++--.+++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 44444566799999999999999999999999987643 22110 0 0 00 111111134
Q ss_pred HHHhhccCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAKAETKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp----------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++.+. ++|++|.+.-. ..+..+++.|.++|++.||.+++
T Consensus 154 ~~aLg--giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 154 GPALG--NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHhc--CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 44444 68988877532 23556677777889988887665
|
|
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.032 Score=52.29 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=67.6
Q ss_pred CCeeeccCCceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC---e---E-------Ec---------------
Q 030220 50 HPAVFVDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG---T---E-------HL--------------- 99 (181)
Q Consensus 50 ~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G---~---e-------i~--------------- 99 (181)
.....++...||+|.|+||..|+-.++.+.++ .|++++...-.... . + +.
T Consensus 49 ~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~ 128 (454)
T PLN02696 49 PGRKGWDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADL 128 (454)
T ss_pred CcccccCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCC
Confidence 33356666689999999999999888887774 68888742211110 0 0 00
Q ss_pred --Cccccc---cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchhhhh
Q 030220 100 --GLPVFN---SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIM 174 (181)
Q Consensus 100 --GvPVy~---sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~~~~ 174 (181)
+..|+. .+.++.+..++|++|..+--.+...-..+|+++|.+..+. =|+.-|..|.+||
T Consensus 129 ~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----------------NKESLV~aG~lI~ 192 (454)
T PLN02696 129 DDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----------------NKETLIAGGPFVL 192 (454)
T ss_pred CCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEe----------------cHHHHHhhHHHHH
Confidence 112333 3444444345666666666666666666666666554433 2566667777777
Q ss_pred hhhc
Q 030220 175 KLTR 178 (181)
Q Consensus 175 ~~~~ 178 (181)
++.+
T Consensus 193 ~~ak 196 (454)
T PLN02696 193 PLAK 196 (454)
T ss_pred HHHH
Confidence 6644
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.03 Score=51.43 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=57.9
Q ss_pred CCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-CeEE------cCcccc-cc-HHHHhhccCCcE
Q 030220 48 ASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH------LGLPVF-NS-VAEAKAETKANA 118 (181)
Q Consensus 48 ~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G~ei------~GvPVy-~s-l~e~~~~~~~DV 118 (181)
..++.=+-.+.+||+|.|++|-.|+.+++.+.+.|.+|++..+.... .... ..+... .+ +++.+. ++|+
T Consensus 110 ~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~--~~D~ 187 (436)
T PLN02166 110 GRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILL--EVDQ 187 (436)
T ss_pred CCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccccccc--CCCE
Confidence 33444344555899999999999999999999999998864222110 0000 012111 12 233333 6898
Q ss_pred EEEeeC----hH--------------HHHHHHHHHHHcCCCEEEE
Q 030220 119 SVIYVP----PP--------------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 119 aIdfVP----p~--------------~a~~~~~eaie~GIk~IV~ 145 (181)
++-+.- .. ....+++.|.++|++.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 877652 11 1456677777889865554
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.042 Score=47.02 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------------EE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------------EH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------------ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|.|++|-.|+.+++.+.+.|.++++......... +. .++--..+++++++..++|++|.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 47999999999999999999999999886421111000 00 011111134555544468999887
Q ss_pred eCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
... .....+++.|.++|++.+|.+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 421 13445667777789988776554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.034 Score=47.29 Aligned_cols=87 Identities=23% Similarity=0.228 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cC-CCCCC--eEEcCccccc-cHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VT-PKKGG--TEHLGLPVFN-SVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-Vd-P~~~G--~ei~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++++.|.|. |++|......+...|.+++-+ -+ |++.. .+..+.-+-. +.+++.+ ..||+++.||-++..+++
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~ 77 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVL 77 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHH
Confidence 355667776 999999999999999997755 33 22211 0112222333 5677776 799999999999999999
Q ss_pred HHHHHc-CCCEEEEeC
Q 030220 133 MEAMEA-ELDLVVCIT 147 (181)
Q Consensus 133 ~eaie~-GIk~IV~iT 147 (181)
.+.-+. |=|.||-.|
T Consensus 78 ~~l~~~~~~KIvID~t 93 (211)
T COG2085 78 AELRDALGGKIVIDAT 93 (211)
T ss_pred HHHHHHhCCeEEEecC
Confidence 999874 545555534
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=51.04 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=63.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---------------cCccccccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---------------LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---------------~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ ++||....... .+. -+.+++|++. ++|++++.
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl~ 233 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVLC 233 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEEC
Confidence 367999999 9999999999999999988 45654211000 011 3568999998 79999999
Q ss_pred eChHH-HHHHHHHHHHcCC---CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 123 VPPPF-AAAAIMEAMEAEL---DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 123 VPp~~-a~~~~~eaie~GI---k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+|-.. ....+.+..=+.. ..+|+++-| ..-|...|.++.+.-
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG-~lVde~AL~~AL~~g 279 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARG-GLLDYDAVLAALESG 279 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCc-cccCHHHHHHHHHcC
Confidence 99432 2233322222222 246775555 333445555554433
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.017 Score=60.42 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=72.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM-- 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~-- 133 (181)
-.||.++|. |+||....+.+.+.|+++.+ ..+|.+... .-.|..+.++..|+.+ ++|+++.++|...+.+.+.
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~~g 80 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVFFG 80 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHHhc
Confidence 367999999 99999999999999999653 344443221 0147788899999988 8999999999876655442
Q ss_pred --HHHHcCC--CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 --EAMEAEL--DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 --eaie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+++.-- +.+|. .+=++.+...++.+..++..
T Consensus 81 ~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 81 DEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred hhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhcC
Confidence 2333311 23555 55566677777777765544
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.066 Score=46.05 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC-C--------------Ce--EE--cCccccccHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-G--------------GT--EH--LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~-~--------------G~--ei--~GvPVy~sl~e~~~~~~~DVa 119 (181)
.+|+|.|++|..|+.+++.+.+.|.+|++...... . +. +. .++.=..+++++.++.++|++
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~v 85 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAV 85 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCEE
Confidence 57999999999999999999998999876422110 0 00 00 112111235555554578998
Q ss_pred EEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 120 VIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
|.+... .....+++.|.+.|++.+|.+++
T Consensus 86 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 86 IHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 887632 12345666777789887776554
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.024 Score=51.36 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=66.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC----------------eE---------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------------TE---------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G----------------~e---------i~G--vPVy~--sl~ 108 (181)
.||.|-|+ |+.|+.+.+.+.+. ++++|+..|+.... .+ +.| ++|+. +++
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999987764 79999865432111 00 122 55663 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+++ .+.++|+++.++......+.+...+++|.+.|++ +
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i-S 120 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL-T 120 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe-C
Confidence 664 3358999999999999999999999999999988 5
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=52.70 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=60.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeec-CCCCCC--e---E-------Ec---------------Cccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG--T---E-------HL---------------GLPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagV-dP~~~G--~---e-------i~---------------GvPVy~-- 105 (181)
++||+|.|+||..|+.+.+.+.+. .|+|++.. +.+... + + +. ++.|+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 368999999999999998887764 78988754 222100 0 0 00 122333
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.++.+..++|+++..++-.+...-+..|+++|.+....
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 2555555446899999998888888888999999776663
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.024 Score=51.05 Aligned_cols=86 Identities=16% Similarity=0.082 Sum_probs=64.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----------------E---------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----------------e---------i~G--vPVy~--sl~ 108 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..|+..... + +.| +.|+. +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 58999999 99999999987764 899998655322110 0 122 55553 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++ .+.++|+++.++......+-+...+++|.+.|++
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 653 3458999999999999999999999999999887
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.028 Score=48.21 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC----------hH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP----------PP-- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP----------p~-- 126 (181)
+||+|.|++|-.|+.+++.+.+.| ++++ ++....- ...++.=...++++++++++|++|-+.- |+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIA-LDVHSTD-YCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA 77 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEE-ecccccc-ccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence 479999999999999999998888 6653 4432210 0112332335666676667999886531 22
Q ss_pred ------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.|.. ++
T Consensus 78 ~~~N~~~~~~l~~aa~~~g~~~v~~-Ss 104 (299)
T PRK09987 78 QLLNATSVEAIAKAANEVGAWVVHY-ST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEE-cc
Confidence 2345677777889876654 54
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.032 Score=49.75 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--------------------E-EcCccccccHHHHhhccC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--------------------E-HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--------------------e-i~GvPVy~sl~e~~~~~~ 115 (181)
..+|.|+|+ |-||+-++..+...|++++. .++|..... . ..-+....+++++.+ +
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~ 83 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--D 83 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--C
Confidence 467999999 99999999999999999763 343332110 0 012344557888777 8
Q ss_pred CcEEEEeeChHHH-HHHHHHHHHcCCC---EEEEeCCCCCHHHHHH
Q 030220 116 ANASVIYVPPPFA-AAAIMEAMEAELD---LVVCITEGIPQHDMVI 157 (181)
Q Consensus 116 ~DVaIdfVPp~~a-~~~~~eaie~GIk---~IV~iTtG~~~ed~~~ 157 (181)
+|+++-.+|.... ...+-.-++.-.+ .+..-|.+++..++..
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 9999999996653 3333333333332 2333367777766654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0045 Score=47.50 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCc----cccccHHHHhhccCCcEEEEeeChHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGL----PVFNSVAEAKAETKANASVIYVPPPFA- 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~Gv----PVy~sl~e~~~~~~~DVaIdfVPp~~a- 128 (181)
..+|+|+|+ |.||+.+++.+.+.|...|..+|+.... ++. .+. ..+.+.++..+ ++|++|.++|+...
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence 467999999 9999999999988764444455544311 111 121 23446666655 79999999999874
Q ss_pred -HH--HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 129 -AA--AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 129 -~~--~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+ .....+..|. .++..++. +... .+.+.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~-~v~D~~~~-~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPPSLLKPGG-VVYDVVYN-PLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCHHHcCCCC-EEEEcCcC-CCCC--HHHHHHHHCCC
Confidence 11 1223344444 34433332 3322 56566655444
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.045 Score=45.85 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=57.9
Q ss_pred EEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC-----------hH----
Q 030220 62 ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP-----------PP---- 126 (181)
Q Consensus 62 iVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP-----------p~---- 126 (181)
+|.|++|-.|+.+++.+.+.|.+++...+... .++--+.+++++++..++|++|-+.. +.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~ 75 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIR 75 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHH
Confidence 47899999999999999998888775443322 23434456888777778999998751 11
Q ss_pred ----HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ----FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ----~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.+|.+++
T Consensus 76 ~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 76 ENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2555788888889976665544
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.03 Score=51.57 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=64.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCC------------------------CCe--EEcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKK------------------------GGT--EHLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~------------------------~G~--ei~G--vPVy~-- 105 (181)
.||+|.|+ |+.|+.+.+.+.+. .+++++.-|+.. .|+ .+.| ++|+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 68999999 99999999988765 467885432110 111 1233 56665
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++++ .+.++|+++.++......+.+...+++|.+.|++
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 366664 3358999999999999999999999999999987
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.026 Score=49.11 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=46.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE-------------EcC-------------ccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e-------------i~G-------------vPVy~sl~e~ 110 (181)
.++|.|+|+ |.||..+...+.+.|++|+ .+|+.... +. -.| +.+..+++++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 357999997 9999999999999999866 44543210 00 012 3455688887
Q ss_pred hhccCCcEEEEeeChH
Q 030220 111 KAETKANASVIYVPPP 126 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~ 126 (181)
.+ ++|+++..+|..
T Consensus 80 ~~--~ad~Vi~avpe~ 93 (308)
T PRK06129 80 VA--DADYVQESAPEN 93 (308)
T ss_pred hC--CCCEEEECCcCC
Confidence 77 799999999976
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.025 Score=52.51 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHH-HHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA-AIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~-~~~ 133 (181)
...+|+|+|+ |++|+.+++.+...|.+|+. .+||.+.-+ ...|..+. +++++.+ .+|++|.++....+.+ -..
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence 4568999999 99999999999999999553 466655221 12366553 5778776 7999999986554443 222
Q ss_pred HHHHcCCCEEEEeCCCCCH-HHHHHHHHHh
Q 030220 134 EAMEAELDLVVCITEGIPQ-HDMVINFTRV 162 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~-ed~~~l~~~a 162 (181)
++++.| .+++...++.. -|+..|++.+
T Consensus 287 ~~mK~G--ailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 287 EAMKDG--AILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred hcCCCC--CEEEEcCCCCCccChHHHhhcC
Confidence 333333 34443555554 4566666654
|
|
| >COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=52.80 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHH----
Q 030220 59 TRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA---- 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a---- 128 (181)
++|+|+| -++|+.....+.. .+++++|...-+..- .+ -.|+|.|.+++|+++ ++|++-+.|-...+
T Consensus 5 ksVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~G 80 (361)
T COG4693 5 KSVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQG 80 (361)
T ss_pred ceEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCCc
Confidence 3899999 5899988887777 389999766644321 11 269999999999998 89999888765543
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+.++.+++.||..+.= -=+-.+|+.++.++|++-
T Consensus 81 s~larall~RGi~VlqE--HPl~p~di~~l~rlA~rq 115 (361)
T COG4693 81 SALARALLARGIHVLQE--HPLHPRDIQDLLRLAERQ 115 (361)
T ss_pred HHHHHHHHHcccHHHHh--CCCCHHHHHHHHHHHHHh
Confidence 57888888999987642 335567888888888653
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.034 Score=42.50 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=59.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc-cccc----------cHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFN----------SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv-PVy~----------sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.||+|+|+ |..|+.+++.+...|..-+-.+|+.....+..+- +.|. .+++.+.+..|++-+...+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 578999999 9999999999999888644455655433111110 1111 244444445666666666666
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
...+..++.+ .+...|++.+.. .+....|.+++++.
T Consensus 81 ~~~~~~~~~~-~~~d~vi~~~d~--~~~~~~l~~~~~~~ 116 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVIDCVDS--LAARLLLNEICREY 116 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEEESSS--HHHHHHHHHHHHHT
T ss_pred cccccccccc-cCCCEEEEecCC--HHHHHHHHHHHHHc
Confidence 6555555555 356666653333 33344455555443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.14 Score=42.56 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|.+|+.+++.+.+.|.++++ ++.+.. .++++.+. +++ +..|...++.+.+.+++..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~-~~r~~~-----------~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYG-AARRVD-----------KMEDLASL-GVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 457999999999999999999999999874 333221 11122111 232 4467788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 70 ~~~~~id~li~-~ag~ 84 (273)
T PRK06182 70 AEEGRIDVLVN-NAGY 84 (273)
T ss_pred HhcCCCCEEEE-CCCc
Confidence 65 6888888 5665
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.14 Score=41.02 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|..|+.+++.+.+.|.+++..+...... .. .+...+.+. ..++. +..|...++.+.+.+++..
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA--AE--ELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAV 79 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH--HH--HHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999876544433211 00 011111111 01222 3456667777777777665
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 80 ~~~~~id~vi~-~ag 93 (249)
T PRK12825 80 ERFGRIDILVN-NAG 93 (249)
T ss_pred HHcCCCCEEEE-CCc
Confidence 53 6888877 555
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.043 Score=48.80 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCcchhhHHHH-HhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHH-HHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~-~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~-~~~~ 133 (181)
..+|.|+|+ |+.|+.+.+.+. .+|++|+ ..||..... +-.|+. |.+++|+++ ++|++++.+|-...- ..+.
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~plt~~T~~li~ 219 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPLTDETHHLFG 219 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCCChHHhhccC
Confidence 366999999 999999999987 6899988 456543211 112443 569999998 899999999954432 2221
Q ss_pred -HHHH-cCCCE-EEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 -EAME-AELDL-VVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 -eaie-~GIk~-IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++ .+-.. +|+ |.-=+.-|...|.++.+.-.+
T Consensus 220 ~~~l~~mk~ga~lIN-~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 220 AEQFAKMKSSAIFIN-AGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HHHHhcCCCCeEEEE-CCCccccCHHHHHHHHHcCCe
Confidence 1222 23233 566 444344456666666655444
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.019 Score=50.71 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=47.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+.+.+...|++|+ ++|+.... + +.. +.+++|+++ +.|++++.+|-.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~~~-~--~~~-~~~l~ell~--~sDiv~l~lPlt 208 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPGRP-A--RPD-RLPLDELLP--QVDALTLHCPLT 208 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCCc-c--ccc-ccCHHHHHH--hCCEEEECCCCC
Confidence 357999999 9999999999998999988 45654321 1 111 448999998 799999999953
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.042 Score=46.87 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----------------------------cCc--cccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------LGL--PVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----------------------------~Gv--PVy~-- 105 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..+|+....... ..+ ..++
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 9999999999999887644445544322110 011 1111
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEE
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVC 145 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~ 145 (181)
+++++.+ ++|++|+++-...+.. +-+.|.+++++.|.+
T Consensus 111 i~~~~~~~~~~--~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 111 LDDDELAALIA--GHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCHHHHHHHHh--cCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 1233344 6777777776555544 445566777777765
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.038 Score=49.52 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=76.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC--CCCCCeEE--------cCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGGTEH--------LGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd--P~~~G~ei--------~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
.+|++.|. |..|....+.+.+. ++++|+.++ +.+.|+++ .|+-+.++++.......-+++.+-.-|+
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~- 80 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS- 80 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccch-
Confidence 56888898 99999888887775 999999755 55556432 3566666776665432234444444443
Q ss_pred HHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHhhhhchh
Q 030220 128 AAAAIMEAMEAELDLVVC-----ITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~-----iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+..++++.+|+..|-- +--+.+.+.++|+.++|++=..+
T Consensus 81 -~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~ 125 (350)
T COG3804 81 -VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNA 125 (350)
T ss_pred -HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCc
Confidence 77888999999987643 44678899999999999887664
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.02 Score=51.42 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..++|-.+|. |.||...++.+++.|++ .|..+++.+... +-.|-.|+++..|+.+ ++|++|..+|.......+-.
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~ 110 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKDVLL 110 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhc
Confidence 4688999999 99999999999999999 455666555321 1258899999999988 89999988886544333322
Q ss_pred HHHcCC--------CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 135 AMEAEL--------DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~GI--------k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
- +.|+ +..|- .+=+...-..+|.+.++.
T Consensus 111 g-~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 111 G-KSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISN 146 (327)
T ss_pred C-CCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHh
Confidence 1 3332 22233 344555666666666543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.082 Score=46.21 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=59.0
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe----------E--EcCcc-ccc------cHHHHh
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT----------E--HLGLP-VFN------SVAEAK 111 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~----------e--i~GvP-Vy~------sl~e~~ 111 (181)
+.+.-+++||+|.|++|-.|+.+++.+++.|.+|++... +..... . ...+. +.. .+++++
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~ 88 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC 88 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 345666789999999999999999999999999875422 110000 0 00111 111 244445
Q ss_pred hccCCcEEEEeeC----h--------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 112 AETKANASVIYVP----P--------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 112 ~~~~~DVaIdfVP----p--------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
+ ++|++|-+.- + .....+++.|.+.|++.+|-++
T Consensus 89 ~--~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 89 K--NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred h--CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 5 6898877742 1 1244677788888998766544
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.088 Score=46.08 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC-----------CeEE----cCccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-----------GTEH----LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~-----------G~ei----~GvPVy~sl~e~~~~~~~DVaI 120 (181)
++++|+|.|++|-.|+.+++.+.+.|.+|++.+. +... +..+ .++.-..+++++++ ++|++|
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence 4567999999999999999999999999876432 2110 0001 11111224566666 689888
Q ss_pred EeeCh-------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 121 IYVPP-------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 121 dfVPp-------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-+..+ .....+++.|.++|++.+|.+++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 87643 13456677788889987776554
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.018 Score=53.44 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=63.9
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe-------------------EE--------cC--ccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-------------------EH--------LG--LPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~-------------------ei--------~G--vPVy~--s 106 (181)
.||.|.|+ |+.|+.+.+...+ .+++||+..||..... ++ .| +.|+. +
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 59999999 9999999998876 5899998766643221 00 12 34442 3
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++. ++.++|+++.++......+.+...+++|.|.||+
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 44443 3347999999999988899999999999988877
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.076 Score=45.27 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~G--vPVy~-- 105 (181)
..+|+|+|+ |-+|..+++.+...|..-+..+|+...... + .+ +..++
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 378999999 999999999999988774445565443310 0 01 11221
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITE 148 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTt 148 (181)
+++++++ ++|++|+++-...+.. .-+.|.++|+|.|.+-+.
T Consensus 103 i~~~~~~~~~~--~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~ 148 (240)
T TIGR02355 103 LDDAELAALIA--EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAI 148 (240)
T ss_pred CCHHHHHHHhh--cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1334444 6788888876655544 446677888888766433
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.075 Score=46.23 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=59.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCC----CCCeEE---cC------ccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPK----KGGTEH---LG------LPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~----~~G~ei---~G------vPVy~sl~e~~~~~~~DVaIdfV 123 (181)
++||+|+|+ |.+|......+.+.|.++... -++. ..|..+ .| ++++.+.++ .. .+|++|++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-cC--CCCEEEEEe
Confidence 368999999 999999998888878775432 1220 011111 11 334444443 23 689999999
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEeCCCCCHHHH
Q 030220 124 PPPFAAAAIMEAMEAE--LDLVVCITEGIPQHDM 155 (181)
Q Consensus 124 Pp~~a~~~~~eaie~G--Ik~IV~iTtG~~~ed~ 155 (181)
+.....++++.+...- -..|+.+.-|+..++.
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~ 114 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQ 114 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9998887777665431 1236666789876543
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.082 Score=40.60 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+|+|+|+ |.+|..+++.+...|..-+..+|+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 5899999 99999999999999886444666654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.029 Score=48.69 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-------------E------------EcCccccccHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-------------E------------HLGLPVFNSVAEA 110 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-------------e------------i~GvPVy~sl~e~ 110 (181)
+..+|.|+|+ |.||.-++..+...|++++. .++|..... + ..-+.+.+++++
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 3468999999 99999999988888999663 455443211 0 012335667754
Q ss_pred hhccCCcEEEEeeChHHHHHHHH-HHHHc-----CCCEEEEeCCCCCHHHHHHHHH
Q 030220 111 KAETKANASVIYVPPPFAAAAIM-EAMEA-----ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~-eaie~-----GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
.+ ++|+++-.+|.+...+-.. ..++. +.-.+-+ |++++..++..-..
T Consensus 82 ~~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~sn-TS~~~~~~la~~~~ 134 (286)
T PRK07819 82 FA--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASN-TSSIPIMKLAAATK 134 (286)
T ss_pred hC--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEEC-CCCCCHHHHHhhcC
Confidence 45 7999999999876544332 22233 3333333 89999988876433
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.056 Score=44.78 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=53.1
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCcccc--ccHHHHhhccCCcEEEEeeCh-----------
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPVF--NSVAEAKAETKANASVIYVPP----------- 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvPVy--~sl~e~~~~~~~DVaIdfVPp----------- 125 (181)
|+|.|++|-.|+.+++.+.+.|.+|++... +..... ...++..+ ....+.+. ++|++|.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~~ 78 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEER 78 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHHH
Confidence 578999999999999999999999886432 222111 00111111 23334444 79999877732
Q ss_pred ---------HHHHHHHHHHHHcCCC-EEEEeC
Q 030220 126 ---------PFAAAAIMEAMEAELD-LVVCIT 147 (181)
Q Consensus 126 ---------~~a~~~~~eaie~GIk-~IV~iT 147 (181)
..++.+++.|.++|++ .+++.+
T Consensus 79 ~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~ 110 (292)
T TIGR01777 79 KQEIRDSRIDTTRALVEAIAAAEQKPKVFISA 110 (292)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCCCceEEEEe
Confidence 1156777788888984 444434
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.0057 Score=49.72 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E----------------------EcCccccccHHHHhhc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E----------------------HLGLPVFNSVAEAKAE 113 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e----------------------i~GvPVy~sl~e~~~~ 113 (181)
||.|+|+ |.||+.+...+...|++++- ..|++.... . ...+.+..+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--
Confidence 6999999 99999999999999999662 333332110 0 12345566777754
Q ss_pred cCCcEEEEeeChHHH-----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 114 TKANASVIYVPPPFA-----AAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 114 ~~~DVaIdfVPp~~a-----~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
++|++|-.+|.+.- +.-++.......-..-+ |.+++..++..-
T Consensus 78 -~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn-TSsl~i~~la~~ 125 (180)
T PF02737_consen 78 -DADLVIEAIPEDLELKQELFAELDEICPPDTILASN-TSSLSISELAAA 125 (180)
T ss_dssp -TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE---SSS-HHHHHTT
T ss_pred -hhheehhhccccHHHHHHHHHHHHHHhCCCceEEec-CCCCCHHHHHhc
Confidence 68999999987652 22333333333444455 789988887543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.089 Score=44.43 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|..+++.+...|..-+-.+|+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 367999999 99999999999998877444566554
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.2 Score=40.61 Aligned_cols=84 Identities=21% Similarity=0.162 Sum_probs=56.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|.+|+.+++.+.+.|.+++...+..... ... .++++.+ ...++ ..|....+.+.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPR----RVK---WLEDQKA-LGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHH----HHH---HHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4588999999999999999999999988654432211 001 1222211 12333 36778888888888887
Q ss_pred HHc--CCCEEEEeCCCCC
Q 030220 136 MEA--ELDLVVCITEGIP 151 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~~ 151 (181)
.+. ++..+|+ ..|..
T Consensus 76 ~~~~~~id~li~-~ag~~ 92 (246)
T PRK12938 76 KAEVGEIDVLVN-NAGIT 92 (246)
T ss_pred HHHhCCCCEEEE-CCCCC
Confidence 765 6888888 66763
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.1 Score=42.79 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeE--------------E-------cCccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTE--------------H-------LGLPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~e--------------i-------~GvPVy~sl~e~~~~~~~ 116 (181)
+||.|+|. |..|-..+-.+.+.|++++| .+|+.+...- + ..+-...+.+++++ ++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--~a 77 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--DA 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--H-
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--cc
Confidence 58999999 99999888889999999886 2333321100 0 12344456777666 79
Q ss_pred cEEEEeeCh----------HHHHHHHHHHHHcCCC-EEEEeCC----CCCHHHHHHHHHHh
Q 030220 117 NASVIYVPP----------PFAAAAIMEAMEAELD-LVVCITE----GIPQHDMVINFTRV 162 (181)
Q Consensus 117 DVaIdfVPp----------~~a~~~~~eaie~GIk-~IV~iTt----G~~~ed~~~l~~~a 162 (181)
|+.+++||- ..+.++++...++--+ .+|++-+ |.+++-+..+.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 999999983 3456666666654222 3333343 55554444555544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.065 Score=48.90 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=61.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-----CCeEeeecCCCCCCe----------------------------------EEc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGGT----------------------------------EHL 99 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-----g~~IVagVdP~~~G~----------------------------------ei~ 99 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..||...-. .++
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999 99999999987763 689998777521100 012
Q ss_pred C--cccc-c--cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 100 G--LPVF-N--SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 100 G--vPVy-~--sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
| +.++ . +.++++ .+.++|++|.++-.-...+-+..=+++|.|.|++ |.
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii-SA 136 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI-SA 136 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE-CC
Confidence 3 3444 2 566664 3458999997776666666666677899999987 53
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.27 Score=40.19 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=54.7
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~e 134 (181)
-+..+++|.|++|..|+.+++.+.+.|.+++ .++..... . + .+.+...+.++. +..|+..++...+++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~-~~~r~~~~--~---~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVH-VCDVSEAA--L---A---ATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeCCHHH--H---H---HHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 3567899999999999999999999999966 44432211 1 0 111111111112 45577778888887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..|+. ..|.
T Consensus 80 ~~~~~~~~d~vi~-~ag~ 96 (264)
T PRK12829 80 AVERFGGLDVLVN-NAGI 96 (264)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 6553 7888887 4444
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=47.40 Aligned_cols=90 Identities=12% Similarity=-0.027 Sum_probs=57.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----------------------------cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----------------------------~G--vPVy~-- 105 (181)
+.+|+|+|+ |-+|..+++++...|+.-+..+|+....... .+ +..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 478999999 9999999999999988855566665433110 01 12222
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~ 150 (181)
+..++++ ++|++|+++-.-.... +-+.|.+.+++.|.+-+.|+
T Consensus 117 ~~~~~~~~~~~--~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSENALDILA--PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHhHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 1233444 6788888876554443 44566778888876644443
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=41.46 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=50.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... ++++.. .+++ ...|+..++.+...++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~-~~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIA-TARDAAA-----------LAALQA-LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEE-EECCHHH-----------HHHHHh-ccceEEEecCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988999764 3433211 111111 1122 45667777777776655433
Q ss_pred cCCCEEEEeCCCCC
Q 030220 138 AELDLVVCITEGIP 151 (181)
Q Consensus 138 ~GIk~IV~iTtG~~ 151 (181)
.++..++. +.|..
T Consensus 69 ~~~d~vi~-~ag~~ 81 (222)
T PRK06953 69 EALDAAVY-VAGVY 81 (222)
T ss_pred CCCCEEEE-CCCcc
Confidence 45788877 66653
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.075 Score=52.84 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=71.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---------CCeEeeecCCCCCCeEEcCccc-------------cc--cHHHHhh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGGTEHLGLPV-------------FN--SVAEAKA 112 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---------g~~IVagVdP~~~G~ei~GvPV-------------y~--sl~e~~~ 112 (181)
+..+|+++|+ |..|+..++.+.+. +++|++..|....--.-.|+.. ++ .+-|.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 5789999999 99999888876541 3556665443221000012211 11 2223333
Q ss_pred cc--CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHHhhhhchhc
Q 030220 113 ET--KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP--QHDMVINFTRVNILLVAF 169 (181)
Q Consensus 113 ~~--~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~--~ed~~~l~~~ak~ipv~~ 169 (181)
.. ..||+|++++.....+...+++++|++.|-.-=..+. .++..+|.++|++-.+.+
T Consensus 543 ~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 543 EYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred hcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence 22 3589999999988888889999999998755112222 267888998887765544
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.069 Score=49.19 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=65.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC----------eEE-----------------cCccccccH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG----------TEH-----------------LGLPVFNSV 107 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G----------~ei-----------------~GvPVy~sl 107 (181)
++..||-++|+ |.||+.++..... .|+++|+.-|.+..+ .+. .-+-|-++.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 44589999999 9999977777777 599999864433222 010 124555567
Q ss_pred HHHhhccCCcEEEEee-ChHHHHHHHHHHHHcCCCEEE
Q 030220 108 AEAKAETKANASVIYV-PPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfV-Pp~~a~~~~~eaie~GIk~IV 144 (181)
+++...-.+|++|+.+ .|+...+...+|+++|.++|.
T Consensus 94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 7776655689999987 578888999999999999974
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.077 Score=47.95 Aligned_cols=106 Identities=16% Similarity=0.025 Sum_probs=68.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh----------CCeEeeecCCCCCCe-EEcCcc---ccccH-----HHHhhccCCc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKKGGT-EHLGLP---VFNSV-----AEAKAETKAN 117 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~----------g~~IVagVdP~~~G~-ei~GvP---Vy~sl-----~e~~~~~~~D 117 (181)
+..||.|+|+ |.-|+.+.+.+.+. ++++++..+....-. .+.+.+ ...+. .++....++|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 4578999999 99999888866652 355666666433211 122232 22234 5666656789
Q ss_pred EEEEeeCh--HHHH--HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 118 ASVIYVPP--PFAA--AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 118 VaIdfVPp--~~a~--~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.+..++. +.++ +...+++++|.+.|=.-=..+..+ -.+|.++|++
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~-~~el~~~A~~ 130 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALH-YHELREAAEK 130 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhh-HHHHHHHHHH
Confidence 88887776 3444 899999999998763312333333 6677777776
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.15 Score=42.59 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=28.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|..+++.+...|+.-+..+|+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 468999999 99999999999998887555666554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.24 Score=40.62 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|..|+.+++.+.+.|.+++ .++..... . ..+.+... .+++ +..|...++.+.+++++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~-~~~r~~~~--~------~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI-ATGRRQER--L------QELKDELG-DNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEECCHHH--H------HHHHHHhc-cceEEEEecCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999876 34433210 0 01111111 1232 34577778888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..++. ..|+
T Consensus 71 ~~~~id~vi~-~ag~ 84 (248)
T PRK10538 71 EWRNIDVLVN-NAGL 84 (248)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6888887 5554
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=41.83 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=50.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
.+|+|.|++|.+|+.+++.+.+.|.+|++ ++..... .. .+++. .... -..+|...++.+.++++++.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r~~~~--~~------~~~~~-~~~~-~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTA-TVRGPQQ--DT------ALQAL-PGVH-IEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEE-EeCCCcc--hH------HHHhc-cccc-eEEcCCCCHHHHHHHHHHhhcC
Confidence 46999999999999999999999998774 4433211 10 11111 1011 1234556677777777777666
Q ss_pred CCCEEEEeCCCC
Q 030220 139 ELDLVVCITEGI 150 (181)
Q Consensus 139 GIk~IV~iTtG~ 150 (181)
++..|+. ..|.
T Consensus 71 ~id~vi~-~ag~ 81 (225)
T PRK08177 71 RFDLLFV-NAGI 81 (225)
T ss_pred CCCEEEE-cCcc
Confidence 7888776 4444
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.15 Score=42.44 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=41.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--CeEeeecCCC---CCCeE---E---cCccc-------cccHHHHhhccCCcEEEE
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK---KGGTE---H---LGLPV-------FNSVAEAKAETKANASVI 121 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~---~~G~e---i---~GvPV-------y~sl~e~~~~~~~DVaId 121 (181)
+|+|.|+||.+|+.+++.+.+.| .++++ ++.. ..... . .++.+ .+++.++++..++|++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 79 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIV-LDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVH 79 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEE-ecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence 58999999999999999988865 67774 3321 00000 0 01222 224666676556999998
Q ss_pred eeC
Q 030220 122 YVP 124 (181)
Q Consensus 122 fVP 124 (181)
+..
T Consensus 80 ~a~ 82 (317)
T TIGR01181 80 FAA 82 (317)
T ss_pred ccc
Confidence 874
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.078 Score=48.82 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=41.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCc-c---------------ccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGL-P---------------VFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~Gv-P---------------Vy~sl~e~~~~~~~DVaI 120 (181)
.+||.|+|. |.||.-....+.+ ++++++ .+|+.+...-..|. | .+.+..+..+ ++|+.+
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~advvi 81 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECNFYI 81 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCCEEE
Confidence 378999999 9999977777655 788774 34454432111222 2 2333334445 799999
Q ss_pred EeeChH
Q 030220 121 IYVPPP 126 (181)
Q Consensus 121 dfVPp~ 126 (181)
++||-.
T Consensus 82 i~Vptp 87 (425)
T PRK15182 82 ITVPTP 87 (425)
T ss_pred EEcCCC
Confidence 999954
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.21 Score=42.36 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=55.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCe------------E---E-cCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT------------E---H-LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~------------e---i-~GvPVy~sl~e~~~~~~~DVa 119 (181)
+.++|+|.|++|-.|+.+++.+.+.|.++++.+ ++..... . + .++.-...++++++ ++|++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD--GCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc--CCCEE
Confidence 346899999999999999999999999987643 3321100 0 0 11111123556666 68988
Q ss_pred EEeeCh--------H-H--------HHHHHHHHHHc-CCCEEEEeCC
Q 030220 120 VIYVPP--------P-F--------AAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp--------~-~--------a~~~~~eaie~-GIk~IV~iTt 148 (181)
|-+..+ . . ...+++.|.+. +++.+|.+++
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 776532 1 1 22345556666 8887776554
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.21 Score=43.37 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---c----Ccc-cc------ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----GLP-VF------NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~----GvP-Vy------~sl~e~~~~~~~DVaIdf 122 (181)
+++|+|.|++|-.|+.+++.+.+.|.+|++. +..... ... . .+. +. .++.+++++.++|++|.+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGY-SLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEE-eCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 4689999999999999999999999998753 221111 000 0 111 11 135566665578988877
Q ss_pred eCh------------------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
... .....+++.|.+.+ ++.+|.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 631 12345566666666 666666565
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.054 Score=48.71 Aligned_cols=84 Identities=8% Similarity=-0.152 Sum_probs=60.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEe---eecCC-CCCCeEE--cC--ccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMV---GGVTP-KKGGTEH--LG--LPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IV---agVdP-~~~G~ei--~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
..+|+| |+||..|+...+.+.+++|.+- ..-.+ ...|+.+ .| ++|-.--++..+ ++|+++. .+.+...
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~--~vDia~f-ag~~~s~ 78 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWA--DFNYVFF-AGKMAQA 78 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcc--cCCEEEE-cCHHHHH
Confidence 467999 9999999999999999888622 11112 4444433 22 444432222334 7999999 9999999
Q ss_pred HHHHHHHHcCCCEEEE
Q 030220 130 AAIMEAMEAELDLVVC 145 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~ 145 (181)
+-+..+.++|...|=+
T Consensus 79 ~~ap~a~~aG~~VIDn 94 (322)
T PRK06901 79 EHLAQAAEAGCIVIDL 94 (322)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 9999999999888755
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.35 Score=40.00 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=51.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.++++. +..... ... .. ++ -+-.|...++...++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~-~r~~~~--~~~----------~~--~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGT-SRNPAR--AAP----------IP--GVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCChhh--ccc----------cC--CCeeEEeecCCHHHHHHHHHHHH
Confidence 3569999999999999999999999997743 332211 100 00 11 13456677888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 69 ~~~g~~d~li~-~ag~ 83 (270)
T PRK06179 69 ARAGRIDVLVN-NAGV 83 (270)
T ss_pred HhCCCCCEEEE-CCCC
Confidence 54 4677777 6775
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.13 Score=51.23 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=67.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH--------hC--CeEeeecCCCCCCeEEcCcc------------cccc---HHHHh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKKGGTEHLGLP------------VFNS---VAEAK 111 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~--------~g--~~IVagVdP~~~G~ei~GvP------------Vy~s---l~e~~ 111 (181)
+..+|+++|+ |+.|+.+++.+.+ +| ++|++..|....--.-.|+. -..+ +-|.+
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i 535 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWL 535 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHH
Confidence 5688999999 9999977776543 24 44676554332100011211 1112 22333
Q ss_pred hccCC--cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHhhhhc
Q 030220 112 AETKA--NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI---PQHDMVINFTRVNILL 166 (181)
Q Consensus 112 ~~~~~--DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~---~~ed~~~l~~~ak~ip 166 (181)
...++ +++|++++.+........|+++|++.|-. --.. +.+...+|.++|++=.
T Consensus 536 ~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta-NK~~~a~~~~~~~~l~~~a~~~~ 594 (810)
T PRK09466 536 RAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA-NKLAGSSPSNFYRQIKDAFAKTG 594 (810)
T ss_pred hhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC-CcccccccHHHHHHHHHHHHHcC
Confidence 32333 59999999998888888999999998754 2221 4578888888887533
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.17 Score=46.09 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=62.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
-.++|-.+|.|+|+-| +|++.++.....|+++++ +|.... .-+|+++....|.-|+++-...-.+.+
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~v-is~~~~-----------kkeea~~~LGAd~fv~~~~d~d~~~~~ 243 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTV-ISTSSK-----------KKEEAIKSLGADVFVDSTEDPDIMKAI 243 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEE-EeCCch-----------hHHHHHHhcCcceeEEecCCHHHHHHH
Confidence 3556889999999966 999999999999999884 443321 124556656677777777555555566
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
..+.+-++..+.++ +++.++.+.++.
T Consensus 244 ~~~~dg~~~~v~~~----a~~~~~~~~~~l 269 (360)
T KOG0023|consen 244 MKTTDGGIDTVSNL----AEHALEPLLGLL 269 (360)
T ss_pred HHhhcCcceeeeec----cccchHHHHHHh
Confidence 66677777777774 444444444443
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=47.57 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe------E-------Ec---------------C--ccccc-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT------E-------HL---------------G--LPVFN- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~------e-------i~---------------G--vPVy~- 105 (181)
.||+|.|.||..|+...+.+.++ .|++++...-..... + +. | ..|+.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 58999999999999888877763 688887422111110 0 10 1 23443
Q ss_pred --cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchhhhhhhhc
Q 030220 106 --SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNFIMKLTR 178 (181)
Q Consensus 106 --sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~~~~~~~~ 178 (181)
.+.++.+..++|+++..+.-.....-..+|+++|.+..+. =|+.-|+-|.++|++.+
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA----------------NKEsLV~aG~li~~~a~ 140 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA----------------NKESLVTAGHLFLDAVK 140 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe----------------chhHHHhhHHHHHHHHH
Confidence 2344444345788888888888888888888888776544 25555666666665543
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.28 Score=45.15 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-CeEE------cCccc-ccc-HHHHhhccCCcEEEEeeC---
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH------LGLPV-FNS-VAEAKAETKANASVIYVP--- 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G~ei------~GvPV-y~s-l~e~~~~~~~DVaIdfVP--- 124 (181)
+.+||+|.|+||-.|+.+++.+++.|.+|++..+.... ...+ .++.. ..+ +++.+. ++|++|-+.-
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~--~~D~ViHlAa~~~ 195 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILL--EVDQIYHLACPAS 195 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhc--CCCEEEEeeeecc
Confidence 55889999999999999999999999998864221100 0000 11111 112 333444 6888776652
Q ss_pred -------hH--------HHHHHHHHHHHcCCCEEEE
Q 030220 125 -------PP--------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 -------p~--------~a~~~~~eaie~GIk~IV~ 145 (181)
|. ....+++.|.+.|++.|..
T Consensus 196 ~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 196 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 11 2356677788889876554
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.18 Score=45.27 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=52.9
Q ss_pred hhhHHHHHhCCeEeeecCCCCCC--------eEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHHHHHcCC--C
Q 030220 73 FHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAMEAEL--D 141 (181)
Q Consensus 73 ~~~k~~~~~g~~IVagVdP~~~G--------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~eaie~GI--k 141 (181)
.....+.+.|.+|. ..|++... -.-.|+.+..+..++.+ ++|++|+++|+.. +.++++.+.++-- .
T Consensus 34 ~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~ 110 (342)
T PRK12557 34 RMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPENA 110 (342)
T ss_pred HHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCCCC
Confidence 55556666787755 44554320 01147777778888776 8999999999998 7777776554421 2
Q ss_pred EEEEeCCCCCHHHH-HHHHHH
Q 030220 142 LVVCITEGIPQHDM-VINFTR 161 (181)
Q Consensus 142 ~IV~iTtG~~~ed~-~~l~~~ 161 (181)
.|+. +..++.... ..+.+.
T Consensus 111 IVId-~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 111 VICN-TCTVSPVVLYYSLEGE 130 (342)
T ss_pred EEEE-ecCCCHHHHHHHHHHH
Confidence 3455 444455554 455444
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.056 Score=49.21 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEc-----------------Cccccc--cHHHHhhccCCcE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHL-----------------GLPVFN--SVAEAKAETKANA 118 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~-----------------GvPVy~--sl~e~~~~~~~DV 118 (181)
+||.|+|. |.||.-....+. .|+++++ .+|+.+...-.. +..... +.+++.+ ++|+
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~ 76 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY 76 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence 37999999 999998875554 4888774 344443221001 111212 2455555 7999
Q ss_pred EEEeeChH-----------HHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 119 SVIYVPPP-----------FAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 119 aIdfVPp~-----------~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++++||.. .+.++++...+..- +.||. .+=++..-..++.+...+
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~-~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVI-KSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEE-eeecCCchHHHHHHHhhc
Confidence 99999954 44555554444211 23444 444555555566554443
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.25 Score=42.21 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-----eEE----cCcccc-------ccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----TEH----LGLPVF-------NSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-----~ei----~GvPVy-------~sl~e~~~~~~~DVaI 120 (181)
..+|+|.|++|..|+.+++.+.+.|.++++.+. +.... .++ .++.++ .++.+++. ++|.++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~--~~d~v~ 83 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK--GCSGLF 83 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc--CCCEEE
Confidence 457999999999999999999999999886543 11100 000 112222 13455555 678765
Q ss_pred Eee-Ch---------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030220 121 IYV-PP---------------PFAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 121 dfV-Pp---------------~~a~~~~~eaie~-GIk~IV~iTt 148 (181)
-.. ++ ..+..+++.|.+. +++.||.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS 128 (297)
T PLN02583 84 CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSS 128 (297)
T ss_pred EeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence 332 11 2455567777776 6888776554
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.16 Score=46.11 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
++.+|+|+|+ |-.|..+++.+...|+.-+..+|+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 4578999999 99999999999998887555666554
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.17 Score=45.61 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe--------------E--EcCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~--------------e--i~GvPVy~sl~e~~~~~~~DVa 119 (181)
..++|+|-|++|-.|+-+++.+++.|++|.|-|. |+.... + ..++--|++++++++ +||.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence 4678999999999999999999999999998654 443110 0 135666778888888 78876
Q ss_pred EEeeCh-----------------HHHHHHHHHHHHcC-CCEEEEeC
Q 030220 120 VIYVPP-----------------PFAAAAIMEAMEAE-LDLVVCIT 147 (181)
Q Consensus 120 IdfVPp-----------------~~a~~~~~eaie~G-Ik~IV~iT 147 (181)
+=+-.| +.+..+++-|.+.. |+.||. |
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~-T 127 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY-T 127 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE-e
Confidence 533222 23455667777777 888886 5
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.049 Score=47.58 Aligned_cols=86 Identities=14% Similarity=0.287 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccc--cccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..+|+|+|+ |++|+.+.+.+...|.++. .+|+..... . -.|... +.++++..+ ++|+++.++|........
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~~ 226 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTADV 226 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHHH
Confidence 368999999 9999999999999999865 444432110 0 013332 235677776 799999999877544332
Q ss_pred HHHHHcCCCEEEEeCC
Q 030220 133 MEAMEAELDLVVCITE 148 (181)
Q Consensus 133 ~eaie~GIk~IV~iTt 148 (181)
...+..+ ..++.++.
T Consensus 227 l~~~k~~-aliIDlas 241 (287)
T TIGR02853 227 LSKLPKH-AVIIDLAS 241 (287)
T ss_pred HhcCCCC-eEEEEeCc
Confidence 2233332 34555443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.51 Score=37.73 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
+.+++|.|++|.+|+.+++.+.+.|.+++.... +.. . . -.+.+.+.+ ...++. +-.|...++...++++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~--~--~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-G--A--EALVAEIGA--LGGKALAVQGDVSDAESVERAVDEA 77 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-H--H--HHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357999999999999999999999999754432 221 1 0 011111111 111222 223778888888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (248)
T PRK05557 78 KAEFGGVDILVN-NAGI 93 (248)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 663 6888887 5554
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.14 Score=41.50 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=50.4
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------E-cCccc--cc-----
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------H-LGLPV--FN----- 105 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------i-~GvPV--y~----- 105 (181)
||+|+|+ |-+|..+++.+...|+.-+..+|+.....+ + ..+.+ ++
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899999 999999999998888863334554431100 0 01111 11
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHH-HHHHHHHc-CCCEEEE
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAA-AIMEAMEA-ELDLVVC 145 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~-GIk~IV~ 145 (181)
+++++++ ++|++|+++-...+.. ..+++.++ +++.|.+
T Consensus 80 ~~~~~~l~--~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 80 NNLEGLFG--DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred hhHHHHhc--CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 2334444 6777777765555543 55666666 7777765
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.14 Score=42.73 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---------------------------cCcc--ccc---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---------------------------LGLP--VFN--- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---------------------------~GvP--Vy~--- 105 (181)
..+|+|+|+ |-+|..+++.+...|..-+..+|+.....+. .++. .++
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 467999999 9999999999988887744455554221000 0111 111
Q ss_pred ---cHHHHhhccCCcEEEEeeChHHH-HHHHHHHHHc-CCCEEEE
Q 030220 106 ---SVAEAKAETKANASVIYVPPPFA-AAAIMEAMEA-ELDLVVC 145 (181)
Q Consensus 106 ---sl~e~~~~~~~DVaIdfVPp~~a-~~~~~eaie~-GIk~IV~ 145 (181)
+++++.+ ++|++|+++-.... +...+.|.++ +++.|.+
T Consensus 107 ~~~~~~~~~~--~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 107 DEDNIEELFK--DCDIVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred CHHHHHHHHc--CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 1234444 67888877544444 4456677777 7777765
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=48.18 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCcccc----------------c--------cHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPVF----------------N--------SVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvPVy----------------~--------sl~e~~ 111 (181)
..+|+|+|+ |+.|+..++.+.+.|.+||+..|.. |.-+ .|+.+- + +.+++.
T Consensus 232 g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~--G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 232 GKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSS--GYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCC--ceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 478999999 9999999999999999999864521 1000 122211 1 222222
Q ss_pred hccCCcEEEEeeChHHH-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 112 AETKANASVIYVPPPFA-AAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~~a-~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
+.+|||.|-+...... .+++...++.+.+.|+.-+-|-...+..++.
T Consensus 309 -~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 309 -SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred -ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 3478988877654433 3445555566899999844443333333333
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.48 Score=37.75 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|..|+.+++.+.+.|.+++ .++.+... .. +.+++... ..++ +..|....+...++++++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~~~--~~-----~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA-LIGRGAAP--LS-----QTLPGVPA-DALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCChHh--HH-----HHHHHHhh-cCceEEEeecCCHHHHHHHHHHHH
Confidence 35699999999999999999999899866 44433211 00 01111111 1122 3466677777777777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 78 ~~~~~~d~vi~-~ag~ 92 (239)
T PRK12828 78 RQFGRLDALVN-IAGA 92 (239)
T ss_pred HHhCCcCEEEE-CCcc
Confidence 54 6788877 5443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.58 Score=38.40 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC-CcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~-~DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++.+.. .+++..++.+ .-+..|...++.+.+.++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVV-GDIDPE-----------AGKAAADEVGGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeCCHH-----------HHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHH
Confidence 367999999999999999999999998764 332211 1111111111 124557788888888888876
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 6788887 5554
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.23 Score=41.37 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|-+|+.+++.+.+.|.+|++ ++.+.. .++++.. .+++ +..|...++.+.++++++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~-~~r~~~-----------~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWA-TARKAE-----------DVEALAA-AGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHH-CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999774 343221 1222221 1333 44788888999999888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|+
T Consensus 69 ~~~~id~vi~-~ag~ 82 (274)
T PRK05693 69 EHGGLDVLIN-NAGY 82 (274)
T ss_pred hcCCCCEEEE-CCCC
Confidence 4 5788888 6664
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.052 Score=51.18 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
..+|+|+|+ |+.|+.+++.+...|.+|+. .+||.+... ...|+.+. +++++++ +.|+++.++....+.. .+.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~--~e~ 327 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIM--VDH 327 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchH--HHH
Confidence 467999999 99999999999989999664 456653211 12456554 6788877 7899998776554321 223
Q ss_pred HHc-CCCEEEEeCCCC-CHHHHHHHHHHh
Q 030220 136 MEA-ELDLVVCITEGI-PQHDMVINFTRV 162 (181)
Q Consensus 136 ie~-GIk~IV~iTtG~-~~ed~~~l~~~a 162 (181)
++. +-..+++.+.++ ++=|...|.+++
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~~ 356 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETYP 356 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence 322 333344435554 577788888773
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=43.84 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=57.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe---EEcCccccc---c----HHHH-hhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT---EHLGLPVFN---S----VAEA-KAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~---ei~GvPVy~---s----l~e~-~~~~~~DVaIdfVPp~ 126 (181)
++++|+|+ |++|..+++.+.+.|.+++.. .|+....+ +-.+..++. + |+++ ++ ++|+.|..+..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~--~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID--DADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC--cCCEEEEeeCCC
Confidence 47999999 999999999999999998853 33333221 112333332 2 4444 22 799999999985
Q ss_pred HHHHH-HHHHHH-cCCCEEEEeC
Q 030220 127 FAAAA-IMEAME-AELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~-~~eaie-~GIk~IV~iT 147 (181)
...-+ +..+.+ .|++.+|.-+
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEe
Confidence 55444 444545 5999998833
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.25 Score=42.74 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-------------eEE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-------------TEH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-------------~ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++|+|.|+||-.|+.+++.+.+.|.+++..++.... + .++ .++.-..++++++++.++|++|-+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 81 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHL 81 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEEC
Confidence 589999999999999999999988775544442210 0 000 112222246666665568988877
Q ss_pred e
Q 030220 123 V 123 (181)
Q Consensus 123 V 123 (181)
.
T Consensus 82 A 82 (355)
T PRK10217 82 A 82 (355)
T ss_pred C
Confidence 5
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.055 Score=48.95 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=57.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCC--eEEcCcccccc-----HHHHhhccCCcEEEEeeC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGG--TEHLGLPVFNS-----VAEAKAETKANASVIYVP 124 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G--~ei~GvPVy~s-----l~e~~~~~~~DVaIdfVP 124 (181)
..+.|-.+|+|+|+ |-+|+..++.....|.++++. .++++.. +++..--++++ ++++.+ .+|++|++++
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~--~~d~ii~tv~ 238 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE--IADAIIDTVG 238 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh--hCcEEEECCC
Confidence 45778899999999 899999999999889998863 4454421 12222223331 233322 3999999999
Q ss_pred hHHHHHHHHHHHHcCCCEE
Q 030220 125 PPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~I 143 (181)
....+....++..|=+.+
T Consensus 239 -~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 239 -PATLEPSLKALRRGGTLV 256 (339)
T ss_pred -hhhHHHHHHHHhcCCEEE
Confidence 666666666666644443
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.22 Score=43.33 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=28.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
.++|+|.|++|-.|+.+++.+.+.|.+|++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999999999999998864
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.35 Score=44.35 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+++|+|.|++|-.|+.+++.+.+.|.+|++
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 367999999999999999999999999775
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.13 Score=46.00 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |.+|+.+++.+...|..-+..||+..
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467999999 99999999999998886555677654
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.5 Score=39.55 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|.+|+.+++.+.+.|.++++. +.... .++++.+.. ++ -+..|...++.+.+.++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~-~r~~~-----------~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGT-VRSEA-----------ARADFEALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEE-eCCHH-----------HHHHHHhhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 3569999999999999999999999997753 33221 112211111 12 234577788888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 72 ~~~~~~~~d~vv~-~ag~ 88 (277)
T PRK06180 72 AEATFGPIDVLVN-NAGY 88 (277)
T ss_pred HHHHhCCCCEEEE-CCCc
Confidence 7764 5788887 6565
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.39 Score=40.26 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.+|+. ++.+.. .++++.+ .+++ +..|...++.+.++++++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~-~~r~~~-----------~~~~l~~-~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFA-TCRKEE-----------DVAALEA-EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHHHH-CCceEEEccCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999774 333221 1122221 1333 3467788888888888886
Q ss_pred Hc---CCCEEEEeCCCC
Q 030220 137 EA---ELDLVVCITEGI 150 (181)
Q Consensus 137 e~---GIk~IV~iTtG~ 150 (181)
+. .+..+|+ ..|+
T Consensus 71 ~~~~g~id~li~-~Ag~ 86 (277)
T PRK05993 71 ELSGGRLDALFN-NGAY 86 (277)
T ss_pred HHcCCCccEEEE-CCCc
Confidence 53 5778887 5553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.079 Score=48.97 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=54.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-H
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-M 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~ 133 (181)
+..+|+|+|+ |.+|+.+++.+...|.+++. .+||.+... .-.|..+. +++++.+ .+|++|+++....+.+.. .
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence 3568999999 99999999999999998554 456554221 11455444 3566665 789999999766554433 4
Q ss_pred HHHHcCC
Q 030220 134 EAMEAEL 140 (181)
Q Consensus 134 eaie~GI 140 (181)
++++.|-
T Consensus 277 ~~mk~Gg 283 (413)
T cd00401 277 EQMKDGA 283 (413)
T ss_pred hcCCCCc
Confidence 4555544
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=46.76 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHH-HhCCeEeeecCCCCCCe-E----EcC------------ccccccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~-~~g~~IVagVdP~~~G~-e----i~G------------vPVy~sl~e~~~~~~~DVa 119 (181)
..+|.|+|+ |+.|+.+++.+. ..|++|+ ++||..... + ..| +..+.+++|+++ +.|++
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDiV 240 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADVI 240 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCEE
Confidence 357999999 999999999985 6899987 566543210 0 011 122358999998 79999
Q ss_pred EEeeChH-HHHHHHHHHH-Hc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 120 VIYVPPP-FAAAAIMEAM-EA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 120 IdfVPp~-~a~~~~~eai-e~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++.+|-. .....+.+.. +. +- ..+|+++=|=-+ |...|.++.+.
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lV-De~AL~~AL~s 288 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVI-DEVALVEHLKA 288 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCcccc-CHHHHHHHHHh
Confidence 9988843 2222332222 11 22 235664444333 44455555433
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.17 Score=45.82 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC------e------E---------------E-cC--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------T------E---------------H-LG--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G------~------e---------------i-~G--vPVy~-- 105 (181)
+.+|+|+|+ |-.|..+++.+...|+.-+..+|+.... + + + .+ +..++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 467999999 9999999999999887644455544221 0 0 0 11 22222
Q ss_pred ----cHHHHhhccCCcEEEEeeChHHHHHH-HHHHHHcCCCEEEEeC
Q 030220 106 ----SVAEAKAETKANASVIYVPPPFAAAA-IMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp~~a~~~-~~eaie~GIk~IV~iT 147 (181)
++.++++ ++|++|+++-.-.+... -+.|.+.|++.|.+..
T Consensus 120 i~~~~~~~~~~--~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 120 LTAENAVELLN--GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred cCHHHHHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 2344555 68999988876655544 4557788888886643
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.1 Score=50.20 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=71.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe------------------EEcCccccccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------------------EHLGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~------------------ei~GvPVy~sl~e~~~~~~~DVa 119 (181)
.++|+|-|++|..|+..++.+.+++.+-+-.++.+...+ .+.++.=++.+++++++++||++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V 329 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV 329 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence 467999999999999999999998777332333222111 11233334468888888889987
Q ss_pred EEee-----------ChH-------HHHHHHHHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHh
Q 030220 120 VIYV-----------PPP-------FAAAAIMEAMEAELDLVVCITE----------GIPQHDMVINFTRV 162 (181)
Q Consensus 120 IdfV-----------Pp~-------~a~~~~~eaie~GIk~IV~iTt----------G~~~ed~~~l~~~a 162 (181)
.=.- |-+ .+..+++.|+++|++.+|+++| |.+..-.+++..++
T Consensus 330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~ 400 (588)
T COG1086 330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAA 400 (588)
T ss_pred EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHHHHHHHHHHHHH
Confidence 6432 222 2456789999999999999886 55555555555555
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=50.69 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-c-----cHHHHhhccCCcEEEEeeChH------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-N-----SVAEAKAETKANASVIYVPPP------ 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-~-----sl~e~~~~~~~DVaIdfVPp~------ 126 (181)
+||+|.|++|..|+.+++.+.+.|.+|++..+..... ...++..+ . .+.+++. ++|+++-+.+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~ 77 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-LDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGG 77 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-ccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhh
Confidence 3799999999999999999999999988754311100 00112111 1 2444444 789999988632
Q ss_pred ----HHHHHHHHHHHcCCCEEEEeCCC
Q 030220 127 ----FAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 127 ----~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.+..+++.|.++|++.|.. ++.
T Consensus 78 vNv~Gt~nLleAA~~~GvRiV~~-SS~ 103 (699)
T PRK12320 78 VGITGLAHVANAAARAGARLLFV-SQA 103 (699)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEE-ECC
Confidence 2556778888899975543 543
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.22 Score=49.99 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=60.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC----CeEE--cCccccccHHHHhhccCCcEEEEeeCh-------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----GTEH--LGLPVFNSVAEAKAETKANASVIYVPP------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~----G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp------- 125 (181)
+||+|.|++|.+|+.+++.+.+.|.++++....... +-+. .++.=..+++++++ ++|++|.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v 78 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI 78 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence 379999999999999999999999998865432110 0000 11111224555555 79999988643
Q ss_pred --HHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 126 --PFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 126 --~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.....+++.|.++|++.+|.+++.-
T Consensus 79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 79 NIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2355667778888998888767653
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.69 Score=37.97 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|-.|+.+++.+.+.|.+++....... ...+++.+. ++ -+..|...++.+.++++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----------~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----------NEAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----------HHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 367999999999999999999999999774322111 011222111 22 24567788889999888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~li~-~ag~ 89 (255)
T PRK06463 75 KEFGRVDVLVN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 65 5777776 5554
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.12 Score=48.26 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=62.9
Q ss_pred ceEEEEccCCCCcchhhHHHHH---hCCeEeeecCCCCCCe----------------E----------EcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGT----------------E----------HLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~---~g~~IVagVdP~~~G~----------------e----------i~G--vPVy~-- 105 (181)
.||.|-|+ |+.|+.+.+.+.+ .+++||+..|+..... + +.| +.|+.
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~ 154 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNR 154 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcC
Confidence 79999999 9999999998664 3699998544321110 0 112 34443
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.+++. .+.++|+++.++......+.+...+++|.+.|++ |
T Consensus 155 dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i-S 196 (442)
T PLN02237 155 DPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-T 196 (442)
T ss_pred CchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE-C
Confidence 233442 2358999999999999999999999999999988 6
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.49 Score=39.27 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++.. +.+.. .++++.++. ++. +..|...++...+.++.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~-~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIG-DLDEA-----------LAKETAAELGLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE-ECCHH-----------HHHHHHHHhccceEEEccCCCHHHHHHHHHHHH
Confidence 469999999999999999999999986642 32210 111111110 122 3457788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 74 ~~~~~id~li~-~ag~ 88 (273)
T PRK07825 74 ADLGPIDVLVN-NAGV 88 (273)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 64 6777777 6665
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.74 Score=36.92 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.++|+|.|++|.+|+.+++.+.+.|.+++. ++..... . .+ . + =+..|...++.+.+.++++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~-~~r~~~~-~---~~---------~--~-~~~~D~~~~~~~~~~~~~~~~ 65 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIG-IARSAID-D---FP---------G--E-LFACDLADIEQTAATLAQINE 65 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEE-EeCCccc-c---cC---------c--e-EEEeeCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999998774 3332211 0 11 0 1 134677778888888887776
Q ss_pred c-CCCEEEEeCCCC
Q 030220 138 A-ELDLVVCITEGI 150 (181)
Q Consensus 138 ~-GIk~IV~iTtG~ 150 (181)
. ++..++. ..|.
T Consensus 66 ~~~~d~vi~-~ag~ 78 (234)
T PRK07577 66 IHPVDAIVN-NVGI 78 (234)
T ss_pred hCCCcEEEE-CCCC
Confidence 5 5777776 5554
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.064 Score=51.29 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a~ 129 (181)
+.+|+|+|+ |++|+.+.+.+.+.|.+++. ..||+.... .-.|.++|. | =.+++++ .++|+.|.+++.+...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 456999999 99999999999998888664 355554220 114677665 2 2333332 3789999999987666
Q ss_pred -HHHHHHHHcC
Q 030220 130 -AAIMEAMEAE 139 (181)
Q Consensus 130 -~~~~eaie~G 139 (181)
.++..+-+..
T Consensus 479 ~~i~~~~r~~~ 489 (601)
T PRK03659 479 MKIVELCQQHF 489 (601)
T ss_pred HHHHHHHHHHC
Confidence 4445555544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.38 Score=39.16 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE-EEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA-SVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV-aIdfVPp~~a~~~~~eai 136 (181)
.++|+|.|++|.+|+.+++.+.+.|.+++.. +..... .. .+..++.+......+++ ..|...++.+.++++.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~-~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAA-DIDKEA--LN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE-ecChHH--HH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999997743 332211 10 01111111111112333 557888888888888776
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. ++..+|+.+
T Consensus 79 ~~~~~id~vi~~A 91 (256)
T PRK09186 79 EKYGKIDGAVNCA 91 (256)
T ss_pred HHcCCccEEEECC
Confidence 53 477777743
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.33 Score=39.94 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++++... ...+.+.....++ -+.+|....+.+.+.++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~-~~r~~~~--------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGA-YDINEAG--------LAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEE-EeCCHHH--------HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998988763 4433211 0011111111122 235677888888888888765
Q ss_pred c---CCCEEEEeCCCC
Q 030220 138 A---ELDLVVCITEGI 150 (181)
Q Consensus 138 ~---GIk~IV~iTtG~ 150 (181)
. .+..+|. ..|.
T Consensus 73 ~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 73 ATGGRLDVLFN-NAGI 87 (260)
T ss_pred HcCCCCCEEEE-CCCC
Confidence 3 6788887 5554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.087 Score=47.37 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=56.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCCe--EEcCccccc-------cHHHH-hhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGGT--EHLGLPVFN-------SVAEA-KAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G~--ei~GvPVy~-------sl~e~-~~~~~~DVaIdfVPp~ 126 (181)
++|+|+|+ |++|+.+++.+.+.|.+++ .+++ ..... +..|++++. .++++ ++ ++|.+|.+++..
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAE--DADLLIAVTDSD 76 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCC--cCCEEEEecCCh
Confidence 47999999 9999999999998898877 4443 32110 112444442 13333 22 799999999876
Q ss_pred HHHHH-HHHHHHc-CCCEEEEeCCC
Q 030220 127 FAAAA-IMEAMEA-ELDLVVCITEG 149 (181)
Q Consensus 127 ~a~~~-~~eaie~-GIk~IV~iTtG 149 (181)
..... +..+-+. +.+.+++-+..
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 66554 3444554 77777775544
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.13 Score=47.07 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=27.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
..+|.||++|.....+....++++|++.|-+
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTa 139 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCIVLA 139 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeEEcC
Confidence 4699999999999999999999999998844
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.21 Score=44.11 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=62.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-----------ccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-----------NSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-----------~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|+|+|+ |-+|.++++++...|..-+..+|+.....+-.+--.| ....+.+++.++++-|......
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 9999999999999999877677877644221111111 1123334455677776666543
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
... +.+ .+...||+ |+. +.+...++.++|++-.+.
T Consensus 98 ~~~----~~l-~~fdvVV~-~~~-~~~~~~~in~~c~~~~ip 132 (286)
T cd01491 98 LTT----DEL-LKFQVVVL-TDA-SLEDQLKINEFCHSPGIK 132 (286)
T ss_pred CCH----HHH-hcCCEEEE-ecC-CHHHHHHHHHHHHHcCCE
Confidence 211 122 34455555 443 677777777777664443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.54 Score=39.02 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++..... .. ++ -+..|...++.+.++++++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~-~~r~~~~--~~---------------~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVIN-FDIKEPS--YN---------------DVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEE-EeCCccc--cC---------------ceEEEEccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999774 3332211 00 11 234566778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 69 ~~~~id~li~-~Ag~ 82 (258)
T PRK06398 69 KYGRIDILVN-NAGI 82 (258)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 5788887 5554
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.48 Score=38.63 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|-+|+..++.+.+.|.+++..+.+.... . -...++.... .++. +-.|...++...+.+++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQA--A-----DETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--H-----HHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 5799999999999999999999999887544443211 1 0111222110 0121 3356677777777777766
Q ss_pred Hc--------CCCEEEEeCCCC
Q 030220 137 EA--------ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--------GIk~IV~iTtG~ 150 (181)
+. ++..+++ ..|.
T Consensus 80 ~~~~~~~~~~~id~vi~-~ag~ 100 (254)
T PRK12746 80 NELQIRVGTSEIDILVN-NAGI 100 (254)
T ss_pred HHhccccCCCCccEEEE-CCCC
Confidence 52 5888887 5554
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.26 Score=42.54 Aligned_cols=79 Identities=15% Similarity=0.012 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC-------------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------- 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP------------- 124 (181)
.+||+|.|++|-.|+.+++.+.+.|.+++.. ... +.. ...+...++..++|++|-+.-
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~-~~~-----~~~---~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~ 79 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG-SGR-----LEN---RASLEADIDAVKPTHVFNAAGVTGRPNVDWCESH 79 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe-cCc-----cCC---HHHHHHHHHhcCCCEEEECCcccCCCCchhhhhC
Confidence 4789999999999999999999989887632 111 111 112444444447888773321
Q ss_pred --------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 --------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 --------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-.....+++.|.++|++.++.
T Consensus 80 p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 80 KVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 113455777888889997665
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.2 Score=44.10 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
...|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+ .+++ ++...+ +..|...++.+.+++++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl-~~R~~~~--l~--~~---~~~~-~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVL-AARDEEA--LQ--AV---AEEC-RALGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHH-HhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 356899999999999999999999999773 4433211 10 11 1222 112233 34688889999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 78 ~~~~~g~iD~lVn-nAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVN-NVGV 94 (330)
T ss_pred HHHhcCCCCEEEE-CCCc
Confidence 8775 5788887 6664
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.17 Score=42.86 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccc--cHHHHhhc-------cCCcEEEEee----C
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN--SVAEAKAE-------TKANASVIYV----P 124 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~--sl~e~~~~-------~~~DVaIdfV----P 124 (181)
|+|.|++|-.|+.+++.+.+.|.++++.++....+.. ...+.+-+ +.+++.++ .++|++|-+. +
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~ 81 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSST 81 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecCC
Confidence 7899999999999999999989887777664322211 11111111 22222221 1689888753 1
Q ss_pred ------------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 ------------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 ------------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-..+..+++.|.++|++.|..
T Consensus 82 ~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~ 114 (308)
T PRK11150 82 TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (308)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 112445778888899975444
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.21 Score=44.87 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-+|..+.+.+...|+.-+..+|+..
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478999999 99999999999998887555566544
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.073 Score=51.18 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPF-A 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~-a 128 (181)
..+|+|+|+ |+.|+.+.+.+.+.|.+++. .-||..... .-.|.+||. | =.+++++ .++|+.|.+++.+. .
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 467999999 99999999999998888664 355554220 114777776 2 2223322 27899999988754 4
Q ss_pred HHHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHH
Q 030220 129 AAAIMEAMEAELDL-VVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~~~~eaie~GIk~-IV~iTtG~~~ed~~~l~~~ 161 (181)
..++..+-+...+. |++-+ -+.++..+++++
T Consensus 479 ~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 45555555554332 33323 334555555554
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.3 Score=40.52 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=51.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccc----------cHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN----------SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~----------sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |-||+.+++.+...|..-+-.+|+........+--.|. .+++.+.+.++++-+...+...
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 367999999 99999999999999986333566653221111101111 1333344445555555544433
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCH
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ 152 (181)
-.+.+++++ .+...||.-++.+..
T Consensus 100 ~~~~~~~~~-~~~DlVi~a~Dn~~~ 123 (200)
T TIGR02354 100 TEENIDKFF-KDADIVCEAFDNAEA 123 (200)
T ss_pred CHhHHHHHh-cCCCEEEECCCCHHH
Confidence 334444443 356666663344333
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.3 Score=42.72 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
.+.+|+|+|+ |-.|..+++.+...|..-+-.+|+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3478999999 9999999999999886534345544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.12 Score=39.47 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=58.6
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCC------CC--------eEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GG--------TEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~------~G--------~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
|+|+|+ |.+|....-.+.+.|.++.....+.. .| .+....+.+.... .....++|+++++|...
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAP-SADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSH-GHHHSTESEEEE-SSGG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcc-hhccCCCcEEEEEeccc
Confidence 689999 99999998888887877664322220 01 1111112221112 11223799999999999
Q ss_pred HHHHHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030220 127 FAAAAIMEAMEAELD--LVVCITEGIPQHD 154 (181)
Q Consensus 127 ~a~~~~~eaie~GIk--~IV~iTtG~~~ed 154 (181)
...++++.+...--+ .|+.+--|+..++
T Consensus 79 ~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 79 QLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred chHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 999999986655444 5777789988664
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.47 Score=38.34 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. ...+.+.+ ..++ -+..|...++.+.+.++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r~~~~--~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVV-VTDRNEEA--AE--RVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCHHH--HH--HHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999966 44433211 10 01111111 0111 23456677888888888775
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 77 ~~~~~~d~vi~-~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVN-NAGT 91 (251)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 44 4666776 6565
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.61 Score=39.11 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=55.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcc--ccccHHHHhhc-cCC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP--VFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvP--Vy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~ 133 (181)
+++++|.|++|-+|+.+++.+.+.|.+++.. +..... ...++ +....+++... .++ -+..|...++.+.+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~-~r~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIA-AKTAEP--HPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eccccc--ccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3579999999999999999999999997743 332211 01111 11111222111 122 23467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+++ ..|+
T Consensus 83 ~~~~~~g~id~li~-~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVN-NASA 100 (273)
T ss_pred HHHHHhCCCCEEEE-CCCC
Confidence 87765 6888887 6665
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.13 Score=44.55 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred CceEEEEccCCCCcc-hhhHHHHH-h--CCeEeeecCCCCCCeE---EcCcccccc-HHHHh---hccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIE-Y--GTKMVGGVTPKKGGTE---HLGLPVFNS-VAEAK---AETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~-~--g~~IVagVdP~~~G~e---i~GvPVy~s-l~e~~---~~~~~DVaIdfVPp~ 126 (181)
..||+|+|- |+.|. ..+|.+.. . .+...-|+||+..|-- -.|+|-.+. ++-++ +..++|.+.+.+.+.
T Consensus 4 k~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~ 82 (310)
T COG4569 4 KRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAG 82 (310)
T ss_pred cceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccccc
Confidence 468999997 99999 56666555 2 3445558999988721 157777664 44443 323567888999999
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 030220 127 FAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV 144 (181)
+..+++-...|.||+.|=
T Consensus 83 ~h~~~a~~~ae~gi~~id 100 (310)
T COG4569 83 AHVKNAAALAEAGIRLID 100 (310)
T ss_pred hhhcchHhHHhcCCceee
Confidence 999999999999999873
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.1 Score=47.19 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccc-----cccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-----FNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPV-----y~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
.+|.|+|. |.+|...++.+.+.|.++. +.|..... ....+. ....+.+++ ++|+.|...+...-.+.++
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~~~--~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSLEA--LQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQ 77 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCccc--cchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHH
Confidence 57999999 9999998888888898755 66754422 111111 122333333 6898888876666678899
Q ss_pred HHHHcCCC
Q 030220 134 EAMEAELD 141 (181)
Q Consensus 134 eaie~GIk 141 (181)
+|.++|++
T Consensus 78 ~A~~~g~~ 85 (418)
T PRK00683 78 AAIASHIP 85 (418)
T ss_pred HHHHCCCc
Confidence 99999987
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.52 Score=40.24 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
...+|+|.|++|-.|+.+++.+.+.|.+|++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 3468999999999999999999999999886543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.49 Score=38.05 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=52.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|..|+.+++.+.+.|.++++ ++.+... .. .. .+++.+..+++ +..|...++...+.++++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAI-TARDQKE--LE--EA---AAELNNKGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEE-eeCCHHH--HH--HH---HHHHhccCcEEEEEccCCCHHHHHHHHHHHH
Confidence 367999999999999999999988999664 3432211 00 11 11111111233 3346777888888888776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 78 ~~~~~~d~vi~-~ag 91 (237)
T PRK07326 78 AAFGGLDVLIA-NAG 91 (237)
T ss_pred HHcCCCCEEEE-CCC
Confidence 64 6888887 444
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.35 Score=39.37 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.|+|.|++|-+|+.+++.+.+.|.+++. ++..... . .....+++.+ ..+++ +-.|+..++...++++++.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~-~~r~~~~-~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAI-NDRPDDE-E-----LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQ 75 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEE-EecCchh-H-----HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45888899999999999999999998774 3422111 0 0011111111 11222 3467888888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..||. ..|+
T Consensus 76 ~~~~~id~vi~-~ag~ 90 (256)
T PRK12745 76 AAWGRIDCLVN-NAGV 90 (256)
T ss_pred HhcCCCCEEEE-CCcc
Confidence 65 5777877 6665
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.1 Score=47.19 Aligned_cols=87 Identities=11% Similarity=-0.037 Sum_probs=60.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC------------------eE---------EcC---ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG------------------TE---------HLG---LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G------------------~e---------i~G---vPVy~-- 105 (181)
.||.|-|+ |++|+.+.+.+.+. ++++|+..||...- .+ ++| ++++.
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 58999999 99999999987764 79999876643110 01 133 44554
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEe
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCI 146 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~i 146 (181)
+++++. +++++|+++.++....-.+-+..-+++|.+.+++.
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviis 123 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVA 123 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence 355543 33589999999988766666666777788877763
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.2 Score=47.79 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=54.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC------------
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------ 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP------------ 124 (181)
+.+||+|.|++|-+|+.+.+.+.+.|.++.... + . +.=...+.+.+++.++|++|-+.-
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~-----~-~---l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~ 449 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGK-----G-R---LEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES 449 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeec-----c-c---cccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence 557899999999999999999988888873121 1 0 111123555555567888774431
Q ss_pred ---------hHHHHHHHHHHHHcCCCEEEE
Q 030220 125 ---------PPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 125 ---------p~~a~~~~~eaie~GIk~IV~ 145 (181)
-..+..+++.|.+.|++.++.
T Consensus 450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 450 HKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 123556788888999987665
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.11 Score=42.85 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=39.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++|+|+|+ |++|+...+.+.+.|.+|+ ..|.+... .+ ..|....++ +++.. .++|+.+-+
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~-~~~Dv~vp~ 92 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYS-VDADVFAPC 92 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhcc-ccCCEEEec
Confidence 67999999 9999999999999999988 55543211 01 113333333 44443 267887744
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.72 Score=37.35 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=55.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~e 134 (181)
+++.+++|.|++|.+|+.+++.+.+.|.+|+. ++.... +.. .+...+++.. .+++ +..|.+.++.....+++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r~~~--~~~--~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLAL-VARSQD--ALE--ALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHH--HHH--HHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHH
Confidence 34567999999999999999999999998664 443321 111 0111111110 1222 34577788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 77 ~~~~~~~id~lv~-~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLIN-NAGM 93 (241)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7764 5777877 6665
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.14 Score=41.01 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=55.3
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCc---cccc-cHHHHhhccCCcEEEEeeChHHHH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL---PVFN-SVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~Gv---PVy~-sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+-=+..+|+|+|+ |+.|..-++.+++.|.+++ .|+|.... ++..+ .+-. .+++.. -.+.|+++..+..+...
T Consensus 9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~~~-~l~~l~~i~~~~~~~~~~d-l~~a~lViaaT~d~e~N 84 (157)
T PRK06719 9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEICK-EMKELPYITWKQKTFSNDD-IKDAHLIYAATNQHAVN 84 (157)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCccCH-HHHhccCcEEEecccChhc-CCCceEEEECCCCHHHH
Confidence 3334578999999 9999999999999998876 56777543 22222 1111 222221 12689999999888888
Q ss_pred HHHHHHHHcCC
Q 030220 130 AAIMEAMEAEL 140 (181)
Q Consensus 130 ~~~~eaie~GI 140 (181)
..+..+.+.+.
T Consensus 85 ~~i~~~a~~~~ 95 (157)
T PRK06719 85 MMVKQAAHDFQ 95 (157)
T ss_pred HHHHHHHHHCC
Confidence 77776665553
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.73 Score=37.39 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .....+.+.-. ++ -+-.|...++.+.+.+++..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~-~~r~~~~------~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVG-AGRSEPS------ETQQQVEALGR--RFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCchHH------HHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998774 4432200 11111111100 12 23456777888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 76 ~~~~~~d~li~-~ag~ 90 (248)
T TIGR01832 76 EEFGHIDILVN-NAGI 90 (248)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 54 4777777 5554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.23 Score=39.91 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++..++..... .. ...+.+.+ ...++. +..|...++.+.+.++++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~--~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEA--AQ--ELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHH--HH--HHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998899977543433211 00 01111111 011232 33567778888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..|+. ..|.
T Consensus 80 ~~~~id~vi~-~ag~ 93 (247)
T PRK05565 80 KFGKIDILVN-NAGI 93 (247)
T ss_pred HhCCCCEEEE-CCCc
Confidence 4 6888887 5554
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.25 Score=42.61 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=61.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-------ccHHHHhhccCCcEEEEeeChHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NSVAEAKAETKANASVIYVPPPFA-- 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~~a-- 128 (181)
+.+|+|.|.| ..|+.+++.+.+.|.+++.-|.-..+..+..++++. ..+++++.+++++++||.++|-+.
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 4579999984 478899988888898866544322211222345554 258888888899999999999664
Q ss_pred -HHHHHHHHHcCCCEEEE
Q 030220 129 -AAAIMEAMEAELDLVVC 145 (181)
Q Consensus 129 -~~~~~eaie~GIk~IV~ 145 (181)
+.+.+-|-+.||+-+=-
T Consensus 81 s~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 81 SANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHHHhCCcEEEE
Confidence 45667777889988643
|
|
| >COG1810 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.75 Score=39.57 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEeeecCC-CCCCeEEcCccccc-cHHHHhhc-cCCcEEEEe-eChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTP-KKGGTEHLGLPVFN-SVAEAKAE-TKANASVIY-VPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP-~~~G~ei~GvPVy~-sl~e~~~~-~~~DVaIdf-VPp~~a~~~ 131 (181)
++||+|+.- |..|...++++...+ -++|+...+ .. +|.|= ..++++.. -++|++|-+ .+|+.....
T Consensus 1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~-------~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L 72 (224)
T COG1810 1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPEE-------LPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLAL 72 (224)
T ss_pred CcEEEEEee-ccchHHHHHhHhhhccccceEEEEecccc-------ccchhhCHHHhcCCCCCCCEEEEeccCccHHHHH
Confidence 478999988 999999999888755 447765554 22 23333 34555543 378999988 999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+.+.+.|++.+++ ..+=+.--..+|++.+.+
T Consensus 73 ~e~~~~~~~~alIv-p~~~~~g~rkqL~~~~~~ 104 (224)
T COG1810 73 PEKAAEGGVKALIV-PAEPPEGLRKQLKEFCEE 104 (224)
T ss_pred HHHHHhCCccEEEE-ecCCChhHHHHHHHHhhh
Confidence 99999999999987 666666666777776663
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=1 Score=38.50 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=55.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--C-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++....... ...+++..++.. + -+..|...++.+.+.++++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAI-SYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEE-ecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 57999999999999999999999999774 332211100 112233222211 2 2456788889999998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 123 ~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 123 HKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 764 5777777 4443
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.24 Score=39.51 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=56.4
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------EEcCccccc--cHHHHhhccCCcEEEEeeChH----
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPVFN--SVAEAKAETKANASVIYVPPP---- 126 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~---- 126 (181)
|+|.|+||-.|+.+++.+++.|.+++.......... ++.-..+.+ .++++++..++|+++.+.-..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 80 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPE 80 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccccccc
Confidence 789999999999999999999999774433222110 011112222 477777766789999886541
Q ss_pred --------------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 --------------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 --------------~a~~~~~eaie~GIk~IV~iT 147 (181)
....+++.|.+++++.++.++
T Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~s 115 (236)
T PF01370_consen 81 SFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLS 115 (236)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 123456667788996655544
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.58 Score=40.34 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=27.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+++|+|.|++|-+|+.+++.+.+.|.++++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 4679999999999999999999999998864
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.053 Score=51.01 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe------------EEcC-------------ccccccHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT------------EHLG-------------LPVFNSVAEA 110 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~------------ei~G-------------vPVy~sl~e~ 110 (181)
+-.+|.|+|+ |.||+-++..+...|++++. .+++..... .-.| +....+++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 4467999999 99999999999888999663 344432111 0012 4555677664
Q ss_pred hhccCCcEEEEeeChHHHHHHHH-HHHHcCCC--EEEE-eCCCCCHHHHHHHHHHh-hhhchhchh
Q 030220 111 KAETKANASVIYVPPPFAAAAIM-EAMEAELD--LVVC-ITEGIPQHDMVINFTRV-NILLVAFLN 171 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~~~-eaie~GIk--~IV~-iTtG~~~ed~~~l~~~a-k~ipv~~~~ 171 (181)
. ++|++|-.+|.+...+..- .-++.-.+ .|+. -|+.++..++..-.... +.+.+-|.|
T Consensus 85 -~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~ 147 (507)
T PRK08268 85 -A--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFN 147 (507)
T ss_pred -C--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecC
Confidence 4 7999999999877654443 22443322 3442 38888887544322211 125555555
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.87 Score=36.87 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=51.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++...+... . .. ..+.+... .++. +-.|+..++...+.++++.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~-~-~~------~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE-D-AA------EALADELG-DRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH-H-HH------HHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999875333221 1 00 01111111 1222 33567778888888887765
Q ss_pred c---CCCEEEEeCCCC
Q 030220 138 A---ELDLVVCITEGI 150 (181)
Q Consensus 138 ~---GIk~IV~iTtG~ 150 (181)
. ++..++. ..|+
T Consensus 77 ~~g~~id~li~-~ag~ 91 (253)
T PRK08642 77 HFGKPITTVVN-NALA 91 (253)
T ss_pred HhCCCCeEEEE-CCCc
Confidence 4 2777777 4443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.13 Score=48.35 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC--CCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~--~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a 128 (181)
+.+|+|+|+ |+.|+.+++.+.+.|.+++ .+|++. ..+ +-.|++++. | =+++.++ .++|..+..++.+..
T Consensus 417 ~~hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 417 CNHALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCCEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 356999999 9999999999999888866 455433 110 013555544 2 1222221 278988888877654
Q ss_pred HH-HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 129 AA-AIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~-~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.. .+..+.+. +...|+.-++ ..++..+++++
T Consensus 495 ~~~iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~ 527 (558)
T PRK10669 495 AGEIVASAREKRPDIEIIARAH--YDDEVAYITER 527 (558)
T ss_pred HHHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHc
Confidence 43 33333332 3344554343 34555666554
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.11 Score=44.14 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=29.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
..||+|+|+ |+.|+..++.+.+.|.++|+..|.
T Consensus 31 ~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence 488999999 999999999999999999976553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.57 Score=37.95 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... . -...++.....+++ +-.|...++.+.+++++..
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVV-ADRDAEA--A-----ERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEE-ecCCHHH--H-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999998988764 3322211 0 00111111111222 3457788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 77 ~~~~~id~vi~-~ag~ 91 (252)
T PRK06138 77 ARWGRLDVLVN-NAGF 91 (252)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 65 6777777 5553
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.56 Score=40.66 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=51.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE---cCccccc-c-------HHHHhhccCCcEEEEe--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LGLPVFN-S-------VAEAKAETKANASVIY-- 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei---~GvPVy~-s-------l~e~~~~~~~DVaIdf-- 122 (181)
+++|+|.|++|-.|+.+++.+.+. |.+|++. +..... ... .+++++. + ++++.+ ++|++|-+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~d~ViH~aa 77 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KCDVILPLVA 77 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CCCEEEECcc
Confidence 357999999999999999999886 6888854 321100 001 1233332 3 233344 79998854
Q ss_pred --eChH--------------HHHHHHHHHHHcCCCEEEE
Q 030220 123 --VPPP--------------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 123 --VPp~--------------~a~~~~~eaie~GIk~IV~ 145 (181)
.|+. ....+++.|.+.|.+.|..
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~ 116 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFP 116 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3321 2345677777888555544
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.062 Score=50.60 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe---E--------E-cC-------------ccccccHHHHh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---E--------H-LG-------------LPVFNSVAEAK 111 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---e--------i-~G-------------vPVy~sl~e~~ 111 (181)
-.+|.|+|+ |.||+-+...+...|++++. .+++..... . + .| +....+++++
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 467999999 99999999999999999653 344332110 0 0 12 3345577654
Q ss_pred hccCCcEEEEeeChHHH-HHHHHHHHHcCCC--EEEE-eCCCCCHHHHHH-HHHHhhhhchhchh--hhhhh
Q 030220 112 AETKANASVIYVPPPFA-AAAIMEAMEAELD--LVVC-ITEGIPQHDMVI-NFTRVNILLVAFLN--FIMKL 176 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~~a-~~~~~eaie~GIk--~IV~-iTtG~~~ed~~~-l~~~ak~ipv~~~~--~~~~~ 176 (181)
. ++|++|-.+|.+.. .+.+..-++.-.+ .|++ -|..++..++.. +..-.+.+.+-|.| .+|+|
T Consensus 83 ~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~L 152 (503)
T TIGR02279 83 A--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMAL 152 (503)
T ss_pred C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCce
Confidence 4 79999999997543 3333333443333 3442 388888876443 33344566666666 44554
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.2 Score=47.28 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-----CCeEeeecCC-CCCCe---------------------E---------EcC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTP-KKGGT---------------------E---------HLG 100 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-----g~~IVagVdP-~~~G~---------------------e---------i~G 100 (181)
+..||+|-|+ |++|+.+.+.+.+. ++++||.++. +..+. + ++|
T Consensus 126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing 204 (477)
T PRK08289 126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANG 204 (477)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECC
Confidence 3578999999 99999999987753 6889987531 11110 0 122
Q ss_pred --ccccc--cHHHHh-hccCCc--EEEEeeChHHHHHHHHHHHH-cCCCEEEE
Q 030220 101 --LPVFN--SVAEAK-AETKAN--ASVIYVPPPFAAAAIMEAME-AELDLVVC 145 (181)
Q Consensus 101 --vPVy~--sl~e~~-~~~~~D--VaIdfVPp~~a~~~~~eaie-~GIk~IV~ 145 (181)
++++. +.++++ .+.++| ++|+++-.-.-.+-+..=++ +|.+.|++
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVii 257 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLL 257 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEE
Confidence 34444 466664 345789 99999977777776777777 79998886
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.56 Score=37.44 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=51.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+++|+|.|++|..|+.+++.+.+.|.+++ .++..... .. .+.+.+++.-. ++. +..|...++...+++++..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r~~~~--~~--~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVV-IYDSNEEA--AE--ALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCChhH--HH--HHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999854 55543311 10 11111221100 122 1246777777777777665
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. .+..|+..+
T Consensus 78 ~~~~~id~vi~~a 90 (246)
T PRK05653 78 EAFGALDILVNNA 90 (246)
T ss_pred HHhCCCCEEEECC
Confidence 43 577777744
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.32 Score=39.66 Aligned_cols=85 Identities=19% Similarity=0.107 Sum_probs=53.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~e 134 (181)
+.++|+|.|++|-+|+.+++.+.+.|.+++ .++..... .. .. .+++... .++ -+..|...++....++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAARTAER--LD--EV---AAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 346799999999999999999999999876 34432211 10 01 1222110 011 255677778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..++. ..|.
T Consensus 76 ~~~~~g~~d~vi~-~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVN-NAFR 92 (258)
T ss_pred HHHHcCCccEEEE-CCcc
Confidence 7655 5777877 4454
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.2 Score=47.25 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=60.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI-ME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~-~e 134 (181)
..+|+|+|+ |++|+.+.+.+...|++|+. ..||....+ ...|+.+. +++++++ .+|+++..+... .++ .+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~--~ADIVI~atGt~---~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVE--TADIFVTATGNK---DIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHh--cCCEEEECCCcc---cccCHH
Confidence 467999999 99999999999999999653 456654311 12355443 6888887 799999987533 333 24
Q ss_pred HHHc-CCCEEEEeCCCCCHHH-HHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHD-MVINFT 160 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed-~~~l~~ 160 (181)
.++. +-..+++-+..+.+|. +..|+.
T Consensus 327 ~~~~MKpGAiLINvGr~d~Ei~i~aL~~ 354 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHFDNEIQVAELEA 354 (476)
T ss_pred HHhccCCCcEEEEcCCCchHHhHHHHHh
Confidence 4443 4444544465554433 233443
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.53 Score=39.01 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.... .. ..+.+.++. .+++ +-+|...++...+++++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~-~~r~~~--~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLI-AARTES--QL------DEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH--HH------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 456999999999999999999999999774 343321 01 011111111 1223 23677888888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..++. ..|
T Consensus 81 ~~~~~~~id~vi~-~Ag 96 (263)
T PRK07814 81 AVEAFGRLDIVVN-NVG 96 (263)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 8775 7888888 445
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.65 Score=38.15 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ 133 (181)
+.+++|.|++|-.|+.+++.+.+.|.+++.. .++.... + .. ..+.+.++.. +++ +-.|...++.+.+.++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~-~--~~---~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASK-A--DA---EETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccch-H--HH---HHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 3579999999999999999999999985533 2222211 1 00 1111111111 222 3467888888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+++ ..|+
T Consensus 82 ~~~~~~~~id~li~-~ag~ 99 (257)
T PRK12744 82 DAKAAFGRPDIAIN-TVGK 99 (257)
T ss_pred HHHHhhCCCCEEEE-CCcc
Confidence 88764 5777777 6675
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.58 Score=40.49 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=26.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+|+|.|++|-.|+.+++.+.+.|.+|++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999998864
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.64 Score=37.68 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+|+|.|++|.+|+.+++.+.+.|.+++. ++.+... .. .....++.. ..++. +..|+..++.+.++++++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~-~~r~~~~--~~--~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVI-ADLNDEA--AA--AAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEE-EeCCHHH--HH--HHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999999998774 3433211 00 111111110 01222 4457788888888888776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..|+. ..|
T Consensus 77 ~~~~~~d~vi~-~a~ 90 (258)
T PRK12429 77 ETFGGVDILVN-NAG 90 (258)
T ss_pred HHcCCCCEEEE-CCC
Confidence 65 6787877 444
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.36 Score=40.89 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=47.7
Q ss_pred CccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH--cCCCEEEEeCCCCCHHHHHHHHH
Q 030220 100 GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME--AELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 100 GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie--~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
|+.++++..++.+ ++|+++++|+|....+++++.-. .+=+.||-++.|++.+++.++..
T Consensus 30 g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~ 90 (245)
T TIGR00112 30 GIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLG 90 (245)
T ss_pred CcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcC
Confidence 5556677778776 78999999999999999877753 23368899999999999988764
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.12 Score=47.57 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
-.+.+..+|.|+|+ |+||+..++.+.+.|-.+++---+.... .+-.|.--|+.+.+..++ .+|+++.+|......++
T Consensus 47 ~~~k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsieki 124 (480)
T KOG2380|consen 47 EQWKATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKI 124 (480)
T ss_pred hhcccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHH
Confidence 34566788999999 9999999999999888877542232211 122467778888887764 69999999998888777
Q ss_pred HHHHH
Q 030220 132 IMEAM 136 (181)
Q Consensus 132 ~~eai 136 (181)
+...-
T Consensus 125 latyp 129 (480)
T KOG2380|consen 125 LATYP 129 (480)
T ss_pred HHhcC
Confidence 76543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.89 Score=37.46 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+.++|.|++|-+|+.+++.+.+.|.+++.. .++... .+ . ++ -+..|...++.+.++++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~----~~-----------~--~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG----QH-----------E--NYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc----cc-----------C--ceEEEEccCCCHHHHHHHHHHH
Confidence 4568999999999999999999999997742 222221 00 0 11 1335667777888888777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 72 ~~~~g~id~li~-~Ag~ 87 (266)
T PRK06171 72 IEKFGRIDGLVN-NAGI 87 (266)
T ss_pred HHHcCCCCEEEE-CCcc
Confidence 654 5777776 5553
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.071 Score=50.58 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=50.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----EcCc--c--ccccHHHHhhccCCcEEEEeeC---h
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGL--P--VFNSVAEAKAETKANASVIYVP---P 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i~Gv--P--Vy~sl~e~~~~~~~DVaIdfVP---p 125 (181)
..+|+|+|+ |.||+.+.+.+...|.+-|..+|+.... .. ..|. . .++++.+++. ++|++|.+++ |
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCCCC
Confidence 467999999 9999999999998887534455654321 11 1122 1 2345666666 7999999864 3
Q ss_pred HHHHHHHHHHH
Q 030220 126 PFAAAAIMEAM 136 (181)
Q Consensus 126 ~~a~~~~~eai 136 (181)
-...+.++.+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 44556666654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.78 Score=37.60 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=49.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++..... ... . +++ +-.|...++.+.+.++++.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~-~~r~~~~-~~~------------~--~~~~~~~D~~~~~~~~~~~~~~~ 72 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVT-TARSRPD-DLP------------E--GVEFVAADLTTAEGCAAVARAVL 72 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEE-EeCChhh-hcC------------C--ceeEEecCCCCHHHHHHHHHHHH
Confidence 367999999999999999999999999774 3332211 000 0 111 2345566777777777776
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 73 ~~~~~id~vi~-~ag 86 (260)
T PRK06523 73 ERLGGVDILVH-VLG 86 (260)
T ss_pred HHcCCCCEEEE-CCc
Confidence 65 5777776 555
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.42 Score=41.28 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=41.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-----------e--E--EcCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-----------T--E--HLGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-----------~--e--i~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|.|++|-.|+.+++.+.+.|.+.|.+++.... + . + ..++.=..++++++++.++|++|-+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 379999999999999999999988764444542110 0 0 0 0112212245666665568988887
Q ss_pred eC
Q 030220 123 VP 124 (181)
Q Consensus 123 VP 124 (181)
..
T Consensus 81 A~ 82 (352)
T PRK10084 81 AA 82 (352)
T ss_pred Cc
Confidence 63
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.052 Score=41.93 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----EcC--cc--ccccHHHHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLG--LP--VFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i~G--vP--Vy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
..+|+|+|+ |.+|+.++..+.+.|++-+..+|+.... ++ +.+ +. -|+++.+.+. ++|++|-++|....
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSGMP 88 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTTST
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCCCc
Confidence 578999999 9999999999999999955567765421 11 111 22 2445666666 79999999987654
Q ss_pred HHHHHHHHHcCC---CEEEEe
Q 030220 129 AAAIMEAMEAEL---DLVVCI 146 (181)
Q Consensus 129 ~~~~~eaie~GI---k~IV~i 146 (181)
..-++.++... +.++=+
T Consensus 89 -~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 89 -IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp -SSTHHHHTTTCHHCSEEEES
T ss_pred -ccCHHHHHHHHhhhhceecc
Confidence 34445555553 355443
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.1 Score=36.02 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=54.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++.. +..... .. ...+++... .+++ +..|+..++...+.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~-~r~~~~--~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFN-DGLAAE--AR-----ELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEE-eCCHHH--HH-----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4679999999999999999999999997753 332210 10 011222111 1233 345778888888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|.
T Consensus 79 ~~~~~~id~vi~-~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVN-NAGI 94 (250)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 764 6788877 5554
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.31 Score=41.66 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=56.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cCcc--cc-ccH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LGLP--VF-NSV- 107 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~GvP--Vy-~sl- 107 (181)
||+|+|+ |-.|..+.+.+...|+.-+-.+|+...... + .++. .| ..+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 5899999 999999999998888774444444332210 0 0111 12 122
Q ss_pred ------HHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCCC
Q 030220 108 ------AEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 108 ------~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~~ 151 (181)
+++.+ ++|++|+++-.-.+.. +-+.|.+.+++.|-+-|+|+.
T Consensus 80 ~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~ 128 (234)
T cd01484 80 PEQDFNDTFFE--QFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFK 128 (234)
T ss_pred hhhhchHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 23344 6888888866655544 555667788888877677664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.35 Score=41.74 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=54.6
Q ss_pred EEEccCCCCcchhhHHHHHhC--CeEeee-cCCCCCC----eEE-------cCccccccHHHHhhccCCcEEEEe---eC
Q 030220 62 ICQGITGKNGTFHTEQAIEYG--TKMVGG-VTPKKGG----TEH-------LGLPVFNSVAEAKAETKANASVIY---VP 124 (181)
Q Consensus 62 iVvGatGkmG~~~~k~~~~~g--~~IVag-VdP~~~G----~ei-------~GvPVy~sl~e~~~~~~~DVaIdf---VP 124 (181)
+|.|++|-+|+.+++.+++.| .+|.+. ..+.... ... .++-=+.+++++++ ++|+++-+ ++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 478999999999999999988 565532 2222111 011 12222335777777 78887766 22
Q ss_pred h--------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 125 P--------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 125 p--------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
+ ..++.+++.|.++||+.+|..+
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2 3456788899999999987633
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.52 Score=43.63 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
..+|+|+|+ |+.|+...+.+.+.|.+||+..|.
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 478999999 999999999999999999986554
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.43 Score=44.27 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=27.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
+.+|+|+|+ |-.|.++.|++.-.|+.-+-.+|+..
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 478999999 67999999999988876444566554
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.1 Score=36.78 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=53.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
..++|.|++|.+|+.+++.+.+.|.++++ ++..... .....+.+. ..++ -+-.|...++.+.+.++++.+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~-~~~~~~~------~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVG-INIVEPT------ETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE-ecCcchH------HHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999874 4533211 011111111 0011 234566778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 82 ~~~~~D~li~-~Ag~ 95 (253)
T PRK08993 82 EFGHIDILVN-NAGL 95 (253)
T ss_pred HhCCCCEEEE-CCCC
Confidence 5 5677776 5654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.57 Score=41.86 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=60.6
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhC--CeEeeecCCCC-CCe--EE----cCccccc--c---HHHHhhccCCcEEE
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GGT--EH----LGLPVFN--S---VAEAKAETKANASV 120 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~~-~G~--ei----~GvPVy~--s---l~e~~~~~~~DVaI 120 (181)
.+++.||.|+|+.|+.|+..+..+...+ -+++ .+|..+ .++ ++ ....+.. + ..+.++ ++|++|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDvVV 81 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR--GADLVL 81 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC--CCCEEE
Confidence 5678899999999999998887776433 3333 444322 221 11 0123432 2 245555 799999
Q ss_pred EeeCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 121 IYVPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 121 dfVPp----------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
++.-. ..+.++++.+.++|++.++.+++ -|..-+..+
T Consensus 82 itaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S-NPvdv~~~~ 134 (321)
T PTZ00325 82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS-NPVNSTVPI 134 (321)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHH
Confidence 77533 14556777888899999877443 344444433
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.59 Score=41.26 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVag 88 (181)
.+||+|.|++|-.|+.+++.+.+. |.+|++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 367999999999999999999987 5888754
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.2 Score=35.84 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
+++++|.|++|-+|+.+++.+.+.|.+++. ++...... .+-...+.+-.... ++. +-.|...++...+++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIV-LDIHPMRG----RAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE-EcCccccc----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999999999774 33221110 01111111111111 222 34566778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..|+. ..|.
T Consensus 81 ~~~~~~~~d~vi~-~ag~ 97 (249)
T PRK12827 81 GVEEFGRLDILVN-NAGI 97 (249)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7765 5777777 6564
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.17 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred CceEEEEccCCCC-cchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkm-G~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |.| |...++.+.+.|.++. .++.. ++++.+.+. ++|++|-.++...
T Consensus 44 gk~vlViG~-G~~~G~~~a~~L~~~g~~V~-v~~r~-----------~~~l~~~l~--~aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGR-SNIVGKPLAALLLNRNATVT-VCHSK-----------TKNLKEHTK--QADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCCEEE-EEECC-----------chhHHHHHh--hCCEEEEcCCCCc
Confidence 478999999 987 8889999999888744 45543 246677777 7999999998865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.43 Score=38.73 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=28.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
.+|+|.|++|.+|+.+++.+.+.|++++ .++++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~-~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVI-LVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 5799999999999999999999999876 44544
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.6 Score=35.46 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=48.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++.. +.+... ++++.+ .+++ +..|...++...+.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~-~r~~~~-----------~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA-CRKPDD-----------VARMNS-LGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE-eCCHHH-----------hHHHHh-CCCeEEEeecCCHHHHHHHHHHHHH
Confidence 369999999999999999999989887643 322111 111111 1222 33456667776776666654
Q ss_pred ---cCCCEEEEeCCCC
Q 030220 138 ---AELDLVVCITEGI 150 (181)
Q Consensus 138 ---~GIk~IV~iTtG~ 150 (181)
.++..++. ..|+
T Consensus 70 ~~~~~~~~ii~-~ag~ 84 (256)
T PRK08017 70 LTDNRLYGLFN-NAGF 84 (256)
T ss_pred hcCCCCeEEEE-CCCC
Confidence 34666666 5554
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.5 Score=35.34 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=50.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.|.+++. ++.+.. .+++..++...+ +-.|....+...+..++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAI-TGRDPA-----------SLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-ecCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 443321 112222211112 23466667777777776
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFI-NAGV 90 (249)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 6654 5777777 4454
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.48 Score=41.13 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe------------E---E-cCccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT------------E---H-LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~------------e---i-~GvPVy~sl~e~~~~~~~DVaI 120 (181)
.++|+|.|++|-.|+.+++.+.+.|.+|++. .++..... . + .++.-..+++++++ ++|.+|
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~--~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR--GCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh--CCCEEE
Confidence 4579999999999999999999999998763 33322110 0 0 11222224566665 688877
Q ss_pred EeeC---------hH--------HHHHHHHHHHHcC-CCEEEEeC
Q 030220 121 IYVP---------PP--------FAAAAIMEAMEAE-LDLVVCIT 147 (181)
Q Consensus 121 dfVP---------p~--------~a~~~~~eaie~G-Ik~IV~iT 147 (181)
-+.. .. ....+++.|.+++ ++.+|.++
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 6542 11 2344566666767 77666544
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.86 Score=36.90 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
+.+|+|.|++|..|+.+++.+.+.|.+++....+... +. .+.+++..+. .+.. +..|...++...++++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE--EM-----NETLKMVKENGGEGIGVLADVSTREGCETLAKAT 78 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH--HH-----HHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHH
Confidence 4679999999999999999999999997754433221 11 1112221110 0111 335667777777777777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|+
T Consensus 79 ~~~~~~~d~vi~-~ag~ 94 (252)
T PRK06077 79 IDRYGVADILVN-NAGL 94 (252)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 6777777 6664
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.63 Score=38.31 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++......... . -.+...+++.- .+++ +..|...++.+.+.++++.+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG--A--KETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH--H--HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999987543332211 0 01111222111 1233 34678888888888888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. .+..+|+ ..|+
T Consensus 77 ~~~~id~li~-~ag~ 90 (256)
T PRK12743 77 RLGRIDVLVN-NAGA 90 (256)
T ss_pred HcCCCCEEEE-CCCC
Confidence 4 5777777 5554
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.3 Score=37.71 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCcE---EEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KANA---SVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~DV---aIdfVPp~~a~~~~ 132 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+.. .++++.++. ..++ ..|.+.++.+.+++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~ 76 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLAL-VDLEEA-----------ELAALAAELGGDDRVLTVVADVTDLAAMQAAA 76 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhcCCCcEEEEEecCCCHHHHHHHH
Confidence 356999999999999999999999998663 333221 111111111 1222 26888899999998
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030220 133 MEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~ 150 (181)
+++.+. .+..+|+ ..|+
T Consensus 77 ~~~~~~~g~id~vI~-nAG~ 95 (296)
T PRK05872 77 EEAVERFGGIDVVVA-NAGI 95 (296)
T ss_pred HHHHHHcCCCCEEEE-CCCc
Confidence 888764 5888887 6665
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.1 Score=46.05 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=65.3
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC-eE----E---cCc--cccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H---LGL--PVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G-~e----i---~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+++|+|+ |.+|+.+...+.. .+++.|..+|+.... ++ + .++ .+|.+++++.. ++|+++.++|..
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVTNAK 203 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEccCCC
Confidence 367999999 9999998887765 588877777765322 11 1 133 45788999887 899999999977
Q ss_pred HHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHH
Q 030220 127 FAAAAIMEAMEAELDLVVCITE---GIPQHDMVIN 158 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTt---G~~~ed~~~l 158 (181)
. .-.. ++++.|.+.+-+ .. +..|-+..-+
T Consensus 204 ~-p~i~-~~l~~G~hV~~i-Gs~~p~~~E~~~~~~ 235 (325)
T PRK08618 204 T-PVFS-EKLKKGVHINAV-GSFMPDMQELPSEAI 235 (325)
T ss_pred C-cchH-HhcCCCcEEEec-CCCCcccccCCHHHH
Confidence 4 3334 888889886443 33 4555554333
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.11 Score=45.44 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=47.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccc--cccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
..||+|+|+ |.+|+.+.+.+...|.++.. +|+..... . -.|... |+++.+.+. ++|++|.++|+....+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v-~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVTV-GARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTK 225 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhH
Confidence 478999999 99999999999998987553 34332110 0 123332 235667666 7999999999865443
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.1 Score=36.71 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... .. . ..+++.+. .++. +..|...++.+.+.++++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r~~~~--~~--~---~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIII-NDITAER--AE--L---AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcCCHHH--HH--H---HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 356999999999999999999999998774 3322110 00 0 11222111 0111 235677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|.
T Consensus 81 ~~~~~~id~vi~-~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLIN-NAGI 96 (254)
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 765 5788887 6664
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.48 Score=38.63 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++ .++...... . ...+... .++ =+..|...++...+.++++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~~~~-----~---~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSEDVA-----E---VAAQLLG-GNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCHHHH-----H---HHHHhhC-CceEEEEecCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999876 444432110 0 1111111 111 24467778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 85 ~~~~~~d~vi~-~ag~ 99 (255)
T PRK06841 85 SAFGRIDILVN-SAGV 99 (255)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 65 6777777 5554
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.7 Score=39.09 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=26.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhC--CeEeeecC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT 90 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g--~~IVagVd 90 (181)
+|+|.|+||..|+.+++.+.+.| .+|++.+-
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 48999999999999999999887 66887653
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.27 Score=44.22 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred eEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCC-----------------------e---EEcC---ccccc--
Q 030220 60 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-----------------------T---EHLG---LPVFN-- 105 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G-----------------------~---ei~G---vPVy~-- 105 (181)
||.|-|+ |+.|+.+.+.+.+. ++++|+..|+.... . .+.| +.|+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 6899999 99999999987764 68899865542100 0 0112 23442
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++++. ++.++|+++.++......+.+...+++|.+.|++
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~i 120 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 120 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEe
Confidence 344442 3347999999999999999999999999999887
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.41 Score=40.80 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---------------------------Ec-C--ccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------------------HL-G--LPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---------------------------i~-G--vPVy~-- 105 (181)
+.+|+|+|+ |-.|+.+++.+...|..-+-.+|+...... ++ . +..++
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 467999999 999999999999888753334454332110 00 1 11121
Q ss_pred ----cHHHHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 106 ----SVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 106 ----sl~e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++.++.. .++|++|+++-. +.-....+.|.+++++.|...+.|
T Consensus 90 i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 LTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred cCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 2333332 257888887543 333446667777788887766655
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.5 Score=35.32 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=47.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|..|+.+++.+.+.|.+++. ++... + .+++..+..+++ +..|+..++.+.+..+. .
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r~~--~---------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~--~ 75 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVA-AARNA--A---------ALDRLAGETGCEPLRLDVGDDAAIRAALAA--A 75 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeCCH--H---------HHHHHHHHhCCeEEEecCCCHHHHHHHHHH--h
Confidence 57999999999999999999998988764 44332 1 112222211222 33566666655555544 2
Q ss_pred cCCCEEEEeCCCC
Q 030220 138 AELDLVVCITEGI 150 (181)
Q Consensus 138 ~GIk~IV~iTtG~ 150 (181)
.++..|++ ..|.
T Consensus 76 ~~~d~vi~-~ag~ 87 (245)
T PRK07060 76 GAFDGLVN-CAGI 87 (245)
T ss_pred CCCCEEEE-CCCC
Confidence 35777877 5554
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.29 Score=45.72 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=64.6
Q ss_pred CcchhhHHHHHhCCeEee-ecCCCCCCeEE------cCccccccHHHHhhcc-CCcEEEEeeChHH-HHHHHHHHHHcCC
Q 030220 70 NGTFHTEQAIEYGTKMVG-GVTPKKGGTEH------LGLPVFNSVAEAKAET-KANASVIYVPPPF-AAAAIMEAMEAEL 140 (181)
Q Consensus 70 mG~~~~k~~~~~g~~IVa-gVdP~~~G~ei------~GvPVy~sl~e~~~~~-~~DVaIdfVPp~~-a~~~~~eaie~GI 140 (181)
||+..+.++.+.|++++. ..+|.+...-. .|+..+++++|+.+.. ++|++++.+|... +.++++.++..--
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 899999999999999763 23333321101 2477888999998743 4899999999874 4555566555421
Q ss_pred --CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 141 --DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 141 --k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
+.||- ++....+|..++.+.+++..+.|
T Consensus 81 ~GdiiID-~gn~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 81 KGDIIID-GGNSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHhcCCeE
Confidence 23554 55566667777777776655543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.3 Score=40.24 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred cchhhHHHHHhCCeEe-eecCCCCCCe------EEcCccccccHHHHhhccCCcEEEEeeChHHH-HHHHHHHHHcCC--
Q 030220 71 GTFHTEQAIEYGTKMV-GGVTPKKGGT------EHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAIMEAMEAEL-- 140 (181)
Q Consensus 71 G~~~~k~~~~~g~~IV-agVdP~~~G~------ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~~eaie~GI-- 140 (181)
|+..++.+.+.|+++. ...|+..... .-.|..+.++..++.+ ++|+++.++|...+ .++++.++++--
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~G 109 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPEN 109 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCCC
Confidence 4466777777899865 3344432110 1148888899999988 79999999998874 466555444422
Q ss_pred CEEEEeCCCCCHHHHHHHHH
Q 030220 141 DLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 141 k~IV~iTtG~~~ed~~~l~~ 160 (181)
+.||. ++=++.+..-++.+
T Consensus 110 aIVID-~STIsP~t~~~~~e 128 (341)
T TIGR01724 110 AVICN-TCTVSPVVLYYSLE 128 (341)
T ss_pred CEEEE-CCCCCHHHHHHHHH
Confidence 24555 44455555544444
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.3 Score=36.16 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
..+|+|.|++|..|+.+++.+.+.|.+ |+ .++..... . + ...+++ ++...+ +-+|+..++.+.+.++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~-~~~r~~~~--~---~--~~~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLV-ICGRNAEK--G---E--AQAAEL-EALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEE-EEcCCHHH--H---H--HHHHHH-HhcCCeEEEEEccCCCHHHHHHHHH
Confidence 466999999999999999999998888 55 45543211 1 1 111222 111222 4467788888888888
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030220 134 EAMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~~ 151 (181)
.+.+. ++..++. ..|..
T Consensus 77 ~~~~~~g~id~li~-~ag~~ 95 (260)
T PRK06198 77 AADEAFGRLDALVN-AAGLT 95 (260)
T ss_pred HHHHHhCCCCEEEE-CCCcC
Confidence 77654 6888887 66653
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.9 Score=37.51 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|+++-+|+.+++.+.+.|.+++. ++.... +...+..++. ++. +.+|...++.+.+++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~-~~~~~~----------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVG-VGVAEA----------PETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-ecCchH----------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 466899999999999999999999999874 333210 0111112211 222 45688889999999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 77 ~~~~~g~iD~lv~-~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILIN-NAGI 93 (251)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8765 5777887 6665
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.14 Score=40.34 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=56.5
Q ss_pred EEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCCe------E-------E-----------------cCccccc---
Q 030220 61 VICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT------E-------H-----------------LGLPVFN--- 105 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G~------e-------i-----------------~GvPVy~--- 105 (181)
|+|.|+||..|+...+.+.++ .|+|++...-+.... + + .++.+|.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 578999999999888888885 588887533111110 0 0 1444554
Q ss_pred cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.|+.+..++|+++..+.-.....-...|+++|.+..+.
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA 120 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA 120 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence 2556666568899999999999999999999999776543
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=44.35 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCe----Eee---------e--------cCCCCCC-eEE------cCccccccH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTK----MVG---------G--------VTPKKGG-TEH------LGLPVFNSV 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~----IVa---------g--------VdP~~~G-~ei------~GvPVy~sl 107 (181)
..||+++|. |+.|+.+.+.+.+. .+. .|. + +|-.... +-+ ..+.+-+++
T Consensus 21 ~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 478999998 99999988877663 221 111 0 1111100 000 235566688
Q ss_pred HHHhhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCCHH-------HHHHHHHHhhhhchh
Q 030220 108 AEAKAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIPQH-------DMVINFTRVNILLVA 168 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~---GIk~IV~iTtG~~~e-------d~~~l~~~ak~ipv~ 168 (181)
.++.. +.|+.|..+|+++..++++++... ++..|-+ +-||... -+.++...+-.||+.
T Consensus 100 ~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL-~KG~e~~~~g~~i~liS~iI~~~lgI~~~ 167 (372)
T KOG2711|consen 100 VEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATAISL-IKGVEVGEEGPGIRLISQIIHRALGIPCS 167 (372)
T ss_pred HHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEe-ecceeccCCCCceeehHHHHHHHhCCCce
Confidence 88877 899999999999999999998754 6666655 7787743 344455445455544
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.1 Score=36.60 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=44.9
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie~ 138 (181)
|++|.|++|.+|+.+++.+.+.|.+++. ++.+.. .+++..++.+++ +..|...++...+++++..+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~-~~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~- 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTL-VGARRD-----------DLEVAAKELDVDAIVCDNTDPASLEEARGLFPH- 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHhccCcEEecCCCCHHHHHHHHHHHhh-
Confidence 6999999999999999999998998774 343321 111221111122 22455666666666555432
Q ss_pred CCCEEEE
Q 030220 139 ELDLVVC 145 (181)
Q Consensus 139 GIk~IV~ 145 (181)
.+..+|+
T Consensus 69 ~id~lv~ 75 (223)
T PRK05884 69 HLDTIVN 75 (223)
T ss_pred cCcEEEE
Confidence 5777776
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.47 Score=38.81 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|..|+.+++.+.+.|.+++. ++.... ... .+...+++. ..+++ +-.|...++.+.+.++++.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~-~~r~~~--~~~--~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLV-NGRNAA--TLE--AAVAALRAA--GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEE-EeCCHH--HHH--HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998774 443320 110 111111110 11233 2346677888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..++. ..|.
T Consensus 84 ~~~~~id~vi~-~ag~ 98 (256)
T PRK06124 84 AEHGRLDILVN-NVGA 98 (256)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 63 4667777 5564
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.52 Score=42.09 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=58.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cCccc--cc-cH-
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LGLPV--FN-SV- 107 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~GvPV--y~-sl- 107 (181)
||+|+|+ |-.|.++++.+...|+.-+..+|+...... + .++.| |. .+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 6899999 999999999999889886666665543311 0 12222 21 12
Q ss_pred -----HHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCC
Q 030220 108 -----AEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 108 -----~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~ 150 (181)
.+..+ ++|++|+..-...+.. +-+.|.+.+++.|-+-|.|+
T Consensus 80 ~~~~~~~f~~--~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~ 126 (312)
T cd01489 80 DPDFNVEFFK--QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF 126 (312)
T ss_pred CccchHHHHh--cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence 23444 6888888876666555 55566778888887666664
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.16 Score=44.87 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe-----EE---cC--ccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-----EH---LG--LPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~-----ei---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |.+|+.+.+.+.. .+++.+...|+..... ++ .| +.++++++++++ +|+++.++|..
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTps~ 204 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTPSR 204 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecCCC
Confidence 467999999 9999999998876 4888888878765321 11 24 456889999874 89999999975
Q ss_pred HHHHHHHHHHHcCCCE
Q 030220 127 FAAAAIMEAMEAELDL 142 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~ 142 (181)
.-. .-.+.++.|.+.
T Consensus 205 ~P~-~~~~~l~~g~hV 219 (326)
T PRK06046 205 KPV-VKAEWIKEGTHI 219 (326)
T ss_pred CcE-ecHHHcCCCCEE
Confidence 411 123345666653
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.67 Score=41.46 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=67.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC-C-eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI--- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~-G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~--- 132 (181)
.+++.|+|. |+.|+.+.+.+..+|++|.+ .|+... . .+..+.. |-+++|+++ +.|++++..|...--..+
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~y-~~~~~~~~~~~~~~~~-y~~l~ell~--~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGMKVLY-YDRSPNPEAEKELGAR-YVDLDELLA--ESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEEE-ECCCCChHHHhhcCce-eccHHHHHH--hCCEEEEeCCCChHHhhhcCH
Confidence 467999999 99999999999988999774 343321 1 1122333 445999998 899999999975543322
Q ss_pred HHHHHcCCCE-EEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 133 MEAMEAELDL-VVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 133 ~eaie~GIk~-IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+..-..+-.. +|+ |.-=+.-|...|.++-++--++
T Consensus 221 ~~l~~mk~ga~lVN-taRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 221 EELAKMKPGAILVN-TARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHHHhCCCCeEEEE-CCCccccCHHHHHHHHHhCCcc
Confidence 2222334434 455 5555556666666666555444
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.73 Score=37.16 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .....+++.+ ...+ +-+|...++.+.+.++.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~r~~~~-------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLA-LIDLNQEK-------LEEAVAECGA-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCCHHH-------HHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 45699999999999999999999898866 45543211 1111122211 1122 45667778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..||. ..|.
T Consensus 76 ~~~~~~~id~vi~-~ag~ 92 (253)
T PRK08217 76 IAEDFGQLNGLIN-NAGI 92 (253)
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7653 5788887 5554
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.8 Score=34.79 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-.|+.+++.+.+.|.+++....+.. . .. -...+++... .+++ +-+|...++...+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-A-AA-----DELVAEIEAAGGRAIAVQADVADAAAVTRLFDAA 77 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-H-HH-----HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 367999999999999999999999998774432221 0 00 0011121110 1222 335677788888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|+
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (245)
T PRK12937 78 ETAFGRIDVLVN-NAGV 93 (245)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 6888887 5664
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.86 Score=36.64 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=52.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.++++ +++.... ... .....+.+... ..+. +..|.+-.+....+++++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~-~~r~~~~-~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAI-HYHRSAA-EAD--ALAAELNALRP-GSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EcCCCHH-HHH--HHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHH
Confidence 357999999999999999999999999874 4443211 000 00011111100 0111 3346677777788777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..|+. ..|.
T Consensus 81 ~~~~~~d~vi~-~ag~ 95 (249)
T PRK09135 81 AAFGRLDALVN-NASS 95 (249)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 55 5777777 5553
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.4 Score=42.36 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=72.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhcc-CCcEEEEeeChH-HHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAET-KANASVIYVPPP-FAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~-~~DVaIdfVPp~-~a~~~~~ea 135 (181)
++-++|. ||||..+.+.+++.|-++|+ .+||..... .-.|...-+|++|++.+. .|.++=+-||+. .+..+++++
T Consensus 2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 5788999 99999999999999999776 577665321 114667777888887764 578888888887 666666665
Q ss_pred HHcCCC-EEEEeCCCCCHHHHHHHHHHhhhhchhch
Q 030220 136 MEAELD-LVVCITEGIPQHDMVINFTRVNILLVAFL 170 (181)
Q Consensus 136 ie~GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv~~~ 170 (181)
-..==+ -||+=...-.-+|..+-.+..++..|.|+
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl 116 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE
Confidence 544222 24442333444566665555555555543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.83 Score=43.90 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE---EcCccccc-c-------HHHHhhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---HLGLPVFN-S-------VAEAKAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e---i~GvPVy~-s-------l~e~~~~~~~DVaId 121 (181)
-+.++++|+|.|++|-.|+.+++.+.+. |.+|++.......-.. ..++..+. + ++++++ ++|++|-
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViH 388 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLP 388 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEE
Confidence 4556789999999999999999999985 7998865322110000 01233221 3 233444 7998885
Q ss_pred ee----Ch--------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 122 YV----PP--------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 122 fV----Pp--------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+. |. .....+++.|.++| +.+|.+++
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS 432 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST 432 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence 32 21 22345677777888 55554454
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.53 Score=38.81 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++.+... . -...+++.+..++. +..|...++.+.+.++++.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVI-SSRNEEN--L-----EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEE-EeCCHHH--H-----HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999998663 3433211 0 01112221111222 34567778888888888776
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 73 ~~g~id~li~-naG~ 86 (259)
T PRK08340 73 LLGGIDALVW-NAGN 86 (259)
T ss_pred hcCCCCEEEE-CCCC
Confidence 4 5777777 6665
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=1 Score=36.85 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D---VaIdfVPp~~a~~~~~ 133 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++..... .....+++.+.. +.+ +.+|...++...+.++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~-~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLI-VARDADA-------LAQARDELAEEFPEREVHGLAADVSDDEDRRAILD 80 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCCHHH-------HHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 457999999999999999999999999764 3332211 011112221110 112 2456777888888887
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..++. ..|.
T Consensus 81 ~~~~~~g~id~li~-~ag~ 98 (257)
T PRK09242 81 WVEDHWDGLHILVN-NAGG 98 (257)
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77654 6788877 6664
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.55 Score=43.97 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
+..+|+|+|+ |+.|+..++.+.+.|.+||+.-|
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 3478999999 99999999999999999996433
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.85 Score=38.89 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=56.3
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe------------EE----cCccccccHHHHhhccCCcE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT------------EH----LGLPVFNSVAEAKAETKANA 118 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~------------ei----~GvPVy~sl~e~~~~~~~DV 118 (181)
+..++|+|.|++|-.|+.+++.+.+.|.++++ ..++..... .+ .++.-..+++++++ ++|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc--CCCE
Confidence 44578999999999999999999999999765 345432110 00 12222224566665 6898
Q ss_pred EEEeeCh----------HH--------HHHHHHHHHHc-CCCEEEEeCC
Q 030220 119 SVIYVPP----------PF--------AAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 119 aIdfVPp----------~~--------a~~~~~eaie~-GIk~IV~iTt 148 (181)
+|-+... .. ...+++.|.+. +++.||.+++
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS 129 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSS 129 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 8877631 11 23445555554 5666776564
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.49 Score=38.87 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-.|+.+++.+.+.|.+++. ++..... .. .....+.+. ..+++ +-.|...++...+.++++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVL-SARKAEE--LE--EAAAHLEAL--GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeCCHHH--HH--HHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998663 3432211 10 011111110 00121 4557778888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..++. ..|.
T Consensus 85 ~~~~~id~vi~-~ag~ 99 (259)
T PRK08213 85 ERFGHVDILVN-NAGA 99 (259)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 64 6888887 5553
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.22 Score=43.63 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
...+++|-|||+..|.+.++.+.+.|++++ .|.+...- + ..++..+++.- ..+++ +.+|.+-++.+..+.++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~~k--L--~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLI-LVARREDK--L--EALAKELEDKT-GVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcHHH--H--HHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHH
Confidence 346799999999999999999999999987 66665521 2 12333333321 12343 467888899999999999
Q ss_pred HHc--CCCEEEEeCCCC------CHHHHHHHHHH
Q 030220 136 MEA--ELDLVVCITEGI------PQHDMVINFTR 161 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~------~~ed~~~l~~~ 161 (181)
.+. .|...|+ -.|| .+.+..+++++
T Consensus 79 ~~~~~~IdvLVN-NAG~g~~g~f~~~~~~~~~~m 111 (265)
T COG0300 79 KERGGPIDVLVN-NAGFGTFGPFLELSLDEEEEM 111 (265)
T ss_pred HhcCCcccEEEE-CCCcCCccchhhCChHHHHHH
Confidence 888 6777887 5554 44444444444
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.9 Score=37.53 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=53.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+|+. ++.... .++++.+. .++. +-.|...++...+.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAV-LDKSAA-----------GLQELEAAHGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHhhcCCceEEEEeccCCHHHHHHHHHH
Confidence 467999999999999999999999999774 443221 11221111 1222 33566777888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 73 ~~~~~g~id~li~-~Ag~ 89 (262)
T TIGR03325 73 CVAAFGKIDCLIP-NAGI 89 (262)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7764 5777887 6564
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.1 Score=34.58 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=52.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC---C-cEEEEeeChHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK---A-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~---~-DVaIdfVPp~~a~~~~~ea 135 (181)
+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .... . .+++.+... + .+..|...++...+.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~-~~r~~~~-~~~~--~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFL-TDINDAA-GLDA--F---AAEINAAHGEGVAFAAVQDVTDEAQWQALLAQA 73 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCcch-HHHH--H---HHHHHhcCCCceEEEEEeecCCHHHHHHHHHHH
Confidence 4899999999999999999999999763 3332111 1110 1 111111111 1 2445788888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..++. ..|+
T Consensus 74 ~~~~~~id~vi~-~ag~ 89 (251)
T PRK07069 74 ADAMGGLSVLVN-NAGV 89 (251)
T ss_pred HHHcCCccEEEE-CCCc
Confidence 763 5777777 5554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.9 Score=35.29 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=53.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|..|+.+++.+.+.|.+|+. ++.... +.. .+.+.+++.+ ++ +..|...++...+.++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~-~~r~~~--~~~------~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVIL-NGRDPA--KLA------AAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEE-EeCCHH--HHH------HHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999999999774 443321 110 1111112111 22 33477888888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..++. ..|.
T Consensus 81 ~~~~~~~~d~li~-~ag~ 97 (255)
T PRK07523 81 FEAEIGPIDILVN-NAGM 97 (255)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7654 4667776 5554
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.31 E-value=2.7 Score=34.22 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=61.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-eEEcCccccc-------cHHHHhhccCCcEEEEeeC-----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEHLGLPVFN-------SVAEAKAETKANASVIYVP----- 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-~ei~GvPVy~-------sl~e~~~~~~~DVaIdfVP----- 124 (181)
++|+|.|+||..|+.+++.+.+.|.++++.+. |++.. .. .++.+.. ++....+ +.|..++.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~~~~~~ 77 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAK--GVDGVLLISGLLDGS 77 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhc--cccEEEEEecccccc
Confidence 46999999999999999999999999887643 22211 01 2232222 3444444 7887777777
Q ss_pred ----hHHHHHHHHHHHHcC--CCEEEEeC----CCCCHHHHHHHHHHhhhhchhc
Q 030220 125 ----PPFAAAAIMEAMEAE--LDLVVCIT----EGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 125 ----p~~a~~~~~eaie~G--Ik~IV~iT----tG~~~ed~~~l~~~ak~ipv~~ 169 (181)
......++..+..++ ++.++-.+ ..-+.....+-...++++-.++
T Consensus 78 ~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~s 132 (275)
T COG0702 78 DAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSS 132 (275)
T ss_pred cchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 122233333344433 55544322 2245555555555555444433
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.74 Score=38.35 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=26.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+|+|.|++|-.|+.+++.+.+.|.++++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 49999999999999999999999998853
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.55 Score=38.94 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCccccc-cHH-HHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN-SVA-EAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~GvPVy~-sl~-e~~~~~~~DVaIdfVPp~~a 128 (181)
+..+|+|+|+ |++|...++.+.+.|.+|+ .|+|.... ++ ..+..-. .+. +-+. ++|++|..+.....
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~~~-~l~~l~~~~~i~~~~~~~~~~~l~--~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPELTE-NLVKLVEEGKIRWKQKEFEPSDIV--DAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCCCH-HHHHHHhCCCEEEEecCCChhhcC--CceEEEEcCCCHHH
Confidence 4578999999 9999999999999988766 56776432 11 1121111 121 2233 68999999888777
Q ss_pred HHHHHHHHHcCCCEE----------------------EEe-CCCCCHHHHHHHHHHhhh-hchhchhhhh
Q 030220 129 AAAIMEAMEAELDLV----------------------VCI-TEGIPQHDMVINFTRVNI-LLVAFLNFIM 174 (181)
Q Consensus 129 ~~~~~eaie~GIk~I----------------------V~i-TtG~~~ed~~~l~~~ak~-ipv~~~~~~~ 174 (181)
...+....+.++..- +.+ |.|-+..-..+|.+.-+. .|=..+.|+-
T Consensus 84 N~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~ 153 (202)
T PRK06718 84 NEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYID 153 (202)
T ss_pred HHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHH
Confidence 666665556665321 112 467677666666665544 4555555543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.83 Score=39.64 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEeeec-CCCCCC---eEE--cCcccc-------ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGV-TPKKGG---TEH--LGLPVF-------NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVagV-dP~~~G---~ei--~GvPVy-------~sl~e~~~~~~~DVaIdf 122 (181)
.++|+|.|++|-.|+.+++.+.+.| .+|++.. ++.... .+. .++.++ .++.++++ ++|++|-+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVHA 81 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEEC
Confidence 4679999999999999999988864 5666432 221100 000 112222 24555555 68988875
Q ss_pred eCh------------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.-. .....+++.|.+.|++.+|.+++.
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 321 135567778888899888876753
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=1 Score=36.64 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=27.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV 89 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV 89 (181)
.+|+|.|++|..|+.+++.+.+.|.++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4699999999999999999999999988643
|
|
| >COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.7 Score=37.83 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=69.9
Q ss_pred CceEEEEccC--CCCcchhhHHHHHhCCeEeeecCCCCC-Ce-----------EEcCccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGat--GkmG~~~~k~~~~~g~~IVagVdP~~~-G~-----------ei~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+.+|+++.-. ||.|. +++.|+++|++-...|+|... .. -+.+-.||++++|++. ++|.++=++
T Consensus 4 ~i~iVLVep~~~gNIG~-vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aTt 80 (242)
T COG0565 4 NIRIVLVEPSHPGNIGS-VARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVATT 80 (242)
T ss_pred ccEEEEEcCCCCccHHH-HHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEec
Confidence 4567777654 77775 678899999996668898874 11 1357899999999998 889888765
Q ss_pred --------ChHHHHHHHHHHHHc--CCCEEEEeC---CCCCHHHHHHHHHHhhhhch
Q 030220 124 --------PPPFAAAAIMEAMEA--ELDLVVCIT---EGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 124 --------Pp~~a~~~~~eaie~--GIk~IV~iT---tG~~~ed~~~l~~~ak~ipv 167 (181)
|+..=.+...++.+. |=+..+.|. .|++-|++.+-... -.||.
T Consensus 81 ar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~-v~IP~ 136 (242)
T COG0565 81 ARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVL-VTIPA 136 (242)
T ss_pred cccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEE-EecCC
Confidence 111222333333322 455555566 89999988764433 34553
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.25 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=41.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----E---cCc-----cccc--cHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----H---LGL-----PVFN--SVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i---~Gv-----PVy~--sl~e~~~~~~~DVaIdf 122 (181)
..+++|+|++|.+|+...+.+.+.|.+++ .++++... ++ + .+. ..++ ++.+.++ ++|++|-+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK--GADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh--cCCEEEEC
Confidence 46899999999999999999888887765 33433210 00 0 011 1121 2334444 68888888
Q ss_pred eChHH
Q 030220 123 VPPPF 127 (181)
Q Consensus 123 VPp~~ 127 (181)
+|...
T Consensus 105 t~~g~ 109 (194)
T cd01078 105 GAAGV 109 (194)
T ss_pred CCCCc
Confidence 87665
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.4 Score=35.45 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
..+|+|.|++|..|+.+++.+.+.|.+++..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 3579999999999999999999999997743
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.08 E-value=1.8 Score=31.52 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEE---eeChHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVI---YVPPPFAAAAIMEAM 136 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaId---fVPp~~a~~~~~eai 136 (181)
+|+|+|.-..+-...-+.+.++|++.+.- .+.. +.+ +--..+++.+. ++|++|+ ++.......+-++|-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~-~~~----~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG-GDE----KKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC-CCc----cchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHH
Confidence 58999953355556666677789997644 2211 200 11112555555 7898766 467888999999999
Q ss_pred HcCCCEEEEeCCCCC
Q 030220 137 EAELDLVVCITEGIP 151 (181)
Q Consensus 137 e~GIk~IV~iTtG~~ 151 (181)
+.|+|.+.+=+.|.+
T Consensus 73 k~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 73 KYGIPIIYSRSRGVS 87 (97)
T ss_pred HcCCcEEEECCCCHH
Confidence 999999987445554
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.55 Score=42.24 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
++.+|+|+|+ |-.|+.+++.+...|..-+..+|+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4578999999 9999999999999888745466665
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.8 Score=35.51 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|..|+.+++.+.+.|.+++. ++.....+ .+.+...+. ++. +..|...++.+.+++++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 84 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIII-TTHGTNWD---------ETRRLIEKEGRKVTFVQVDLTKPESAEKVVKE 84 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCcHHH---------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999999999998763 33221110 112222111 122 34566778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 85 ~~~~~g~id~li~-~ag~ 101 (258)
T PRK06935 85 ALEEFGKIDILVN-NAGT 101 (258)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8765 5788887 5554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.2 Score=35.92 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=49.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCcE-EEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANA-SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~DV-aIdfVPp~~a~~~~~ea 135 (181)
.++|+|.|++|..|+.+++.+.+.|.+|++ ++..... . + ...+++... .++++ ..|...++.+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~-~~r~~~~--~---~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIV-VDICGDD--A---A--ATAELVEAAGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEE-EeCCHHH--H---H--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 357999999999999999999999998774 3332210 0 0 111111111 01221 23556677777777766
Q ss_pred HHc--CCCEEEEeC
Q 030220 136 MEA--ELDLVVCIT 147 (181)
Q Consensus 136 ie~--GIk~IV~iT 147 (181)
.+. .+..|++.+
T Consensus 78 ~~~~~~~d~vi~~a 91 (251)
T PRK12826 78 VEDFGRLDILVANA 91 (251)
T ss_pred HHHhCCCCEEEECC
Confidence 543 577777744
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.66 Score=42.74 Aligned_cols=83 Identities=8% Similarity=0.144 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-c--CCCCCCeEEcC-cccc--cc---HHHHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-V--TPKKGGTEHLG-LPVF--NS---VAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-V--dP~~~G~ei~G-vPVy--~s---l~e~~~~~~~DVaIdfVPp~~a 128 (181)
++||+|+|. |.-.+.++..+.+.|.++.+. . ||.. ..+.. .-.+ .+ +.++.+++++|.+|...-...+
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 478999998 766677887788888876654 3 3332 01111 1112 13 4445566789999988777778
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
...++++.+.|++.+
T Consensus 79 ~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 79 TPLVNNLLKRGIKVA 93 (435)
T ss_pred HHHHHHHHHCCCcEE
Confidence 888888889998754
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.7 Score=35.69 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|-+|+.+++.+.+.|.+++......... .. .+...+.+. ..+++ +..|...++...++++++.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~ 82 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDE--AE--ALAAEIRAL--GRRAVALQADLADEAEVRALVARAS 82 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH--HH--HHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999887544432211 00 111111110 11222 3346677788888777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|. ..|+
T Consensus 83 ~~~~~iD~vi~-~ag~ 97 (258)
T PRK09134 83 AALGPITLLVN-NASL 97 (258)
T ss_pred HHcCCCCEEEE-CCcC
Confidence 53 5777877 5554
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.1 Score=35.26 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~-DVaIdfVPp~~a~~~~~ 133 (181)
...++|.|++|.+|+.+++.+.+.|.+++ .++..... .. .. .+++.+.. ++ -+..|...++.+.+.++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVA-ICGRDEER--LA--SA---EARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCHHH--HH--HH---HHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 35689999999999999999999999976 34443211 10 01 12222111 11 24568888999999988
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 80 ~~~~~~g~id~li~-~Ag~ 97 (265)
T PRK07062 80 AVEARFGGVDMLVN-NAGQ 97 (265)
T ss_pred HHHHhcCCCCEEEE-CCCC
Confidence 88764 5788887 6665
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.9 Score=35.31 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=52.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|..|+.+++.+.+.|.+++.. +..... .. .....+.+.. .++. +..|...++...++++++.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~-~r~~~~--~~--~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLA-ARNETR--LA--SLAQELADHG--GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEE-eCCHHH--HH--HHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999999999999999989887743 332210 00 1111111110 0121 23466777788888887765
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..||. ..|.
T Consensus 75 ~~~~id~vi~-~ag~ 88 (263)
T PRK06181 75 RFGGIDILVN-NAGI 88 (263)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6888887 5554
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.74 Score=37.23 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=51.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|..|+.+++.+.+.|.+|+. ++..... .. .. .++. +.. ++. +..|...++...++++++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~-~~r~~~~--~~--~~---~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGL-LARTEEN--LK--AV---AEEV-EAYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHH-HHhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 56999999999999999999999998775 4432211 00 01 1111 111 121 344566777777777776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+++ +.|.
T Consensus 79 ~~~~~~id~vi~-~ag~ 94 (239)
T PRK07666 79 KNELGSIDILIN-NAGI 94 (239)
T ss_pred HHHcCCccEEEE-cCcc
Confidence 654 7888887 5554
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.6 Score=35.31 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=50.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++....+.... .....+++... .++. +..|...++.+...+++..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-------AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID 77 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999877543332210 11111221110 0121 3356667777777777665
Q ss_pred Hc--CCCEEEEeC
Q 030220 137 EA--ELDLVVCIT 147 (181)
Q Consensus 137 e~--GIk~IV~iT 147 (181)
+. ++..+++.+
T Consensus 78 ~~~~~id~vi~~a 90 (250)
T PRK08063 78 EEFGRLDVFVNNA 90 (250)
T ss_pred HHcCCCCEEEECC
Confidence 54 577787744
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.1 Score=36.27 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|.+|+.+++.+.+.|.+++....++... . -.+...+++.. .++ -+-.|...++...++++++.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAA--A--EETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHH--H--HHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999876543332211 0 01222222110 012 233566677778888877765
Q ss_pred c--CCCEEEEeCCC
Q 030220 138 A--ELDLVVCITEG 149 (181)
Q Consensus 138 ~--GIk~IV~iTtG 149 (181)
. .+..+|+ ..|
T Consensus 77 ~~~~id~li~-~ag 89 (248)
T PRK06947 77 AFGRLDALVN-NAG 89 (248)
T ss_pred hcCCCCEEEE-CCc
Confidence 4 5777777 444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.5 Score=35.00 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++.+... ++++.++. ++ -+..|...++...+.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAI-VDIDADN-----------GAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHHH-----------HHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 3432210 11111111 12 134577788888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|.
T Consensus 74 ~~~~~g~id~lv~-~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVN-LACT 90 (261)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7664 5777777 5553
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.65 Score=45.58 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
+.+|+|+|+ |-.|+.+++.+...|..-+-.+|+
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcC
Confidence 478999999 999999999998887653333443
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.1 Score=35.11 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=53.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. ..++... ..+++ +..|...++.+.+.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv-~~~r~~~~-----~~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLI-LLDISPEI-----EK---LADELCGRGHRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE-EecCCHHH-----HH---HHHHHHHhCCceEEEECCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999866 45543210 01 1122111 11222 345777788888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..++. ..|+
T Consensus 77 ~~~~~~id~vi~-~ag~ 92 (263)
T PRK08226 77 KEKEGRIDILVN-NAGV 92 (263)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 764 5777777 6564
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.98 Score=37.89 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=50.2
Q ss_pred EEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCCeEE---cCccccc------cHHHHhhc--cCCcEEEEeeCh---
Q 030220 61 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEH---LGLPVFN------SVAEAKAE--TKANASVIYVPP--- 125 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G~ei---~GvPVy~------sl~e~~~~--~~~DVaIdfVPp--- 125 (181)
|+|.|++|-+|+.+++.+.+.|. +++ +++.......+ .+..+.. .++.+.++ .++|++|-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~ 79 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL-VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT 79 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE-EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence 57999999999999999999887 455 44422211111 1111222 23333221 479999877632
Q ss_pred -------------HHHHHHHHHHHHcCCCEEEE
Q 030220 126 -------------PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 126 -------------~~a~~~~~eaie~GIk~IV~ 145 (181)
..+..+++.|.+++++.|..
T Consensus 80 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 112 (314)
T TIGR02197 80 TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA 112 (314)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 23455677788889875544
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.7 Score=33.76 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|..|+.+++.+.+.|..++. .+.... .+++...+ .++. +..|....+.+.+.+++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGL-HGTRVE-----------KLEALAAELGERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EcCCHH-----------HHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 467999999999999999999998886553 332211 11111111 1222 34567778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 74 ~~~~~~~id~vi~-~ag~ 90 (245)
T PRK12936 74 AEADLEGVDILVN-NAGI 90 (245)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7764 5788887 5554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.8 Score=37.87 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+ .+++ ++...+ +..|...++.+.+++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl-~~R~~~~--l~--~~---~~~l-~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVL-LARGEEG--LE--AL---AAEI-RAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHH-HHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 356999999999999999999999999764 3433211 10 01 1122 111222 34688889999999888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 79 ~~~~~g~iD~lIn-nAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVN-NAMV 95 (334)
T ss_pred HHHHCCCCCEEEE-CCCc
Confidence 8765 6888887 6664
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=1 Score=42.34 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccc------------c-ccHHHHhh------------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV------------F-NSVAEAKA------------ 112 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPV------------y-~sl~e~~~------------ 112 (181)
..+|+|+|+ |+.|+..++.+.+.|.++|+.-|....=-.-.|+.+ . .+++++.+
T Consensus 237 Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~ 315 (454)
T PTZ00079 237 GKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKK 315 (454)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcC
Confidence 468999999 999999999999999999975443310000012211 0 11222211
Q ss_pred --ccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 113 --ETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 --~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
..+|||++=+--. .--.+.++.+++.|.+.|+.-+-+-...+..++.
T Consensus 316 ~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L 365 (454)
T PTZ00079 316 PWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF 365 (454)
T ss_pred cccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 2467777654322 2233566677788999999834333333333333
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.2 Score=42.58 Aligned_cols=90 Identities=7% Similarity=0.029 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCC-CC--e------EEcCccc-------cccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK-GG--T------EHLGLPV-------FNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~-~G--~------ei~GvPV-------y~sl~e~~~~~~~DVa 119 (181)
.++|+|.|+||-.|+.+++.+.+. +.+|++. |... .. . ...++.. ...+.++....++|++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~-d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL-DKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE-eCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 468999999999999999988885 6787753 3210 00 0 0012221 1134444433479998
Q ss_pred EEeeChH------------------HHHHHHHHHHHcC-CCEEEEeCC
Q 030220 120 VIYVPPP------------------FAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 120 IdfVPp~------------------~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
|-+.... ....+++.|.+.| ++.+|.+++
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8665321 1234556666667 777776564
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=1 Score=39.82 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=57.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCC---CCeEE--------cC----ccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKK---GGTEH--------LG----LPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~---~G~ei--------~G----vPVy~sl~e~~~~~~~DVaI 120 (181)
+..||+|+|+ |.+|+.+...+...| .+ +..+|... .|... .+ +..+.+.+ ..+ ++|++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEEE
Confidence 3468999999 999998887777767 45 33455332 12111 11 22334566 345 799999
Q ss_pred Eee--Ch--------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 121 IYV--PP--------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 121 dfV--Pp--------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++. |. ....+.++...+.+-+.++++.+.
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998 22 557788888888888885555554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.4 Score=42.59 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+|+|.|++|.+|+.+++.+.+.|.+|+. ++..... .. . ..+++-...++ -+..|.+.++.+.++++++.
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl-~~r~~~~--~~--~---~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVL-ADLDEEA--AE--A---AAAELGGPDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEE-EeCCHHH--HH--H---HHHHHhccCcEEEEEecCCCHHHHHHHHHHHH
Confidence 367899999999999999999999998763 3432211 00 0 01111110122 34557778888888888776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..||. ..|+
T Consensus 494 ~~~g~iDvvI~-~AG~ 508 (681)
T PRK08324 494 LAFGGVDIVVS-NAGI 508 (681)
T ss_pred HHcCCCCEEEE-CCCC
Confidence 55 6888888 6663
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.8 Score=35.45 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.+|+. ++.+.. .. ..+.+.+++. +++ +-.|.+.++.+.++++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~-~~r~~~--~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVI-TGRTKE--KL------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeCCHH--HH------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999998764 333221 01 0111111111 122 334677888888888887
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|+ ..|
T Consensus 73 ~~~~~~id~lI~-~ag 87 (252)
T PRK07677 73 DEKFGRIDALIN-NAA 87 (252)
T ss_pred HHHhCCccEEEE-CCC
Confidence 764 5778887 444
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.7 Score=35.05 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC-eEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~-~IVa 87 (181)
..+|+|.|++|..|+.+++.+.+.|. +++.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~ 36 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYA 36 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEE
Confidence 45799999999999999999999998 6553
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.5 Score=35.04 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=51.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.++++. +.... .++++.+.. ++. +..|...++...+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~-~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAAT-VRRPD-----------ALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCCHH-----------HHHHHHHhccCceEEEEccCCCHHHHHHHHHHH
Confidence 469999999999999999999989887643 22210 112221111 222 346777788788887777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. ..|.
T Consensus 71 ~~~~~~id~vi~-~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVS-NAGY 86 (276)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 654 5777777 5554
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=1 Score=36.88 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=53.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .. .+.+.+.+.....++ -+-.|...++.+..+++++.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~-~~r~~~~--~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAV-ADINSEK--AA--NVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999998764 4433211 10 111111111000112 244577788888888888766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|.
T Consensus 78 ~~~~id~vv~-~ag~ 91 (259)
T PRK12384 78 IFGRVDLLVY-NAGI 91 (259)
T ss_pred HcCCCCEEEE-CCCc
Confidence 4 6777887 5554
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=1 Score=37.28 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=52.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC---cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~---DVaIdfVPp~~a~~~~~e 134 (181)
.++++|.|+++..|+.+++.+.+.|.+++....+... ... ...+++...... -+.+|++.++.+.+.+++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE--EAN-----KIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH--HHH-----HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3568899999999999999999999997743232211 110 011111111111 234577888888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
..+. ++..+|+ ..|
T Consensus 81 ~~~~~g~id~lv~-nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFIS-NAI 96 (260)
T ss_pred HHHhcCCccEEEE-Ccc
Confidence 7764 5777776 444
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.8 Score=35.66 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|-+|+.+++.+.+.|.+++....+.. ... . ..+.+.++... +. +-.|...++.+.++++++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEE-EQD-----A-AEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcc-hHH-----H-HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999764311111 000 0 11122222111 21 234677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 129 ~~~~g~iD~lV~-nAg~ 144 (300)
T PRK06128 129 VKELGGLDILVN-IAGK 144 (300)
T ss_pred HHHhCCCCEEEE-CCcc
Confidence 764 6888887 5554
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.4 Score=41.20 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=53.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+..+|+|+|+ |-+|....+..+..|.+.|..++......+. ....+++.-++ ....+|++++++......+.+.++
T Consensus 144 ~~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCCHHHHHHHHHh
Confidence 3456999997 9999999998888999866566544321111 11223332221 223689999999987665666666
Q ss_pred HHcCCCEE
Q 030220 136 MEAELDLV 143 (181)
Q Consensus 136 ie~GIk~I 143 (181)
+..|=+.+
T Consensus 221 l~~~G~iv 228 (308)
T TIGR01202 221 LAKGGEIV 228 (308)
T ss_pred hhcCcEEE
Confidence 66654444
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.45 E-value=1 Score=39.91 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=28.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++.++
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 467999999999999999999999999876543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.2 Score=36.24 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++ .++..... .. .. .+++ ++. ++. +..|...++...+.+++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~-~~~r~~~~--~~--~~---~~~~-~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVV-VADRDAAG--GE--ET---VALI-REAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHH-HhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999999866 44443211 11 11 1221 111 222 34667778878887777
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 78 ~~~~~g~id~li~-~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFN-NAGI 94 (253)
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 7654 5777877 5554
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.7 Score=47.25 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=26.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..+|..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 478999999 9999999999988887644444443
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.7 Score=35.04 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=50.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+|+|.|++|.+|+.+++.+.+.|.+++. ++.... . ++++.+.. ++ -+-.|+..++...+.++.+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~-~~r~~~--~---------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVA-TARDTA--T---------LADLAEKYGDRLLPLALDVTDRAAVFAAVETA 71 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEE-EECCHH--H---------HHHHHHhccCCeeEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999988988664 332211 0 11111110 11 1345677788888877776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|. ..|.
T Consensus 72 ~~~~~~~d~vi~-~ag~ 87 (275)
T PRK08263 72 VEHFGRLDIVVN-NAGY 87 (275)
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 653 6777777 6664
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.8 Score=35.49 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh---ccCCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA---ETKAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~---~~~~D-VaIdfVPp~~a~~~~~ 133 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+... . -...+++.+ ..++. +..|...++.+.+.++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVAL-ADLDAAL--A-----ERAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 356999999999999999999999999764 3432211 0 001112111 01122 3456777888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~li~-~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVN-NAGI 96 (260)
T ss_pred HHHHHhCCCcEEEE-CCCc
Confidence 87765 5777887 5664
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.4 Score=36.19 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|-+|+.+++.+.+.|.+++. ++.+... .. ...+++....+++ +.+|.+.++.+.+.+++..+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~-~~r~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGL-VARRTDA--LQ-----AFAARLPKAARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH-----HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998998764 3432210 10 0011111100222 44677888888888888765
Q ss_pred c-C-CCEEEEeCCCC
Q 030220 138 A-E-LDLVVCITEGI 150 (181)
Q Consensus 138 ~-G-Ik~IV~iTtG~ 150 (181)
. | +..+|+ ..|+
T Consensus 75 ~~g~id~lv~-~ag~ 88 (257)
T PRK07024 75 AHGLPDVVIA-NAGI 88 (257)
T ss_pred hCCCCCEEEE-CCCc
Confidence 4 4 677777 6564
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.4 Score=35.98 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=52.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... .+....+.+.- .++ -+-.|+..++.....++++.+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~-~~r~~~~-----~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVI-FGRSAPD-----DEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEE-EcCChhh-----HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999998764 3322211 12211221111 122 244567777777887877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..++. ..|.
T Consensus 80 ~~~~id~vi~-~ag~ 93 (258)
T PRK08628 80 KFGRIDGLVN-NAGV 93 (258)
T ss_pred hcCCCCEEEE-CCcc
Confidence 4 6788887 5564
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.6 Score=35.68 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++..... .. .+.+.+++.- .++ -+..|...++...+.++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~~--~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAI-AARHLDA--LE--KLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCCHHH--HH--HHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999764 3322110 10 0111111110 112 24467788888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 82 ~~~g~id~lv~-~ag~ 96 (253)
T PRK05867 82 AELGGIDIAVC-NAGI 96 (253)
T ss_pred HHhCCCCEEEE-CCCC
Confidence 65 6888887 5554
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.2 Score=36.08 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=51.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|..|+.+++.+.+.|.+++. ++..... . -...+.+.+... ++ -+-.|...++...+.+++..
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~-~~r~~~~--~--~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAV-FDLNREA--A--EKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-ecCCHHH--H--HHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999988764 3332211 0 011111221111 12 13456667777777777766
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 76 ~~~~~~d~vi~-~ag 89 (250)
T TIGR03206 76 QALGPVDVLVN-NAG 89 (250)
T ss_pred HHcCCCCEEEE-CCC
Confidence 54 5777776 444
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.1 Score=39.45 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCC---CeE--E---------c-CccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--H---------L-GLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~---G~e--i---------~-GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||.|+|+ |.||..++..+...|. +++ .+|.... |.. + . -+....+.++ .+ ++|++|++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEEEc
Confidence 58999999 9999988888877664 644 4453211 110 0 1 1222346666 34 78999999
Q ss_pred eCh----------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 VPP----------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 VPp----------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
++. +.+.++++...+++-+.++++.
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~ 117 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV 117 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 882 4556677777777766654433
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.8 Score=34.21 Aligned_cols=83 Identities=25% Similarity=0.252 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+++|.|++|.+|+.+++.+.+.|.+++.. +.... +.. .+ .+++.+. .++. +..|...++.+.+.++++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~-~r~~~--~~~--~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVG-ARRQA--ELD--QL---VAEIRAEGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEE-eCCHH--HHH--HH---HHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 569999999999999999999999997643 33221 111 01 1111110 0121 3357778888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 79 ~~~~~id~li~-~ag~ 93 (254)
T PRK07478 79 ERFGGLDIAFN-NAGT 93 (254)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 65 6888887 5554
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.4 Score=44.96 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=62.2
Q ss_pred cccccCCCCCeeeccCCceEEEEccCC-CCcchh---------hHHHHHhCCeEee-ecCCCCCCeEE--cC----cccc
Q 030220 42 YGSSAAASHPAVFVDKNTRVICQGITG-KNGTFH---------TEQAIEYGTKMVG-GVTPKKGGTEH--LG----LPVF 104 (181)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~rViVvGatG-kmG~~~---------~k~~~~~g~~IVa-gVdP~~~G~ei--~G----vPVy 104 (181)
|-|.|...-.-.......||+|.|+.. ++|+.+ ++.+.+.|++++. .-||....... .+ -|.+
T Consensus 538 ~y~~~~~~~~~~~~~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~ 617 (1050)
T TIGR01369 538 LYSTYEGERDDVPFTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLT 617 (1050)
T ss_pred eEecCCCCCCcccCCCCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCC
Confidence 345676542223344557899999832 367733 7777888999663 34454322111 11 1322
Q ss_pred c-cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEE
Q 030220 105 N-SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 105 ~-sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~I 143 (181)
- .+.++.+++++|.+|.......+..+++.+-+.|++.+
T Consensus 618 ~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i~ 657 (1050)
T TIGR01369 618 FEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPIL 657 (1050)
T ss_pred HHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcEE
Confidence 2 35556667789998877766777778888888888754
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.71 Score=45.68 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=47.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeEEc----------CccccccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHL----------GLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~ei~----------GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
+.+|+|+|+ | .|+.+...+...|. +|. .+|......... |.|=-...++.+.+.++++-|...+.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 477999999 8 99999998888774 333 344433221000 11000012333333445555555555
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
..-.+++++.++ ++..|+.-+..|....
T Consensus 184 ~i~~~n~~~~l~-~~DlVvD~~D~~~~R~ 211 (722)
T PRK07877 184 GLTEDNVDAFLD-GLDVVVEECDSLDVKV 211 (722)
T ss_pred cCCHHHHHHHhc-CCCEEEECCCCHHHHH
Confidence 444444444442 3555555455544443
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=2 Score=38.81 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=56.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++...... .+++..++.+. -+.+|...++.+.+.++...
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~-~~~~~~~~---------~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVC-LDVPAAGE---------ALAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEE-EeCCccHH---------HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999774 33321111 12222222222 34568888888888888877
Q ss_pred Hc--CCCEEEEeCCCCC
Q 030220 137 EA--ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~--GIk~IV~iTtG~~ 151 (181)
+. ++..+|. ..|+.
T Consensus 280 ~~~g~id~vi~-~AG~~ 295 (450)
T PRK08261 280 ERHGGLDIVVH-NAGIT 295 (450)
T ss_pred HhCCCCCEEEE-CCCcC
Confidence 65 5888888 66653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.1 Score=36.70 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. ++..... . -.....+.+.- .++. +..|...++.+.+.++++.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~-~~r~~~~--~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAI-VDYNEET--A--QAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--H--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999999998763 3432210 0 01111111110 0121 34577888888898888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 76 ~~~~id~vi~-~ag~ 89 (256)
T PRK08643 76 TFGDLNVVVN-NAGV 89 (256)
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 6888887 6654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.3 Score=39.19 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=56.6
Q ss_pred ceEEEEccCCCCcchhhHHHHH-h--CCeEee-ecCCCCCCeE--E-c-C--cccc----ccHHHHhhccCCcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-Y--GTKMVG-GVTPKKGGTE--H-L-G--LPVF----NSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~--g~~IVa-gVdP~~~G~e--i-~-G--vPVy----~sl~e~~~~~~~DVaIdfVP 124 (181)
+||+|+|++|+.|+.++..+.. . +.+++. ..++...|.. + + + ..|. +++.+.++ ++|++|++.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcCC
Confidence 4799999999999988876644 2 334443 2334332311 1 1 1 2232 35555555 7999998864
Q ss_pred h----------------HHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 125 P----------------PFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 125 p----------------~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
. ..+.+.++.+.+++.+.++++++.
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3 156677788888899998886655
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=2 Score=35.36 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++ .++.+.. ... .+ .+++....++. +-.|...++.+.+..+...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~-~~~r~~~--~~~--~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLL-LVGRNAE--KLE--AL---AARLPYPGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEECCHH--HHH--HH---HHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 45699999999999999999999999866 3443321 110 00 11110001122 3456777777777776665
Q ss_pred Hc-CCCEEEEeCCCCC
Q 030220 137 EA-ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~-GIk~IV~iTtG~~ 151 (181)
+. ++..+|. ..|..
T Consensus 77 ~~~~id~lv~-~ag~~ 91 (263)
T PRK09072 77 EMGGINVLIN-NAGVN 91 (263)
T ss_pred hcCCCCEEEE-CCCCC
Confidence 43 5667776 66653
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.6 Score=38.30 Aligned_cols=107 Identities=14% Similarity=0.018 Sum_probs=68.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCC---CCC----eEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPK---KGG----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~---~~G----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+++|+|.|.| .-++.+.+.+...+ ..++.-.... ..+ ..+.|.==..-+.++++++++|++||.++|-+++
T Consensus 2 ~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~ 80 (257)
T COG2099 2 MMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAAR 80 (257)
T ss_pred CceEEEEecc-HHHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHH
Confidence 5789999984 46778888888765 4444322111 000 1112222223488889999999999999998874
Q ss_pred ---HHHHHHHHcCCCEEEEeCCC--------CCHHHHHHHHHHhhhh
Q 030220 130 ---AAIMEAMEAELDLVVCITEG--------IPQHDMVINFTRVNIL 165 (181)
Q Consensus 130 ---~~~~eaie~GIk~IV~iTtG--------~~~ed~~~l~~~ak~i 165 (181)
.+++-|-+.||+.+.--=.+ +.++|+.++.+++++.
T Consensus 81 iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~ 127 (257)
T COG2099 81 ISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL 127 (257)
T ss_pred HHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence 67788888999987432222 2346677777776655
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.52 Score=38.02 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=45.5
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCCCeEEcC--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~G~ei~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
....+|++.|| |.-|......+-- .....+.+.||.+.|....| +||.+. +++.+ .++|.+++ .+.....++
T Consensus 66 ~~gk~I~~yGA-~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p-~~l~~-~~pd~viv-law~y~~EI 141 (160)
T PF08484_consen 66 AEGKRIAGYGA-GAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSP-EELKE-RKPDYVIV-LAWNYKDEI 141 (160)
T ss_dssp HTT--EEEE----SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEG-GG--S-S--SEEEE-S-GGGHHHH
T ss_pred HcCCEEEEECc-chHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCH-HHHhh-CCCCEEEE-cChhhHHHH
Confidence 45577999999 6677765554433 12445557789999966654 999964 44443 47998877 457777777
Q ss_pred HHH---HHHcCCCEEEE
Q 030220 132 IME---AMEAELDLVVC 145 (181)
Q Consensus 132 ~~e---aie~GIk~IV~ 145 (181)
.+. ..+.|-+-|+-
T Consensus 142 ~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 142 IEKLREYLERGGKFIVP 158 (160)
T ss_dssp HHHTHHHHHTT-EEEE-
T ss_pred HHHHHHHHhcCCEEEEe
Confidence 644 44677777764
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.6 Score=35.44 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=46.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|.+|+.+++.+.+.|.+|+. ++..... .++++.+.. ++ -+..|...++...+.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~-~~r~~~~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVIS-ISRTENK----------ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEE-EeCCchH----------HHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 46999999999999999999999998764 3432210 122222211 22 2456778888888888887
Q ss_pred HHc
Q 030220 136 MEA 138 (181)
Q Consensus 136 ie~ 138 (181)
.+.
T Consensus 71 ~~~ 73 (251)
T PRK06924 71 LSS 73 (251)
T ss_pred HHh
Confidence 653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=4.4 Score=33.29 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCceEEEEccCC-CCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITG-KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatG-kmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~e 134 (181)
+..+++|.|++| .+|+.+++.+.+.|.+|+. ++.+... .. .....+++.....++ -+-.|...++.+.+++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVI-SDIHERR--LG--ETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEE-EeCCHHH--HH--HHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 346799999987 6999999999999999663 4433211 10 011111110000122 233577788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 91 ~~~~~g~id~li~-~ag~ 107 (262)
T PRK07831 91 AVERLGRLDVLVN-NAGL 107 (262)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8765 5777777 6665
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.97 Score=37.66 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
+.+++|.|++|-+|+.+++.+.+.|.+++. ++..... .. ...+++.. .+.+ +..|...++.+.++++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~-~~r~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVL-ADVQQDA--LD-----RAVAELRA-QGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEE-EeCChHH--HH-----HHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 357999999999999999999999998763 3432211 00 01122211 1222 34567778888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+++ ..|+
T Consensus 77 ~~~~~g~id~vi~-~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFN-NAGV 93 (287)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7654 5788887 5555
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=91.08 E-value=2.2 Score=34.97 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+++|.|++|.+|+.+++.+.+.|.+++. ++..... .. ...++. . .++. +-.|...++...+.++++.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~-~~~~~~~--~~-----~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVL-ADLDRER--GS-----KVAKAL-G-ENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEE-EcCCHHH--HH-----HHHHHc-C-CceEEEEccCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998988764 3322210 00 001111 1 1121 35667778888888887766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. .+..+|. ..|+
T Consensus 81 ~~g~id~li~-~ag~ 94 (255)
T PRK05717 81 QFGRLDALVC-NAAI 94 (255)
T ss_pred HhCCCCEEEE-CCCc
Confidence 4 4778887 4554
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.96 Score=36.87 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.+|+|.|++|..|..+++.+.+.|.+++ .++..... .. ...+++.+. .++ -+-+|....+.+.++++++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi-~~~r~~~~--~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVI-VSSRKLDG--CQ-----AVADAIVAAGGKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCCHHH--HH-----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999877 44443211 10 111222111 011 24456777788888888877
Q ss_pred Hc--CCCEEEEeCC
Q 030220 137 EA--ELDLVVCITE 148 (181)
Q Consensus 137 e~--GIk~IV~iTt 148 (181)
+. .+..+|+.+.
T Consensus 81 ~~~~~id~li~~ag 94 (252)
T PRK07035 81 ERHGRLDILVNNAA 94 (252)
T ss_pred HHcCCCCEEEECCC
Confidence 64 4788887443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=91.07 E-value=2.3 Score=32.19 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie~ 138 (181)
.++|.|+++.+|+.+++.+.+.|...|..+.++....... .....+++.-. ++. +-.|+..++.+..+++++.+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~--~l~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQ--ELIQELKAPGA--KITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH--HHHHHHHHTTS--EEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccc--ccccccccccc--ccccccccccccccccccccccccc
Confidence 5889999999999999999998777665666551000010 11122221111 222 335678889999999999955
Q ss_pred --CCCEEEEeCCCCC
Q 030220 139 --ELDLVVCITEGIP 151 (181)
Q Consensus 139 --GIk~IV~iTtG~~ 151 (181)
.+..+|+.+..+.
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 5677777443333
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.3 Score=33.55 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 91 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP 91 (181)
+++|.|++|.+|+.+++.+.+. .+++. +++
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~-~~r 31 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVIT-AGR 31 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEE-Eec
Confidence 6899999999999999998887 66663 443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.85 Score=39.01 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+|+|.|++|.+|+.+++.+.+.|.+|+. ++.+... .. .+ .+++.+. .+++ +..|...++.+.+++++..
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~-~~R~~~~--l~--~~---~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVA-VARREDL--LD--AV---ADRITRAGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999774 3332211 10 01 1111110 0111 3356677888888888776
Q ss_pred Hc--CCCEEEEeCCCCC
Q 030220 137 EA--ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~--GIk~IV~iTtG~~ 151 (181)
+. ++..+|+ ..|+.
T Consensus 113 ~~~g~id~li~-~AG~~ 128 (293)
T PRK05866 113 KRIGGVDILIN-NAGRS 128 (293)
T ss_pred HHcCCCCEEEE-CCCCC
Confidence 64 6888887 66654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.7 Score=35.96 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .. .+ .+++... .++ -+..|+..++...+.+++..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLAL-ADVNEEG--GE--ET---LKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999998764 3322110 00 01 1111110 111 134567777777777766655
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|. ..|.
T Consensus 74 ~~~~id~lI~-~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVN-NAGV 87 (270)
T ss_pred HcCCCCEEEE-CCCC
Confidence 3 6788887 5554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.29 Score=44.19 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC------eEE--cCccccc-c-HHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------TEH--LGLPVFN-S-VAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G------~ei--~GvPVy~-s-l~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |+.|...++.+.+.|.+|. ++|+.... .++ .|+.++. + .++... ++|++|..+-...
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCCC
Confidence 467999999 7799999999999999876 56664311 001 1444432 2 223333 6888887665444
Q ss_pred HHHHHHHHHHcCCCE
Q 030220 128 AAAAIMEAMEAELDL 142 (181)
Q Consensus 128 a~~~~~eaie~GIk~ 142 (181)
....+.+|.+.|++.
T Consensus 81 ~~~~~~~a~~~~i~~ 95 (450)
T PRK14106 81 DSPPVVQAHKKGIEV 95 (450)
T ss_pred CCHHHHHHHHCCCcE
Confidence 445556666666543
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.8 Score=38.43 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecC--CCCC-Ce--------EEcC--cccc--ccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GT--------EHLG--LPVF--NSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVd--P~~~-G~--------ei~G--vPVy--~sl~e~~~~~~~DVaIdf 122 (181)
.||+|+|+ |.+|..+...+...|+ + +..+| +.+. ++ ...+ ..|. .+.++ .+ ++|++|++
T Consensus 7 ~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~--~aDiVI~t 81 (321)
T PTZ00082 7 RKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA--GSDVVIVT 81 (321)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC--CCCEEEEC
Confidence 68999998 9999988777766675 6 33444 4421 10 0111 2233 45654 45 79999996
Q ss_pred e---------------------ChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 V---------------------PPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 V---------------------Pp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
. ......+.++++.+.+-+.++.+.+.
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5 33446777788888887754444543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=4 Score=33.35 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=53.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|-+|+.+++.+.+.|.+++. ++.... .. . ..+++.+ ...+ +..|...++.+.++++++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~-~~r~~~---~~--~---~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVL-VDRSEL---VH--E---VAAELRA-AGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCchH---HH--H---HHHHHHh-cCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 56899999999999999999999999773 443210 00 1 1122211 1222 345778888888888888
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|. ..|
T Consensus 79 ~~~~~~id~lv~-nAg 93 (260)
T PRK12823 79 VEAFGRIDVLIN-NVG 93 (260)
T ss_pred HHHcCCCeEEEE-CCc
Confidence 764 5777777 555
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.4 Score=36.39 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|-+|+.+++.+.+.|.+|+. ++..... ++++.++. ++ -+-.|...++.+.+.+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAV-LERSAEK-----------LASLRQRFGDHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH-----------HHHHHHHhCCcceEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999999999764 3432211 11111111 12 234566777788888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 74 ~~~~~g~id~li~-~ag~ 90 (263)
T PRK06200 74 TVDAFGKLDCFVG-NAGI 90 (263)
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7765 5777877 6665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.98 Score=40.62 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCC---eEEcCcccc-cc---HHHHhh--ccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG---TEHLGLPVF-NS---VAEAKA--ETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G---~ei~GvPVy-~s---l~e~~~--~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |+.|+.+++.+.+.|.+++. ..||.... .+..+++++ .+ .+.+.+ -.++|++|..++.+.
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 577999999 99999999998888888653 23444311 011245443 22 222211 127899988887654
Q ss_pred HHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 128 AAA-AIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 128 a~~-~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..- .+..|-+.|++.|+..+. +.++...++++
T Consensus 310 ~n~~~~~~~~~~~~~~ii~~~~--~~~~~~~~~~~ 342 (453)
T PRK09496 310 ANILSSLLAKRLGAKKVIALVN--RPAYVDLVEGL 342 (453)
T ss_pred HHHHHHHHHHHhCCCeEEEEEC--CcchHHHHHhc
Confidence 333 333455667776665332 33344444443
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.5 Score=35.07 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
...++|.|++|-+|+.+++.+.+.|.+++. ++..... . ..+.+-+++...+ +-.|...++.+.+.+++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~-~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAI-LDRNQEK--A------EAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 356889999999999999999999998764 4443211 1 1111111111112 34566677778877777
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 81 ~~~~~g~id~li~-~ag 96 (278)
T PRK08277 81 ILEDFGPCDILIN-GAG 96 (278)
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 7664 6788887 555
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.56 Score=43.03 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=49.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------EEcCccccc--cHHHHhhccCCcEEEEeeCh-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPVFN--SVAEAKAETKANASVIYVPP-P 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp-~ 126 (181)
..||.|+|. |+-|...++.+.+.|+++. +.|.+.... +-.|+.++. ...+.++ ++|++|.. |. .
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~dlVV~S-pgi~ 88 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD--GFDVIFKT-PSMR 88 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc--cCCEEEEC-CCCC
Confidence 368999999 9999999999999999866 455432110 113666653 2233344 67866554 31 1
Q ss_pred HHHHHHHHHHHcCCCE
Q 030220 127 FAAAAIMEAMEAELDL 142 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~ 142 (181)
.....+..|.+.||+.
T Consensus 89 ~~~p~~~~a~~~~i~i 104 (458)
T PRK01710 89 IDSPELVKAKEEGAYI 104 (458)
T ss_pred CCchHHHHHHHcCCcE
Confidence 2235666777777764
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=2.4 Score=35.11 Aligned_cols=85 Identities=11% Similarity=0.133 Sum_probs=49.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
..++|.|++|.+|+.+++.+.+.|.+|++. +..... .. .+...+.+.....++. +-.|...++.+.+ ++++.+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~-~r~~~~--~~--~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIAT-MRNPEK--QE--NLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEE-eCCHHH--HH--HHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHH
Confidence 458999999999999999999999998754 222111 00 0111111110001222 2457777888877 777665
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..||. ..|.
T Consensus 78 ~~~~id~vv~-~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVN-NAGY 91 (280)
T ss_pred hcCCeeEEEE-CCcc
Confidence 4 4666766 5554
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.61 Score=40.20 Aligned_cols=83 Identities=25% Similarity=0.248 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----cCcccc-------ccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----LGLPVF-------NSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||+|.|.| ..|+.+++.+.+.|. ++..|.-..+++.. .+++|. +.++++++++++|++||.++|-+
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 579999984 578899999999886 44433322222111 122332 25788888889999999999966
Q ss_pred H---HHHHHHHHHcCCCEE
Q 030220 128 A---AAAIMEAMEAELDLV 143 (181)
Q Consensus 128 a---~~~~~eaie~GIk~I 143 (181)
. +.+.+-|-+.||+.+
T Consensus 79 ~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 79 AEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHhhcCcceE
Confidence 4 466677778899987
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.075 Score=43.47 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHH--HHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFA--AAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a--~~~~~e 134 (181)
++++|+|+ |+.|+-+++.+...|.+ +|..+||-+.-+ -..|+.|- +++|+.+ +.|+.|-.+-...+ .+..+.
T Consensus 24 k~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~--~adi~vtaTG~~~vi~~e~~~~ 99 (162)
T PF00670_consen 24 KRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALR--DADIFVTATGNKDVITGEHFRQ 99 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTT--T-SEEEE-SSSSSSB-HHHHHH
T ss_pred CEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHh--hCCEEEECCCCccccCHHHHHH
Confidence 56999999 99999999999999998 666788854221 12688875 6888887 78998887776554 222222
Q ss_pred HHHcCCCEEEEeCCCCCHH-HHHHHHHHh
Q 030220 135 AMEAELDLVVCITEGIPQH-DMVINFTRV 162 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~e-d~~~l~~~a 162 (181)
..=..|++-..+|+.| |+..|++.+
T Consensus 100 ---mkdgail~n~Gh~d~Eid~~~L~~~~ 125 (162)
T PF00670_consen 100 ---MKDGAILANAGHFDVEIDVDALEANA 125 (162)
T ss_dssp ---S-TTEEEEESSSSTTSBTHHHHHTCT
T ss_pred ---hcCCeEEeccCcCceeEeeccccccC
Confidence 2334566657777766 566666663
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=35.18 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++....... . ... .+ .+++ ++...+ +-.|+..++.+.+.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~-~~~--~~---~~~l-~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-E-AAE--NL---VNEL-GKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-H-HHH--HH---HHHH-HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 457999999999999999999999999875333221 1 010 01 1222 111122 34566777788888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..|+. ..|+
T Consensus 78 ~~~~~~~id~vi~-~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVN-NAGI 94 (247)
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7764 3677777 5665
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.7 Score=38.86 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=56.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEe-eecCCCCCCeEE------cCccccc-----cHHHHhhccCCcEEEEe
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMV-GGVTPKKGGTEH------LGLPVFN-----SVAEAKAETKANASVIY 122 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IV-agVdP~~~G~ei------~GvPVy~-----sl~e~~~~~~~DVaIdf 122 (181)
+..||.|+|++|+.|+.....+...+. +++ .++++ ..|... ....+.. ++.+..+ ++|++|++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~--~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALK--GADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcC--CCCEEEEe
Confidence 346899999999999988887765433 333 24444 333111 0123332 2355556 79999987
Q ss_pred eC----------------hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VP----------------PPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VP----------------p~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
.- ...+.+.++.+.+++...++.+.+.
T Consensus 94 AG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN 136 (323)
T PLN00106 94 AGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN 136 (323)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 53 2345677788888898887765554
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=2 Score=36.23 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. ++.+... . . ...+++ +....+ +..|...++.+.++++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~-~~r~~~~--l---~--~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVL-GDVDKPG--L---R--QAVNHL-RAEGFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H---H--HHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999763 3322211 1 0 011222 111222 346778888899888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 78 ~~~~g~id~li~-nAg~ 93 (275)
T PRK05876 78 FRLLGHVDVVFS-NAGI 93 (275)
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 765 4777777 6664
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.1 Score=34.64 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-+|+..++.+.+.|.+++. ++..... ... + .+++.+. .++ -+..|...++...+...+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~-~~r~~~~--~~~--~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVV-ADINAEG--AER--V---AKQIVADGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HHH--H---HHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 356999999999999999999999998774 4433211 000 1 1111111 012 2345666677777777766
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..|+. +.|+
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (250)
T PRK07774 78 VSAFGGIDYLVN-NAAI 93 (250)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 544 4777887 6665
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.84 Score=37.82 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=52.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.+++|.|++|..|+.+++.+.+.|.+++. ++..... .. +....+.+.....++. +..|...++.+.+.++++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMI-VGRNPDK--LA--AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE-EeCCHHH--HH--HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998764 4433211 11 1111111110001111 2246677888888888877
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..++. ..|
T Consensus 82 ~~~~~~d~li~-~ag 95 (276)
T PRK05875 82 AWHGRLHGVVH-CAG 95 (276)
T ss_pred HHcCCCCEEEE-CCC
Confidence 65 6777777 544
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.1 Score=36.48 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=48.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|..|+.+++.+.+.|.++++ ++..... .. .....+.+... .+++ +-.|...++...+.++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~-~~r~~~~--~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYL-AARDVER--LE--RLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEE-EeCCHHH--HH--HHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhh
Confidence 57999999999999999999999998664 3433211 10 11111111000 0111 22344556666677666654
Q ss_pred cCCCEEEEeCCCC
Q 030220 138 AELDLVVCITEGI 150 (181)
Q Consensus 138 ~GIk~IV~iTtG~ 150 (181)
.+..+++ ..|.
T Consensus 76 -~~d~vv~-~ag~ 86 (243)
T PRK07102 76 -LPDIVLI-AVGT 86 (243)
T ss_pred -cCCEEEE-CCcC
Confidence 4677776 5443
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.1 Score=38.68 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=53.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC-eEee-ecCCCCCCeE---E------c--Ccccc--ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVG-GVTPKKGGTE---H------L--GLPVF--NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~-~IVa-gVdP~~~G~e---i------~--GvPVy--~sl~e~~~~~~~DVaIdf 122 (181)
++||+|+|+ |.+|..+...+...|. +++- ++++.+.... + . ...+. .+.++ .+ ++|++|++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~--~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IA--GSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HC--CCCEEEEC
Confidence 468999999 9999988887777654 6542 3444332111 0 0 11222 24543 44 78999988
Q ss_pred eC--h--------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 123 VP--P--------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 123 VP--p--------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+. . +...+.+++..+.+-+.++++.+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 52 2 55777777777777776444343
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.36 E-value=3.5 Score=33.40 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=48.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|..|+.+++.+.+.|.++++. +... ++... .++ -+-.|+..++...+.++++.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~-~~~~-------~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGF-DQAF-------LTQED--------YPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-ecch-------hhhcC--------CceEEEEecCCCHHHHHHHHHHHH
Confidence 3579999999999999999999999987754 2221 00000 011 13345667777777777766
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..++. ..|.
T Consensus 72 ~~~~~id~vi~-~ag~ 86 (252)
T PRK08220 72 AETGPLDVLVN-AAGI 86 (252)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 3667776 4444
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.2 Score=45.78 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccc--cccHHHHhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPV--FNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+..+|+|+|+ |.||+.+++.+...|.+-|..+|+.... ... .|..+ +.++.+.+. ++|++|.+++....
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVI~aT~s~~~ 255 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALA--EADIVISSTGAPHP 255 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhc--cCCEEEECCCCCCc
Confidence 4478999999 9999999999988888533344543211 111 12222 235555555 79999999985543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.9 Score=35.86 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
..+++|.|++|-+|..+++.+.+.|.+|+.. +.+... .. .+ .+++.. ..++. +..|...++.+.+++++.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~-~r~~~~--~~--~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMA-CRNLKK--AE--AA---AQELGIPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEE-ECCHHH--HH--HH---HHHhhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 4569999999999999999999999887743 332110 00 00 111100 01222 346778888888888886
Q ss_pred HHcC--CCEEEEeCCCC
Q 030220 136 MEAE--LDLVVCITEGI 150 (181)
Q Consensus 136 ie~G--Ik~IV~iTtG~ 150 (181)
.+.+ +..+|+ ..|+
T Consensus 78 ~~~~~~iD~li~-nAg~ 93 (322)
T PRK07453 78 RALGKPLDALVC-NAAV 93 (322)
T ss_pred HHhCCCccEEEE-CCcc
Confidence 6654 888887 5553
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.98 Score=37.57 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCccccc-cH-HHHhhccCCcEEEEeeChH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN-SV-AEAKAETKANASVIYVPPP-FA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~GvPVy~-sl-~e~~~~~~~DVaIdfVPp~-~a 128 (181)
..+|+|+|+ |+.|..-++.+.+.|.+|. .|+|.... ++ ..+.... +. .+.++ ++|++|..+... .-
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~~~-~l~~l~~~~~i~~~~~~~~~~dl~--~~~lVi~at~d~~ln 83 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEELES-ELTLLAEQGGITWLARCFDADILE--GAFLVIAATDDEELN 83 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCCCH-HHHHHHHcCCEEEEeCCCCHHHhC--CcEEEEECCCCHHHH
Confidence 468999999 9999998999999998865 66776532 11 1222211 11 22234 689988888776 55
Q ss_pred HHHHHHHHHcCCCE
Q 030220 129 AAAIMEAMEAELDL 142 (181)
Q Consensus 129 ~~~~~eaie~GIk~ 142 (181)
..+..+|-+.|+..
T Consensus 84 ~~i~~~a~~~~ilv 97 (205)
T TIGR01470 84 RRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHcCCEE
Confidence 67888888888765
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=3.5 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEE-EEe--eChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS-VIY--VPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVa-Idf--VPp~~a~~~~~ 133 (181)
+..+|+|.|++|.+|..+++.+.+.|.+++. ++.... ... .....+.+.. ..++.+. .|. ...+...++++
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~-~~r~~~--~~~--~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVIL-LGRTEE--KLE--AVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEE-EeCCHH--HHH--HHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHH
Confidence 5567999999999999999999998988774 443321 110 1111222110 0112111 222 25566777777
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
.+.+. .+..++. ..|.
T Consensus 85 ~~~~~~~~id~vi~-~Ag~ 102 (247)
T PRK08945 85 TIEEQFGRLDGVLH-NAGL 102 (247)
T ss_pred HHHHHhCCCCEEEE-CCcc
Confidence 76654 5777877 5544
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.4 Score=36.32 Aligned_cols=83 Identities=5% Similarity=-0.001 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|+++.+|+.+++.+.+.|.+++. ++.+... .. .++..+.+.- .++ -...|...++.+.+.++++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~-~~r~~~~--l~--~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 77 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLIL-CDQDQSA--LK--DTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEE-EcCCHHH--HH--HHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999774 4443211 10 1111121110 011 12245667888888888887
Q ss_pred Hc---CCCEEEEeC
Q 030220 137 EA---ELDLVVCIT 147 (181)
Q Consensus 137 e~---GIk~IV~iT 147 (181)
+. ++..+|+.+
T Consensus 78 ~~~g~~iD~li~na 91 (227)
T PRK08862 78 QQFNRAPDVLVNNW 91 (227)
T ss_pred HHhCCCCCEEEECC
Confidence 64 478887733
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=2.3 Score=34.46 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=50.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.+++|.|++|.+|+.+++.+.+.|.++++. +.+... .. ..+.+.++.. ++ -+-.|...++...++++++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~-~r~~~~-~~------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVN-YRQKAP-RA------NKVVAEIEAAGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEE-eCCchH-hH------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 579999999999999999999989997753 222110 00 0111111111 11 2344677788777777776
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|. ..|.
T Consensus 79 ~~~~~~~d~vi~-~ag~ 94 (248)
T PRK07806 79 REEFGGLDALVL-NASG 94 (248)
T ss_pred HHhCCCCcEEEE-CCCC
Confidence 554 5676666 4444
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.19 Score=37.05 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE-cCccccc-cHHHHhhccCCcEEEEeeChHHH-HHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFN-SVAEAKAETKANASVIYVPPPFA-AAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei-~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a-~~~~~ 133 (181)
+..+|+|+|. |+.|..-++.+++.|.++. .++|.. . +. .-+.... ..++.++ ++|+++..++.... ..+.+
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~-~-~~~~~i~~~~~~~~~~l~--~~~lV~~at~d~~~n~~i~~ 79 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEI-E-FSEGLIQLIRREFEEDLD--GADLVFAATDDPELNEAIYA 79 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSE-H-HHHTSCEEEESS-GGGCT--TESEEEE-SS-HHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCch-h-hhhhHHHHHhhhHHHHHh--hheEEEecCCCHHHHHHHHH
Confidence 3478999999 9999999999999888855 455552 0 00 1111111 2333344 68999999855444 44555
Q ss_pred HHHHcCCCEE
Q 030220 134 EAMEAELDLV 143 (181)
Q Consensus 134 eaie~GIk~I 143 (181)
+|-+.|+..-
T Consensus 80 ~a~~~~i~vn 89 (103)
T PF13241_consen 80 DARARGILVN 89 (103)
T ss_dssp HHHHTTSEEE
T ss_pred HHhhCCEEEE
Confidence 5555676543
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.92 Score=41.01 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcC--ccccc-------cHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLG--LPVFN-------SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~G--vPVy~-------sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++|+|.|..|-.|+-.+..+++.|+++| .+|--..|- .+.- .+.|. -++++.+++++|.+|-|--...
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~ 79 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS 79 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence 4699999999999999999999999977 444333331 1111 23332 4888888899999998864332
Q ss_pred ------------------HHHHHHHHHHcCCCEEEE
Q 030220 128 ------------------AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 ------------------a~~~~~eaie~GIk~IV~ 145 (181)
....++.+.++||+.+|-
T Consensus 80 VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vF 115 (329)
T COG1087 80 VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIF 115 (329)
T ss_pred cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEE
Confidence 345678888999999874
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.7 Score=36.17 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=52.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|..|+.+++.+.+.|.+++. ++..... .. .....+.+.. .++. +.+|...++.+.+.++++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAV-ASRSQEK--VD--AAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999998764 4443211 11 1111111110 0111 2356777888888888877
Q ss_pred Hc--CCCEEEEe
Q 030220 137 EA--ELDLVVCI 146 (181)
Q Consensus 137 e~--GIk~IV~i 146 (181)
+. ++..+|+.
T Consensus 82 ~~~~~iD~vi~~ 93 (264)
T PRK07576 82 DEFGPIDVLVSG 93 (264)
T ss_pred HHcCCCCEEEEC
Confidence 54 68888873
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.53 Score=43.09 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=47.5
Q ss_pred ccCCceEEEEccCCCCcch-hhHHHHHhCCeEeeecCCCCCC--eEE--cCccccc-cHHHHhhccCCcEEEEeeChHHH
Q 030220 55 VDKNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--TEH--LGLPVFN-SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~-~~k~~~~~g~~IVagVdP~~~G--~ei--~GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+.+..+|.|+|+ |+.|.. +++.+.+.|.++. +.|.+... .++ .|++++. .-.+.++ ++|++|..--=..-
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~--~~d~vv~spgi~~~ 79 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAENIK--DADVVVYSSAIPDD 79 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHHCC--CCCEEEECCCCCCC
Confidence 455678999999 999998 6888888899976 45543211 111 2565542 1122233 56755443211111
Q ss_pred HHHHHHHHHcCCCE
Q 030220 129 AAAIMEAMEAELDL 142 (181)
Q Consensus 129 ~~~~~eaie~GIk~ 142 (181)
...+++|.+.|++.
T Consensus 80 ~~~~~~a~~~~i~i 93 (461)
T PRK00421 80 NPELVAARELGIPV 93 (461)
T ss_pred CHHHHHHHHCCCcE
Confidence 23455556666554
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.55 Score=43.65 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cC--ccccccHHHHhhccCCcEEEEeeChH---H
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG--LPVFNSVAEAKAETKANASVIYVPPP---F 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~---~ 127 (181)
+..+|+|+|+ |.||..+++.+.+.|..-+-..|....- +++ .| +--|+++.+.+. ++|++|..|.+. .
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~--~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALA--EADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhh--hCCEEEEecCCCcccc
Confidence 4678999999 9999999999999997755566755422 111 23 222335666666 799999985433 3
Q ss_pred HHHHHHHHHHc
Q 030220 128 AAAAIMEAMEA 138 (181)
Q Consensus 128 a~~~~~eaie~ 138 (181)
-.+.++.+++.
T Consensus 254 ~~~~ve~a~~~ 264 (414)
T COG0373 254 TREMVERALKI 264 (414)
T ss_pred CHHHHHHHHhc
Confidence 45666666554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.4 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|.+|+.+++.+.+.|.+++. ++..... . ....+++ ++...+ +..|...++...+.+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~-~~r~~~~--~-----~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAI-ADLNQDG--A-----NAVADEI-NKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE-EeCChHH--H-----HHHHHHH-HhcCceEEEEECCCCCHHHHHHHHHH
Confidence 357999999999999999999999999774 3433211 0 0011121 111222 34567778877777776
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|. ..|.
T Consensus 78 ~~~~~~~~d~vi~-~ag~ 94 (262)
T PRK13394 78 VAERFGSVDILVS-NAGI 94 (262)
T ss_pred HHHHcCCCCEEEE-CCcc
Confidence 6532 4777777 5554
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.42 Score=44.45 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcC-ccccc-cHHHHhhccCCcE-EEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLG-LPVFN-SVAEAKAETKANA-SVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~G-vPVy~-sl~e~~~~~~~DV-aIdfVPp~~a~~~~~e 134 (181)
+||.|+|. |-.|-...-.+.+.|-+++| .+|+++...-..| .|+|. -++++++++.-+- .--++..+.+.+.++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad- 78 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD- 78 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC-
Q ss_pred HHHcCCCEEEEeCCCCCHH-----HHHHHHHHhhhh
Q 030220 135 AMEAELDLVVCITEGIPQH-----DMVINFTRVNIL 165 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~e-----d~~~l~~~ak~i 165 (181)
|+.++.|-|.. |+..++.++++|
T Consensus 79 --------v~fIavgTP~~~dg~aDl~~V~ava~~i 106 (414)
T COG1004 79 --------VVFIAVGTPPDEDGSADLSYVEAVAKDI 106 (414)
T ss_pred --------EEEEEcCCCCCCCCCccHHHHHHHHHHH
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.6 Score=40.89 Aligned_cols=88 Identities=14% Similarity=-0.023 Sum_probs=54.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC-----eEeeecCCCCCCeE------------E----------------cCcc--cc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT-----KMVGGVTPKKGGTE------------H----------------LGLP--VF 104 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~-----~IVagVdP~~~G~e------------i----------------~GvP--Vy 104 (181)
||+|+|+ |-.|.++++.+...|+ .-+..+|+...... + .++. .|
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 6899999 9999999999988887 43435665544311 0 0111 11
Q ss_pred c-cH---------HHHhhccCCcEEEEee-ChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 105 N-SV---------AEAKAETKANASVIYV-PPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 105 ~-sl---------~e~~~~~~~DVaIdfV-Pp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
. .+ .++.+ ++|++|+++ +.++-+-+-+.|...+++.|-+-|.|+
T Consensus 80 ~~~v~~~~~~~~~~~f~~--~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~ 134 (435)
T cd01490 80 QNRVGPETEHIFNDEFWE--KLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT 134 (435)
T ss_pred ecccChhhhhhhhHHHhc--CCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 1 11 12223 578888886 444445566777788888887656554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.76 Score=41.32 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--Cc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--AN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~D-VaIdfVPp~~a~~~~~e 134 (181)
.| .+|.|+|...|+..++.+.+.|+++| .|.+.... +. -+ -+|+.++++ +. +++||+.++.+++.+++
T Consensus 50 ~W-AVVTGaTDGIGKayA~eLAkrG~nvv-LIsRt~~K--L~--~v---~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~ 120 (312)
T KOG1014|consen 50 SW-AVVTGATDGIGKAYARELAKRGFNVV-LISRTQEK--LE--AV---AKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE 120 (312)
T ss_pred CE-EEEECCCCcchHHHHHHHHHcCCEEE-EEeCCHHH--HH--HH---HHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence 35 67889999999999999999999966 77766522 21 12 244444444 33 68899999999999998
Q ss_pred HHHcC-CCEEEEeCCCCCH
Q 030220 135 AMEAE-LDLVVCITEGIPQ 152 (181)
Q Consensus 135 aie~G-Ik~IV~iTtG~~~ 152 (181)
-++.. |-..|+ --|...
T Consensus 121 ~l~~~~VgILVN-NvG~~~ 138 (312)
T KOG1014|consen 121 KLAGLDVGILVN-NVGMSY 138 (312)
T ss_pred HhcCCceEEEEe-cccccC
Confidence 88764 444444 555444
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.55 Score=35.52 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=49.0
Q ss_pred ceEEEEccCCCCcc--hhhHHHHHh-CC-eEeeecCCCCCCeEEc--Cccc--cc--cHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGT--FHTEQAIEY-GT-KMVGGVTPKKGGTEHL--GLPV--FN--SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~--~~~k~~~~~-g~-~IVagVdP~~~G~ei~--GvPV--y~--sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+||+|+|- | || +++..+.+. .. ++.+ .|+..|..-. .+++ -+ .+.++.+++++|.+|+---...+
T Consensus 1 MkVLviGs-G--gREHAia~~l~~s~~v~~v~~--aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~ 75 (100)
T PF02844_consen 1 MKVLVIGS-G--GREHAIAWKLSQSPSVEEVYV--APGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVVGPEAPLV 75 (100)
T ss_dssp EEEEEEES-S--HHHHHHHHHHTTCTTEEEEEE--EE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHHH
T ss_pred CEEEEECC-C--HHHHHHHHHHhcCCCCCEEEE--eCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChHHHH
Confidence 58999997 5 56 445555553 33 3442 2333231111 1222 11 45666667799999999999999
Q ss_pred HHHHHHHHHcCCCEE
Q 030220 129 AAAIMEAMEAELDLV 143 (181)
Q Consensus 129 ~~~~~eaie~GIk~I 143 (181)
..++|.+.+.||+.+
T Consensus 76 ~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 76 AGLADALRAAGIPVF 90 (100)
T ss_dssp TTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999998753
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=4.1 Score=32.71 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCC-cEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
..++|.|++|.+|+.+++.+.+.|.+++....+... +......++.+. .++ -+-.|...++.+.++++++.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH-------AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH-------HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 468999999999999999999999997654333221 111111222110 011 24567777888888888876
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (247)
T PRK09730 75 QHDEPLAALVN-NAGI 89 (247)
T ss_pred HhCCCCCEEEE-CCCC
Confidence 53 5777777 5665
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.1 Score=35.61 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=53.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cC-Cc-EEEEeeChHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TK-AN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~-~D-VaIdfVPp~~a~~~~~eai 136 (181)
+++|.|++|.+|+.+++.+.+.|.+++. ++.+... . -...+++... .+ .. ...|...++.+.+.++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFL-TDRDADG--L-----AQTVADARALGGTVPEHRALDISDYDAVAAFAADIH 73 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHH
Confidence 5899999999999999999999998664 3432211 0 0111222111 11 22 3578888888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|.
T Consensus 74 ~~~~~id~lv~-~ag~ 88 (272)
T PRK07832 74 AAHGSMDVVMN-IAGI 88 (272)
T ss_pred HhcCCCCEEEE-CCCC
Confidence 64 5787887 5554
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.6 Score=38.71 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=60.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC--eEEcC--cccccc--HHHHh----hccCCcEEEEe
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG--TEHLG--LPVFNS--VAEAK----AETKANASVIY 122 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G--~ei~G--vPVy~s--l~e~~----~~~~~DVaIdf 122 (181)
.+++..+|+|.|++|--|+..++..+..|..+++.+. +.+.. .+... +--|.+ +.+.+ ....+|+++|.
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 3556788999999999999999999998855554433 22211 01110 111432 33333 22369999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 123 VPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 123 VPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
+-.+...+.+..+...|.=..++.+.|
T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~g 245 (326)
T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALSG 245 (326)
T ss_pred CCHHHHHHHHHHhccCCEEEEEecCCC
Confidence 999999886666555554445554554
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.2 Score=38.74 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc---ccHHHHhhccCCcEEEEeeChHHHHHH---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF---NSVAEAKAETKANASVIYVPPPFAAAA--- 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy---~sl~e~~~~~~~DVaIdfVPp~~a~~~--- 131 (181)
.++|.++|+ |+.|+.+++.+..+|.+|..----.... +. -...| -++++... +.|++++..|-..--..
T Consensus 162 gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~~-~~-~~~~~~~~~d~~~~~~--~sD~ivv~~pLt~~T~~liN 236 (336)
T KOG0069|consen 162 GKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPP-EE-AYEYYAEFVDIEELLA--NSDVIVVNCPLTKETRHLIN 236 (336)
T ss_pred CCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCch-hh-HHHhcccccCHHHHHh--hCCEEEEecCCCHHHHHHhh
Confidence 467999999 9999999999999886666431111111 11 11233 38888887 89999999886544332
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
-+.+...+...++.-+.-=..=|.+.+.++.+.-.|+.
T Consensus 237 k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~ 274 (336)
T KOG0069|consen 237 KKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAG 274 (336)
T ss_pred HHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccc
Confidence 23333445555433354445566677777777766654
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.1 Score=35.52 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCe-Eeee-----cCCCCCCeEEcCccc-cccHHHHhhc-cCCcEEEEe-----
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTK-MVGG-----VTPKKGGTEHLGLPV-FNSVAEAKAE-TKANASVIY----- 122 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~-IVag-----VdP~~~G~ei~GvPV-y~sl~e~~~~-~~~DVaIdf----- 122 (181)
+++++.|.|+||--|+...+.+.+. -|. +++. +||.... .+.-..| |+.+++.... .++||+..+
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k-~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDK-VVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccc-eeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 4678999999999999999999985 455 4432 4554422 2221222 2346665433 378998765
Q ss_pred ----------eChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 ----------VPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 ----------VPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
|..+.+.+.++.|-+.|++.++-++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvS 130 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVS 130 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEe
Confidence 4678899999999999999977654
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.91 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=30.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
..+|+|+|+ |-+|..+++++.-.|..-+..+|+...
T Consensus 24 ~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v 59 (1008)
T TIGR01408 24 KSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKC 59 (1008)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCee
Confidence 378999999 889999999999999886667776653
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.7 Score=35.59 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=51.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.+... .. .+.+.+. .++. +..|...++.+.++++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~-~~r~~~~--~~------~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVI-ADIKPAR--AR------LAALEIG-PAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EcCCHHH--HH------HHHHHhC-CceEEEEccCCCHHHHHHHHHHHH
Confidence 356999999999999999999999999774 3433211 10 1111111 1222 3446677778888777776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. .+..+|. ..|.
T Consensus 76 ~~~~~id~li~-~ag~ 90 (257)
T PRK07067 76 ERFGGIDILFN-NAAL 90 (257)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 54 5777777 5443
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.86 Score=42.72 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-------cCCCCCCe-E-------------Ec-----Ccc---ccccHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGT-E-------------HL-----GLP---VFNSVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-------VdP~~~G~-e-------------i~-----GvP---Vy~sl~ 108 (181)
..+|+|+|+ |+.|+..++.+.+.|.+||+. .||+.... . +. ++| .. +-+
T Consensus 228 g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~ 305 (445)
T PRK14030 228 GKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK 305 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence 478999999 999999999999999999984 33331110 0 00 111 11 122
Q ss_pred HHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 109 EAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 109 e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++. ..+|||.+-+--. .--.++++...+.+.+.|+--+-|....+..++.
T Consensus 306 ~~~-~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL 356 (445)
T PRK14030 306 KPW-EQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF 356 (445)
T ss_pred cce-eccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 222 2467776644322 2234566677778999999866665555555554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.2 Score=38.90 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred eEEEEccCCCCcchhhHHHHHhCC--eEe-eecCCCCCCeEEc---------C--ccccc-cHHHHhhccCCcEEEEeeC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGT--KMV-GGVTPKKGGTEHL---------G--LPVFN-SVAEAKAETKANASVIYVP 124 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~--~IV-agVdP~~~G~ei~---------G--vPVy~-sl~e~~~~~~~DVaIdfVP 124 (181)
||.|+|+ |..|+.++..+...|. +|+ ..+++.+...... + ..++. +.++ .+ ++|++|+++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVIitag 77 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVVITAG 77 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEEEccC
Confidence 7999998 9999999988888774 444 2344443221111 1 12222 3333 34 7999999987
Q ss_pred hH----------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 PP----------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 p~----------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
.. ..++.++...+++-+.++++.+
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 62 2677777777888777665443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.6 Score=34.17 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh----ccCCcEEEEeeC-hHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA----ETKANASVIYVP-PPFAAAA 131 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~----~~~~DVaIdfVP-p~~a~~~ 131 (181)
.++.|+|.|+++-+|+.+.+.+.+.|.+++......... ....+.+..+ ..-.....|.+. ++.+...
T Consensus 4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~ 76 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE-------AAEALAAAIKEAGGGRAAAVAADVSDDEESVEAL 76 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh-------hHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHH
Confidence 346789999999999999999998899966443322210 1111111111 111223378886 8999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC-----CHHHHHHHHHHhhhhchhc
Q 030220 132 IMEAMEA--ELDLVVCITEGI-----PQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~-----~~ed~~~l~~~ak~ipv~~ 169 (181)
++.+.+. ++..+++ ..|. +.++... +++.+.+.+.+
T Consensus 77 ~~~~~~~~g~id~lvn-nAg~~~~~~~~~~~~~-~~~~~~~~~n~ 119 (251)
T COG1028 77 VAAAEEEFGRIDILVN-NAGIAGPDAPLEELTE-EDWDRVIDVNL 119 (251)
T ss_pred HHHHHHHcCCCCEEEE-CCCCCCCCCChhhCCH-HHHHHHHHHhH
Confidence 9888874 4886666 7775 3333322 44444444443
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=2.5 Score=34.93 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=53.2
Q ss_pred ceEEEEccC--CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGat--GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++ +.+|+.+++.+.+.|.+|+.. +.+... -..+++... .++ -+..|.+.++.+.++++++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~-~r~~~~--------~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYT-YQNDRM--------KKSLQKLVD-EEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe-cCchHH--------HHHHHhhcc-CceeEEeCCCCCHHHHHHHHHHH
Confidence 568889998 689999999999999997743 332110 011222211 112 2446778899999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. .+..+|+ ..|+
T Consensus 78 ~~~~g~iD~lv~-nAg~ 93 (252)
T PRK06079 78 KERVGKIDGIVH-AIAY 93 (252)
T ss_pred HHHhCCCCEEEE-cccc
Confidence 764 4777777 5554
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=89.52 E-value=1 Score=40.55 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=50.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-Ec-Cccc-c--cc---HHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HL-GLPV-F--NS---VAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-i~-GvPV-y--~s---l~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||+|+|. |..++.+++.+.+.++.+...++|...+.. .. ...+ . .+ +.++.+++++|.++....-.....
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~ 79 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFAKKKKIDLAVIGPEAPLVLG 79 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCCCccEEEEECCCHHHhhhcccccccCCCCCHHHHHHHHHHhCCCEEEECCchHHHHH
Confidence 47999999 888999999888866443323444433311 11 1111 1 23 555666678888875543334455
Q ss_pred HHHHHHHcCCCEE
Q 030220 131 AIMEAMEAELDLV 143 (181)
Q Consensus 131 ~~~eaie~GIk~I 143 (181)
+++.+-+.|++.+
T Consensus 80 ~~~~l~~~gi~~~ 92 (423)
T TIGR00877 80 LVDALEEAGIPVF 92 (423)
T ss_pred HHHHHHHCCCeEE
Confidence 6777777888644
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 181 | ||||
| 2nu9_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or | 1e-33 | ||
| 2nu7_A | 288 | C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-33 | ||
| 2nu6_A | 288 | C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-33 | ||
| 2nua_A | 288 | C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-33 | ||
| 2nu8_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-33 | ||
| 1jkj_A | 288 | E. Coli Scs Length = 288 | 1e-33 | ||
| 2scu_A | 288 | A Detailed Description Of The Structure Of Succinyl | 1e-33 | ||
| 1cqi_A | 286 | Crystal Structure Of The Complex Of Adp And Mg2+ Wi | 2e-33 | ||
| 1eud_A | 311 | Crystal Structure Of Phosphorylated Pig Heart, Gtp- | 5e-32 | ||
| 1euc_A | 311 | Crystal Structure Of Dephosphorylated Pig Heart, Gt | 5e-32 | ||
| 2fp4_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 5e-32 | ||
| 2fpg_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 6e-32 | ||
| 2yv1_A | 294 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 4e-26 | ||
| 2yv2_A | 297 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 2e-25 | ||
| 3ufx_A | 296 | Thermus Aquaticus Succinyl-coa Synthetase In Comple | 6e-24 | ||
| 1oi7_A | 288 | The Crystal Structure Of Succinyl-Coa Synthetase Al | 2e-23 |
| >pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 | Back alignment and structure |
|
| >pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 | Back alignment and structure |
|
| >pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 | Back alignment and structure |
|
| >pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 | Back alignment and structure |
|
| >pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305 | Back alignment and structure |
|
| >pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 | Back alignment and structure |
|
| >pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294 | Back alignment and structure |
|
| >pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 | Back alignment and structure |
|
| >pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 | Back alignment and structure |
|
| >pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 1e-76 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 8e-76 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 1e-75 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 4e-75 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 2e-74 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 5e-55 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 1e-49 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 5e-30 |
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-76
Identities = 81/112 (72%), Positives = 93/112 (83%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 1 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 60
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 61 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 112
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 8e-76
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA
Sbjct: 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
A T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 61 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 105
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 1e-75
Identities = 59/105 (56%), Positives = 80/105 (76%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF++V EA
Sbjct: 7 MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAV 66
Query: 112 AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
ET ANASVI+VP PFA A+ EA++A ++L+V ITE IP HD +
Sbjct: 67 KETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTM 111
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 4e-75
Identities = 58/104 (55%), Positives = 77/104 (74%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
+ +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-74
Identities = 60/106 (56%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Query: 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK 111
AV VD TRV+ QGITG+ G+FH + +EYGTK+V GVTP KGG+E G+PV++SV EA
Sbjct: 7 AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEAL 66
Query: 112 AE-TKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
AE + N S+++VP PFA A+ EA++A + LVV ITEGIP HD +
Sbjct: 67 AEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTM 112
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 5e-55
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 52 AVFVDKNTRVICQGITGK--NGTFHTEQAIEY-GTKMVGGVTPKKG--------GTEHLG 100
++T+ I G+ + G + + V P G G + +
Sbjct: 4 TTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 63
Query: 101 LPVFNSVAEA-KAETKANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMV 156
+PVF ++A+A + + + + + A + ME M A++ + I EGIP+
Sbjct: 64 IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTR 121
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 | Back alignment and structure |
|---|
Score = 170 bits (431), Expect = 1e-49
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 19/174 (10%)
Query: 2 ARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASH------PAVFV 55
L GS + PS +S S R A + S
Sbjct: 434 TANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLF 493
Query: 56 DKNTRVICQGITGKN--GTFHTEQAIEY-GTKMVGGVTPKKG--------GTEHLGLPVF 104
++T+ I G+ + G + + V P G G + + +PVF
Sbjct: 494 SRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVF 553
Query: 105 NSVAEA-KAETKANASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMV 156
++A+A + + + + + A + ME M A++ + I EGIP+
Sbjct: 554 KNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTR 607
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-30
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 77 QAIEYGTKMVGGVTPKKGGTEHL-GLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135
Q +E K + G ++ L + ++S + AN ++I V +AA +A
Sbjct: 2 QQLEEALK---QLAQGSGSSQALTQVRRWDSACQK--LPDANLALISVAGEYAAELANQA 56
Query: 136 MEAELDLVVCITEGIPQHDMV 156
++ L+ V+ ++ + D +
Sbjct: 57 LDRNLN-VMMFSDNVTLEDEI 76
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 99.92 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 99.91 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 99.91 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 99.91 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 99.9 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 99.84 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 99.78 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 99.76 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 99.76 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 99.72 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 99.69 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 99.69 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 99.67 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 99.66 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 99.66 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.66 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 99.6 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 99.57 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 99.55 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 99.31 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 99.3 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 99.18 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 99.14 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 99.1 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 99.07 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 99.07 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 99.06 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 99.06 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 99.05 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 99.05 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 99.03 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 99.03 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 99.03 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 99.02 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 99.02 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 99.02 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.01 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 99.01 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 99.0 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 99.0 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 99.0 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.99 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.98 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.97 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.97 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.96 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.96 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.96 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.96 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.94 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.94 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.94 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.94 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.92 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.92 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.92 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.89 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.89 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.88 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.88 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.87 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.86 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.83 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.82 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.82 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.8 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 98.78 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.76 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.75 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.73 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.7 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 98.69 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.68 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.67 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.61 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.55 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.48 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 98.43 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 98.43 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.42 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.39 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 98.35 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.32 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.3 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.22 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.2 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.2 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.19 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 98.18 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.17 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 98.15 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.14 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 98.12 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 98.1 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 98.09 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 98.09 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 98.07 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.07 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 98.05 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 98.04 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 98.04 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 98.02 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.02 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 98.01 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.01 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 98.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.97 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.96 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.94 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.94 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.94 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.93 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.92 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.91 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.87 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.86 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.86 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.85 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.83 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.81 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.8 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.8 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.79 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 97.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.74 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.74 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.74 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.74 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.73 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.71 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.71 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.7 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.7 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.69 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.66 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.66 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.65 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.65 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.64 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.63 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.63 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.61 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.59 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.58 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.57 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.57 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.57 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.56 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.56 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.53 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.51 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.5 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.48 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 97.48 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.47 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.47 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.46 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.46 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.45 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 96.57 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.44 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.42 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.42 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.41 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.41 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.4 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.4 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.4 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.39 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 97.39 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.38 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.38 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 97.38 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.38 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.37 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 97.36 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.35 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.34 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.32 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.29 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.27 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.27 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.26 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.25 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.24 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.23 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.22 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.21 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.2 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.19 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 97.19 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.19 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 97.18 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.18 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.18 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.18 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.15 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.15 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.14 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.13 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.13 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.12 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.1 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.08 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.08 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.08 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 97.02 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.02 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.01 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.01 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 97.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.97 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.97 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.97 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 96.96 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 96.96 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 96.95 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 96.95 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 96.95 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 96.94 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.93 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.92 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.92 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.92 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.91 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 96.9 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 96.88 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.88 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 96.87 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.86 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.86 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.85 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 96.85 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.84 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.83 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.82 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.81 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 96.81 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.78 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.77 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.77 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.77 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.76 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.75 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.75 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.75 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.73 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.72 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.72 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.7 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.7 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.7 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.69 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.66 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.65 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 96.65 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.63 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.62 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.62 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.62 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.61 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.61 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.6 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.59 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.59 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.59 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.58 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.58 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.57 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 96.57 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.56 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.56 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.55 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.51 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 96.5 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.48 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 96.47 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 96.44 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.42 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.37 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.36 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.36 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.34 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 96.33 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.32 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 96.31 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.3 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.29 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.29 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 96.24 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.24 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 96.24 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.24 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 96.23 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.23 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.2 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 96.19 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.19 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 96.17 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.17 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.16 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.14 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 96.11 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.1 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 96.1 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 96.09 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.08 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 96.07 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.06 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.04 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 96.04 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.04 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.03 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.03 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 96.02 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 96.02 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 96.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.95 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 95.94 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.91 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.83 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 95.83 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 95.75 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.71 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 95.69 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 95.63 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.62 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.61 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 95.61 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.6 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 95.6 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.59 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.58 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 95.56 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 95.52 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.49 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.49 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.45 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.4 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 95.39 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.39 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.37 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 95.37 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 95.32 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.3 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.27 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 95.22 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 95.21 | |
| 1gr0_A | 367 | Inositol-3-phosphate synthase; isomerase, oxidored | 95.21 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 95.15 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.06 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 94.98 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.91 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 94.86 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 94.84 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 94.8 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 94.76 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 94.75 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 94.73 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.72 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 94.7 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 94.69 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.68 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 94.62 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 94.59 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 94.57 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.56 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 94.55 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 94.51 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 94.47 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 94.47 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.47 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.45 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.44 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.43 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.42 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 94.41 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.41 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 94.41 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 94.4 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 94.38 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 94.32 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.26 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 94.24 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.21 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.17 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.16 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.16 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.16 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.14 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.13 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.12 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 94.1 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 94.09 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 94.05 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.01 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 94.01 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.01 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 94.01 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.97 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 93.95 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 93.92 | |
| 2g6t_A | 306 | Uncharacterized protein, homolog HI1244 from haemo | 93.9 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 93.89 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 93.89 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 93.86 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 93.85 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 93.82 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.81 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 93.79 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 93.78 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 93.78 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.71 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 93.7 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.69 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.65 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 93.61 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 93.61 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.6 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.57 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 93.56 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.55 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 93.54 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.53 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 93.51 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 93.51 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 93.51 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 93.51 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 93.47 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 93.38 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 93.38 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 93.37 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 93.35 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 93.33 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.33 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 93.32 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 93.32 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 93.32 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 93.32 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 93.3 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.28 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 93.28 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.27 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 93.23 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 93.22 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 93.22 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 93.21 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.21 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 93.16 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 93.15 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 93.13 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 93.1 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 93.08 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 93.06 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 93.06 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.05 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 93.04 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.03 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 92.99 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.97 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.96 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 92.94 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 92.92 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 92.9 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 92.89 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 92.87 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 92.86 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 92.83 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.82 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 92.81 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 92.8 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 92.74 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 92.7 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 92.68 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 92.66 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 92.65 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 92.65 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.63 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 92.61 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 92.61 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 92.61 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 92.58 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 92.56 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.5 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.5 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.47 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 92.47 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.46 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 92.46 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.45 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 92.44 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 92.43 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 92.42 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 92.42 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 92.38 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 92.34 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 92.33 |
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-25 Score=189.62 Aligned_cols=115 Identities=51% Similarity=0.837 Sum_probs=109.3
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++++++||+|+|++|+||+.+++.++++|++++++|||++.|+++.|+|||++++|+++++++|++|+|+||+.+.+++
T Consensus 2 ~~~~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~ 81 (288)
T 1oi7_A 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA 81 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence 68899999999999999999999999999999999999998767889999999999998877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|+++|++.+|++|+||+++|..+|.++|++.++
T Consensus 82 ~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi 116 (288)
T 1oi7_A 82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS 116 (288)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998876
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=187.49 Aligned_cols=117 Identities=51% Similarity=0.812 Sum_probs=107.9
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC-CcEEEEeeChHHHH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAA 129 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~-~DVaIdfVPp~~a~ 129 (181)
|..+++++++|+|+|++|+||+.+.+.+.++|+++|++|||++.|+++.|+|+|++++|++++++ +|++|||+||+.+.
T Consensus 6 ~~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~ 85 (297)
T 2yv2_A 6 MAVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAP 85 (297)
T ss_dssp ---CCSTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHH
T ss_pred hhHhhCCCCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHH
Confidence 66899999999999999999999999999999999999999987778899999999999987555 99999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+++++|+++|++.+|++|+||+++|..+|.++|++.++
T Consensus 86 ~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 123 (297)
T 2yv2_A 86 DAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA 123 (297)
T ss_dssp HHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999989999999999999999998876
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=185.20 Aligned_cols=116 Identities=52% Similarity=0.838 Sum_probs=109.3
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
..+++++++++|+|++|+||+.+.+.+.++|+++|++|||++.|+++.|+|+|++++|+++++++|++|+|+||+.+.++
T Consensus 7 ~~l~~~~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~ 86 (294)
T 2yv1_A 7 MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDA 86 (294)
T ss_dssp CCSSCTTCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHH
Confidence 35789999999999999999999999999999999999999877788999999999999887789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+++|+++|++.+|++|+||+++|..+|.++|++.++
T Consensus 87 v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 87 VFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999989999999999999999998776
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=186.07 Aligned_cols=120 Identities=68% Similarity=1.038 Sum_probs=112.5
Q ss_pred cCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 46 AAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 46 ~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
|++|.+..++++++.++|+|+||++|+.+++.++++|+++|++|||++.|+++.|+|||++++|+++++++|++++|+|+
T Consensus 2 ~~~~~~~~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~ 81 (305)
T 2fp4_A 2 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPP 81 (305)
T ss_dssp TGGGGGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH
T ss_pred chhhHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCH
Confidence 66999999999988777779999999999999999999999999999877789999999999999987789999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.+++++++|+++|++.+|+||+|++++|+.++.+.+++-
T Consensus 82 ~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 82 PFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999875
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-24 Score=181.89 Aligned_cols=115 Identities=62% Similarity=0.992 Sum_probs=108.2
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++++++||+|+|+||+||+.+++.+.++|+++|++|||++.|+++.|+|+|++++|+++++++|++++|+|++.+.+++
T Consensus 2 ~~~~~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~ 81 (288)
T 2nu8_A 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI 81 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred eecCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence 68899999999999999999999999999999999999987656789999999999998766899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|+++|++.+|++|+|++++|..+|.++|++.++
T Consensus 82 ~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv 116 (288)
T 2nu8_A 82 LEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGV 116 (288)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999988766
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-21 Score=170.03 Aligned_cols=110 Identities=19% Similarity=0.338 Sum_probs=96.3
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHh-------CCeEeeecCCCCCC--eEE------cCccccccHHHHhhcc-CC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEY-------GTKMVGGVTPKKGG--TEH------LGLPVFNSVAEAKAET-KA 116 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~-------g~~IVagVdP~~~G--~ei------~GvPVy~sl~e~~~~~-~~ 116 (181)
.++++++||+|+|++||+ ++.|+++ ++++|++|||++.| +++ .|+|||++++|+++++ ++
T Consensus 5 ~l~~~~tkviV~G~~Gk~----~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~ 80 (334)
T 3mwd_B 5 TLFSRHTKAIVWGMQTRA----VQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV 80 (334)
T ss_dssp CCCCTTCCEEEESCCHHH----HHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred cccCCCCeEEEECCchHH----HHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCC
Confidence 589999999999999884 4555555 59999999999975 555 3899999999998765 68
Q ss_pred cEEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 117 NASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 117 DVaIdfVPp~~a~~~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
|++|+|||+..+.+.+.++++ +|++.||+||+||+++|+.+|.++|++-.
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g 131 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKG 131 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999888888 99999999999999999999999997743
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=155.20 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=97.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCC---CCeE--------EcCccccccHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~---~G~e--------i~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
.+.||+|+|++|+||+.+++.+.+ .++++|+.+|+.. .|++ -.|+|+|++++++++ ++|++|||++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvIDFT~ 97 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDFSQ 97 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEECSC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEEcCC
Confidence 458999999999999999999887 5999999998643 2322 248999999999987 8999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
|+.+.++++.|+++|++.|++ |||+++++..+|+++|+++|+-
T Consensus 98 p~a~~~~~~~~l~~Gv~vViG-TTG~~~e~~~~L~~aa~~~~~~ 140 (288)
T 3ijp_A 98 PQASVLYANYAAQKSLIHIIG-TTGFSKTEEAQIADFAKYTTIV 140 (288)
T ss_dssp HHHHHHHHHHHHHHTCEEEEC-CCCCCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhCcCCEE
Confidence 999999999999999999999 9999999999999999999964
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-19 Score=169.49 Aligned_cols=110 Identities=19% Similarity=0.339 Sum_probs=99.1
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhC-------CeEeeecCCCCCC--eEE------cCccccccHHHHhhcc-CC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKGG--TEH------LGLPVFNSVAEAKAET-KA 116 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g-------~~IVagVdP~~~G--~ei------~GvPVy~sl~e~~~~~-~~ 116 (181)
.++++++||+|+|++|| +++.|++|| +++|++|+|++.| +++ .|+|||+|++|+++++ ++
T Consensus 491 ~l~~~~trviV~G~tg~----~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~~~~p~~ 566 (829)
T 3pff_A 491 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV 566 (829)
T ss_dssp CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred eeecCCCeEEEECCcHH----HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCCcCCcccCCcHHHHhhccCCC
Confidence 67999999999999877 788888876 8899999999985 333 4899999999998765 68
Q ss_pred cEEEEeeChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 117 NASVIYVPPPFAAAAIMEAME-AELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 117 DVaIdfVPp~~a~~~~~eaie-~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
|++|+|||+..+.+++++|++ +|++.+|+||+||+++|+.+|.++|++-.
T Consensus 567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g 617 (829)
T 3pff_A 567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKG 617 (829)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999 99999999999999999999999997643
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=148.78 Aligned_cols=109 Identities=16% Similarity=0.276 Sum_probs=96.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCC---CCeE---E----cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE---H----LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~---~G~e---i----~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
++||+|+|++|+||+.+++.+.+ .++++|+.+|+.. .|++ + .|+|+|++++++++ ++|++|||++|+
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~--~~DVVIDfT~p~ 84 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA--EADYLIDFTLPE 84 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH--HCSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhc--CCCEEEEcCCHH
Confidence 57999999999999999999887 5999999988652 2211 1 28999999999988 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.+.++++.|+++|++.|++ |||+++++..+|+++|+++|+-.
T Consensus 85 a~~~~~~~al~~G~~vVig-TTG~s~~~~~~L~~aa~~~~vv~ 126 (272)
T 4f3y_A 85 GTLVHLDAALRHDVKLVIG-TTGFSEPQKAQLRAAGEKIALVF 126 (272)
T ss_dssp HHHHHHHHHHHHTCEEEEC-CCCCCHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhccCCEEE
Confidence 9999999999999999998 99999999999999999999743
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-18 Score=131.49 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=88.2
Q ss_pred eccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+|+...+|+|+|++ |++|+.+.+++.++||+ |.+|||++.++++.|+|+|++++|+++ ++|++++++|++.+++
T Consensus 9 ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~-v~~vnp~~~~~~i~G~~~~~sl~el~~--~vDlavi~vp~~~~~~ 85 (140)
T 1iuk_A 9 YLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPSALMD 85 (140)
T ss_dssp HHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHHHHTT
T ss_pred HHcCCCEEEEECCCCCCCChHHHHHHHHHHCCCE-EEEeCCCcccCcCCCEEecCCHHHCCC--CCCEEEEEeCHHHHHH
Confidence 45444779999999 88899999999999998 669999975678999999999999987 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++++|++.|++.+|+ .+|+.++++.++.+
T Consensus 86 v~~~~~~~gi~~i~~-~~g~~~~~~~~~a~ 114 (140)
T 1iuk_A 86 HLPEVLALRPGLVWL-QSGIRHPEFEKALK 114 (140)
T ss_dssp THHHHHHHCCSCEEE-CTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE-cCCcCHHHHHHHHH
Confidence 999999999999987 67777554444433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=141.01 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=99.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCC---CeE--------EcCccccccHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG---GTE--------HLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~---G~e--------i~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
+++||+|+|++|+||+.+++.+.+ .|+++++.+|+... +.+ -.|++++++++++++ ++|++|||++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcCC
Confidence 457999999999999999998876 59999998875431 211 137889999998886 7999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-------hhhhhhhhc
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-------LNFIMKLTR 178 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-------~~~~~~~~~ 178 (181)
|+.+.++++.|+++|++.|++ |||++++|..+|.++++++|+-+ .|.+|+|.+
T Consensus 82 p~~~~~~~~~a~~~G~~vVig-TtG~~~e~~~~L~~~a~~~~vv~a~N~siGvn~~~~l~~ 141 (273)
T 1dih_A 82 PEGTLNHLAFCRQHGKGMVIG-TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLE 141 (273)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CCCCCHHHHHHHHHHTTTSCEEECSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEE-CCCCCHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHH
Confidence 999999999999999999888 99999999999999999999643 355666543
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=139.43 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=92.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
++||+|+|+ |+||+.+.+.+.+. + ++++.+|+.... -.|+|+|++++++. ++|++|||++|+.+.++++ +
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~--~~gv~v~~dl~~l~---~~DVvIDft~p~a~~~~~~--l 73 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKA--TTPYQQYQHIADVK---GADVAIDFSNPNLLFPLLD--E 73 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC----CCSCBCSCTTTCT---TCSEEEECSCHHHHHHHHT--S
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccc--cCCCceeCCHHHHh---CCCEEEEeCChHHHHHHHH--H
Confidence 579999999 99999999999886 6 999999977643 46899999999875 6999999999999999997 8
Q ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhch-hh
Q 030220 137 EAELDLVVCITEGIPQHDMVINFTRVNILLVAFL-NF 172 (181)
Q Consensus 137 e~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~-~~ 172 (181)
++|++.|++ |||+++++..+|+++|+++||-.. ||
T Consensus 74 ~~g~~vVig-TTG~s~e~~~~l~~aa~~~~v~~a~N~ 109 (243)
T 3qy9_A 74 DFHLPLVVA-TTGEKEKLLNKLDELSQNMPVFFSANM 109 (243)
T ss_dssp CCCCCEEEC-CCSSHHHHHHHHHHHTTTSEEEECSSC
T ss_pred hcCCceEeC-CCCCCHHHHHHHHHHHhcCCEEEECCc
Confidence 999999998 999999999999999999997543 54
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=123.31 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=87.2
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
.+++...+|+|+|++ |++|+.+.+.+.+.|++ |.+|||+. +++.|+|+|++++|+++ .+|++++++|++.++
T Consensus 17 ~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~-v~~Vnp~~--~~i~G~~~y~sl~~l~~--~vDlvvi~vp~~~~~ 91 (144)
T 2d59_A 17 EILTRYKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKPKLTM 91 (144)
T ss_dssp HHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCHHHHH
T ss_pred HHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCE-EEEECCCC--CeECCeeccCCHHHcCC--CCCEEEEEeCHHHHH
Confidence 356545789999998 78899999999999998 66999986 57899999999999987 799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++++|+++|++.+|+ ..|+.++++.++.+
T Consensus 92 ~vv~~~~~~gi~~i~~-~~g~~~~~l~~~a~ 121 (144)
T 2d59_A 92 EYVEQAIKKGAKVVWF-QYNTYNREASKKAD 121 (144)
T ss_dssp HHHHHHHHHTCSEEEE-CTTCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEE-CCCchHHHHHHHHH
Confidence 9999999999999986 77877554444433
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-17 Score=126.16 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=90.9
Q ss_pred eccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 54 FVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+|+...+|+|+|++ |+||+.+.+.+.+.|++ |.++||++.|+++.|+|+|+|++|+++ ++|++++++|++.+++
T Consensus 9 ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~~g~~i~G~~~~~sl~el~~--~~Dlvii~vp~~~v~~ 85 (145)
T 2duw_A 9 ILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKVAGKTLLGQQGYATLADVPE--KVDMVDVFRNSEAAWG 85 (145)
T ss_dssp HHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSSTTSEETTEECCSSTTTCSS--CCSEEECCSCSTHHHH
T ss_pred HHhCCCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcccccccCCeeccCCHHHcCC--CCCEEEEEeCHHHHHH
Confidence 45534679999998 88999999999999998 669999987678999999999999987 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
++++|++.|++.||+++..+ ..++.+++++-.+.
T Consensus 86 v~~~~~~~g~~~i~i~~~~~----~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 86 VAQEAIAIGAKTLWLQLGVI----NEQAAVLAREAGLS 119 (145)
T ss_dssp HHHHHHHHTCCEEECCTTCC----CHHHHHHHHTTTCE
T ss_pred HHHHHHHcCCCEEEEcCChH----HHHHHHHHHHcCCE
Confidence 99999999999999976555 34555556554433
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=144.58 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=92.7
Q ss_pred eccCCceEEEEccCC---CCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 54 FVDKNTRVICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGatG---kmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
++++ .+|+|+|+++ ++|+.+.++++++|...|.+|||+. +++.|+|+|++++|+++ .+|++++|+|++.+.+
T Consensus 5 l~~p-~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~--~~i~G~~~y~sl~~lp~--~~Dlavi~vp~~~~~~ 79 (457)
T 2csu_A 5 FFNP-KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPKRFVKD 79 (457)
T ss_dssp TTSC-SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCHHHHHH
T ss_pred hcCC-CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCC--CeECCEeccCCHHHcCC--CCCEEEEecCHHHHHH
Confidence 5665 6699999995 5577999999998755778999994 57999999999999987 8999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHH-H-----HHHHHHHhhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQH-D-----MVINFTRVNIL 165 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~e-d-----~~~l~~~ak~i 165 (181)
++++|+++|+|.+|++|+||++. + ..++.+++++-
T Consensus 80 ~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~ 120 (457)
T 2csu_A 80 TLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKY 120 (457)
T ss_dssp HHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHc
Confidence 99999999999999999999862 2 67788888653
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=119.42 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=86.0
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
.++++ ++|+|+|+| |+||+.+.+.+.+.|++ |.++||+. +++.|+|+|+|++|+++ ++|++++++|++.++
T Consensus 10 ~l~~p-~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~~--~~i~G~~~~~s~~el~~--~vDlvii~vp~~~v~ 83 (138)
T 1y81_A 10 NSKEF-RKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVGL 83 (138)
T ss_dssp ----C-CEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHHH
T ss_pred cccCC-CeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCCC--CeECCeeecCCHHHhCC--CCCEEEEEeCHHHHH
Confidence 45555 679999998 88999999999999998 66899986 57899999999999987 799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+++++|+++|++.+|+++.++. .++.+++++
T Consensus 84 ~v~~~~~~~g~~~i~~~~~~~~----~~l~~~a~~ 114 (138)
T 1y81_A 84 QVAKEAVEAGFKKLWFQPGAES----EEIRRFLEK 114 (138)
T ss_dssp HHHHHHHHTTCCEEEECTTSCC----HHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccHH----HHHHHHHHH
Confidence 9999999999999999887763 444555544
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=118.48 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=86.2
Q ss_pred CceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..+|+|+|+| ++.|..+.+++++.||+|+ +|||+. +++.|+|+|++++|+++ +|++++|+|++.+.+++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~-pVnP~~--~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~v~e 77 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFI-PVGRKK--GEVLGKTIINERPVIEG---VDTVTLYINPQNQLSEYNY 77 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEE-EESSSC--SEETTEECBCSCCCCTT---CCEEEECSCHHHHGGGHHH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEE-EECCCC--CcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHHHHH
Confidence 3569999999 6677789999999999766 899986 57999999999999874 9999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 135 AMEAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
|.+.|++.|| ++.|+.++++.++.+.+.
T Consensus 78 ~~~~g~k~v~-~~~G~~~~e~~~~a~~~G 105 (122)
T 3ff4_A 78 ILSLKPKRVI-FNPGTENEELEEILSENG 105 (122)
T ss_dssp HHHHCCSEEE-ECTTCCCHHHHHHHHHTT
T ss_pred HHhcCCCEEE-ECCCCChHHHHHHHHHcC
Confidence 9999999876 599998877666666554
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=127.53 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=86.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
+||+|+|++|+||+.+.+.+.+. |+++++.+|+. ++++++.. .++|++|||++|+.+.++++.|++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------------~dl~~~~~-~~~DvvIDfT~p~a~~~~~~~a~~ 67 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------------DPLSLLTD-GNTEVVIDFTHPDVVMGNLEFLID 67 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------------CCTHHHHH-TTCCEEEECSCTTTHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------------CCHHHHhc-cCCcEEEEccChHHHHHHHHHHHH
Confidence 47999999999999999998875 99999999874 34666654 379999999999999999999999
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHHhh---hhch-hchhh
Q 030220 138 AELDLVVCITEGIPQHDMVINFTRVN---ILLV-AFLNF 172 (181)
Q Consensus 138 ~GIk~IV~iTtG~~~ed~~~l~~~ak---~ipv-~~~~~ 172 (181)
+|++.|++ |||+++++..+|+++|+ .+|+ -..||
T Consensus 68 ~g~~~Vig-TTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 68 NGIHAVVG-TTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp TTCEEEEC-CCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred cCCCEEEc-CCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 99999999 99999999999999987 6774 44453
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=127.31 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=83.3
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
-...+|-.|.|++||||+.+.+...+.|+++|+.+|+.. . +++ + ++||+|||+.|+.+.++++.
T Consensus 9 ~~~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~--~--------~~l----~--~~DVvIDFT~P~a~~~~~~~ 72 (228)
T 1vm6_A 9 HHHHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--V--------EEL----D--SPDVVIDFSSPEALPKTVDL 72 (228)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--E--------EEC----S--CCSEEEECSCGGGHHHHHHH
T ss_pred hhccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCC--c--------ccc----c--CCCEEEECCCHHHHHHHHHH
Confidence 345678999999999999998876557999999998643 1 122 2 68999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 135 AMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
|+++|++.|++ ||||+++|..+|+++++++||-.
T Consensus 73 ~~~~g~~~ViG-TTG~~~~~~~~l~~~a~~~~vv~ 106 (228)
T 1vm6_A 73 CKKYRAGLVLG-TTALKEEHLQMLRELSKEVPVVQ 106 (228)
T ss_dssp HHHHTCEEEEC-CCSCCHHHHHHHHHHTTTSEEEE
T ss_pred HHHcCCCEEEe-CCCCCHHHHHHHHHHHhhCCEEE
Confidence 99999999999 99999999999999999988743
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-15 Score=125.90 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=83.6
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHH--HHHhCCeEeeec--CCC-CCCe-EEcCccccc--cHHHHhhccCCcEEEEe
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGGV--TPK-KGGT-EHLGLPVFN--SVAEAKAETKANASVIY 122 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~--~~~~g~~IVagV--dP~-~~G~-ei~GvPVy~--sl~e~~~~~~~DVaIdf 122 (181)
.++.+++.++|+|+|+ |++|+.+.+. ..+.|+++||.+ ||. +.|+ .+.|+|||+ +++++++++++|+++++
T Consensus 77 ~~Lg~~~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIA 155 (212)
T 3keo_A 77 EILNDHSTTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILT 155 (212)
T ss_dssp HHTTTTSCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEEC
T ss_pred HHhCCCCCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEe
Confidence 3456788899999999 9999988886 334699999975 477 8887 789999997 68888888899999999
Q ss_pred eChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 VPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 VPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+|...++++++.|+++||++||+||
T Consensus 156 vPs~~aq~v~d~lv~~GIk~I~nFa 180 (212)
T 3keo_A 156 VPSTEAQEVADILVKAGIKGILSFS 180 (212)
T ss_dssp SCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred cCchhHHHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999999999999
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=107.74 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=80.0
Q ss_pred eeccCCceEEEEccCCCCcchhhHH--HHHhCCeEeeec--CCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGGV--TPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~--~~~~g~~IVagV--dP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..++.+||+|+|+ |++|+.+++. ... |+++||.+ ||.+.|..+.|+||+. ++++++++ ++|++++++|..
T Consensus 75 lg~~~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~-~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 75 LGLNRKWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPG-RIEIALLTVPRE 151 (211)
T ss_dssp HTTTSCEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTT-TCCEEEECSCHH
T ss_pred hCcCCCCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHc-CCCEEEEeCCch
Confidence 45677789999999 9999988884 333 89999965 5888887889999865 78888887 899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iT 147 (181)
..+++++.|+++|++.|++|+
T Consensus 152 ~~~ei~~~l~~aGi~~Ilnf~ 172 (211)
T 2dt5_A 152 AAQKAADLLVAAGIKGILNFA 172 (211)
T ss_dssp HHHHHHHHHHHHTCCEEEECS
T ss_pred hHHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999977
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=106.30 Aligned_cols=92 Identities=24% Similarity=0.292 Sum_probs=74.1
Q ss_pred eeccCCceEEEEccCCCCcchhhHH--HHHhCCeEeeec--CCCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGGV--TPKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~--~~~~g~~IVagV--dP~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+..++.+||+|+|+ |++|+.+++. ..+.|+++||.+ ||.+.|..+.|+||+. ++++++++. |++++++|..
T Consensus 80 lg~~~~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~--D~ViIAvPs~ 156 (215)
T 2vt3_A 80 LDQDEMTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPAV 156 (215)
T ss_dssp HHHC---CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSC--CEEEECSCHH
T ss_pred hCcCCCCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhC--CEEEEecCch
Confidence 45677789999999 9999998884 334699999865 5888888889999876 688887653 9999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iT 147 (181)
.++++++.|+++|++.||+|+
T Consensus 157 ~~~ei~~~l~~aGi~~Ilnf~ 177 (215)
T 2vt3_A 157 AAQSITDRLVALGIKGILNFT 177 (215)
T ss_dssp HHHHHHHHHHHTTCCEEEECS
T ss_pred hHHHHHHHHHHcCCCEEEEcC
Confidence 999999999999999999988
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=106.47 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=91.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+.||+|+|+ |+||+.+.+.+.+. ++++++.+|+.... .+ .|+++|+++++++. ++|++++++|+....+.+..+
T Consensus 3 ~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~~gv~~~~d~~~ll~--~~DvViiatp~~~h~~~~~~a 78 (320)
T 1f06_A 3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPK 78 (320)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHH
T ss_pred CCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhcCCCceeCCHHHHhc--CCCEEEEcCCcHHHHHHHHHH
Confidence 478999998 99999999988885 89999887765322 12 37888999998874 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHH-HHHHHHhhh---hchhchhhh
Q 030220 136 MEAELDLVVCITEGIPQHDM-VINFTRVNI---LLVAFLNFI 173 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~-~~l~~~ak~---ipv~~~~~~ 173 (181)
+++|++.++..+.+++.++. .+|.+++++ +.+.+.||.
T Consensus 79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~ 120 (320)
T 1f06_A 79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 120 (320)
T ss_dssp HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBT
T ss_pred HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCCh
Confidence 99999888875568888998 999999986 555555553
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=98.89 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCeeeccCC--ceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCcEEEEeeC
Q 030220 50 HPAVFVDKN--TRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANASVIYVP 124 (181)
Q Consensus 50 ~~~~~~~~~--~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~DVaIdfVP 124 (181)
.+++.++++ .||.|+|+ |++|+ .+.+.+.+. ++++++..|+... ..|+|+|++++++++. .++|++++++|
T Consensus 15 ~~~~~~~~M~~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~~---~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 15 TENLYFQSMSPINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHGT---VEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp ----CCCCCCCEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSCC---CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred chhhccccCCCceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCChh---hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 344445443 68999999 99999 899988884 8999998887752 3689999999999986 68999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+....+.+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 91 ~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~ 133 (330)
T 4ew6_A 91 PQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGA 133 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999995554321136899999999999977544
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-10 Score=95.69 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=90.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe----EEcCccccccHHHHh--------hccCCcEEEEeeC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNSVAEAK--------AETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~----ei~GvPVy~sl~e~~--------~~~~~DVaIdfVP 124 (181)
++.||.|+|+.|.+|+.+.+.+.+.+.++++.+|+..... ...+.++|.++++++ +..++|++++++|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 5689999999889999999999888899999888665321 234789999999988 4568999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+....+.+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 82 ~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 124 (312)
T 3o9z_A 82 NHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGR 124 (312)
T ss_dssp GGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCC
T ss_pred chhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999996644321125899999999999987654
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-10 Score=93.94 Aligned_cols=110 Identities=10% Similarity=-0.002 Sum_probs=88.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCcc-ccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
++.||.|+|+ |++|+.+++.+.+. ++++++..|+.... + +-.|+| +|.+++++++..++|++++++|+....+
T Consensus 4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (329)
T 3evn_A 4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329)
T ss_dssp -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3578999999 99999999988775 78888877754322 1 224776 8999999998678999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 83 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 119 (329)
T 3evn_A 83 VAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNL 119 (329)
T ss_dssp HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCC
Confidence 9999999997766542236899999999999977544
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=98.45 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=91.2
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+++.||.|+|+ |+||+.+++.+.+. ++++++..|+.... + +-.|+++|.+++|+++..++|++++++|+....
T Consensus 11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 89 (354)
T 3q2i_A 11 DRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHP 89 (354)
T ss_dssp SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHH
T ss_pred CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 45689999999 99999999988875 89999888876422 1 124789999999998767899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.+..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 90 ~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~ 127 (354)
T 3q2i_A 90 TQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKK 127 (354)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence 99999999996555432236899999999999987554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=99.76 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=87.9
Q ss_pred cccCCCCCeeeccCCceEEEEccCCCCcchh-hHHHHH-hCCeEeeecCCCCCC-eE---EcCcc-ccccHHHHhhccCC
Q 030220 44 SSAAASHPAVFVDKNTRVICQGITGKNGTFH-TEQAIE-YGTKMVGGVTPKKGG-TE---HLGLP-VFNSVAEAKAETKA 116 (181)
Q Consensus 44 ~~~~~~~~~~~~~~~~rViVvGatGkmG~~~-~k~~~~-~g~~IVagVdP~~~G-~e---i~GvP-Vy~sl~e~~~~~~~ 116 (181)
|.-+-...++.++++.||.|+|+ |++|+.+ .+.+.+ .+++|+|..|+...- ++ -.|+| +|+|++|+++..++
T Consensus 9 ~~~~~~~~n~~~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~i 87 (350)
T 4had_A 9 SGVDLGTENLYFQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVI 87 (350)
T ss_dssp -------------CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSC
T ss_pred cccccCCccccccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCC
Confidence 33344556677888999999999 9999865 566766 489999988876421 11 24775 89999999987789
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 117 DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
|++++++|+..-.+.+..|+++|++..+==-=..+.+|..+|.++|++-.+
T Consensus 88 DaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~ 138 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKV 138 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTC
T ss_pred CEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCC
Confidence 999999999999999999999997644311125788999999999976543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-10 Score=97.15 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=91.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++.||.|+|+ |+||+.+++.+.+. ++++++..|+.... + +..|.++|++++++++..++|++++++|+....+.
T Consensus 3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 81 (344)
T 3euw_A 3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDL 81 (344)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHH
T ss_pred CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHH
Confidence 3578999999 99999999998885 89999887765422 1 12478999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=.-.++.++..+|.+++++-.+
T Consensus 82 ~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 117 (344)
T 3euw_A 82 ITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGAS 117 (344)
T ss_dssp HHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 999999998765542337899999999999987665
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=99.31 Aligned_cols=110 Identities=12% Similarity=-0.021 Sum_probs=90.3
Q ss_pred CCceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
++.||.|+|+ |+||+ .+.+.+.+. ++++++..|+.... + +-.|+|.|.+++|+++..++|++++++|+....+
T Consensus 26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 104 (350)
T 3rc1_A 26 NPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE 104 (350)
T ss_dssp CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred CceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3579999999 99999 788888885 89999887765321 1 1248999999999998668999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++.++==.-..+.+|..+|.+++++-.+
T Consensus 105 ~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~ 141 (350)
T 3rc1_A 105 WIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGL 141 (350)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999998755432337899999999999977544
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=95.42 Aligned_cols=110 Identities=10% Similarity=-0.046 Sum_probs=91.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC-eE---EcCc-cccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE---HLGL-PVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G-~e---i~Gv-PVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
++.||.|+|+ |+||+.+++.+.+ .++++++..|+.... ++ -.|+ .+|.+++++++..++|++++++|+....+
T Consensus 4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (330)
T 3e9m_A 4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS 82 (330)
T ss_dssp CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence 3579999999 9999999999888 489999888876422 11 2477 48999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 83 ~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~ 119 (330)
T 3e9m_A 83 AAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV 119 (330)
T ss_dssp HHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998766543347899999999999987654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=92.97 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=90.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe----EEcCccccccHHHHhh---------ccCCcEEEEee
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNSVAEAKA---------ETKANASVIYV 123 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~----ei~GvPVy~sl~e~~~---------~~~~DVaIdfV 123 (181)
++.||.|+|+.|.+|+.+.+.+.+.+.++++..|+..... ...+.++|.+++++++ ..++|++++++
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t 81 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS 81 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence 5789999999889999999999888899999888665321 1247899999999873 45899999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 124 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
|+....+.+..|+++|++.++==-=..+.+|..+|.+++++-.+
T Consensus 82 P~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 125 (318)
T 3oa2_A 82 PNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDK 125 (318)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999997644321126899999999999987544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=98.27 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=91.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+..||.|+|+ |+||+.+++.+.+. ++++++..|+.... + +..|++.|++++++++..++|++++++|+....+.
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 82 (354)
T 3db2_A 4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV 82 (354)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 4579999999 99999999998885 89999888876421 1 12489999999999976689999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 83 ~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~ 118 (354)
T 3db2_A 83 IEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGV 118 (354)
T ss_dssp HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence 999999997765543347899999999999987654
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-10 Score=96.34 Aligned_cols=110 Identities=13% Similarity=-0.002 Sum_probs=90.4
Q ss_pred CCceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCC--CeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~--G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++.||.|+|+ |++|+. +.+.+.+. ++++++..|+... ..+..+.++|++++|+++..++|++++++|+....+.+
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (362)
T 3fhl_A 4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA 82 (362)
T ss_dssp CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4579999999 999995 88888775 8999988776542 22344889999999999866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 83 ~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~ 117 (362)
T 3fhl_A 83 GMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGL 117 (362)
T ss_dssp HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 99999997665532236899999999999987554
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=96.96 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=89.3
Q ss_pred CceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCCeEE------cCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEH------LGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G~ei------~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+.||.|+|+ |.+|+ .+.+.+.+. ++++++..|+.. .+++ .|+++|++++++++..++|++++++|+....
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~-~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 79 (349)
T 3i23_A 2 TVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLHV-NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY 79 (349)
T ss_dssp CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTTC-CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred eeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCCH-HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence 368999999 99998 788877774 899999999873 3333 5789999999999866799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.+..|+++|++.++-=--..+.+|..+|.++|++-.+
T Consensus 80 ~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~ 117 (349)
T 3i23_A 80 DLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGV 117 (349)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence 99999999996554421126789999999999987443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=97.73 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=90.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+.||.|+|+ |.||+.+++.+.+. ++++++..|+.....+ -.|+++|++++++++..++|++++++|+....+.+.
T Consensus 5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 83 (359)
T 3e18_A 5 KYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI 83 (359)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred cCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 478999999 99999999988875 8999988776542111 258899999999998778999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 84 ~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~ 117 (359)
T 3e18_A 84 SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNK 117 (359)
T ss_dssp HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999997655432236899999999999987544
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-10 Score=93.18 Aligned_cols=107 Identities=10% Similarity=0.057 Sum_probs=86.9
Q ss_pred CceEEEEccCCCCcch-hhHHHHH-hCCeEeeecCCCCCCe-E---EcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTF-HTEQAIE-YGTKMVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~-~~k~~~~-~g~~IVagVdP~~~G~-e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+.||.|+|+ |+||+. +.+.+.+ .++++++..|+..... + ..|+++|++.+++. .++|++++++|+....+.
T Consensus 5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~--~~~D~V~i~tp~~~h~~~ 81 (319)
T 1tlt_A 5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA--ASCDAVFVHSSTASHFDV 81 (319)
T ss_dssp CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH--TTCSEEEECSCTTHHHHH
T ss_pred cceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhh--cCCCEEEEeCCchhHHHH
Confidence 478999999 999995 8887776 4889988877655321 1 24788999998873 389999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=...++.+|..+|.++|++-.+
T Consensus 82 ~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~ 117 (319)
T 1tlt_A 82 VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL 117 (319)
T ss_dssp HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999998766543467899999999999987654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-10 Score=91.31 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=80.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
+||.|+|+ |+||+.+.+.+.+.|+++++..|+.... .. +|++++++.+ .++|++++++|++...+.+..++++
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~---~~--~~~~~~~l~~-~~~DvVv~~~~~~~~~~~~~~~l~~ 73 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEH---EK--MVRGIDEFLQ-REMDVAVEAASQQAVKDYAEKILKA 73 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCC---TT--EESSHHHHTT-SCCSEEEECSCHHHHHHHHHHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcch---hh--hcCCHHHHhc-CCCCEEEECCCHHHHHHHHHHHHHC
Confidence 47999999 9999999998887799998887765421 11 8999999884 3899999999999999999999999
Q ss_pred CCCEEEEeCCCCCH-HHH-HHHHHHhhhh
Q 030220 139 ELDLVVCITEGIPQ-HDM-VINFTRVNIL 165 (181)
Q Consensus 139 GIk~IV~iTtG~~~-ed~-~~l~~~ak~i 165 (181)
|.+.|+. +++... ++. .+|.+++++-
T Consensus 74 G~~vv~~-~~~~~~~~~~~~~l~~~a~~~ 101 (236)
T 2dc1_A 74 GIDLIVL-STGAFADRDFLSRVREVCRKT 101 (236)
T ss_dssp TCEEEES-CGGGGGSHHHHHHHHHHHHHH
T ss_pred CCcEEEE-CcccCChHHHHHHHHHHHHhc
Confidence 9876665 776643 455 7888888763
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-10 Score=94.43 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=85.9
Q ss_pred CceEEEEccCCCCcchhhHHHHH--------hCCeEeeecCCCCCCe-E---EcCcc-ccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKKGGT-E---HLGLP-VFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--------~g~~IVagVdP~~~G~-e---i~GvP-Vy~sl~e~~~~~~~DVaIdfVP 124 (181)
..||.|+|+ |.+|+.+.+.+.. .+++|||..|+...-. + -.|+| +|+|.+|+++..++|++++++|
T Consensus 25 kirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 25 PLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred CccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence 368999999 9999988775443 2678999888765331 1 24665 9999999998778999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..-.+.+..|+++|++..+==-=..+.+|..+|.++|++-.+
T Consensus 104 ~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 146 (393)
T 4fb5_A 104 NQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGK 146 (393)
T ss_dssp GGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCC
Confidence 9999999999999998765422235899999999999977554
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.1e-10 Score=93.26 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=88.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE-cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH-LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
++.||.|+|+ |+||+.+.+.+.+. ++++++..|+.... ++. ..+++|++++++++..++|++++++|+....+.+.
T Consensus 9 ~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 87 (315)
T 3c1a_A 9 SPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEITL 87 (315)
T ss_dssp CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH
T ss_pred CcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH
Confidence 4578999999 99999999998884 88888877654311 011 11688999999986557999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+|+++|++.++-=.-.++.++..+|.+++++-.+
T Consensus 88 ~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~ 121 (315)
T 3c1a_A 88 AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV 121 (315)
T ss_dssp HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence 9999997655432457899999999999987654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.8e-10 Score=95.40 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=89.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+.||.|+|+ |+||+.+.+.+.+. ++++++..|+.... + +..|++ |.+++++++..++|++++++|+....+.+
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 80 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI 80 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred ceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence 468999999 99999999998884 89999887765421 1 125888 99999999876899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 81 ~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~ 115 (331)
T 4hkt_A 81 ERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKA 115 (331)
T ss_dssp HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 99999996654432347899999999999987654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-10 Score=98.12 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=89.9
Q ss_pred CceEEEEccCC-CCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITG-KNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatG-kmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+.||.|+|+ | .+|+.+++.+.+. ++++++.+|+.... + +-.|+|+|.+++|+++..++|++++++|+....+.
T Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~ 80 (387)
T 3moi_A 2 KIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEH 80 (387)
T ss_dssp CEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHH
T ss_pred ceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHH
Confidence 478999999 8 9999999988884 89999988876421 1 12489999999999987789999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 81 ~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~ 116 (387)
T 3moi_A 81 VVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGV 116 (387)
T ss_dssp HHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCC
Confidence 999999996655431236789999999999987554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=94.08 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCceEEEEccCCCCcchhhHHHH-H-hCCeEeeecCCCCCCe-E---EcCc-cccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGGT-E---HLGL-PVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~-~-~g~~IVagVdP~~~G~-e---i~Gv-PVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
++.||.|+|+ |+||+.+++.+. + .++++++..|+..... + ..|+ ++|++++++++..++|++++++|+....
T Consensus 7 ~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 85 (346)
T 3cea_A 7 KPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP 85 (346)
T ss_dssp CCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH
T ss_pred CcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH
Confidence 4579999999 999999999888 5 4889988777654211 1 1366 6899999998755799999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+.+..|+++|.+.++-=...++.++..+|.+++++-
T Consensus 86 ~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346)
T 3cea_A 86 EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346)
T ss_dssp HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence 999999999965544323567899999999999766
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-10 Score=95.96 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=89.9
Q ss_pred CCceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCCC--eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~G--~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++.||.|+|+ |++|+. +.+.+.+. ++++++..|+.... ....+.++|++++++++..++|++++++|+....+.+
T Consensus 6 ~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 84 (352)
T 3kux_A 6 DKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA 84 (352)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred CCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4589999999 999995 88888774 89999887765321 2345789999999999866799999999999999999
Q ss_pred HHHHHcCCCEEEEeCC-CCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITE-GIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTt-G~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++= -. ..+.+|..+|.++|++-.+
T Consensus 85 ~~al~aGkhV~~E-KPla~~~~e~~~l~~~a~~~g~ 119 (352)
T 3kux_A 85 QSALAAGKHVVVD-KPFTVTLSQANALKEHADDAGL 119 (352)
T ss_dssp HHHHHTTCEEEEC-SSCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCcEEEE-CCCcCCHHHHHHHHHHHHHcCC
Confidence 9999999655443 44 7899999999999987544
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-10 Score=94.98 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=89.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eE---EcC----ccccccHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE---HLG----LPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~e---i~G----vPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++.||.|+|+ |+||+.+++.+.+. ++++++..|+.... ++ -.| .++|++++++++..++|++++++|+..
T Consensus 5 ~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 83 (362)
T 1ydw_A 5 TQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL 83 (362)
T ss_dssp -CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred CceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence 3578999999 99999999988874 88999887765421 11 124 578999999987667999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
..+.+..|+++|++.++-=.-.++.+|..+|.++|++-.+-
T Consensus 84 h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~ 124 (362)
T 1ydw_A 84 HVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 124 (362)
T ss_dssp HHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence 99999999999976554322578999999999999876543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-10 Score=95.91 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=93.0
Q ss_pred CceEEEEccCCCCcchhhHHHH-H-hCCeEeeecCCCCCC-eE---EcC--ccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGG-TE---HLG--LPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~-~-~g~~IVagVdP~~~G-~e---i~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+.||.|+|+ |+||+.+++.+. + .++++++..|+.... ++ -.| .++|.+++++++..++|++++++|+....
T Consensus 23 ~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 23 TLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred eeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 478999999 999999999888 4 489999887766532 11 135 78999999999866899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc--hhhhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF--LNFIMK 175 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~--~~~~~~ 175 (181)
+.+..|+++|++.++==--..+.+|..+|.+++++-.+-+ .+|.++
T Consensus 102 ~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R 149 (357)
T 3ec7_A 102 DVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRR 149 (357)
T ss_dssp HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGG
T ss_pred HHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 9999999999665543223789999999999998776533 455443
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.6e-10 Score=96.12 Aligned_cols=109 Identities=15% Similarity=0.052 Sum_probs=89.1
Q ss_pred CCceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCC--CeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~--G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++.||.|+|+ |++|+. +.+.+.+. ++++++..|+... .....+.++|.+++++++..++|++++++|+....+.+
T Consensus 6 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~ 84 (364)
T 3e82_A 6 NTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA 84 (364)
T ss_dssp -CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4589999999 999994 88877774 8999988776542 12345789999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeC-CCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCIT-EGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iT-tG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++ |+|-- -..+.+|..+|.+++++-.+
T Consensus 85 ~~al~aGk~-Vl~EKPla~~~~e~~~l~~~a~~~g~ 119 (364)
T 3e82_A 85 RLALNAGKH-VVVDKPFTLDMQEARELIALAEEKQR 119 (364)
T ss_dssp HHHHHTTCE-EEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCc-EEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence 999999966 44422 27899999999999987554
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=90.52 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=88.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHH----hCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE----YGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~----~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++.||.|+|+ |.+|+.+++.+.+ .++++++..|+.... +..|++ |.+++|+++..++|++++++|+....+.+
T Consensus 6 ~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~ 82 (294)
T 1lc0_A 6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI 82 (294)
T ss_dssp CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred CcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHH-HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence 4579999999 9999998887765 378899888876543 346788 78999998866899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 83 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 117 (294)
T 1lc0_A 83 RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR 117 (294)
T ss_dssp HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 99999998765542345789999999999976443
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=92.80 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=85.6
Q ss_pred ceEEEEccCCCCcchh-hHHHHHhCCeEeeecCCCCCC-eE---EcCcc-ccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFH-TEQAIEYGTKMVGGVTPKKGG-TE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~-~k~~~~~g~~IVagVdP~~~G-~e---i~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
.||.|+|+ |+||+.+ .+.+.+.++++++..|+.... ++ ..|++ +|++++++++..++|++++++|+....+.+
T Consensus 1 ~~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 79 (332)
T 2glx_A 1 NRWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQT 79 (332)
T ss_dssp CEEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred CeEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHH
Confidence 37999999 9999987 777766789998877765421 11 24676 899999998755799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++-=.-..+.+|..+|.+++++-.+
T Consensus 80 ~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~ 114 (332)
T 2glx_A 80 LAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV 114 (332)
T ss_dssp HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence 99999996554421246799999999999976543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-10 Score=94.85 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=88.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEcCcc-ccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
.||.|+|+ |+||+.+++.+.+. ++++++..|+.... + +..|++ +|.+++++++..++|++++++|+....+.+
T Consensus 3 ~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 81 (344)
T 3ezy_A 3 LRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV 81 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH
Confidence 68999999 99999999988874 89999887765422 1 124665 999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++-=.-.++.++..+|.+++++-.+
T Consensus 82 ~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~ 116 (344)
T 3ezy_A 82 IACAKAKKHVFCEKPLSLNLADVDRMIEETKKADV 116 (344)
T ss_dssp HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 99999997655442238999999999999987544
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-10 Score=93.94 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.||.|+|+ |++|+.+.+.+.+ .++++++.+|+.....+..|++ |.+.+++.+..++|++++++|+....+.+..|+
T Consensus 9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~-~~~~~~l~~~~~~DvViiatp~~~h~~~~~~al 86 (304)
T 3bio_A 9 KIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQP-FRVVSDIEQLESVDVALVCSPSREVERTALEIL 86 (304)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC-------CCTT-SCEESSGGGSSSCCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCC-cCCHHHHHhCCCCCEEEECCCchhhHHHHHHHH
Confidence 479999999 9999999998887 4899988666443221125776 443333332237999999999999999999999
Q ss_pred HcCCCEEEEeC-CCCCHHHHHHHHHHhhhhc
Q 030220 137 EAELDLVVCIT-EGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 137 e~GIk~IV~iT-tG~~~ed~~~l~~~ak~ip 166 (181)
++|++.++--. ++.+.++..+|.+++++-.
T Consensus 87 ~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g 117 (304)
T 3bio_A 87 KKGICTADSFDIHDGILALRRSLGDAAGKSG 117 (304)
T ss_dssp TTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence 99987765422 3789999999999998765
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-10 Score=95.40 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=91.7
Q ss_pred ceEEEEccCCCCcchhhHHHH-H-hCCeEeeecCCCCCC-eE---EcC--ccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGG-TE---HLG--LPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~-~g~~IVagVdP~~~G-~e---i~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.||.|+|+ |+||+.+++.+. + .++++++..|+.... ++ -.| .++|+++++++++.++|++++++|+....+
T Consensus 3 ~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (344)
T 3mz0_A 3 LRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred EEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence 68999999 999999999988 5 489999888876421 11 135 689999999998667999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc--hhhhhh
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF--LNFIMK 175 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~--~~~~~~ 175 (181)
.+..|+++|++.++==--..+.+|..+|.+++++-.+-+ -+|.++
T Consensus 82 ~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r 128 (344)
T 3mz0_A 82 SVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRR 128 (344)
T ss_dssp HHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGG
T ss_pred HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccc
Confidence 999999999654442123789999999999998865533 344443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-09 Score=89.06 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=86.0
Q ss_pred CceEEEEccCCCCcc-hhhHHHHHhCCeEeeecCCCCCCe-----EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~~g~~IVagVdP~~~G~-----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+.||.|+|+ |++|. .+.+.+...++++++..|+...-. +..+.++|.+++++++..++|++++++|+....+.
T Consensus 4 ~~rvgiiG~-G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 82 (336)
T 2p2s_A 4 KIRFAAIGL-AHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL 82 (336)
T ss_dssp CCEEEEECC-SSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred ccEEEEECC-ChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH
Confidence 478999999 99996 566666556899988777654321 12378999999999986689999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=--..+.+|..+|.+++++-.+
T Consensus 83 ~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (336)
T 2p2s_A 83 ALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR 118 (336)
T ss_dssp HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999997654421245788999999999976544
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=94.07 Aligned_cols=108 Identities=11% Similarity=-0.020 Sum_probs=86.5
Q ss_pred CceEEEEccCCCCcc-hhhH-HHHH-hCCeEeeecCCCCCC----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGT-FHTE-QAIE-YGTKMVGGVTPKKGG----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k-~~~~-~g~~IVagVdP~~~G----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+.||.|+|+ |+||+ .+.+ .+.. .++++++..|+.... .+..|+++|++++++++..++|++++++|+....+
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (345)
T 3f4l_A 2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345)
T ss_dssp CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred ceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 468999999 99998 5888 4344 489999888765422 12357899999999998667999999999999999
Q ss_pred HHHHHHHcCCCEEEEe-CCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCI-TEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~i-TtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++ |+|- --..+.+|..+|.+++++-.+
T Consensus 81 ~~~~al~aGk~-Vl~EKP~a~~~~e~~~l~~~a~~~g~ 117 (345)
T 3f4l_A 81 YAKRALEAGKN-VLVEKPFTPTLAQAKELFALAKSKGL 117 (345)
T ss_dssp HHHHHHHTTCE-EEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCc-EEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999954 4441 126899999999999987544
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=94.82 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=89.3
Q ss_pred CCceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCCC--eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~G--~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
++.||.|+|+ |++|+. +.+.+.+. ++++++..|+.... .+..+.++|++++++++..++|++++++|+....+.+
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (358)
T 3gdo_A 4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT 82 (358)
T ss_dssp TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3579999999 999994 88887774 89999887765421 2245789999999999877899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 83 ~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~ 117 (358)
T 3gdo_A 83 MACIQAGKHVVMEKPMTATAEEGETLKRAADEKGV 117 (358)
T ss_dssp HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 99999996555431126899999999999977543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=91.92 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=87.3
Q ss_pred CceEEEEccCCCCcch-hhHHHHH-hCCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTF-HTEQAIE-YGTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~-~~k~~~~-~g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+.||.|+|+ |+||+. +.+.+.+ .++++++..|+.... + +..|++.|++++++++ ++|++++++|+....+.
T Consensus 6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~--~~D~V~i~tp~~~h~~~ 82 (308)
T 3uuw_A 6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK--KCDCIFLHSSTETHYEI 82 (308)
T ss_dssp CCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT--TCSEEEECCCGGGHHHH
T ss_pred cCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh--cCCEEEEeCCcHhHHHH
Confidence 478999999 999995 8888877 589999888876421 1 1248888999999998 89999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+..|+++|++.++==--..+.+|..+|.+++++-.
T Consensus 83 ~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g 117 (308)
T 3uuw_A 83 IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN 117 (308)
T ss_dssp HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999874432235689999999999998754
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=92.83 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=87.7
Q ss_pred CceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+.||.|+|+ |++|+. +.+.+.+. ++++++..|+.... ++..+.++|++++++++..++|++++++|+....+
T Consensus 5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 83 (359)
T 3m2t_A 5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE 83 (359)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH
T ss_pred cceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence 478999999 999994 78888774 89999887765321 12246789999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 84 ~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~ 120 (359)
T 3m2t_A 84 MGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDV 120 (359)
T ss_dssp HHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence 9999999997744421236899999999999976443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=92.04 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=88.9
Q ss_pred eccCCceEEEEccCC-CCcchhhHHHHHh--CCeEeeecCCCCCC-eE---EcCc-cccccHHHHhhccCCcEEEEeeCh
Q 030220 54 FVDKNTRVICQGITG-KNGTFHTEQAIEY--GTKMVGGVTPKKGG-TE---HLGL-PVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 54 ~~~~~~rViVvGatG-kmG~~~~k~~~~~--g~~IVagVdP~~~G-~e---i~Gv-PVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
.-++..||.|+|+ | .+|+.+++.+.+. ++++++..|+.... ++ -.|+ ++|++++|+++..++|++++++|+
T Consensus 14 ~~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 92 (340)
T 1zh8_A 14 KPLRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 92 (340)
T ss_dssp --CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred CCCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 4456689999999 8 8999999988774 68899887766421 11 1355 899999999987689999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
....+.+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 93 ~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 134 (340)
T 1zh8_A 93 ELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEK 134 (340)
T ss_dssp GGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999997554432235799999999999976543
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=93.50 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=90.4
Q ss_pred CCceEEEEcc---CCCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCcc---ccccHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGI---TGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGa---tGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvP---Vy~sl~e~~~~~~~DVaIdfVP 124 (181)
++.||.|+|+ .|.+|+.+++.+.+. ++++|+..|+.... + +..|+| +|.+++++++..++|++++++|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 4579999999 599999999998885 78999888865421 1 124666 9999999998668999999999
Q ss_pred hHHHHHHHHHHHHcCC-----CEEEEe-CCCCCHHHHHHHHHHhhhhch
Q 030220 125 PPFAAAAIMEAMEAEL-----DLVVCI-TEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 125 p~~a~~~~~eaie~GI-----k~IV~i-TtG~~~ed~~~l~~~ak~ipv 167 (181)
+....+.+..|+++|. +.|+|- .-..+.+|..+|.+++++-.+
T Consensus 99 ~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~ 147 (438)
T 3btv_A 99 VASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGV 147 (438)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCC
Confidence 9999999999999993 556553 356899999999999977544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=96.93 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred CCceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCC-e---EEcCcc-----ccccHHHHhhccCCcEEEEeeCh
Q 030220 57 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-----VFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvP-----Vy~sl~e~~~~~~~DVaIdfVPp 125 (181)
++.||.|+|+ |+||+ .+.+.+.+. ++++++..|+.... + +..|++ +|.+++++++..++|++++++|+
T Consensus 82 ~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 82 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred CceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 4579999999 99997 899888774 78999887765421 1 113555 79999999876689999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
....+.+..|+++|++.++-=.-.++.+|..+|.+++++-.+
T Consensus 161 ~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~ 202 (433)
T 1h6d_A 161 SLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 202 (433)
T ss_dssp GGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999997644321246899999999999977554
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-09 Score=89.30 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=86.6
Q ss_pred CceEEEEccCCCCcc-hhhHHHHHhCCeEeeecCCCCCC-----eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGG-----TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~~g~~IVagVdP~~~G-----~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+.||.|+|+ |.+|. .+.+.+...++++++..|+.... ++..+.++|.+++|+++..++|++++++|+....+.
T Consensus 26 ~irvgiiG~-G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~ 104 (361)
T 3u3x_A 26 ELRFAAVGL-NHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAEL 104 (361)
T ss_dssp CCEEEEECC-CSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHH
T ss_pred CcEEEEECc-CHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 479999999 99986 45566666799999988876421 112347899999999987679999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 105 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 140 (361)
T 3u3x_A 105 AIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGR 140 (361)
T ss_dssp HHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999997655432236889999999999977443
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=93.63 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=88.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh---------CCeEeeecCCCCCC-e---EEcCc-cccccHHHHhhccCCcEEEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGG-T---EHLGL-PVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~---------g~~IVagVdP~~~G-~---ei~Gv-PVy~sl~e~~~~~~~DVaId 121 (181)
++..||.|+|+ |.+|+.+++.+.+. +.+|||..|+.... + +-.|+ ++|++++|++++.++|++++
T Consensus 24 s~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I 102 (412)
T 4gqa_A 24 SARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDI 102 (412)
T ss_dssp -CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEE
T ss_pred cccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEE
Confidence 34479999999 99999998887663 56899887776421 1 11355 59999999998778999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 122 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|+..-.+.+..|+++|++.++==-=..+.+|..+|.++|++-.+
T Consensus 103 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~ 148 (412)
T 4gqa_A 103 TSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGV 148 (412)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999997655432346899999999999976543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=87.57 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=86.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--CeEE------cC--ccccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEH------LG--LPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--G~ei------~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+.||.|+|+ |.+|+.+.+.+ ..++++++..|+... .+.. .| .++|++++|+++..++|++++++|+..
T Consensus 2 ~~rvgiiG~-G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 2 SLKICVIGS-SGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp CEEEEEECS-SSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred ceEEEEEcc-chhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 368999999 88888887777 668999998886541 1111 14 489999999998778999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..+.+..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 119 (337)
T 3ip3_A 80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRN 119 (337)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999998755422245789999999999987543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-09 Score=94.52 Aligned_cols=108 Identities=14% Similarity=0.201 Sum_probs=85.8
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHH-
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFA- 128 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a- 128 (181)
.+..||+|+|+ | +|+.+.+.+.+. ++++||.+|++... + +-.|+|+|.|++++++ ++|++++.+|....
T Consensus 5 ~~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~--~~D~v~i~~p~~~h~ 80 (372)
T 4gmf_A 5 SPKQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITG--MPDIACIVVRSTVAG 80 (372)
T ss_dssp --CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCS--CCSEEEECCC--CTT
T ss_pred CCCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhc--CCCEEEEECCCcccc
Confidence 34689999998 8 899999988773 79999988876532 1 1258999999999987 79999999998766
Q ss_pred ---HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 129 ---AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 129 ---~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.+.+..|+++|++.++= =. ++.+|..+|.++|++-.+-+
T Consensus 81 ~~~~~~a~~al~aGkhVl~E-KP-l~~~ea~~l~~~A~~~g~~~ 122 (372)
T 4gmf_A 81 GAGTQLARHFLARGVHVIQE-HP-LHPDDISSLQTLAQEQGCCY 122 (372)
T ss_dssp SHHHHHHHHHHHTTCEEEEE-SC-CCHHHHHHHHHHHHHHTCCE
T ss_pred hhHHHHHHHHHHcCCcEEEe-cC-CCHHHHHHHHHHHHHcCCEE
Confidence 89999999999876654 44 78899999999998765543
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=89.81 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=86.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCC-eE---EcCcc-ccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TE---HLGLP-VFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G-~e---i~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.||.|+|+ |++|+.+++.+.+. ++++++..|+.... ++ -.|+| +|++++++++..++|++++++|+....+
T Consensus 3 ~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 81 (334)
T 3ohs_X 3 LRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA 81 (334)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred cEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 68999998 99999999888763 36899888876421 11 24775 8999999998778999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 82 ~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~ 118 (334)
T 3ohs_X 82 AVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118 (334)
T ss_dssp HHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999996644321236799999999999977543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=93.36 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=84.2
Q ss_pred CCceEEEEccCCCCcch-hh----HHHHHh-CCeE-----------eeecCCCCCCe--EEcCcc-ccccHHHHhhccCC
Q 030220 57 KNTRVICQGITGKNGTF-HT----EQAIEY-GTKM-----------VGGVTPKKGGT--EHLGLP-VFNSVAEAKAETKA 116 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~----k~~~~~-g~~I-----------VagVdP~~~G~--ei~GvP-Vy~sl~e~~~~~~~ 116 (181)
+..||.|+|++|.||+. +. +.+.+. ++++ |+..|+.+... +-.|+| +|++++|+++..++
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~i 84 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKND 84 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSC
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCC
Confidence 34789999966999997 88 777764 5554 33344433210 125775 89999999987789
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 117 DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
|++++++|+....+.+..|+++|++.++-=--..+.+|..+|.++|++-.+
T Consensus 85 D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~ 135 (383)
T 3oqb_A 85 TMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGV 135 (383)
T ss_dssp CEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred CEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999997754321236899999999999977543
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=94.02 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=58.5
Q ss_pred cCccccccHHHHhhcc-CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 99 LGLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 99 ~GvPVy~sl~e~~~~~-~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.++|||++..++.+.. .+|++|++||++.+.+++++|.++|++ +|+||+||+.+++.+|.++|++-
T Consensus 19 ~~~Pv~~~~~~~~~~p~~~DlavI~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~~~A~~~ 85 (480)
T 3dmy_A 19 QALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRAREK 85 (480)
T ss_dssp -CCEEESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHHHHc
Confidence 4799999877775543 799999999999999999999999999 78899999999999999999764
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=90.04 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=87.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE------cC---ccccc----cHHHHhhccCCcEEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH------LG---LPVFN----SVAEAKAETKANASVI 121 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei------~G---vPVy~----sl~e~~~~~~~DVaId 121 (181)
++.||.|+|+ |.||+.+++.+.+. ++++++..|+.... ++. .| .++|. +++|+++..++|++++
T Consensus 19 ~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i 97 (444)
T 2ixa_A 19 KKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV 97 (444)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred CCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence 3579999998 99999999988874 89999887765421 111 24 57899 9999998668999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 122 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|+....+.+..|+++|++.++==--..+.+|..+|.++|++-.+
T Consensus 98 ~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~ 143 (444)
T 2ixa_A 98 SSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGV 143 (444)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999997544321135789999999999976543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-08 Score=91.47 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=89.1
Q ss_pred CCceEEEEccC---CCCcchhhHHHHHh--CCeEeeecCCCCCC-e---EEcCcc---ccccHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGIT---GKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGat---GkmG~~~~k~~~~~--g~~IVagVdP~~~G-~---ei~GvP---Vy~sl~e~~~~~~~DVaIdfVP 124 (181)
++.||.|+|+. |.+|+.+++.+.+. ++++++..|+.... + +..|+| +|.+++|+++..++|++++++|
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence 34789999994 89999999988874 88999888865421 1 124676 9999999997668999999999
Q ss_pred hHHHHHHHHHHHHcCC-----CEEEEeC-CCCCHHHHHHHHHHhhhhc
Q 030220 125 PPFAAAAIMEAMEAEL-----DLVVCIT-EGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 125 p~~a~~~~~eaie~GI-----k~IV~iT-tG~~~ed~~~l~~~ak~ip 166 (181)
+....+.+..|+++|+ +.|+|=- -..+.+|..+|.+++++-.
T Consensus 118 ~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g 165 (479)
T 2nvw_A 118 VPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 165 (479)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 9999999999999993 6666623 3578999999999997654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=87.22 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=85.7
Q ss_pred CceEEEEccCCC---CcchhhHHHHHh-CCeEeee-cCCCCCC-eE---EcCc---cccccHHHHhhc-----cCCcEEE
Q 030220 58 NTRVICQGITGK---NGTFHTEQAIEY-GTKMVGG-VTPKKGG-TE---HLGL---PVFNSVAEAKAE-----TKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGk---mG~~~~k~~~~~-g~~IVag-VdP~~~G-~e---i~Gv---PVy~sl~e~~~~-----~~~DVaI 120 (181)
..||.|+|+ |. ||+.+...+... +++++++ .|+.... ++ -.|+ ++|++++|+++. .++|+++
T Consensus 12 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 90 (398)
T 3dty_A 12 PIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398)
T ss_dssp CEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred cceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence 479999999 99 999999887775 6899984 5665321 11 2477 699999999875 3599999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+++|+....+.+..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 91 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 137 (398)
T 3dty_A 91 IATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNR 137 (398)
T ss_dssp EESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTC
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999997544311125899999999999977554
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=87.20 Aligned_cols=103 Identities=10% Similarity=-0.031 Sum_probs=80.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--------CCeEeeecCCCCCC-eE---EcCc-cccccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-TE---HLGL-PVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--------g~~IVagVdP~~~G-~e---i~Gv-PVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
.||.|+|+ |.+|+.+.+.+.+. +.+|++..|+.... ++ -.|+ ++|+|.+|+++..++|++++++|+
T Consensus 7 lrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~ 85 (390)
T 4h3v_A 7 LGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG 85 (390)
T ss_dssp EEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred CcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 58999999 99999998877663 23788877765421 11 1365 589999999987789999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
..-.+.+..|+++|++.++==-=..+.+|..+|.+++
T Consensus 86 ~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~ 122 (390)
T 4h3v_A 86 DSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAA 122 (390)
T ss_dssp GGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHH
Confidence 9999999999999976554322457889999986664
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-08 Score=74.90 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=71.9
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCC--CCCeEEcCccccc--cHHHHhhccCCcEEEEeeCh---HH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTEHLGLPVFN--SVAEAKAETKANASVIYVPP---PF 127 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~--~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp---~~ 127 (181)
++..+++|+|+ |..|+.+++.+.+. |++++|.+|.. ..|..+.|+||+. ++.++.+++++|.+++.+|. +.
T Consensus 2 ~~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~ 80 (141)
T 3nkl_A 2 NAKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQ 80 (141)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTSCHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence 34578999999 99999999988875 89999988754 3456788999987 56666667789999999985 34
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 030220 128 AAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~ 145 (181)
..+.++.|.+.|++..+.
T Consensus 81 ~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 81 KKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHcCCeEEEC
Confidence 588899999999997665
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-09 Score=93.56 Aligned_cols=109 Identities=13% Similarity=-0.029 Sum_probs=86.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC-eE----E----------------------cCccccccHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H----------------------LGLPVFNSVA 108 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G-~e----i----------------------~GvPVy~sl~ 108 (181)
+..||.|+|+ |+||+.+.+.+.+ .++++++..|+.... ++ . .+.++|++.+
T Consensus 22 k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e 100 (446)
T 3upl_A 22 KPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND 100 (446)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred CceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence 4589999999 9999999988877 489999877754321 00 0 1256899999
Q ss_pred HHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 109 EAKAETKANASVIYVPP-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 109 e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++..++|++++++|. ....+.+..|+++|.+.++. ...+..++..+|.++|++-.+
T Consensus 101 eLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~-nk~l~~~eg~eL~~~A~e~Gv 159 (446)
T 3upl_A 101 LILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMM-NVEADVTIGPYLKAQADKQGV 159 (446)
T ss_dssp HHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEec-CcccCHHHHHHHHHHHHHhCC
Confidence 99987689999999974 67899999999999988764 555667788899999987554
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=87.80 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=85.8
Q ss_pred CCceEEEEccCCC---CcchhhHHHHHh-CCeEee-ecCCCCCC-eE---EcCc---cccccHHHHhhc-----cCCcEE
Q 030220 57 KNTRVICQGITGK---NGTFHTEQAIEY-GTKMVG-GVTPKKGG-TE---HLGL---PVFNSVAEAKAE-----TKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGk---mG~~~~k~~~~~-g~~IVa-gVdP~~~G-~e---i~Gv---PVy~sl~e~~~~-----~~~DVa 119 (181)
+..||.|+|+ |+ +|+.+.+.+... ++++++ ..|+.... ++ -.|+ ++|++++|+++. .++|++
T Consensus 36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence 3579999999 99 999998887775 689987 45665321 11 2477 599999999875 469999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 120 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++++|+....+.+..|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 115 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 162 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDA 162 (417)
T ss_dssp EECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSS
T ss_pred EECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998755431236899999999999977543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-08 Score=84.13 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=86.1
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
....++||+++|+ |++|+.+++. . ++++++..+ .+.+ ++ |+.++++++++++ ++|++|-+.+++++.+.+.
T Consensus 8 ~~~~~~rV~i~G~-GaIG~~v~~~--~-~leLv~v~~-~k~g-el-gv~a~~d~d~lla--~pD~VVe~A~~~av~e~~~ 78 (253)
T 1j5p_A 8 HHHHHMTVLIIGM-GNIGKKLVEL--G-NFEKIYAYD-RISK-DI-PGVVRLDEFQVPS--DVSTVVECASPEAVKEYSL 78 (253)
T ss_dssp ---CCCEEEEECC-SHHHHHHHHH--S-CCSEEEEEC-SSCC-CC-SSSEECSSCCCCT--TCCEEEECSCHHHHHHHHH
T ss_pred cccccceEEEECc-CHHHHHHHhc--C-CcEEEEEEe-cccc-cc-CceeeCCHHHHhh--CCCEEEECCCHHHHHHHHH
Confidence 4456799999999 9999999998 4 999999888 6655 45 8888999999985 8999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCC--CHHHHHHHHHHhhhhc
Q 030220 134 EAMEAELDLVVCITEGI--PQHDMVINFTRVNILL 166 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~--~~ed~~~l~~~ak~ip 166 (181)
.++++|+..|+. +.|. ..+-.++|+++|++-.
T Consensus 79 ~iL~aG~dvv~~-S~gaLad~~l~~~L~~aA~~gg 112 (253)
T 1j5p_A 79 QILKNPVNYIII-STSAFADEVFRERFFSELKNSP 112 (253)
T ss_dssp HHTTSSSEEEEC-CGGGGGSHHHHHHHHHHHHTCS
T ss_pred HHHHCCCCEEEc-ChhhhcCHHHHHHHHHHHHHCC
Confidence 999999999987 7774 5555789999997643
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.55 E-value=9e-08 Score=81.19 Aligned_cols=106 Identities=7% Similarity=-0.005 Sum_probs=81.0
Q ss_pred ceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCC-e---EEcCccc-cccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPV-FNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G-~---ei~GvPV-y~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||.|+|+ |+||+ .+.+.+.+. +++++ ..|+.... + +..|++. |.+..+.+ ..++|++++++|+....+.
T Consensus 3 ~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~~~~l-~~~~D~V~i~tp~~~h~~~ 79 (323)
T 1xea_A 3 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVL-QYGVDAVMIHAATDVHSTL 79 (323)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGG-GGCCSEEEECSCGGGHHHH
T ss_pred cEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCCccccCHHHHh-hcCCCEEEEECCchhHHHH
Confidence 68999999 99998 688888774 78888 77765421 1 1246774 55544445 3489999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 IMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+..|+++|++.++-=.-..+.++..+|.+++++-.+
T Consensus 80 ~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~ 115 (323)
T 1xea_A 80 AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ 115 (323)
T ss_dssp HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCC
Confidence 999999998876542346789999999999976543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-07 Score=81.01 Aligned_cols=108 Identities=13% Similarity=0.017 Sum_probs=81.9
Q ss_pred CceEEEEccCCCCcchhhHHHHH---------hCCeEeeecCCCCCCe-EE----------cCccccc--cHHHHhhccC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---------YGTKMVGGVTPKKGGT-EH----------LGLPVFN--SVAEAKAETK 115 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---------~g~~IVagVdP~~~G~-ei----------~GvPVy~--sl~e~~~~~~ 115 (181)
+.||.|+|+ |++|+.+++.+.+ .++++++..|+...-. ++ ...++|+ +++++++..+
T Consensus 2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 478999998 9999999887765 3788998887653210 00 1235777 9999998778
Q ss_pred CcEEEEeeChHH----HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 116 ANASVIYVPPPF----AAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 116 ~DVaIdfVPp~~----a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+|++++++|++. +.+.+..|+++|++.|.. ..+.-..+..+|.++|++-.+
T Consensus 81 iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~-NKkpla~~~~eL~~~A~~~g~ 135 (327)
T 3do5_A 81 YDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS-NKGPLVAEFHGLMSLAERNGV 135 (327)
T ss_dssp CSEEEECCCCC----CHHHHHHHHHTTTCEEEEC-CSHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCcccchhHHHHHHHHHHCCCeEEec-CchhhHHHHHHHHHHHHhhCC
Confidence 999999999876 599999999999987765 334334578889999877544
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-07 Score=81.70 Aligned_cols=107 Identities=15% Similarity=-0.019 Sum_probs=81.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--------CCeEeeecCCCCCC-eE-E-----------cCcc-ccc---cHHHHhh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-TE-H-----------LGLP-VFN---SVAEAKA 112 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--------g~~IVagVdP~~~G-~e-i-----------~GvP-Vy~---sl~e~~~ 112 (181)
+.||.|+|+ |.+|+.+++.+.+. ++++++..|+...- .+ + .+++ +|+ ++++++
T Consensus 6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll- 83 (331)
T 3c8m_A 6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL- 83 (331)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence 478999999 99999998887663 47888877755421 01 1 1343 666 899998
Q ss_pred ccCCcEEEEeeChH----HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 113 ETKANASVIYVPPP----FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 113 ~~~~DVaIdfVPp~----~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
..++|++++++|+. .+.+.+..|+++|++.|.+ .++.-.++..+|.++|++-.+
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvta-nK~pla~~~~eL~~~A~~~gv 141 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKETFENGKDVVTA-NKSGLANFWPEIMEYARSNNR 141 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEEC-CCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEec-CchhhHHHHHHHHHHHHHcCC
Confidence 66899999999995 8999999999999887764 444445778899999876544
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=80.40 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=81.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-------CCeEeeecCCCCCC--eEE-----------cC-cc--ccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-------GTKMVGGVTPKKGG--TEH-----------LG-LP--VFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-------g~~IVagVdP~~~G--~ei-----------~G-vP--Vy~sl~e~~~~~ 114 (181)
+.||+|+|+ |++|+.+++.+.+. ++++++..|..... .++ .| ++ .| +..++++..
T Consensus 4 ~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~~ 81 (325)
T 3ing_A 4 EIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMGE 81 (325)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTTS
T ss_pred eEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcCC
Confidence 478999998 99999999987763 67899887765310 000 12 33 24 667777767
Q ss_pred CCcEEEEeeCh----HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 115 KANASVIYVPP----PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 115 ~~DVaIdfVPp----~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
++|++++++|+ +.+.+.+.+|+++|++.|.+ ..+.-.++..+|.++|++-.+-
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta-NK~~la~~~~eL~~lA~~~g~~ 138 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA-NKSGLANKWHDIMDSANQNSKY 138 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC-CCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc-CchhHHHHHHHHHHHHHHcCCe
Confidence 89999999996 45689999999999998876 5555568899999999876553
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.3e-08 Score=87.58 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=86.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHH----------hCCeEeeecCCCCCC-eE-EcCccccccHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE----------YGTKMVGGVTPKKGG-TE-HLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~----------~g~~IVagVdP~~~G-~e-i~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
+..||.|+|+ |.+|+.+++.+.+ .++++++..|+.... .. ..+.++|++++++++..++|++++++|
T Consensus 9 k~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 9 KPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp SCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred CcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCC
Confidence 3478999998 9999988776542 367899887765421 11 246789999999998778999999999
Q ss_pred h-HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 125 P-PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 125 p-~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
+ +.+.+.+..|+++|++.+.. -.....++..+|.++|++-.+-
T Consensus 88 ~~~~h~~~~~~AL~aGKhVvte-nkal~a~~~~eL~~~A~~~gv~ 131 (444)
T 3mtj_A 88 GLEPARELVMQAIANGKHVVTA-NKHLVAKYGNEIFAAAQAKGVM 131 (444)
T ss_dssp SSTTHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHcCCEEEEC-CcccCHHHHHHHHHHHHHhCCe
Confidence 6 89999999999999887765 4466678889999999775443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-07 Score=74.91 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=76.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
++||.|+|+ |+||+.+.+.+.+.|+ +|. ..|+.... +. -.|+.++.+..++.+ ++|++|+.|||+...+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~-v~dr~~~~~~~l~~~~gi~~~~~~~~~~~--~aDvVilav~p~~~~~ 78 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRIC-VTNRSLDKLDFFKEKCGVHTTQDNRQGAL--NADVVVLAVKPHQIKM 78 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEE-EECSSSHHHHHHHHTTCCEEESCHHHHHS--SCSEEEECSCGGGHHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE-EEeCCHHHHHHHHHHcCCEEeCChHHHHh--cCCeEEEEeCHHHHHH
Confidence 468999999 9999999999999887 544 45554321 11 137888889888887 7999999999999999
Q ss_pred HHHHHHHc---CCCEEEEeCCCCCHHHHHHHH
Q 030220 131 AIMEAMEA---ELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 131 ~~~eaie~---GIk~IV~iTtG~~~ed~~~l~ 159 (181)
+++++... +-..|+.++.|++.+++.+..
T Consensus 79 vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l 110 (280)
T 3tri_A 79 VCEELKDILSETKILVISLAVGVTTPLIEKWL 110 (280)
T ss_dssp HHHHHHHHHHTTTCEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEEEecCCCCHHHHHHHc
Confidence 99887654 333778789999988776654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.8e-08 Score=85.19 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=70.3
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC--CCCCCeEEcCcccccc--HHHHhhccCCcEEEEeeChHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd--P~~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++.++|+|+|+ |..|+.+++.+.+.|++++|.+| |.+.|+.+.|+||++. +.++ +..+++.+++.+ ...+++
T Consensus 50 ~~~~~v~IiGA-G~~G~~l~~~l~~~g~~ivgfiDdd~~~~g~~i~GipV~~~~~l~~~-~~~~~~~viiai--~~r~~i 125 (409)
T 2py6_A 50 GNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTEL-ATHDRDLVALNT--CRYDGP 125 (409)
T ss_dssp GGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHH-HHTCTTEEEEEC--CCSHHH
T ss_pred CCCCeEEEEeC-CHHHHHHHHHHHHCCCEEEEEEeCCcccccCEECCEEEECHHHHHHH-HhCCCCEEEEec--cHHHHH
Confidence 56678999999 99999999987777999999877 6777778999999984 3333 345678888888 456889
Q ss_pred HHHHHHcCCCEEEEe
Q 030220 132 IMEAMEAELDLVVCI 146 (181)
Q Consensus 132 ~~eaie~GIk~IV~i 146 (181)
++.+.+.|++.++.|
T Consensus 126 ~~~l~~~g~~~il~f 140 (409)
T 2py6_A 126 KRFFDQICRTHGIPH 140 (409)
T ss_dssp HHHHHHHHHHTTCCE
T ss_pred HHHHHhcCCCEEEec
Confidence 999999988888776
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-07 Score=76.94 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=72.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||.|+|+ |+||+.+.+.+.+.|+++|..+|+.... +. ..|+.++.+++++.+ ++|++++++|+....+++++
T Consensus 11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~av~~~~~~~v~~~ 87 (266)
T 3d1l_A 11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNP--YAKLYIVSLKDSAFAELLQG 87 (266)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCS--CCSEEEECCCHHHHHHHHHH
T ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhc--CCCEEEEecCHHHHHHHHHH
Confidence 57999999 9999999999988899866677765321 01 137788889888776 79999999999998888877
Q ss_pred HHHc--CCCEEEEeCCCCCHHHH
Q 030220 135 AMEA--ELDLVVCITEGIPQHDM 155 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~~~ed~ 155 (181)
+.+. .=+.|+..++|++.+.+
T Consensus 88 l~~~~~~~~ivv~~s~~~~~~~l 110 (266)
T 3d1l_A 88 IVEGKREEALMVHTAGSIPMNVW 110 (266)
T ss_dssp HHTTCCTTCEEEECCTTSCGGGS
T ss_pred HHhhcCCCcEEEECCCCCchHHH
Confidence 6542 12357777899997663
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=70.63 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||.|+|+ |+||+.+.+.+.+.| .++. .+|+.... .|+.++.+.+++.+ ++|++++++|+..+.+++++
T Consensus 5 m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~~~---~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~~~ 77 (262)
T 2rcy_A 5 IKLGFMGL-GQMGSALAHGIANANIIKKENLF-YYGPSKKN---TTLNYMSSNEELAR--HCDIIVCAVKPDIAGSVLNN 77 (262)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHHTSSCGGGEE-EECSSCCS---SSSEECSCHHHHHH--HCSEEEECSCTTTHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCCCCCeEE-EEeCCccc---CceEEeCCHHHHHh--cCCEEEEEeCHHHHHHHHHH
Confidence 57999999 999999999998888 4544 55654421 57888888888877 79999999999999999887
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHH
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l 158 (181)
+... .-+.|+..+.|++.+.+.++
T Consensus 78 l~~~l~~~~vv~~~~gi~~~~l~~~ 102 (262)
T 2rcy_A 78 IKPYLSSKLLISICGGLNIGKLEEM 102 (262)
T ss_dssp SGGGCTTCEEEECCSSCCHHHHHHH
T ss_pred HHHhcCCCEEEEECCCCCHHHHHHH
Confidence 6543 23457777999999765554
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-07 Score=73.24 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=72.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
++||.|+|+ |+||+.+.+.+.+.|.++ ..+|+.... +.+ .|+.++.+++++.+ ++|++++++|+....++++
T Consensus 3 ~m~i~iiG~-G~mG~~~a~~l~~~g~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~Vi~~v~~~~~~~v~~ 78 (259)
T 2ahr_A 3 AMKIGIIGV-GKMASAIIKGLKQTPHEL-IISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLK 78 (259)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTSSCEE-EEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHT
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCCeE-EEECCCHHHHHHHHHHcCCEeeCCHHHHHh--cCCEEEEEeCcHhHHHHHH
Confidence 468999998 999999999988888654 466654311 111 37888999999887 8999999999998888877
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
++ ..|. .++..+.|++.+++.++.+
T Consensus 79 ~l-~~~~-~vv~~~~~~~~~~l~~~~~ 103 (259)
T 2ahr_A 79 PL-HFKQ-PIISMAAGISLQRLATFVG 103 (259)
T ss_dssp TS-CCCS-CEEECCTTCCHHHHHHHHC
T ss_pred Hh-ccCC-EEEEeCCCCCHHHHHHhcC
Confidence 64 3443 5666568999887665543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=61.32 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=68.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC-eEE--cCcccc-------ccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH--LGLPVF-------NSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G-~ei--~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+++|+|+|+ |.+|+.+++.+.+.| .+++. +++.... ... .++..+ .+++++++ ++|++|.++|+.
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~-~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~ 80 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTV-ADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF 80 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEE-EESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence 468999999 999999999999988 77653 3332210 000 122221 24555555 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
.....++.|.+.|++.+.. ++.+. ...++.++++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~-~~~~~--~~~~~~~~~~ 114 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYFDL-TEDVA--ATNAVRALVE 114 (118)
T ss_dssp GHHHHHHHHHHTTCEEECC-CSCHH--HHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCEEEe-cCcHH--HHHHHHHHHH
Confidence 9999999999999987764 54333 4445555544
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-07 Score=72.91 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=69.9
Q ss_pred CeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 51 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 51 ~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
.++.+..++||.|+|+ |+||+.+.+.+.+.|.+++...|++... +++ .|+.++.+..+..+ ++|++++.+|+.
T Consensus 16 ~~~~~m~mmkI~IIG~-G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDvVilavp~~ 92 (220)
T 4huj_A 16 ENLYFQSMTTYAIIGA-GAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDAL--QADVVILAVPYD 92 (220)
T ss_dssp -CTTGGGSCCEEEEEC-HHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHT--TSSEEEEESCGG
T ss_pred cchhhhcCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHh--cCCEEEEeCChH
Confidence 3344455689999997 9999999999999899877646655321 111 36666655555555 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
...++++++....=+.|+.++.|++
T Consensus 93 ~~~~v~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 93 SIADIVTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp GHHHHHTTCSCCTTCEEEECCCCBC
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCC
Confidence 9999888753322246777788884
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=70.53 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=76.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI-- 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~-- 132 (181)
+||.|+|+ |+||+.+.+.+.+.|++++ ..|+.... +.+ .|+.++++++|+.+ ++|++++++| +..+.+++
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~~~ 77 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVT-IWNRSPEKAEELAALGAERAATPCEVVE--SCPVTFAMLADPAAAEEVCFG 77 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEcCCHHHHHHHHcC
Confidence 57999999 9999999999999999876 45554321 111 37888899999987 7899999999 67777777
Q ss_pred -HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 -MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 -~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++..+. .- +.|+. +++.+..+..++.+..++..+
T Consensus 78 ~~~l~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pef_A 78 KHGVLEGIGEGRGYVD-MSTVDPATSQRIGVAVVAKGG 114 (287)
T ss_dssp TTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTC
T ss_pred cchHhhcCCCCCEEEe-CCCCCHHHHHHHHHHHHHhCC
Confidence 554443 11 34555 778888888888877765433
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.3e-07 Score=78.93 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=77.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---------CCeEeeecCCCCCC-eEEcCccccccHHHHhhccCCcEEEEeeChH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGG-TEHLGLPVFNSVAEAKAETKANASVIYVPPP- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---------g~~IVagVdP~~~G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~- 126 (181)
+.||.|+|+ |.+|+.+++.+.+. ++++++..|..... ..+..-.+|+++++++ ++|++++++|..
T Consensus 3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll---~iDvVve~t~~~~ 78 (332)
T 2ejw_A 3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL---EADLVVEAMGGVE 78 (332)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT---TCSEEEECCCCSH
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh---CCCEEEECCCCcH
Confidence 368999999 99999999887763 57888876654321 1122235677888877 799999999965
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.+.+.+..|+++|++.|.. .+..-.++..+|.++|++-
T Consensus 79 ~a~~~~~~AL~aGKhVVta-Nkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 79 APLRLVLPALEAGIPLITA-NKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHHHHHHHHHHTTCCEEEC-CHHHHHHSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEC-CchhHHHHHHHHHHHHHhC
Confidence 6789999999999988774 3443336788888888764
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-06 Score=67.98 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=72.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EE--cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EH--LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+||.|+|+ |+||+.+.+.+.+.|++++. .|+.+... ++ .|+. .+.+++.+ ++|++++++|+....+.++
T Consensus 1 M~I~iIG~-G~mG~~la~~l~~~g~~V~~-~~~~~~~~~~~~~~~~g~~--~~~~~~~~--~aDvvi~~v~~~~~~~~~~ 74 (264)
T 1i36_A 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVT-SLEGRSPSTIERARTVGVT--ETSEEDVY--SCPVVISAVTPGVALGAAR 74 (264)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEE-CCTTCCHHHHHHHHHHTCE--ECCHHHHH--TSSEEEECSCGGGHHHHHH
T ss_pred CeEEEEec-hHHHHHHHHHHHHCCCeEEE-eCCccCHHHHHHHHHCCCc--CCHHHHHh--cCCEEEEECCCHHHHHHHH
Confidence 37999998 99999999999988998775 67642211 11 2555 67788777 7999999999987777777
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+..+.--+.|+. ..+.+..+..+|.+..++
T Consensus 75 ~~~~~~~~~vi~-~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 75 RAGRHVRGIYVD-INNISPETVRMASSLIEK 104 (264)
T ss_dssp HHHTTCCSEEEE-CSCCCHHHHHHHHHHCSS
T ss_pred HHHHhcCcEEEE-ccCCCHHHHHHHHHHHhh
Confidence 666543334444 678888888888877654
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=75.42 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=70.5
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCC---CCCeEEc----------Cccccc--cHHHHhhccCCcEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPK---KGGTEHL----------GLPVFN--SVAEAKAETKANAS 119 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~---~~G~ei~----------GvPVy~--sl~e~~~~~~~DVa 119 (181)
+.++||.|+|+||..|+...+.+.+ .++++++..... ..|+.+. ++++.+ +.+++.+ ++|++
T Consensus 2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvv 79 (337)
T 3dr3_A 2 NAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVV 79 (337)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEE
T ss_pred CCceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEE
Confidence 3468999999999999999998888 588988765543 4454321 233332 3344334 79999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030220 120 VIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ 152 (181)
+.++|...+.+.+..++++|++.|-+ +.-|..
T Consensus 80 f~a~p~~~s~~~~~~~~~~g~~vIDl-Sa~fR~ 111 (337)
T 3dr3_A 80 FLATAHEVSHDLAPQFLEAGCVVFDL-SGAFRV 111 (337)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEC-SSTTSS
T ss_pred EECCChHHHHHHHHHHHHCCCEEEEc-CCcccc
Confidence 99999999999999999999987776 877754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.5e-06 Score=69.45 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=75.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeCh-HHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~ 133 (181)
.+||.|+|+ |.||+.+.+.+.+.|++|+ ..|+.... +++ .|+.++.+++|+.+ ++|++++++|. ..+.+++.
T Consensus 31 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~~ 106 (320)
T 4dll_A 31 ARKITFLGT-GSMGLPMARRLCEAGYALQ-VWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLENGAVVQDVLF 106 (320)
T ss_dssp CSEEEEECC-TTTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCSSHHHHHHHHT
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECCCHHHHHHHHc
Confidence 468999999 9999999999999999866 45544311 111 37888899999988 79999999995 56666664
Q ss_pred --HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 134 --EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 134 --eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
..++. .- +.|+. ++..+..+..++.+..++..+.
T Consensus 107 ~~~~~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~ 144 (320)
T 4dll_A 107 AQGVAAAMKPGSLFLD-MASITPREARDHAARLGALGIA 144 (320)
T ss_dssp TTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCE
T ss_pred chhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCE
Confidence 44433 22 34555 6667778888877776654443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-06 Score=69.16 Aligned_cols=107 Identities=15% Similarity=0.041 Sum_probs=75.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~- 132 (181)
++||.|+|+ |+||+.+.+.+.+.|+++. ..|+.... +++ .|+.+.++++|+.+ ++|++++++|.. .+.+++
T Consensus 1 M~~I~iiG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~advvi~~v~~~~~~~~v~~ 76 (287)
T 3pdu_A 1 MTTYGFLGL-GIMGGPMAANLVRAGFDVT-VWNRNPAKCAPLVALGARQASSPAEVCA--ACDITIAMLADPAAAREVCF 76 (287)
T ss_dssp CCCEEEECC-STTHHHHHHHHHHHTCCEE-EECSSGGGGHHHHHHTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHH--cCCEEEEEcCCHHHHHHHHc
Confidence 357999998 9999999999999999866 44544321 111 37888889999987 789999999986 666666
Q ss_pred --HHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 133 --MEAMEA--ELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 133 --~eaie~--GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
+...+. .=+.|+. ++..+..+..++.+..++..+.+
T Consensus 77 ~~~~l~~~l~~g~~vv~-~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pdu_A 77 GANGVLEGIGGGRGYID-MSTVDDETSTAIGAAVTARGGRF 116 (287)
T ss_dssp STTCGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CchhhhhcccCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence 444332 1134555 66677788888877776554443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-06 Score=70.66 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=72.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeE---EcCc--cccccHHH-HhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGL--PVFNSVAE-AKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~e---i~Gv--PVy~sl~e-~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||.|+|+ |.||..+.+.+.+.|+ +|+ ++|+.....+ -.|+ ..+.++++ +.+ ++|++|++||+....+
T Consensus 34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~-~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~--~aDvVilavp~~~~~~ 109 (314)
T 3ggo_A 34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVDLGIIDEGTTSIAKVEDF--SPDFVMLSSPVRTFRE 109 (314)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHTTSCSEEESCTTGGGGG--CCSEEEECSCGGGHHH
T ss_pred CEEEEEee-CHHHHHHHHHHHhCCCCCEEE-EEECCHHHHHHHHHCCCcchhcCCHHHHhhc--cCCEEEEeCCHHHHHH
Confidence 68999997 9999999999999998 665 5665531100 1244 45678888 777 8999999999999999
Q ss_pred HHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 131 AIMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 131 ~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
+++++... .-..+|.-.++.....+..+.+..
T Consensus 110 vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l 142 (314)
T 3ggo_A 110 IAKKLSYILSEDATVTDQGSVKGKLVYDLENIL 142 (314)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred HHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc
Confidence 98887764 333455446677666566666654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-06 Score=72.69 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----EEcCcccccc-----------------HHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNS-----------------VAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----ei~GvPVy~s-----------------l~e~~~~~~~ 116 (181)
.||.|+|+ |++|+.+.+.+.+. ++++++..|...... .-.|+|+|.+ ++++.+ ++
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~--~v 78 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--TS 78 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--HC
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc--CC
Confidence 58999999 99999999988874 899998877542110 0125566543 334333 69
Q ss_pred cEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 117 NASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 117 DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
|++++++|+....+.+..++++|++.|.. +.-
T Consensus 79 DvV~~aTp~~~s~~~a~~~~~aG~kvV~~-sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGVGAQYKPIYLQLQRNAIFQ-GGE 110 (340)
T ss_dssp SEEEECCSTTHHHHHHHHHHHTTCEEEEC-TTS
T ss_pred CEEEECCCCchhHHHHHHHHHcCCeEEEe-CCC
Confidence 99999999999999999999999998876 544
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=66.29 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=76.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~~ 133 (181)
++||.|+|+ |+||+.+.+.+.+.|+++++ ..++.+.. ++ .|+.+.++++|+.+ +|++++++| +..+.++++
T Consensus 15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~~ 89 (296)
T 3qha_A 15 QLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMT-PLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVVG 89 (296)
T ss_dssp CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSH-HHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHHH
Confidence 368999998 99999999999999998653 34444422 12 47888889999875 899999999 557777776
Q ss_pred HHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 134 EAMEAE-L-DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 134 eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
...+.- - +.|+. ++..+.....++.+..++..+.|
T Consensus 90 ~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~~~ 126 (296)
T 3qha_A 90 ELAGHAKPGTVIAI-HSTISDTTAVELARDLKARDIHI 126 (296)
T ss_dssp HHHTTCCTTCEEEE-CSCCCHHHHHHHHHHHGGGTCEE
T ss_pred HHHHhcCCCCEEEE-eCCCCHHHHHHHHHHHHHcCCEE
Confidence 666532 1 34555 66777888888887776554433
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-06 Score=67.86 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=71.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeCh-HHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~e 134 (181)
+||.|+|+ |+||+.+.+.+.+.|.++. .+|+.... +.+ .|+.++.+++++.+ ++|++++++|+ ..+.+++++
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~~vp~~~~~~~v~~~ 76 (296)
T 2gf2_A 1 MPVGFIGL-GNMGNPMAKNLMKHGYPLI-IYDVFPDACKEFQDAGEQVVSSPADVAE--KADRIITMLPTSINAIEAYSG 76 (296)
T ss_dssp CCEEEECC-STTHHHHHHHHHHTTCCEE-EECSSTHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred CeEEEEec-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHhC
Confidence 36999998 9999999999988888865 55554311 111 37788889999877 68999999964 456666554
Q ss_pred H------HHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 135 A------MEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 135 a------ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
. +..| +.|+. +.|++.++..++.+..++
T Consensus 77 ~~~~~~~l~~~-~~vv~-~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 77 ANGILKKVKKG-SLLID-SSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp TTSGGGTCCTT-CEEEE-CSCCCHHHHHHHHHHHHH
T ss_pred chhHHhcCCCC-CEEEE-CCCCCHHHHHHHHHHHHH
Confidence 2 1223 24565 899999988888776654
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=72.11 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC--CCe-------EE-------------cCccccccHHHHhhccC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGT-------EH-------------LGLPVFNSVAEAKAETK 115 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~--~G~-------ei-------------~GvPVy~sl~e~~~~~~ 115 (181)
.||.|+|+ |.+|+.+++.+.+. ++++++..|+.. .+. ++ .++++|.+.++++. +
T Consensus 3 irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~--~ 79 (334)
T 2czc_A 3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--K 79 (334)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--T
T ss_pred cEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc--C
Confidence 68999999 99999999988874 899998766431 110 11 02467888998886 8
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 116 ANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 116 ~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+|++++++|+....+.++.++++|.+ |++ +...
T Consensus 80 vDvV~~aTp~~~h~~~a~~~l~aGk~-Vi~-sap~ 112 (334)
T 2czc_A 80 VDIIVDATPGGIGAKNKPLYEKAGVK-AIF-QGGE 112 (334)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCE-EEE-CTTS
T ss_pred CCEEEECCCccccHHHHHHHHHcCCc-eEe-eccc
Confidence 99999999999999999999999965 555 5444
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.7e-06 Score=70.42 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=76.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCC--CC-eE--EcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK--GG-TE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~--~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.++||.|+|+ |.||+.+.+.+.+.|+ +|+ ..|+.. .. +. -.|+.++++++|+.+ ++|++|++||+....+
T Consensus 23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~ 98 (312)
T 3qsg_A 23 NAMKLGFIGF-GEAASAIASGLRQAGAIDMA-AYDAASAESWRPRAEELGVSCKASVAEVAG--ECDVIFSLVTAQAALE 98 (312)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHHSCCEEE-EECSSCHHHHHHHHHHTTCEECSCHHHHHH--HCSEEEECSCTTTHHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCeEE-EEcCCCCHHHHHHHHHCCCEEeCCHHHHHh--cCCEEEEecCchhHHH
Confidence 4578999999 9999999999999998 554 566541 11 11 147888889999887 7999999999999999
Q ss_pred HHHHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 131 AIMEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 131 ~~~eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
++++..+.- - +.||. .+.++.....++.+..++-
T Consensus 99 ~~~~l~~~l~~~~ivvd-~st~~~~~~~~~~~~~~~~ 134 (312)
T 3qsg_A 99 VAQQAGPHLCEGALYAD-FTSCSPAVKRAIGDVISRH 134 (312)
T ss_dssp HHHHHGGGCCTTCEEEE-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhHhhcCCCCEEEE-cCCCCHHHHHHHHHHHHhh
Confidence 887776542 2 34555 6677777777777766543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.5e-06 Score=69.38 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChH-HHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~ 132 (181)
.++||.|+|+ |+||+.+.+.+.+.|++++ +.|+.... +.+ .|+.+..+++|+.+ ++|++++++|.. .+.+++
T Consensus 20 ~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 20 HMMEVGFLGL-GIMGKAMSMNLLKNGFKVT-VWNRTLSKCDELVEHGASVCESPAEVIK--KCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHH
T ss_pred cCCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeEcCCHHHHHH--hCCEEEEEcCCHHHHHHHH
Confidence 3578999999 9999999999999999866 45544321 111 47888899999987 799999999864 566665
Q ss_pred ---HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 ---MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ---~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.+.+. .- +.|+. ++..+.....++.+..++..+
T Consensus 96 ~~~~~l~~~l~~g~~vv~-~st~~~~~~~~~~~~~~~~g~ 134 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYID-MSTVDAETSLKINEAITGKGG 134 (310)
T ss_dssp HSTTCGGGGCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTC
T ss_pred hCchhhhhccCCCCEEEE-CCCCCHHHHHHHHHHHHHcCC
Confidence 333332 11 34555 777888888888877765433
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-05 Score=69.68 Aligned_cols=105 Identities=20% Similarity=0.146 Sum_probs=82.1
Q ss_pred ccCCceEEEEccCCCCcchhhHH---HHHh--CCeEeeecCCCCCCeEE--------cCccccccHHHHhhccCCcEEEE
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQ---AIEY--GTKMVGGVTPKKGGTEH--------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~---~~~~--g~~IVagVdP~~~G~ei--------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+...+|++|.|- |.+|+...|. +.++ ++++|+.+ +.+.|++. .|+||+.|++++++. ++|++|+
T Consensus 19 ~~~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~lvi 95 (350)
T 2g0t_A 19 YQPGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLII 95 (350)
T ss_dssp SCTTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEEE
T ss_pred hCcCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCEEEE
Confidence 345688999998 9999988884 4776 69999999 88877543 369999999999854 6999999
Q ss_pred ee------ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 122 YV------PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 122 fV------Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+ =++...+.+.+|+++|...|-+ -+....|..+|.++|++
T Consensus 96 g~a~~gg~l~~~~~~~I~~Al~~G~nVvsg--lh~~l~~~pel~~~A~~ 142 (350)
T 2g0t_A 96 GVSNPGGYLEEQIATLVKKALSLGMDVISG--LHFKISQQTEFLKIAHE 142 (350)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHTTCEEEEC--CCC--CCHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHcCCcEEeC--ChhhhhCCHHHHHHHHH
Confidence 86 2347789999999999987765 34457777778888875
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=68.42 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC----CeEeeecCCCCC--C-eEE--cCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKG--G-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g----~~IVagVdP~~~--G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||.|+|+ |+||..+...+.+.| .+|. .+|+... . +.+ .|+.+..+..++.+ ++|++|++||+..+.
T Consensus 23 mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~--~aDvVilav~~~~~~ 98 (322)
T 2izz_A 23 MSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALRKMGVKLTPHNKETVQ--HSDVLFLAVKPHIIP 98 (322)
T ss_dssp CCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHHHHTCEEESCHHHHHH--HCSEEEECSCGGGHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHHHcCCEEeCChHHHhc--cCCEEEEEeCHHHHH
Confidence 57999999 999999999998888 5654 5565542 1 111 37778888888877 799999999999999
Q ss_pred HHHHHHHHc-C-CCEEEEeCCCCCHHHHHHH
Q 030220 130 AAIMEAMEA-E-LDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 130 ~~~~eaie~-G-Ik~IV~iTtG~~~ed~~~l 158 (181)
++++++... . =+.||.++.|++.+++.++
T Consensus 99 ~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~ 129 (322)
T 2izz_A 99 FILDEIGADIEDRHIVVSCAAGVTISSIEKK 129 (322)
T ss_dssp HHHHHHGGGCCTTCEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEEeCCCCCHHHHHHH
Confidence 999876543 1 2357776789998765544
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=9.5e-06 Score=70.72 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCC--C----e---EE-------------cCccccccHHHHhhccC
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG--G----T---EH-------------LGLPVFNSVAEAKAETK 115 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~--G----~---ei-------------~GvPVy~sl~e~~~~~~ 115 (181)
.||.|+|+ |.+|+.+++.+.+ .++++++..+.... . . .+ .+++|..+.+++.. +
T Consensus 2 ikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~--~ 78 (337)
T 1cf2_P 2 KAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--E 78 (337)
T ss_dssp EEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--T
T ss_pred eEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc--C
Confidence 58999999 9999999999888 58999886554311 0 0 01 13344445666665 7
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 116 ANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 116 ~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+|++++++|+....+.+..++++|++ |+.
T Consensus 79 vDvV~~atp~~~~~~~a~~~l~aG~~-VId 107 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMYKEKGIK-AIF 107 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCC-EEE
T ss_pred CCEEEECCCchhhHHHHHHHHHcCCE-EEE
Confidence 99999999999999999999999988 444
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=69.38 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=71.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC----eEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~----~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||.|+|+ |+||+.+.+.+.+.|+ ++. ..|++... +. -.|+.++.+.+|+.+ ++|++++++|++...+
T Consensus 3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVilav~~~~~~~ 78 (247)
T 3gt0_A 3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQII-CSDLNTANLKNASEKYGLTTTTDNNEVAK--NADILILSIKPDLYAS 78 (247)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCHHHHHHHHHHHCCEECSCHHHHHH--HCSEEEECSCTTTHHH
T ss_pred CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCHHHHHHHHHHhCCEEeCChHHHHH--hCCEEEEEeCHHHHHH
Confidence 57999998 9999999999999887 654 55654311 11 137888999999887 7999999999999999
Q ss_pred HHHHHHHcC--CCEEEEeCCCCCHHHHHHHH
Q 030220 131 AIMEAMEAE--LDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 131 ~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~ 159 (181)
++++....- =+.|+.++.|++.+.+.+..
T Consensus 79 v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~ 109 (247)
T 3gt0_A 79 IINEIKEIIKNDAIIVTIAAGKSIESTENAF 109 (247)
T ss_dssp HC---CCSSCTTCEEEECSCCSCHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEEecCCCCHHHHHHHh
Confidence 987765431 12566578999988766543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-06 Score=72.58 Aligned_cols=106 Identities=15% Similarity=0.033 Sum_probs=77.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCCCCeEEc----CccccccHHHHhhcc--------------
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHL----GLPVFNSVAEAKAET-------------- 114 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~~G~ei~----GvPVy~sl~e~~~~~-------------- 114 (181)
++.||.|+|+ |.+|+.+++.+.+. ++++++..|... ..+. |++.|++.++.++..
T Consensus 3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 3478999999 99999999988874 367888877543 2231 778778777776532
Q ss_pred ----CCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHhhhhch
Q 030220 115 ----KANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG---IPQHDMVINFTRVNILLV 167 (181)
Q Consensus 115 ----~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG---~~~ed~~~l~~~ak~ipv 167 (181)
.+|++|+++|.....+....|+++|++.|.. -++ .+.++..+|. +|++-.+
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVta-Nkkpla~~~~~~~eL~-~A~~~gv 137 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATP-NKKAFSSDLATWKALF-SNKPTNG 137 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECC-CCGGGSSCHHHHHHHT-CCCTTCC
T ss_pred hhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEec-CcccccCCHHHHHHHH-HHHHcCC
Confidence 2389999999886666668999999987763 344 3447778888 8876543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.97 E-value=8.3e-06 Score=69.12 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=74.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~ 133 (181)
.+||.|+|+ |+||+.+.+.+.+.|++++ +.|+.... +.. .|+..+.+++|+.+ ++|++++++|... +.+++.
T Consensus 9 ~~~IgiIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 9 EFDVSVIGL-GAMGTIMAQVLLKQGKRVA-IWNRSPGKAAALVAAGAHLCESVKAALS--ASPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp SCSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTCEECSSHHHHHH--HSSEEEECCSSHHHHHHHHT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEeCCHHHHHHHhc
Confidence 467999999 9999999999999999876 44544311 011 37778889999988 7999999999665 666654
Q ss_pred --HHHHc-CCCEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 134 --EAMEA-ELDLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 134 --eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.+... .=+.||. ++..+..+..++.+..++..+.|
T Consensus 85 ~~~l~~~~~g~ivid-~st~~~~~~~~l~~~~~~~g~~~ 122 (306)
T 3l6d_A 85 MPGVARALAHRTIVD-YTTNAQDEGLALQGLVNQAGGHY 122 (306)
T ss_dssp STTHHHHTTTCEEEE-CCCCCTTHHHHHHHHHHHTTCEE
T ss_pred ccchhhccCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeE
Confidence 22211 2234565 56666777778877776554433
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=69.28 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=75.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhcc-CCcEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAET-KANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~-~~DVaIdfVPp~~a~~~~~ 133 (181)
.+||.|+|. |+||+.+.+.+.+.|++++ +.|+.... +.+ .|+.++.+++|+.+.. ++|+++++||+..+.++++
T Consensus 22 ~mkIgiIGl-G~mG~~~A~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~ 99 (358)
T 4e21_A 22 SMQIGMIGL-GRMGADMVRRLRKGGHECV-VYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQ 99 (358)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHH
T ss_pred CCEEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Confidence 478999998 9999999999999999866 45554311 011 3778888999988732 4599999999998888887
Q ss_pred HHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 134 EAMEAE-L-DLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 134 eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+...- - ..||. .+..+..+..++.+..++..
T Consensus 100 ~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~~g 133 (358)
T 4e21_A 100 RMTPLLAANDIVID-GGNSHYQDDIRRADQMRAQG 133 (358)
T ss_dssp HHGGGCCTTCEEEE-CSSCCHHHHHHHHHHHHTTT
T ss_pred HHHhhCCCCCEEEe-CCCCChHHHHHHHHHHHHCC
Confidence 765541 1 24555 55566666666666665433
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-05 Score=64.31 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=67.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~- 133 (181)
+||.|+|+ |+||+.+.+.+.+.|++++ .+| +.+.. .+ .|+.++.+++++.+ ++|++++++|... +.+++.
T Consensus 4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~~ 78 (295)
T 1yb4_A 4 MKLGFIGL-GIMGSPMAINLARAGHQLH-VTTIGPVAD-ELLSLGAVNVETARQVTE--FADIIFIMVPDTPQVEDVLFG 78 (295)
T ss_dssp CEEEECCC-STTHHHHHHHHHHTTCEEE-ECCSSCCCH-HHHTTTCBCCSSHHHHHH--TCSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCEEE-EEcCHHHHH-HHHHcCCcccCCHHHHHh--cCCEEEEECCCHHHHHHHHhC
Confidence 68999998 9999999999988898865 344 33321 11 37788889999887 7999999998776 455554
Q ss_pred --HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 --EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 --eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+..+. .- +.|+..++| +..+..+|.+..++
T Consensus 79 ~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~ 112 (295)
T 1yb4_A 79 EHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNE 112 (295)
T ss_dssp TTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHT
T ss_pred chhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHH
Confidence 22221 11 235554555 55556666666554
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-06 Score=73.91 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeE-eeecCCCCCC-----eEEcCccccc--cHHHHhhccCCcEEEEeeChH
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGG-----TEHLGLPVFN--SVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~I-VagVdP~~~G-----~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~ 126 (181)
-.+++||+|+|+ |.+|+.+++.+.+ +.++ ++++++.... .....+-+.+ ++.++++ ++|++|.++||.
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~p~~ 88 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGALPGF 88 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECCCGG
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEecCCc
Confidence 345688999999 9999999988766 3443 4455432111 0111233333 4677776 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
....+++.|+++|++-+ - +++ ..+++.+|.+.|++-.+.
T Consensus 89 ~~~~v~~~~~~~g~~yv-D-~s~-~~~~~~~l~~~a~~~g~~ 127 (365)
T 3abi_A 89 LGFKSIKAAIKSKVDMV-D-VSF-MPENPLELRDEAEKAQVT 127 (365)
T ss_dssp GHHHHHHHHHHHTCEEE-E-CCC-CSSCGGGGHHHHHHTTCE
T ss_pred ccchHHHHHHhcCcceE-e-eec-cchhhhhhhhhhccCCce
Confidence 99999999999999754 3 333 345667778888765443
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.5e-06 Score=70.04 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHH--hCCeEeeecCCCCC--CeE---EcCccc-cccHHHHhhc---cCCcEEEEeeCh
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKG--GTE---HLGLPV-FNSVAEAKAE---TKANASVIYVPP 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVdP~~~--G~e---i~GvPV-y~sl~e~~~~---~~~DVaIdfVPp 125 (181)
+..||.|+|+ |.+|+.+.+.+.+ .+.++++.+|+... +.+ ..|++. +++++++++. .++|++++.+|+
T Consensus 3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA 81 (312)
T ss_dssp SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence 3478999996 9999999998865 37888877665432 222 246664 5678888664 468999999999
Q ss_pred HHHHHHHHHHHHc--CCCEEE
Q 030220 126 PFAAAAIMEAMEA--ELDLVV 144 (181)
Q Consensus 126 ~~a~~~~~eaie~--GIk~IV 144 (181)
+...+.+..|+++ |.+.+.
T Consensus 82 ~~h~~~a~~al~a~~Gk~Vi~ 102 (312)
T 1nvm_B 82 SAHVQNEALLRQAKPGIRLID 102 (312)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999 988665
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.2e-06 Score=70.97 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=66.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc----------CccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL----------GLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~----------GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
++||+|+|++|..|+.+.+.+.+. ++++++..+....|.++. .+.+. ++++ .+ ++|+++.++|..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~-~~~~-~~--~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-PPEK-LE--PADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCB-CGGG-CC--CCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccccc-chhH-hc--CCCEEEEcCCcH
Confidence 478999999999999999988874 789998777554443321 12222 2333 23 799999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
...+.+..++++|++.|.. +.-+.
T Consensus 80 ~s~~~a~~~~~aG~~VId~-Sa~~r 103 (345)
T 2ozp_A 80 VFAREFDRYSALAPVLVDL-SADFR 103 (345)
T ss_dssp HHHHTHHHHHTTCSEEEEC-SSTTS
T ss_pred HHHHHHHHHHHCCCEEEEc-Ccccc
Confidence 9999999999999985544 65443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=73.26 Aligned_cols=96 Identities=8% Similarity=0.117 Sum_probs=73.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh------CCeEeeecCCCCCCe---EEcCcccc----ccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKGGT---EHLGLPVF----NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~------g~~IVagVdP~~~G~---ei~GvPVy----~sl~e~~~~~~~DVaIdfVPp 125 (181)
++|.|+|+ |+||..+.+.+.+. |++++.+.+....-. +-.|+.+. .+++|+.+ +.|++++.+|+
T Consensus 55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~--~ADVVILaVP~ 131 (525)
T 3fr7_A 55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVS--GSDLVLLLISD 131 (525)
T ss_dssp SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHH--HCSEEEECSCH
T ss_pred CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHh--cCCEEEECCCh
Confidence 67999998 99999999999998 999876666432111 12577763 58899988 79999999999
Q ss_pred HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHH
Q 030220 126 PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 126 ~~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~ 157 (181)
....+++++...+ .-..++.++.||+.+.+.+
T Consensus 132 ~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~ 164 (525)
T 3fr7_A 132 AAQADNYEKIFSHMKPNSILGLSHGFLLGHLQS 164 (525)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhh
Confidence 9888888775543 2234678899999887764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=64.84 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=69.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCcc--ccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLP--VFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvP--Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+||.|+|+ |+||+.+.+.+.+.|.+++ .+|+.... +.+ .|++ ++.+++++ + ++|++++++|+....++++
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~D~vi~av~~~~~~~~~~ 75 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQLILPTLE 75 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGG-T--TCSEEEECSCHHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHhCCCCccccCCHHHh-C--CCCEEEEECCHHHHHHHHH
Confidence 37999998 9999999999998888866 45654311 011 2443 56678887 5 8999999999999999988
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHH
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ 161 (181)
++... .- ..|+. +.+++...+..+.+.
T Consensus 76 ~l~~~~~~~~~vv~-~~~~~~~~~~~~~~~ 104 (279)
T 2f1k_A 76 KLIPHLSPTAIVTD-VASVKTAIAEPASQL 104 (279)
T ss_dssp HHGGGSCTTCEEEE-CCSCCHHHHHHHHHH
T ss_pred HHHhhCCCCCEEEE-CCCCcHHHHHHHHHH
Confidence 76543 22 24554 677888777666654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.87 E-value=3.5e-05 Score=63.51 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=69.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCe-EE--cCcc--ccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGT-EH--LGLP--VFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~-ei--~GvP--Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++|.|+|+ |+||+.+.+.+.+.|. +|+ ++|+..... .. .|+. ++.+++++.+. ++|++++++|+....++
T Consensus 2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~aDvVilavp~~~~~~v 78 (281)
T 2g5c_A 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPVRTFREI 78 (281)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHTTSCSEEESCGGGGGGT-CCSEEEECSCHHHHHHH
T ss_pred cEEEEEec-CHHHHHHHHHHHhcCCCcEEE-EEeCCHHHHHHHHHCCCcccccCCHHHHhcC-CCCEEEEcCCHHHHHHH
Confidence 57999998 9999999999998887 655 466543110 01 2442 35577666542 68999999999999998
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
++++... +-..+|....+.+......+.+...
T Consensus 79 ~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~ 111 (281)
T 2g5c_A 79 AKKLSYILSEDATVTDQGSVKGKLVYDLENILG 111 (281)
T ss_dssp HHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred HHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc
Confidence 8876543 2233444466776666666666554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.7e-05 Score=65.70 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=70.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCCC-eEE--cCc--cccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TEH--LGL--PVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~G-~ei--~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.+||.|+|+ |+||+.+.+.+.+. +.+++ ++|+.... +.. .|+ ..+.+++++.+ ++|++++++|+....+
T Consensus 6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~ 81 (290)
T 3b1f_A 6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSDRSRDIALERGIVDEATADFKVFAA--LADVIILAVPIKKTID 81 (290)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSHHHHHHHHHTTSCSEEESCTTTTGG--GCSEEEECSCHHHHHH
T ss_pred cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCHHHHHHHHHcCCcccccCCHHHhhc--CCCEEEEcCCHHHHHH
Confidence 368999998 99999999988886 56655 55654311 011 344 35667777776 7999999999999999
Q ss_pred HHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 131 AIMEAMEA--ELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 131 ~~~eaie~--GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+++++... +-..+|...++.+......+.+...
T Consensus 82 v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~ 116 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLK 116 (290)
T ss_dssp HHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcc
Confidence 99887654 2234555467777665666666544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.5e-05 Score=63.87 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=71.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHH-H-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAA-I-ME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~-~-~e 134 (181)
.||.++|. |+||.-..+.+.+.|+++++ ..+|.+... .-.|..+.++++|+.+ ++|+++.++|+..+.+. + .+
T Consensus 6 ~kIgfIGL-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~~dvvi~~l~~~~~~~~v~~~~ 82 (297)
T 4gbj_A 6 EKIAFLGL-GNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAIT--PGGIVFSVLADDAAVEELFSME 82 (297)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCC--TTCEEEECCSSHHHHHHHSCHH
T ss_pred CcEEEEec-HHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHh--cCCceeeeccchhhHHHHHHHH
Confidence 37999999 99999999999999999663 455554321 0147888899999987 89999999998765443 2 22
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.+.. +-..+++-.+-.+.++..++.+.+++..+
T Consensus 83 ~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~ 116 (297)
T 4gbj_A 83 LVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGA 116 (297)
T ss_dssp HHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCC
Confidence 3322 22224333666778888888888766544
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-05 Score=63.87 Aligned_cols=100 Identities=10% Similarity=0.144 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAI-- 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~-- 132 (181)
+||.|+|+ |.||+.+.+.+.+.|.++. .+|+.... +.+ .|+.++.+++++.+ ++|++++++| +..+.+++
T Consensus 6 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~~~~~~ 81 (299)
T 1vpd_A 6 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALG 81 (299)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred ceEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHhC
Confidence 58999998 9999999999988898864 55654311 111 37888889999887 6999999999 55666666
Q ss_pred -HHHH---HcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 -MEAM---EAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 -~eai---e~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++.. ..| +.|+..++|.+ .+..+|.+..++
T Consensus 82 ~~~l~~~l~~~-~~vv~~s~~~~-~~~~~l~~~~~~ 115 (299)
T 1vpd_A 82 ENGIIEGAKPG-TVLIDMSSIAP-LASREISDALKA 115 (299)
T ss_dssp TTCHHHHCCTT-CEEEECSCCCH-HHHHHHHHHHHT
T ss_pred cchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHHHH
Confidence 3332 233 35666566654 444555555543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.83 E-value=7e-05 Score=62.07 Aligned_cols=100 Identities=10% Similarity=0.140 Sum_probs=67.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
.+||.|+|+ |+||+.+.+.+.+.|++++ .+|+.... ..+ .|+.++++++++.+ ++|++++++|.. ...+++.
T Consensus 4 ~~~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~ 79 (301)
T 3cky_A 4 SIKIGFIGL-GAMGKPMAINLLKEGVTVY-AFDLMEANVAAVVAQGAQACENNQKVAA--ASDIIFTSLPNAGIVETVMN 79 (301)
T ss_dssp CCEEEEECC-CTTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHc
Confidence 468999998 9999999999988898866 55654211 011 26788889999887 699999999754 4556653
Q ss_pred ---HHH---HcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 134 ---EAM---EAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 134 ---eai---e~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+.. ..| +.|+..++|.+ .+..+|.+..+
T Consensus 80 ~~~~l~~~l~~~-~~vv~~~~~~~-~~~~~l~~~~~ 113 (301)
T 3cky_A 80 GPGGVLSACKAG-TVIVDMSSVSP-SSTLKMAKVAA 113 (301)
T ss_dssp STTCHHHHSCTT-CEEEECCCCCH-HHHHHHHHHHH
T ss_pred CcchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHHH
Confidence 332 223 35666677764 34444555443
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=69.15 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCeEE----------------cCccccc-cHHHHhhccCCc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH----------------LGLPVFN-SVAEAKAETKAN 117 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~ei----------------~GvPVy~-sl~e~~~~~~~D 117 (181)
++.||.|+|++|..|+.+.+.+.+. ++++++..+ ....|+.+ ..+++.+ +.+++ + ++|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~vD 79 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K--DVD 79 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T--TCS
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c--CCC
Confidence 3578999999999999999988874 788887662 32233222 1122222 23332 3 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
++++++|.....+.+..++++|++.|-. +.-|
T Consensus 80 vVf~atp~~~s~~~a~~~~~aG~~VId~-s~~~ 111 (350)
T 2ep5_A 80 VVLSALPNELAESIELELVKNGKIVVSN-ASPF 111 (350)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEC-SSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEC-Cccc
Confidence 9999999999999999999999995544 5443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=64.85 Aligned_cols=99 Identities=11% Similarity=-0.016 Sum_probs=64.7
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------------EcCcc
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------------HLGLP 102 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------------i~GvP 102 (181)
..+.+||.|+|+ |.||..+...+.+.|++|+ .+|+.....+ ...+.
T Consensus 12 ~~~~~~I~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 12 KIIVKHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 345578999999 9999999999988899876 4554321000 01244
Q ss_pred ccccHHHHhhccCCcEEEEeeChHH--HHHHHHHHHHc-CCC-EEEEeCCCCCHHHHHH
Q 030220 103 VFNSVAEAKAETKANASVIYVPPPF--AAAAIMEAMEA-ELD-LVVCITEGIPQHDMVI 157 (181)
Q Consensus 103 Vy~sl~e~~~~~~~DVaIdfVPp~~--a~~~~~eaie~-GIk-~IV~iTtG~~~ed~~~ 157 (181)
+..++++.++ ++|++|.++|... -.+++.+..+. .-. .|+..|.|++..++.+
T Consensus 90 ~~~~~~~~~~--~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~ 146 (302)
T 1f0y_A 90 TSTDAASVVH--STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN 146 (302)
T ss_dssp EESCHHHHTT--SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT
T ss_pred EecCHHHhhc--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH
Confidence 5667887776 8999999999864 23444443322 112 3444578999876543
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=64.41 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=69.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeC-hHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVP-PPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-p~~a~~~~~ 133 (181)
.+||.|+|+ |+||+.+.+.+.+.|.++. .+|+.... +.+ .|+.++.+.+++.+ ++|++++++| +..+.+++.
T Consensus 30 ~~~I~iIG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~DvVi~av~~~~~~~~v~~ 105 (316)
T 2uyy_A 30 DKKIGFLGL-GLMGSGIVSNLLKMGHTVT-VWNRTAEKCDLFIQEGARLGRTPAEVVS--TCDITFACVSDPKAAKDLVL 105 (316)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSGGGGHHHHHTTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHcCCEEcCCHHHHHh--cCCEEEEeCCCHHHHHHHHc
Confidence 367999998 9999999999988888865 45544311 111 36778888888877 7999999999 777777766
Q ss_pred HHH---Hc-CC-CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 134 EAM---EA-EL-DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 134 eai---e~-GI-k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
... +. .- +.|+. .++.+.....+|.+...
T Consensus 106 ~~~~~~~~l~~~~~vv~-~s~~~~~~~~~l~~~~~ 139 (316)
T 2uyy_A 106 GPSGVLQGIRPGKCYVD-MSTVDADTVTELAQVIV 139 (316)
T ss_dssp STTCGGGGCCTTCEEEE-CSCCCHHHHHHHHHHHH
T ss_pred CchhHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH
Confidence 421 11 11 34554 44566666666666654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.79 E-value=8.6e-05 Score=62.56 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=67.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
.+|.|+|+.|.||..+.+.+.+.|.++. .+|+... .+.+++.+ ++|++|++||+....+++++....
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~~~~----------~~~~~~~~--~aDvVilavp~~~~~~vl~~l~~~ 88 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPIS-ILDREDW----------AVAESILA--NADVVIVSVPINLTLETIERLKPY 88 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTCG----------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEE-EEECCcc----------cCHHHHhc--CCCEEEEeCCHHHHHHHHHHHHhh
Confidence 5799999339999999999999898866 4565431 25667766 799999999999999999887543
Q ss_pred -CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 139 -ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 139 -GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.-..+|...++++...+..+.+.
T Consensus 89 l~~~~iv~~~~svk~~~~~~~~~~ 112 (298)
T 2pv7_A 89 LTENMLLADLTSVKREPLAKMLEV 112 (298)
T ss_dssp CCTTSEEEECCSCCHHHHHHHHHH
T ss_pred cCCCcEEEECCCCCcHHHHHHHHh
Confidence 22335555788888777666654
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.8e-05 Score=67.29 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=82.3
Q ss_pred ccCCceEEEEccCCCCcchhhHHH---HHh-CCeEeeecCCCCCCeEE-------cCccccccHHHHhhccCCcEEEEee
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQA---IEY-GTKMVGGVTPKKGGTEH-------LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~---~~~-g~~IVagVdP~~~G~ei-------~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+...++++|.+- |.+|+...|.. .+| ++++||.+|..+.|++. .|+|++.|++++++ .++|+.|+.+
T Consensus 4 ~~~~~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~~~gipi~~~l~~al~-~~~d~lvig~ 81 (349)
T 2obn_A 4 LPLNQRVAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALE-YKPQVLVIGI 81 (349)
T ss_dssp ---CCCEEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCCCSCCCEESSHHHHGG-GCCSEEEECC
T ss_pred CCCCCcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCCcCCCCccCCHHHHHh-CCCCEEEEEe
Confidence 345677888887 99999888765 776 89999999988878543 36999999999984 5899999998
Q ss_pred C------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 124 P------PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 124 P------p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
. |+...+.+.+|+++|...|-+ -+.+..|..+|.++|++
T Consensus 82 a~~gG~l~~~~~~~i~~Al~~G~~Vvsg--lh~~l~~~pel~~~A~~ 126 (349)
T 2obn_A 82 APKGGGIPDDYWIELKTALQAGMSLVNG--LHTPLANIPDLNALLQP 126 (349)
T ss_dssp CCCCC-SCGGGHHHHHHHHHTTCEEEEC--SSSCCTTCHHHHHHCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCcEEeC--ccchhhCCHHHHHHHHc
Confidence 2 247779999999999987655 44565555668888876
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.6e-05 Score=66.16 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=67.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.|+|++|+||+.+.+.+.+.|++|+ .+|+.... ..+ .|+.+. +..++.+ ++|++|+++|+....++++++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~aDvVi~av~~~~~~~v~~~l 87 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIAPEGRDRLQGMGIPLT-DGDGWID--EADVVVLALPDNIIEKVAEDI 87 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCSHHHHHHHHHTTCCCC-CSSGGGG--TCSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHhcCCCcC-CHHHHhc--CCCEEEEcCCchHHHHHHHHH
Confidence 6899999999999999999999898876 56654311 011 355443 5666666 799999999999998888876
Q ss_pred HHc-C-CCEEEEeCCCCCHHHHH
Q 030220 136 MEA-E-LDLVVCITEGIPQHDMV 156 (181)
Q Consensus 136 ie~-G-Ik~IV~iTtG~~~ed~~ 156 (181)
... . =+.|+..++|.+.+.+.
T Consensus 88 ~~~l~~~~ivv~~s~~~~~~~l~ 110 (286)
T 3c24_A 88 VPRVRPGTIVLILDAAAPYAGVM 110 (286)
T ss_dssp GGGSCTTCEEEESCSHHHHHTCS
T ss_pred HHhCCCCCEEEECCCCchhHHHH
Confidence 543 1 23566568888655443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5.2e-05 Score=62.23 Aligned_cols=99 Identities=10% Similarity=-0.107 Sum_probs=65.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~e 134 (181)
+||.|+|+ |+||+.+.+.+.+ |.+++ .+|+.... +.+ .|+.+++ ++++.+ ++|++++++|... +.+++++
T Consensus 2 ~~i~iiG~-G~~G~~~a~~l~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~D~vi~~v~~~~~~~~v~~~ 75 (289)
T 2cvz_A 2 EKVAFIGL-GAMGYPMAGHLAR-RFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVA--EARVIFTCLPTTREVYEVAEA 75 (289)
T ss_dssp CCEEEECC-STTHHHHHHHHHT-TSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGG--GCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEcc-cHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHCCCcccC-HHHHHh--CCCEEEEeCCChHHHHHHHHH
Confidence 57999999 9999999999998 99865 55654311 111 2556666 667666 7999999999775 6666655
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+.+. .-..+|+........+..+|.+..+
T Consensus 76 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~ 105 (289)
T 2cvz_A 76 LYPYLREGTYWVDATSGEPEASRRLAERLR 105 (289)
T ss_dssp HTTTCCTTEEEEECSCCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 5432 2223333344556666666666654
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.74 E-value=7.6e-05 Score=58.57 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE-cCccccc-------cHHHHhhccCCcEEEEeeChH-
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH-LGLPVFN-------SVAEAKAETKANASVIYVPPP- 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei-~GvPVy~-------sl~e~~~~~~~DVaIdfVPp~- 126 (181)
++++|+|.|++|..|+.+++.+.+.|.+|++... +.... .. .++.++. +++++++ ++|++|.+..+.
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~ 79 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK-IENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGW 79 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCC-CCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC--
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccch-hccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCC
Confidence 3578999999999999999999999999886432 22111 11 2232222 4666666 799999887553
Q ss_pred -----------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 -----------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 -----------~a~~~~~eaie~GIk~IV~iTt 148 (181)
.+..+++.|.++|++.+|.+++
T Consensus 80 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 80 NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp ----CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5677888888999988777665
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.6e-05 Score=66.64 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=75.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhc--cCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAE--TKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~--~~~DVaIdfVPp~~a~~~~ 132 (181)
..+|.|+|+ |.||....+.+.+.|++|+ +.|+.....+ -.|+.++.+++++.++ .++|++++.+|+..+.+++
T Consensus 8 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl 85 (341)
T 3ktd_A 8 SRPVCILGL-GLIGGSLLRDLHAANHSVF-GYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLL 85 (341)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHH
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHH
Confidence 357999998 9999999999999998876 5565432111 1467677888887653 2589999999999999988
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++.....-..+|.-..++...-...+.+..
T Consensus 86 ~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~ 115 (341)
T 3ktd_A 86 DAVHTHAPNNGFTDVVSVKTAVYDAVKARN 115 (341)
T ss_dssp HHHHHHCTTCCEEECCSCSHHHHHHHHHTT
T ss_pred HHHHccCCCCEEEEcCCCChHHHHHHHHhC
Confidence 877665433455447778877666666553
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=66.90 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=72.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccc-cccHHHHhhccCCcEEEEeeChH-HHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPV-FNSVAEAKAETKANASVIYVPPP-FAAAA 131 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPV-y~sl~e~~~~~~~DVaIdfVPp~-~a~~~ 131 (181)
.++||.|+|+ |+||+.+.+.+.+.|++++ ..|+.... +.+ .|... ..+++|+.+ ++|++++++|.. .+.++
T Consensus 6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~e~~~--~aDvvi~~vp~~~~~~~v 81 (303)
T 3g0o_A 6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTW-GADLNPQACANLLAEGACGAAASAREFAG--VVDALVILVVNAAQVRQV 81 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCSEEESSSTTTTT--TCSEEEECCSSHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccCCHHHHHh--cCCEEEEECCCHHHHHHH
Confidence 3468999999 9999999999999999866 44544311 011 35666 778888887 799999999986 45555
Q ss_pred H---HHHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 132 I---MEAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 132 ~---~eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+ +...+. .- +.|+. ++..+.....++.+..++..+
T Consensus 82 ~~~~~~l~~~l~~g~ivv~-~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 82 LFGEDGVAHLMKPGSAVMV-SSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp HC--CCCGGGSCTTCEEEE-CSCCCHHHHHHHHHHHHTTTC
T ss_pred HhChhhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCC
Confidence 4 333332 11 34555 666888888888777665443
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.71 E-value=7.6e-05 Score=63.74 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=74.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCC--C------eEE--cCccccc-cHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG--G------TEH--LGLPVFN-SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~--G------~ei--~GvPVy~-sl~e~~~~~~~DVaIdfVPp 125 (181)
++||.|+|+ |.||+...+.+.+.| ++++ +.|+... . ... .|+ .. +++|+.+ ++|+++++||+
T Consensus 24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~--~aDvVi~avp~ 97 (317)
T 4ezb_A 24 MTTIAFIGF-GEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALRARAAELGV--EPLDDVAGIA--CADVVLSLVVG 97 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGG--GCSEEEECCCG
T ss_pred CCeEEEECc-cHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHh--cCCEEEEecCC
Confidence 368999998 999999999999999 8866 4454320 0 001 355 66 8888877 79999999999
Q ss_pred HHHHHHHHHHHHcC-C-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 126 PFAAAAIMEAMEAE-L-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 126 ~~a~~~~~eaie~G-I-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
....+.++...+.- - ..||. +++.+.....++.+..++.
T Consensus 98 ~~~~~~~~~i~~~l~~~~ivv~-~st~~p~~~~~~~~~l~~~ 138 (317)
T 4ezb_A 98 AATKAVAASAAPHLSDEAVFID-LNSVGPDTKALAAGAIATG 138 (317)
T ss_dssp GGHHHHHHHHGGGCCTTCEEEE-CCSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHHHc
Confidence 99999887666542 2 23454 6788888888888877654
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1e-05 Score=65.89 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+||.|+|+ |+||+.+...+.+.| .++. .+|+.... +.+ .|+.++.+.+++. ++|++++++|+....++++
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~---~~D~vi~~v~~~~~~~v~~ 75 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAACK 75 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCeEE-EECCCHHHHHHHHHhcCCEEeCCHHHHh---cCCEEEEEeCchhHHHHHH
Confidence 47999998 999999999998888 7754 45554211 111 3777777776654 6899999999988888877
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHH
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~ 157 (181)
++.. .=+.|+.++.|++.+++.+
T Consensus 76 ~l~~-~~~ivv~~~~g~~~~~l~~ 98 (263)
T 1yqg_A 76 NIRT-NGALVLSVAAGLSVGTLSR 98 (263)
T ss_dssp TCCC-TTCEEEECCTTCCHHHHHH
T ss_pred Hhcc-CCCEEEEecCCCCHHHHHH
Confidence 5543 3234566568999854443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1e-05 Score=69.43 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=66.7
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE----------------cCccccccHHHHhhccCCcEEEEe
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei----------------~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
||.|+|+ |.||......+.+.|.+|. .+|+...- +.+ .++.+.++++++.+ ++|++|++
T Consensus 17 kI~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDvVila 92 (366)
T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILFV 92 (366)
T ss_dssp EEEEECC-SHHHHHHHHHHTTTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSSEEEC
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc--CCCEEEEC
Confidence 8999999 9999999999988887765 34433100 000 13455568888776 79999999
Q ss_pred eChHHHHHHHHH----HH---Hc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 123 VPPPFAAAAIME----AM---EA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 123 VPp~~a~~~~~e----ai---e~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
||+..+.+++++ +. .. |. .|+.++.|++.+....+.+.
T Consensus 93 v~~~~~~~v~~~~~~gl~~~l~~~~~-ivv~~~~gi~~~~~~~~~~~ 138 (366)
T 1evy_A 93 IPTQFLRGFFEKSGGNLIAYAKEKQV-PVLVCTKGIERSTLKFPAEI 138 (366)
T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHHTC-CEEECCCSCCTTTCCCHHHH
T ss_pred CChHHHHHHHHHhHHHHHHhcCccCC-EEEEECCcCCCccccCHHHH
Confidence 999988888876 43 33 43 45565779887654444443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.3e-05 Score=61.78 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cC-------ccccccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG-------LPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~G-------vPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||+|+|++|.||+.+.+.+.+.|.+++. +|+.... +.+ .| +. +.+++++.+ ++|++++++|+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~D~Vi~~~~~~~ 76 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVV-GSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE--ACDIAVLTIPWEH 76 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEE-EESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH--HCSEEEECSCHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh--cCCEEEEeCChhh
Confidence 37999996699999999999988988664 4443211 011 12 33 457778776 7999999999999
Q ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCH
Q 030220 128 AAAAIMEAMEA-ELDLVVCITEGIPQ 152 (181)
Q Consensus 128 a~~~~~eaie~-GIk~IV~iTtG~~~ 152 (181)
..++++++.+. .=+.++.+++|++.
T Consensus 77 ~~~~~~~l~~~~~~~~vi~~~~g~~~ 102 (212)
T 1jay_A 77 AIDTARDLKNILREKIVVSPLVPVSR 102 (212)
T ss_dssp HHHHHHHTHHHHTTSEEEECCCCEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCc
Confidence 88887765431 23467777898883
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.8e-05 Score=67.42 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=69.3
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--c-----------CccccccHHHHhhccCCcEEE
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-----------GLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~-----------GvPVy~sl~e~~~~~~~DVaI 120 (181)
..-..||.|+|+ |+||......+.+.|.+|. .+|+...- +.+ . ++.+.++.++ .+ ++|+++
T Consensus 11 ~~~~~kI~iIG~-G~mG~ala~~L~~~G~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~--~aDvVi 85 (335)
T 1z82_A 11 HHMEMRFFVLGA-GSWGTVFAQMLHENGEEVI-LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK--KEDILV 85 (335)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC--TTEEEE
T ss_pred cccCCcEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc--CCCEEE
Confidence 334578999999 9999999999999888865 34443110 011 1 2466677777 55 789999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
++||+..+.++++++.. .=+.||.++.|++.++...+.+..
T Consensus 86 l~vk~~~~~~v~~~l~~-~~~~vv~~~nGi~~~~~~~l~~~~ 126 (335)
T 1z82_A 86 IAIPVQYIREHLLRLPV-KPSMVLNLSKGIEIKTGKRVSEIV 126 (335)
T ss_dssp ECSCGGGHHHHHTTCSS-CCSEEEECCCCCCTTTCCCHHHHH
T ss_pred EECCHHHHHHHHHHhCc-CCCEEEEEeCCCCCCccCcHHHHH
Confidence 99999988888876433 224577778899875544444443
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=68.53 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCC-CC------------------C-------eE--Ec--Cccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-KG------------------G-------TE--HL--GLPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~-~~------------------G-------~e--i~--GvPVy~-- 105 (181)
.||.|+|+ |++|+.+++.+.+. ++++|+..||. .. | .. +. .++++.
T Consensus 4 ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 4 IKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred eEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 58999999 99999999998885 89999887751 00 1 00 11 134564
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.++++ .+.++|++++++|.....+.+..++++|+|.+|+
T Consensus 83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVI 123 (337)
T 3e5r_O 83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI 123 (337)
T ss_dssp CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred ChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEE
Confidence 566652 2237999999999999999999999999998877
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.2e-05 Score=66.68 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=63.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeec-CCCCCCeEE---cC-------------ccccc-cHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGTEH---LG-------------LPVFN-SVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagV-dP~~~G~ei---~G-------------vPVy~-sl~e~~~~~~~DVa 119 (181)
+||+|+|++|..|+.+.+.+.+. ++++++.. ++...|+.+ .+ +.+.. +.+++.+ .++|++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-TTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-CCCCEE
Confidence 68999999999999999988875 78888776 454444332 11 11211 3333322 269999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 120 VIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++|.....+.+..++++|++ |+-.+.
T Consensus 88 ~~atp~~~~~~~a~~~~~aG~~-VId~s~ 115 (354)
T 1ys4_A 88 FSALPSDLAKKFEPEFAKEGKL-IFSNAS 115 (354)
T ss_dssp EECCCHHHHHHHHHHHHHTTCE-EEECCS
T ss_pred EECCCchHHHHHHHHHHHCCCE-EEECCc
Confidence 9999999999999999999998 444243
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=68.41 Aligned_cols=91 Identities=9% Similarity=-0.056 Sum_probs=67.9
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc----------------Cccccc-cHHHHhhccCCc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL----------------GLPVFN-SVAEAKAETKAN 117 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~----------------GvPVy~-sl~e~~~~~~~D 117 (181)
.+..||.|+|+||--|+...+.+.+. .++++...+....|+.+. ++++.+ +.++ .+ ++|
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~~--~vD 81 (359)
T 4dpk_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-MD--DVD 81 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-CT--TCC
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-hc--CCC
Confidence 34689999999999999999987775 788887766666564432 122222 1222 23 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+++.++|...+.+.+..++++|++.|-+ +.-|
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDl-Sa~~ 113 (359)
T 4dpk_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISN-SPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEEC-SSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEc-CCCc
Confidence 9999999999999999999999988876 6544
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=68.41 Aligned_cols=91 Identities=9% Similarity=-0.056 Sum_probs=67.9
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc----------------Cccccc-cHHHHhhccCCc
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL----------------GLPVFN-SVAEAKAETKAN 117 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~----------------GvPVy~-sl~e~~~~~~~D 117 (181)
.+..||.|+|+||--|+...+.+.+. .++++...+....|+.+. ++++.+ +.++ .+ ++|
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~~--~vD 81 (359)
T 4dpl_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-MD--DVD 81 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-CT--TCC
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-hc--CCC
Confidence 34689999999999999999987775 788887766666564432 122222 1222 23 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+++.++|...+.+.+..++++|++.|-+ +.-|
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDl-Sa~~ 113 (359)
T 4dpl_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISN-SPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEEC-SSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEc-CCCc
Confidence 9999999999999999999999988876 6544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=67.41 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=70.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE------cCccccccHHHHhhc-cCCcEEEEeeCh-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LGLPVFNSVAEAKAE-TKANASVIYVPP-PFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei------~GvPVy~sl~e~~~~-~~~DVaIdfVPp-~~a~ 129 (181)
++|.|+|+ |.||+.+...+.+.|++|. ..|+.... +.+ .|+.++.+++|+.+. .++|+++++||+ ..+.
T Consensus 6 ~~IgvIG~-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~ 83 (474)
T 2iz1_A 6 ANFGVVGM-AVMGKNLALNVESRGYTVA-IYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD 83 (474)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH
T ss_pred CcEEEEee-HHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHH
Confidence 57999999 9999999999999898864 55654211 011 167788899998772 149999999999 5677
Q ss_pred HHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 130 AAIMEAMEA---ELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 130 ~~~~eaie~---GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++++++... | +.|+..++|. ..+..++.+..++
T Consensus 84 ~vl~~l~~~l~~g-~iiId~s~~~-~~~~~~l~~~l~~ 119 (474)
T 2iz1_A 84 ATIKSLLPLLDIG-DILIDGGNTH-FPDTMRRNAELAD 119 (474)
T ss_dssp HHHHHHGGGCCTT-CEEEECSCCC-HHHHHHHHHHTTT
T ss_pred HHHHHHHhhCCCC-CEEEECCCCC-HHHHHHHHHHHHH
Confidence 777765433 3 3456545565 4455556565544
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.7e-05 Score=65.73 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=57.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~-~eai 136 (181)
++|.|+|+ |+||+.+.+.+...|++|+ +.|+.... ..+...+.+++|+.+ ++|++++.+|.. ....++ ++.+
T Consensus 172 ktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~--~~~~~~~~sl~ell~--~aDvVil~vP~t~~t~~li~~~~l 245 (340)
T 4dgs_A 172 KRIGVLGL-GQIGRALASRAEAFGMSVR-YWNRSTLS--GVDWIAHQSPVDLAR--DSDVLAVCVAASAATQNIVDASLL 245 (340)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCT--TSCCEECSSHHHHHH--TCSEEEECC----------CHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCccc--ccCceecCCHHHHHh--cCCEEEEeCCCCHHHHHHhhHHHH
Confidence 57999999 9999999999999999977 55655422 134555779999998 899999999943 334443 2333
Q ss_pred Hc-C-CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 137 EA-E-LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 137 e~-G-Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+. + =..+|+++.| +.-|...|.++.+.--+
T Consensus 246 ~~mk~gailIN~aRG-~vvde~aL~~aL~~g~i 277 (340)
T 4dgs_A 246 QALGPEGIVVNVARG-NVVDEDALIEALKSGTI 277 (340)
T ss_dssp HHTTTTCEEEECSCC---------------CCS
T ss_pred hcCCCCCEEEECCCC-cccCHHHHHHHHHcCCc
Confidence 32 2 2357776666 55666667766655444
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-05 Score=69.69 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=72.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE------cCccccccHHHHhhc-cCCcEEEEeeCh-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LGLPVFNSVAEAKAE-TKANASVIYVPP-PFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei------~GvPVy~sl~e~~~~-~~~DVaIdfVPp-~~a~ 129 (181)
++|.|+|+ |.||+.....+.+.|++|+ ..|+...- +++ .|+.+..+++|+.+. .++|++++.||+ ..+.
T Consensus 16 ~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 93 (480)
T 2zyd_A 16 QQIGVVGM-AVMGRNLALNIESRGYTVS-IFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTD 93 (480)
T ss_dssp BSEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHH
T ss_pred CeEEEEcc-HHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH
Confidence 57999999 9999999999999899865 45543211 111 167788899998872 139999999999 5788
Q ss_pred HHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 130 AAIMEAMEAE--LDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 130 ~~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
++++++...- =..||..++|.+ .+..++.+..++.+
T Consensus 94 ~vl~~l~~~l~~g~iIId~s~g~~-~~t~~l~~~l~~~g 131 (480)
T 2zyd_A 94 AAIDSLKPYLDKGDIIIDGGNTFF-QDTIRRNRELSAEG 131 (480)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHHCC
Confidence 8887765431 135666566654 44455555554433
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=68.47 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc-------C-----ccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G-----LPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~-------G-----vPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
..||+|+|++|..|+.+.+.+.+. ++++++..++...|.++. | +.+ .+ ++..+ ++|+++.++|
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~--~vDvVf~atp 91 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFS--TVDAVFCCLP 91 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGG--GCSEEEECCC
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhc--CCCEEEEcCC
Confidence 368999999999999999998885 789998877654443221 1 111 11 22223 6999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ 152 (181)
.....+.+..+ ++|++.|-. +.-|..
T Consensus 92 ~~~s~~~a~~~-~aG~~VId~-sa~~R~ 117 (359)
T 1xyg_A 92 HGTTQEIIKEL-PTALKIVDL-SADFRL 117 (359)
T ss_dssp TTTHHHHHHTS-CTTCEEEEC-SSTTTC
T ss_pred chhHHHHHHHH-hCCCEEEEC-CccccC
Confidence 99999999999 999975554 765653
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=8.6e-05 Score=67.80 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=70.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-------cCccccccHHHHhhc-cCCcEEEEeeCh-HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LGLPVFNSVAEAKAE-TKANASVIYVPP-PFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-------~GvPVy~sl~e~~~~-~~~DVaIdfVPp-~~a 128 (181)
.+|.|+|+ |.||+.....+.+.|++|. ..|+...- +++ .|+.+..+++|+.+. .++|++|+.||+ ..+
T Consensus 11 ~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 88 (497)
T 2p4q_A 11 ADFGLIGL-AVMGQNLILNAADHGFTVC-AYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV 88 (497)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred CCEEEEee-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence 57999999 9999999999999999875 44543211 011 367778899998872 139999999999 588
Q ss_pred HHHHHHHHHcCC--CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 129 AAAIMEAMEAEL--DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 129 ~~~~~eaie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.++++++...=- +.||..+++ ...+..++.+..++
T Consensus 89 ~~vl~~l~~~l~~g~iIId~s~~-~~~~~~~l~~~l~~ 125 (497)
T 2p4q_A 89 DALINQIVPLLEKGDIIIDGGNS-HFPDSNRRYEELKK 125 (497)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCC-ChhHHHHHHHHHHH
Confidence 888877654411 245554555 45555556555544
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.58 E-value=4.2e-05 Score=65.98 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM- 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~- 133 (181)
++|.|+|+ |.||+.+.+.+.+.|++++. .++.... .+ -.|+.++ +++++.+ ++|++++++|+....+++.
T Consensus 17 ~~I~IIG~-G~mG~alA~~L~~~G~~V~~-~~~~~~~~~~~a~~~G~~~~-~~~e~~~--~aDvVilavp~~~~~~v~~~ 91 (338)
T 1np3_A 17 KKVAIIGY-GSQGHAHACNLKDSGVDVTV-GLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLYKE 91 (338)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEE-ECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHHHH
T ss_pred CEEEEECc-hHHHHHHHHHHHHCcCEEEE-EECChHHHHHHHHHCCCEEc-cHHHHHh--cCCEEEEeCCcHHHHHHHHH
Confidence 57999998 99999999999998988763 4443311 01 1466666 8888877 7999999999999988887
Q ss_pred HHHHc-CCCEEEEeCCCCCH
Q 030220 134 EAMEA-ELDLVVCITEGIPQ 152 (181)
Q Consensus 134 eaie~-GIk~IV~iTtG~~~ 152 (181)
+.... .-..+|+.+.|++.
T Consensus 92 ~i~~~l~~~~ivi~~~gv~~ 111 (338)
T 1np3_A 92 EIEPNLKKGATLAFAHGFSI 111 (338)
T ss_dssp HTGGGCCTTCEEEESCCHHH
T ss_pred HHHhhCCCCCEEEEcCCchh
Confidence 44332 22234445777654
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.57 E-value=9.8e-05 Score=64.21 Aligned_cols=90 Identities=19% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEE--cC--ccccccHHH-HhhccCCcEEEEeeChHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEH--LG--LPVFNSVAE-AKAETKANASVIYVPPPFA 128 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei--~G--vPVy~sl~e-~~~~~~~DVaIdfVPp~~a 128 (181)
+++||+|+|++|..|+.+.+.+.+. ++++++..++...|+.+ .| +.+. ++++ ..+ ++|+++.++|....
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~-~~~~~~~~--~vDvVf~a~g~~~s 78 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQ-NVEEFDWS--QVHIALFSAGGELS 78 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEE-EGGGCCGG--GCSEEEECSCHHHH
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEe-cCChHHhc--CCCEEEECCCchHH
Confidence 3578999999999999999988875 46788777665544332 22 2332 2221 122 69999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC
Q 030220 129 AAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~ 150 (181)
.+.+..++++|++.|.. +.-+
T Consensus 79 ~~~a~~~~~~G~~vId~-s~~~ 99 (336)
T 2r00_A 79 AKWAPIAAEAGVVVIDN-TSHF 99 (336)
T ss_dssp HHHHHHHHHTTCEEEEC-SSTT
T ss_pred HHHHHHHHHcCCEEEEc-CCcc
Confidence 99999999999976654 5443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=56.89 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=57.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.++|.|+|+ |+||+...+.+.+.|.+++ .+|+... ..+ ++|++++++|+....+++++...
T Consensus 19 ~~~I~iiG~-G~mG~~la~~l~~~g~~V~-~~~~~~~---------------~~~--~aD~vi~av~~~~~~~v~~~l~~ 79 (209)
T 2raf_A 19 GMEITIFGK-GNMGQAIGHNFEIAGHEVT-YYGSKDQ---------------ATT--LGEIVIMAVPYPALAALAKQYAT 79 (209)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTCC---------------CSS--CCSEEEECSCHHHHHHHHHHTHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHH---------------Hhc--cCCEEEEcCCcHHHHHHHHHHHH
Confidence 357999997 9999999999998898866 4565431 233 78999999999998888876543
Q ss_pred c-CCCEEEEeCCCCC
Q 030220 138 A-ELDLVVCITEGIP 151 (181)
Q Consensus 138 ~-GIk~IV~iTtG~~ 151 (181)
. .=+.|+.++.|++
T Consensus 80 ~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 80 QLKGKIVVDITNPLN 94 (209)
T ss_dssp HHTTSEEEECCCCBC
T ss_pred hcCCCEEEEECCCCC
Confidence 2 2245677789987
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=63.01 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=76.7
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
.++||.++|. |+||+-..+++.+.|+++.. ..+|.+... .-.|..+.+|++|+.+ ++|+++.++|...+.+.+..
T Consensus 2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 2 HMKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp -CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHT--TCSEEEECCSCHHHHHHHHH
T ss_pred CcCEEEEeee-hHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHh--cCCceeecCCchHHHHHHHh
Confidence 3678999999 99999999999999999662 333333210 0147888899999988 89999999998766555443
Q ss_pred H---HHcCC---CEEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 135 A---MEAEL---DLVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 135 a---ie~GI---k~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
. +-.+. +.+|. ++=.+.++..++.+.+++--+.|
T Consensus 79 ~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~~G~~~ 118 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAM 118 (300)
T ss_dssp SSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHTTTCEE
T ss_pred chhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 11121 23555 66678888888888887655443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00028 Score=63.72 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=70.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-------cCccccccHHHHhhc-cCCcEEEEeeChH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LGLPVFNSVAEAKAE-TKANASVIYVPPP-FA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-------~GvPVy~sl~e~~~~-~~~DVaIdfVPp~-~a 128 (181)
++|.|+|+ |.||+.+...+.+.|++|. ..|+.... +++ .|+.++.+++++.+. .++|+++++||+. .+
T Consensus 3 m~IgvIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v 80 (482)
T 2pgd_A 3 ADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (482)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CeEEEECh-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHH
Confidence 57999999 9999999999999899865 55543211 011 357778899998742 2699999999995 78
Q ss_pred HHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 129 AAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 129 ~~~~~eaie~-G-Ik~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.++++++... . =+.||..++|.+ .+..++.+..++
T Consensus 81 ~~vl~~l~~~l~~g~iII~~s~~~~-~~~~~l~~~l~~ 117 (482)
T 2pgd_A 81 DNFIEKLVPLLDIGDIIIDGGNSEY-RDTMRRCRDLKD 117 (482)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHHHH
Confidence 8888766543 1 135565556655 444455555443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.1e-05 Score=65.15 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH----H
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI----M 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~----~ 133 (181)
++|.|+|+ |+||+.+.+.+...|++|+ +.|+.... ..|+..+.+++++++ ++|++++.+|... ...++ .
T Consensus 165 ~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~dr~~~~--~~g~~~~~~l~ell~--~aDvVil~vP~~~~t~~li~~~~l 238 (333)
T 3ba1_A 165 KRVGIIGL-GRIGLAVAERAEAFDCPIS-YFSRSKKP--NTNYTYYGSVVELAS--NSDILVVACPLTPETTHIINREVI 238 (333)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSCCT--TCCSEEESCHHHHHH--TCSEEEECSCCCGGGTTCBCHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCchh--ccCceecCCHHHHHh--cCCEEEEecCCChHHHHHhhHHHH
Confidence 46999999 9999999999999999976 45655422 235666789999888 8999999999853 33333 1
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
..++.| ..+++++.|... |...|.++.+.
T Consensus 239 ~~mk~g-ailIn~srG~~v-d~~aL~~aL~~ 267 (333)
T 3ba1_A 239 DALGPK-GVLINIGRGPHV-DEPELVSALVE 267 (333)
T ss_dssp HHHCTT-CEEEECSCGGGB-CHHHHHHHHHH
T ss_pred hcCCCC-CEEEECCCCchh-CHHHHHHHHHc
Confidence 223333 356776676554 33444444433
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=7.2e-05 Score=67.63 Aligned_cols=139 Identities=19% Similarity=0.125 Sum_probs=71.3
Q ss_pred ccccccccCCCccccccccccccccCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe----
Q 030220 22 SSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT---- 96 (181)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~---- 96 (181)
|++++..++++.-+..++-.-.+ .-+.+.. -.+.+||.|+|+ |.||......+.+ |+++++ .+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r-~~~~mkIaVIGl-G~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g 77 (432)
T 3pid_A 3 SSHHHHHHSSGLVPRGSHMASMT--GGQQMGR-GSEFMKITISGT-GYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQK 77 (432)
T ss_dssp -----------------------------------CCCEEEEECC-SHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTT
T ss_pred CccccccccCCcccccchhhhcc--CCccccc-ccCCCEEEEECc-CHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhcc
Confidence 34555566666655554433321 1122222 223468999999 9999988888777 998774 233332110
Q ss_pred E---------------EcCccccccHHHHhhccCCcEEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 97 E---------------HLGLPVFNSVAEAKAETKANASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 97 e---------------i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-----------~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
. ..++....+++++.+ ++|++|++||.. .+.++++...+..-..+|+..+.+
T Consensus 78 ~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~--~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv 155 (432)
T 3pid_A 78 ISPIVDKEIQEYLAEKPLNFRATTDKHDAYR--NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTI 155 (432)
T ss_dssp CCSSCCHHHHHHHHHSCCCEEEESCHHHHHT--TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCC
T ss_pred CCccccccHHHHHhhccCCeEEEcCHHHHHh--CCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 0 013445557777777 799999999986 566666665543223344457778
Q ss_pred CHHHHHHHHHHhhhhch
Q 030220 151 PQHDMVINFTRVNILLV 167 (181)
Q Consensus 151 ~~ed~~~l~~~ak~ipv 167 (181)
+..-.+++.+...+.-|
T Consensus 156 ~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 156 PVGFTRDIKERLGIDNV 172 (432)
T ss_dssp CTTHHHHHHHHHTCCCE
T ss_pred ChHHHHHHHHHHhhccE
Confidence 88888888776654433
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=55.81 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=61.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCeEEcCcccc--------ccHHHHhhccCCcEEEEeeChH---
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGLPVF--------NSVAEAKAETKANASVIYVPPP--- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~ei~GvPVy--------~sl~e~~~~~~~DVaIdfVPp~--- 126 (181)
+||+|.|++|.+|+.+++.+.+.|.+|++.. ++.... +..++.++ .+++++++ ++|++|.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~~~ 77 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP-QYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGGKS 77 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC-CCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTTSS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh-hcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCCCC
Confidence 3799999999999999999999999988643 222211 11222222 23444444 799999887543
Q ss_pred -------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 -------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 -------~a~~~~~eaie~GIk~IV~iTt 148 (181)
.+..+++.|.+.|++.+|.+++
T Consensus 78 ~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 78 LLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 3778888888999988887664
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=63.15 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeE--EcC--ccccc-cHHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTE--HLG--LPVFN-SVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~e--i~G--vPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||+|+|++|..|+.+.+.+.+. .+++++..++...|+. +.| +.+.+ +.++ .+ ++|+++.++|.....+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~--~~DvV~~a~g~~~s~~ 83 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FS--SVGLAFFAAAAEVSRA 83 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GG--GCSEEEECSCHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hc--CCCEEEEcCCcHHHHH
Confidence 68999999999999999988853 5677776665544432 222 23322 1222 23 6999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCC
Q 030220 131 AIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~ 151 (181)
.+..++++|++.|.+ +.-|.
T Consensus 84 ~a~~~~~aG~kvId~-Sa~~r 103 (340)
T 2hjs_A 84 HAERARAAGCSVIDL-SGALE 103 (340)
T ss_dssp HHHHHHHTTCEEEET-TCTTT
T ss_pred HHHHHHHCCCEEEEe-CCCCC
Confidence 999999999985543 65554
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00031 Score=56.36 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccccc---HHHHhhccCCcEEEEeeChHH-HHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNS---VAEAKAETKANASVIYVPPPF-AAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~s---l~e~~~~~~~DVaIdfVPp~~-a~~~~~ 133 (181)
+.+++|+|+ |..|+.+++.+.+.++++++.+|.....+++.|+||+.. ++++.++ ..|-+++.+|... -++..+
T Consensus 12 ~k~v~IiGA-Gg~g~~v~~~l~~~~~~~vgfiDd~~~~~~~~g~~Vlg~~~~~~~~~~~-~~~~v~iAIg~~~~R~~i~~ 89 (220)
T 4ea9_A 12 IGGVVIIGG-GGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQ-GLSRLFVAIGDNRLRQKLGR 89 (220)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECSCC---CBTTBCEEESGGGHHHHHHT-TCCEEEECCCCHHHHHHHHH
T ss_pred CCCEEEEcC-CHHHHHHHHHHHhCCCEEEEEEeCCcccCcCCCeeEECCHHHHHHhhcc-cccEEEEecCCHHHHHHHHH
Confidence 457999999 889999999888889999999886544345789999985 4444432 3666777877544 455566
Q ss_pred HHHHcCCCE
Q 030220 134 EAMEAELDL 142 (181)
Q Consensus 134 eaie~GIk~ 142 (181)
.+.+.|++.
T Consensus 90 ~l~~~g~~~ 98 (220)
T 4ea9_A 90 KARDHGFSL 98 (220)
T ss_dssp HHHHTTCEE
T ss_pred HHHhcCCCc
Confidence 666777654
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.9e-05 Score=68.88 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=73.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC--CC-e-----EEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GG-T-----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~--~G-~-----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
.++|+|+|+ |.+|+.+..++.+.|.+|+-|+-|+. .+ . +-.|+.|+ +++|+.+ ..|++++.+|.+.-.
T Consensus 37 gK~IaVIGy-GsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~--~ADvV~~L~PD~~q~ 112 (491)
T 3ulk_A 37 GKKVVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIP--QADLVINLTPDKQHS 112 (491)
T ss_dssp TSEEEEESC-SHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGG--GCSEEEECSCGGGHH
T ss_pred CCEEEEeCC-ChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHH--hCCEEEEeCChhhHH
Confidence 478999999 99999999999999999887776432 11 1 23689988 6888887 799999999998777
Q ss_pred HHHHHHHHcCCC--EEEEeCCCCCHHH
Q 030220 130 AAIMEAMEAELD--LVVCITEGIPQHD 154 (181)
Q Consensus 130 ~~~~eaie~GIk--~IV~iTtG~~~ed 154 (181)
++.++ ++-..+ ..++|+-||..+.
T Consensus 113 ~vy~~-I~p~lk~G~~L~faHGFnI~~ 138 (491)
T 3ulk_A 113 DVVRT-VQPLMKDGAALGYSHGFNIVE 138 (491)
T ss_dssp HHHHH-HGGGSCTTCEEEESSCHHHHT
T ss_pred HHHHH-HHhhCCCCCEEEecCcccccc
Confidence 77664 766555 4888999998763
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.47 E-value=7.6e-05 Score=65.09 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=67.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCC-CCC-----------------Ce--------EEc--Cccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-KKG-----------------GT--------EHL--GLPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP-~~~-----------------G~--------ei~--GvPVy~--sl 107 (181)
.||.|+|+ |++|+.+.+.+.+. ++++|+..|+ ... +. .+. .++++. +.
T Consensus 4 ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 4 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 68999998 99999999988774 8999987775 111 10 011 234453 56
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++++ .+.++|+++.++|.....+.+..++++|.+.|++ +..
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~i-Sap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SSC
T ss_pred HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEe-ccC
Confidence 6653 2247999999999999999999999999999998 643
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=59.67 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=62.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCC--C-----------CeEE---cCccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKK--G-----------GTEH---LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~--~-----------G~ei---~GvPVy~sl~e~~~~~~~DVaI 120 (181)
.+||.|+|+ |+||+.+.+.+.+.|++|+. ..++.+ . -.+. .|...+.+.+|+.+ ++|++|
T Consensus 19 ~~kIgiIG~-G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aDvVi 95 (245)
T 3dtt_A 19 GMKIAVLGT-GTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA--GAELVV 95 (245)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH--HCSEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh--cCCEEE
Confidence 367999998 99999999999999998663 333332 0 0000 13345668888887 799999
Q ss_pred EeeChHHHHHHHHHH-HHc-CCCEEEEeCCCC
Q 030220 121 IYVPPPFAAAAIMEA-MEA-ELDLVVCITEGI 150 (181)
Q Consensus 121 dfVPp~~a~~~~~ea-ie~-GIk~IV~iTtG~ 150 (181)
+.+|+....+++.+. ... .=+.||.++.|+
T Consensus 96 lavp~~~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 96 NATEGASSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp ECSCGGGHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred EccCcHHHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 999999988888765 221 224567767444
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=65.05 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=69.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cC-------ccccccHHHHhhcc-CCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG-------LPVFNSVAEAKAET-KANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~G-------vPVy~sl~e~~~~~-~~DVaIdfVPp~ 126 (181)
++|.|+|+ |.||+.+...+.+.|++|. .+|+.... .++ .| +..+.+++|+.+.. ++|+++++||+.
T Consensus 2 MkIgVIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~ 79 (478)
T 1pgj_A 2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (478)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCCh
Confidence 47999998 9999999999999898865 55543211 011 14 66788999987631 499999999994
Q ss_pred -HHHHHHHHHHHc-C-CCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 127 -FAAAAIMEAMEA-E-LDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 127 -~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+.++++++... . =+.||..++|.+ .+..++.+..++
T Consensus 80 ~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l~~ 119 (478)
T 1pgj_A 80 AATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQLEA 119 (478)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHHHH
Confidence 778887765543 1 134555456654 444555555544
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=57.72 Aligned_cols=88 Identities=23% Similarity=0.177 Sum_probs=62.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCe-EEcCcccc-------ccHHHHhhccCCcEEEEeeCh---
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGT-EHLGLPVF-------NSVAEAKAETKANASVIYVPP--- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~-ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp--- 125 (181)
++|+|.|+||.+|+.+++.+.+. |.+|++... +.+... .-.++.++ .+++++++ ++|++|.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~~ 78 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIHP 78 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCcc
Confidence 46999999999999999998887 899887533 322110 01223222 24566666 79999988764
Q ss_pred -----HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -----PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -----~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 79 ~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 79 SFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred chhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 56678888899999998877553
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.57 E-value=1.9e-05 Score=63.66 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=61.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
.++|.|+|+ |+||+.+.+.+.+.|.++. .+|+...-... .|+.+. +.+++.+ ++|++++++|+....+++ +.
T Consensus 19 ~~~I~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~-~~~~~~~--~aDvVilav~~~~~~~v~-~l 92 (201)
T 2yjz_A 19 QGVVCIFGT-GDFGKSLGLKMLQCGYSVV-FGSRNPQVSSLLPRGAEVL-CYSEAAS--RSDVIVLAVHREHYDFLA-EL 92 (201)
Confidence 467999998 9999999999988888865 34543321111 356555 6777766 799999999998776665 22
Q ss_pred HH--cCCCEEEEeCCCCCH
Q 030220 136 ME--AELDLVVCITEGIPQ 152 (181)
Q Consensus 136 ie--~GIk~IV~iTtG~~~ 152 (181)
.. .| +.||.++.|++.
T Consensus 93 ~~~~~~-~ivI~~~~G~~~ 110 (201)
T 2yjz_A 93 ADSLKG-RVLIDVSNNQKM 110 (201)
Confidence 11 12 357777999974
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00029 Score=64.42 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=69.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-----cCcc--ccccHHHHhhcc-CCcEEEEeeChH-
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-----LGLP--VFNSVAEAKAET-KANASVIYVPPP- 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-----~GvP--Vy~sl~e~~~~~-~~DVaIdfVPp~- 126 (181)
++++|.|+|. |+||+.....+.+.|++|+ +.|+...- +++ .|.. .+.+++|+.+.. ++|++++.||+.
T Consensus 3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~ 80 (484)
T 4gwg_A 3 AQADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQ 80 (484)
T ss_dssp CCBSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSH
T ss_pred CCCEEEEECh-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChH
Confidence 4578999999 9999999999999999876 44544311 011 1333 367899987632 599999999995
Q ss_pred HHHHHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 127 FAAAAIMEAMEAE--LDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 127 ~a~~~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+.++++++...= =..||. ++.....+..++.+..++
T Consensus 81 ~v~~vl~~l~~~L~~g~iIId-~st~~~~~t~~~~~~l~~ 119 (484)
T 4gwg_A 81 AVDDFIEKLVPLLDTGDIIID-GGNSEYRDTTRRCRDLKA 119 (484)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE-CSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEE-cCCCCchHHHHHHHHHHh
Confidence 7777777766541 134555 444444555555544443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=62.58 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=68.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-EA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~-ea 135 (181)
.++|.|+|. |+||+.+.+.+...|++++ +.|+... .+ +...+.+++++.+ ++|++++.+|... ...++. +.
T Consensus 124 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~dr~~~-~~--~~~~~~~l~ell~--~aDvV~l~~P~~~~t~~~i~~~~ 196 (303)
T 1qp8_A 124 GEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTPK-EG--PWRFTNSLEEALR--EARAAVCALPLNKHTRGLVKYQH 196 (303)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSCC-CS--SSCCBSCSHHHHT--TCSEEEECCCCSTTTTTCBCHHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-cc--CcccCCCHHHHHh--hCCEEEEeCcCchHHHHHhCHHH
Confidence 357999999 9999999999999999976 5665543 12 4444668999988 8999999999873 344443 22
Q ss_pred HHc-C-CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 136 MEA-E-LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 136 ie~-G-Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++. + =..+++++.| +.-|...|.++.++-.|
T Consensus 197 l~~mk~gailin~srg-~~vd~~aL~~aL~~g~i 229 (303)
T 1qp8_A 197 LALMAEDAVFVNVGRA-EVLDRDGVLRILKERPQ 229 (303)
T ss_dssp HTTSCTTCEEEECSCG-GGBCHHHHHHHHHHCTT
T ss_pred HhhCCCCCEEEECCCC-cccCHHHHHHHHHhCCc
Confidence 322 1 1246775665 44455555555544333
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.42 E-value=5.6e-05 Score=66.45 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh------CCeEeeecCCCCCCeEEc----------Cccccc-cHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKGGTEHL----------GLPVFN-SVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~------g~~IVagVdP~~~G~ei~----------GvPVy~-sl~e~~~~~~~DVaI 120 (181)
++||+|+|+||..|+.+.+.+.+. .+++++..+....|+.+. .+.+.+ +. +..+ ++|+++
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~DvVf 85 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLG--GHDAVF 85 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHT--TCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhc--CCCEEE
Confidence 479999999999999999988874 468887665443343221 122322 22 2233 799999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ 152 (181)
.++|...+.+.+..+ ++|++.|.+ +.-+..
T Consensus 86 ~alg~~~s~~~~~~~-~~G~~vIDl-Sa~~R~ 115 (352)
T 2nqt_A 86 LALPHGHSAVLAQQL-SPETLIIDC-GADFRL 115 (352)
T ss_dssp ECCTTSCCHHHHHHS-CTTSEEEEC-SSTTTC
T ss_pred ECCCCcchHHHHHHH-hCCCEEEEE-CCCccC
Confidence 999999999999999 999876655 777753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=61.26 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=67.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-----EE-----------------------cCccccccHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EH-----------------------LGLPVFNSVAE 109 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-----ei-----------------------~GvPVy~sl~e 109 (181)
..||.|+|+ |.||+.+...+.+.|++|+ .+|+..... .+ ..+....++++
T Consensus 4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVT-AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 368999999 9999999999999999976 345443110 00 11355668888
Q ss_pred HhhccCCcEEEEeeChH--HHHHHHHHHHHc-CCCEE-EEeCCCCCHHHHHHH
Q 030220 110 AKAETKANASVIYVPPP--FAAAAIMEAMEA-ELDLV-VCITEGIPQHDMVIN 158 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~--~a~~~~~eaie~-GIk~I-V~iTtG~~~ed~~~l 158 (181)
+.+ ++|++|..+|+. ...++..++.+. .-..| +..|.+++..++.+.
T Consensus 82 ~~~--~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~ 132 (283)
T 4e12_A 82 AVK--DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGY 132 (283)
T ss_dssp HTT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHH
T ss_pred Hhc--cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhh
Confidence 777 799999999987 666666665543 22334 435899998766543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0009 Score=54.61 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CC--Ce------E--EcCcccc-------ccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KG--GT------E--HLGLPVF-------NSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~--G~------e--i~GvPVy-------~sl~e~~~~~~~DVa 119 (181)
+++|+|.|+||.+|+.+++.+.+.|.++++.+... .. .. + ..|+.++ .++.++++ ++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCCEE
Confidence 46799999999999999999999999988643321 10 00 0 0133322 24666666 79999
Q ss_pred EEeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030220 120 VIYVPP---PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 120 IdfVPp---~~a~~~~~eaie~G-Ik~IV~ 145 (181)
|.+... .....+++.|.++| ++.+|.
T Consensus 82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 82 ISTVGSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EECCcchhhhhHHHHHHHHHhcCCCceEee
Confidence 998875 34677888888898 999874
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=4.1e-05 Score=61.68 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=63.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM- 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~- 133 (181)
.+||.|+|+ |+||+.+.+.+.+.|.+++. +|+.... +.+ .|+.+. +++++.+ ++|++++++|+....++++
T Consensus 28 ~~~I~iiG~-G~~G~~la~~l~~~g~~V~~-~~r~~~~~~~~~~~g~~~~-~~~~~~~--~~DvVi~av~~~~~~~v~~l 102 (215)
T 2vns_A 28 APKVGILGS-GDFARSLATRLVGSGFKVVV-GSRNPKRTARLFPSAAQVT-FQEEAVS--SPEVIFVAVFREHYSSLCSL 102 (215)
T ss_dssp -CCEEEECC-SHHHHHHHHHHHHTTCCEEE-EESSHHHHHHHSBTTSEEE-EHHHHTT--SCSEEEECSCGGGSGGGGGG
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHHHHcCCcee-cHHHHHh--CCCEEEECCChHHHHHHHHH
Confidence 367999996 99999999999988888663 4543211 011 256555 7777776 7999999999976655543
Q ss_pred -HHHHcCCCEEEEeCCCCCHHHH
Q 030220 134 -EAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 134 -eaie~GIk~IV~iTtG~~~ed~ 155 (181)
... .=+.|+.++.|++.+.+
T Consensus 103 ~~~~--~~~~vv~~s~g~~~~~l 123 (215)
T 2vns_A 103 SDQL--AGKILVDVSNPTEQEHL 123 (215)
T ss_dssp HHHH--TTCEEEECCCCCHHHHH
T ss_pred HHhc--CCCEEEEeCCCcccccc
Confidence 122 23467777999987654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.7e-06 Score=69.41 Aligned_cols=93 Identities=9% Similarity=-0.017 Sum_probs=59.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||.|+|+ |+||+.+.+.+.+. ++++...|+.... ++ ..|. ++.+++++.+ ++|++|+++|+....+++++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~--~~DvVilav~~~~~~~v~~~ 77 (276)
T 2i76_A 3 LVLNFVGT-GTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVANH 77 (276)
T ss_dssp -CCEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTT
T ss_pred ceEEEEeC-CHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHh--cCCEEEEeCChHHHHHHHHH
Confidence 57999998 99999999887776 7765555654311 11 1245 6777777666 79999999999998888876
Q ss_pred HHHcCCCEEEEeCCCCCHHHHHH
Q 030220 135 AMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 135 aie~GIk~IV~iTtG~~~ed~~~ 157 (181)
+. ..=+.|+..+++++.+.+..
T Consensus 78 l~-~~~~ivi~~s~~~~~~~l~~ 99 (276)
T 2i76_A 78 LN-LGDAVLVHCSGFLSSEIFKK 99 (276)
T ss_dssp TC-CSSCCEEECCSSSCGGGGCS
T ss_pred hc-cCCCEEEECCCCCcHHHHHH
Confidence 54 22235667667888866543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00017 Score=60.32 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=61.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC--CCCC-eEE--c------C-----ccccc--cHHHHhhccCCcEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGG-TEH--L------G-----LPVFN--SVAEAKAETKANASV 120 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP--~~~G-~ei--~------G-----vPVy~--sl~e~~~~~~~DVaI 120 (181)
+||.|+|+ |.||+.....+.+.|.++. .+|+ .... +.+ . | +.+.+ +++++.+ ++|+++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~D~vi 76 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVVL 76 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh--cCCEEE
Confidence 37999999 9999999999988888866 4454 2100 000 1 1 24555 7777766 799999
Q ss_pred EeeChHHHHHHHHHHHHcCCC---EEEEeCCCC
Q 030220 121 IYVPPPFAAAAIMEAMEAELD---LVVCITEGI 150 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk---~IV~iTtG~ 150 (181)
+++|+....++++++.. ++ .|+.++.|+
T Consensus 77 ~~v~~~~~~~v~~~i~~--l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 77 LGVSTDGVLPVMSRILP--YLKDQYIVLISKGL 107 (335)
T ss_dssp ECSCGGGHHHHHHHHTT--TCCSCEEEECCCSE
T ss_pred EcCChHHHHHHHHHHhc--CCCCCEEEEEcCcC
Confidence 99999999888877643 32 466666798
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00025 Score=55.73 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=58.9
Q ss_pred eEEEEccCCCCcchhhHHHH-HhCCeEeee-cCCC-CC------CeEE----cCccccccHHHHhhccCCcEEEEeeCh-
Q 030220 60 RVICQGITGKNGTFHTEQAI-EYGTKMVGG-VTPK-KG------GTEH----LGLPVFNSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~-~~g~~IVag-VdP~-~~------G~ei----~GvPVy~sl~e~~~~~~~DVaIdfVPp- 125 (181)
+|+|.|++|.+|+.+++.+. +.|.+|++. -++. +. +..+ .++.=..+++++++ ++|++|.....
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~ag~~ 84 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGAMES 84 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESCCCC
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcCCCC
Confidence 49999999999999999999 789998764 2333 11 1011 11211124666666 79999988754
Q ss_pred --HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --~~a~~~~~eaie~GIk~IV~iT 147 (181)
. ++.+++.+.+.|++.+|.++
T Consensus 85 n~~-~~~~~~~~~~~~~~~iv~iS 107 (221)
T 3r6d_A 85 GSD-MASIVKALSRXNIRRVIGVS 107 (221)
T ss_dssp HHH-HHHHHHHHHHTTCCEEEEEE
T ss_pred Chh-HHHHHHHHHhcCCCeEEEEe
Confidence 3 67778888889998887765
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00073 Score=55.16 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=60.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CC----C--e---E--EcCcccc-------ccHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KG----G--T---E--HLGLPVF-------NSVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~----G--~---e--i~GvPVy-------~sl~e~~~~~~~DV 118 (181)
+++|+|.|+||..|+.+++.+.+.|.++++..-.. .. . + + -.|+.++ .++.++++ ++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCCE
Confidence 46799999999999999999999999988653321 00 0 0 0 0133222 24566666 7999
Q ss_pred EEEeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030220 119 SVIYVPP---PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 119 aIdfVPp---~~a~~~~~eaie~G-Ik~IV~ 145 (181)
+|.+... .....+++.|.++| ++.+|.
T Consensus 80 vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 80 VICAAGRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEECSSSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEECCcccccccHHHHHHHHHhcCCceEEee
Confidence 9998764 56677888888898 998874
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00093 Score=54.68 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-e----E-----EcCcccc-------ccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T----E-----HLGLPVF-------NSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~----e-----i~GvPVy-------~sl~e~~~~~~~DVaI 120 (181)
+++|+|.|+||.+|+.+++.+.+.|.+|++........ . . -.|+.++ .++.++++ ++|++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCEEE
Confidence 46799999999999999999999999988653321100 0 0 0133322 24666666 799999
Q ss_pred EeeCh-------HHHHHHHHHHHHcC-CCEEEE
Q 030220 121 IYVPP-------PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 121 dfVPp-------~~a~~~~~eaie~G-Ik~IV~ 145 (181)
.+... .....+++.|.++| ++.+|.
T Consensus 82 ~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 82 SALAGGVLSHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp ECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred ECCccccchhhHHHHHHHHHHHHhcCCCceEEe
Confidence 88754 35677888888999 998874
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00036 Score=60.91 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=67.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--------CeE---Ec------CccccccHHHHhhccCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------GTE---HL------GLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--------G~e---i~------GvPVy~sl~e~~~~~~~DVaI 120 (181)
.+||.|+|+ |.||......+.+.|.++. .+++... +.. .. ++.+.++++++.+ ++|++|
T Consensus 29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~--~aDvVi 104 (356)
T 3k96_A 29 KHPIAILGA-GSWGTALALVLARKGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE--GVTDIL 104 (356)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT--TCCEEE
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh--cCCEEE
Confidence 468999999 9999999999998888865 3333210 000 01 2445678888887 799999
Q ss_pred EeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030220 121 IYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 154 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed 154 (181)
++||+....+++++.... . =..|+..+.|+..+.
T Consensus 105 laVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t 140 (356)
T 3k96_A 105 IVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS 140 (356)
T ss_dssp ECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTT
T ss_pred ECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc
Confidence 999999999998877654 1 234666689998763
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00065 Score=56.06 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=61.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CC---C--e-----EEcCcccc-------ccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KG---G--T-----EHLGLPVF-------NSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~---G--~-----ei~GvPVy-------~sl~e~~~~~~~DVa 119 (181)
+++|+|.|+||.+|+.+++.+.+.|.+|++..... .. . + .-.|+.+. .++.++++ ++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d~v 81 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVDIV 81 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCCEE
Confidence 46799999999999999999999999988653321 10 0 0 00123222 24666666 79999
Q ss_pred EEeeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030220 120 VIYVPP---PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 120 IdfVPp---~~a~~~~~eaie~G-Ik~IV~ 145 (181)
|.+... .....+++.|.++| ++.+|.
T Consensus 82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 82 ISALPFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred EECCCccchhhHHHHHHHHHHhCCccEEec
Confidence 998874 45678888888999 998874
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00035 Score=59.20 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-------CeEeeecCCCCC------CeEE----------------cCccccccHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG------GTEH----------------LGLPVFNSVAE 109 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-------~~IVagVdP~~~------G~ei----------------~GvPVy~sl~e 109 (181)
+||.|+|+ |.||......+.+.| .++. .+|+... ...+ .++.+.+++++
T Consensus 9 mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 9 KKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 58999999 999999999888877 6654 4443321 0000 12344567888
Q ss_pred HhhccCCcEEEEeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCC
Q 030220 110 AKAETKANASVIYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIP 151 (181)
Q Consensus 110 ~~~~~~~DVaIdfVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~ 151 (181)
+.+ ++|++|++||+....+++++.... + =..|+.++.|+.
T Consensus 87 ~~~--~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 87 AAE--DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HHT--TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred HHc--CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 776 799999999999888888776443 1 135677788887
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=65.42 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=70.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC--CCe----E-----------------EcCccccccHHHHhhccC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGT----E-----------------HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~--~G~----e-----------------i~GvPVy~sl~e~~~~~~ 115 (181)
+||.|+|+ |.||......+.+.|.+++ ++|... ... . ...+....+++++.+ +
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~--~ 78 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGANVR-CIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP--E 78 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG--G
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCCEEE-EEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh--c
Confidence 58999999 9999999999999999977 444332 110 0 012445567888777 7
Q ss_pred CcEEEEeeChH----------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 116 ANASVIYVPPP----------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 116 ~DVaIdfVPp~----------~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+|++|++||.. .+.++++...+. .-..+|+..+.++..-..++.+..++
T Consensus 79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999999887 788888777664 22334444566877766666655433
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00024 Score=62.69 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCcchhhH-HHHHhCCeEeee--cCCCCCCeEEc-----Cccccc--cHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTE-QAIEYGTKMVGG--VTPKKGGTEHL-----GLPVFN--SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k-~~~~~g~~IVag--VdP~~~G~ei~-----GvPVy~--sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
++||+|+|++|..|+.+.+ .+.+.++.++.. +.....|+.+. .+++.+ +.++ .+ ++|+++.++|...
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~--~~DvVf~a~g~~~ 77 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LK--ALDIIVTCQGGDY 77 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HH--TCSEEEECSCHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hc--CCCEEEECCCchh
Confidence 3689999999999999999 555455543321 22222343331 234443 2344 34 7999999999999
Q ss_pred HHHHHHHHHHcCCCE-EEE
Q 030220 128 AAAAIMEAMEAELDL-VVC 145 (181)
Q Consensus 128 a~~~~~eaie~GIk~-IV~ 145 (181)
..+.+..++++|++. ||-
T Consensus 78 s~~~a~~~~~~G~k~vVID 96 (367)
T 1t4b_A 78 TNEIYPKLRESGWQGYWID 96 (367)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEc
Confidence 999999999999964 444
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=64.17 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=66.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeec-CCCCCCeEEc----------------CccccccHHH--HhhccCCc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGTEHL----------------GLPVFNSVAE--AKAETKAN 117 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagV-dP~~~G~ei~----------------GvPVy~sl~e--~~~~~~~D 117 (181)
+.||.|+|+||--|+...+.+.+. .++|+... +....|+.+. ++.+ .++++ ..+ ++|
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v-~~~~~~~~~~--~~D 95 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVV-QECKPEGNFL--ECD 95 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBC-EESSSCTTGG--GCS
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceE-EeCchhhhcc--cCC
Confidence 478999999999999999988875 67887654 4555554431 1122 11111 223 799
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
+++.++|...+.+.+..++++|++.|-+ +.-|.
T Consensus 96 vvf~alp~~~s~~~~~~~~~~G~~VIDl-Sa~fR 128 (381)
T 3hsk_A 96 VVFSGLDADVAGDIEKSFVEAGLAVVSN-AKNYR 128 (381)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEC-CSTTT
T ss_pred EEEECCChhHHHHHHHHHHhCCCEEEEc-CCccc
Confidence 9999999999999999999999997766 76554
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00038 Score=60.11 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-------CeEeeecCCCCC-----C-eEE----------------cCccccccHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG-----G-TEH----------------LGLPVFNSVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-------~~IVagVdP~~~-----G-~ei----------------~GvPVy~sl~ 108 (181)
++||.|+|+ |.||......+.+.| .+|. .+|+... - +.+ .++.+.++++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 98 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLA 98 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHH
Confidence 358999999 999999999888877 7765 3443221 0 000 1345566788
Q ss_pred HHhhccCCcEEEEeeChHHHHHHHHHHHHc---CC---CEEEEeCCCCCH
Q 030220 109 EAKAETKANASVIYVPPPFAAAAIMEAMEA---EL---DLVVCITEGIPQ 152 (181)
Q Consensus 109 e~~~~~~~DVaIdfVPp~~a~~~~~eaie~---GI---k~IV~iTtG~~~ 152 (181)
++.+ ++|++|++||+....++++++... .+ ..|+.++.|++.
T Consensus 99 ea~~--~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~ 146 (375)
T 1yj8_A 99 SVIN--DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV 146 (375)
T ss_dssp HHHT--TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred HHHc--CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence 8776 799999999999998888876440 22 256666779876
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00098 Score=50.84 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=60.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCeE-EcCccc-------cccHHHHhhccCCcEEEEeeCh----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTE-HLGLPV-------FNSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~e-i~GvPV-------y~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
++|+|.|++|..|+.+++.+.+.|.++++.. ++...... ..++.+ .++++++++ ++|++|.+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~~~ 81 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRNDL 81 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEEEECccCCCCC
Confidence 5799999999999999999999999988642 22211000 012222 124566666 79999988764
Q ss_pred -------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 82 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss 111 (206)
T 1hdo_A 82 SPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (206)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 24677888888899988887664
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00075 Score=55.56 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=61.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe----E--EcCccccccHHHHhhccCCcEEEEeeCh-------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----E--HLGLPVFNSVAEAKAETKANASVIYVPP------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~----e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp------- 125 (181)
++|+|.|++|..|+.+++.+.+.|.+|++......... + ..++. ..+++++++ ++|++|.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~~~~~~~~ 79 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLN--DVDAVVHLAATRGSQGKI 79 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTT--TCSEEEECCCCCCSSSCG
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhc--CCCEEEEccccCCCCChH
Confidence 68999999999999999999999999886543211111 0 12444 456777776 89999987543
Q ss_pred -------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 -------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 -------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.++|++.+|.++
T Consensus 80 ~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 80 SEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3457788888899999776655
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00051 Score=62.05 Aligned_cols=103 Identities=20% Similarity=0.144 Sum_probs=71.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE----------------------cCccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH----------------------LGLPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei----------------------~GvPVy~sl~e~~~~~ 114 (181)
..||.|+|. |.||......+.+.|+++++ .+|+.+.. .+ ..+....+++++.+
T Consensus 8 ~~~~~vIGl-G~vG~~~A~~La~~G~~V~~~D~~~~kv~-~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~-- 83 (446)
T 4a7p_A 8 SVRIAMIGT-GYVGLVSGACFSDFGHEVVCVDKDARKIE-LLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVK-- 83 (446)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHH-HHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHT--
T ss_pred ceEEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHh--
Confidence 468999999 99999999999999999775 45555422 11 01344557877777
Q ss_pred CCcEEEEeeChH-----------HHHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 115 KANASVIYVPPP-----------FAAAAIMEAMEAE-LDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 115 ~~DVaIdfVPp~-----------~a~~~~~eaie~G-Ik~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++|+++++||.. .+.++++...+.= -..+|+..++++..-.+++.+..++
T Consensus 84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 799999997544 4777777666542 2224444668888887777776654
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=62.69 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh-HHHHHHH-HHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI-MEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~-~ea 135 (181)
.++|.|+|. |+||+.+++.+...|++|+ +.|+.... ........+++|+.+ ++|++++.+|. +....++ ++.
T Consensus 122 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~--~~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~ 195 (290)
T 3gvx_A 122 GKALGILGY-GGIGRRVAHLAKAFGMRVI-AYTRSSVD--QNVDVISESPADLFR--QSDFVLIAIPLTDKTRGMVNSRL 195 (290)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSCCC--TTCSEECSSHHHHHH--HCSEEEECCCCCTTTTTCBSHHH
T ss_pred cchheeecc-CchhHHHHHHHHhhCcEEE-EEeccccc--cccccccCChHHHhh--ccCeEEEEeeccccchhhhhHHH
Confidence 357999999 9999999999999999987 55655422 223455668999988 79999999995 3333333 222
Q ss_pred HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 136 MEA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 136 ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++. +- ..+|+++.|=.+ |...|.++.+.
T Consensus 196 l~~mk~gailIN~aRG~~v-d~~aL~~aL~~ 225 (290)
T 3gvx_A 196 LANARKNLTIVNVARADVV-SKPDMIGFLKE 225 (290)
T ss_dssp HTTCCTTCEEEECSCGGGB-CHHHHHHHHHH
T ss_pred HhhhhcCceEEEeehhccc-CCcchhhhhhh
Confidence 222 21 246775555444 44445554443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00067 Score=56.95 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=62.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CCCeE--------EcCccc-------cccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGGTE--------HLGLPV-------FNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~G~e--------i~GvPV-------y~sl~e~~~~~~~DVaId 121 (181)
+++|+|.|+||..|+.+++.+.+.|.++++.+... ..... -.++.+ ..++.++++++++|++|.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 35799999999999999999999999988654422 10000 012222 224667776668999999
Q ss_pred eeCh---HHHHHHHHHHHHcC-CCEEEE
Q 030220 122 YVPP---PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 122 fVPp---~~a~~~~~eaie~G-Ik~IV~ 145 (181)
+... .....+++.|.++| ++.++.
T Consensus 90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 90 TVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 8775 45677888888899 999875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00056 Score=57.61 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC---------CeEEcCc---------cccccHHHHhhccCCcEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG---------GTEHLGL---------PVFNSVAEAKAETKANASV 120 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~---------G~ei~Gv---------PVy~sl~e~~~~~~~DVaI 120 (181)
+||.|+|+ |.||+.+...+.+.|.++. .+|+... +..+.+. .++.+++++.+ ++|+++
T Consensus 5 mki~iiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi 80 (359)
T 1bg6_A 5 KTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVIL 80 (359)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh--cCCEEE
Confidence 68999999 9999999998888888865 4554321 1111111 35678888776 799999
Q ss_pred EeeChHHHHHHHHHHHH
Q 030220 121 IYVPPPFAAAAIMEAME 137 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie 137 (181)
+++|+....++++.+..
T Consensus 81 ~~v~~~~~~~~~~~l~~ 97 (359)
T 1bg6_A 81 IVVPAIHHASIAANIAS 97 (359)
T ss_dssp ECSCGGGHHHHHHHHGG
T ss_pred EeCCchHHHHHHHHHHH
Confidence 99999999888877654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0014 Score=54.05 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeE-----EcCcccc-------ccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE-----HLGLPVF-------NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~e-----i~GvPVy-------~sl~e~~~~~~~DVaIdfVPp 125 (181)
++|+|.|+||.+|+.+++.+.+.|.+|++..- +...... -.|+.++ .++.++++ ++|++|.+.+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a~~ 89 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISALAF 89 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECCch
Confidence 47999999999999999999999999886433 3211000 0233332 24566666 79999998875
Q ss_pred ---HHHHHHHHHHHHcC-CCEEEE
Q 030220 126 ---PFAAAAIMEAMEAE-LDLVVC 145 (181)
Q Consensus 126 ---~~a~~~~~eaie~G-Ik~IV~ 145 (181)
.....+++.|.++| ++.+|.
T Consensus 90 ~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 90 PQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp GGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEe
Confidence 34677888888888 998874
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00078 Score=57.16 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=64.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC------CCeE--------EcCccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTE--------HLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~------~G~e--------i~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
.+||+|+|+ |.||......+.+.|.+|..-.++.. .|.. ...+.+.++.+++ + ++|++|++|
T Consensus 19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vilav 94 (318)
T 3hwr_A 19 GMKVAIMGA-GAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-Q--GADLVLFCV 94 (318)
T ss_dssp -CEEEEESC-SHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-T--TCSEEEECC
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-C--CCCEEEEEc
Confidence 478999999 99999999999888888664433321 0101 1133445566553 4 799999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed 154 (181)
|+....++++++... + =..|+.++-|+..++
T Consensus 95 k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 127 (318)
T 3hwr_A 95 KSTDTQSAALAMKPALAKSALVLSLQNGVENAD 127 (318)
T ss_dssp CGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred ccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence 999998888776543 1 135676799999864
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0006 Score=61.20 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=63.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCC--CCCe--------------E-E-----cCccccccHHHHhhc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPK--KGGT--------------E-H-----LGLPVFNSVAEAKAE 113 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~--~~G~--------------e-i-----~GvPVy~sl~e~~~~ 113 (181)
++||.|+|+ |.||..+...+.+. |+++++ +|.. +... + + .++....+++++.+
T Consensus 5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~-~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~- 81 (467)
T 2q3e_A 5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTV-VDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK- 81 (467)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH-
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh-
Confidence 468999998 99999999998887 788664 4432 1110 0 0 13445567777766
Q ss_pred cCCcEEEEeeChHH---------------HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 114 TKANASVIYVPPPF---------------AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 114 ~~~DVaIdfVPp~~---------------a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++|+++++||... +.++++...+. .-..+|+.++.++.....++.+..++
T Consensus 82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~ 147 (467)
T 2q3e_A 82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA 147 (467)
T ss_dssp -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH
T ss_pred -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH
Confidence 7999999987533 34555555543 22234443545665555555555433
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00083 Score=55.54 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEc--Ccccc-------ccHHHHhhccCCcEEEEeeChH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHL--GLPVF-------NSVAEAKAETKANASVIYVPPP- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~--GvPVy-------~sl~e~~~~~~~DVaIdfVPp~- 126 (181)
+++|+|.|++|..|+.+++.+.+.|.+|++... +... .++. ++.++ .+++++++ ++|++|.+....
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~~ 89 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI-QRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYYP 89 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCG-GGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC-----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhh-hhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccCc
Confidence 358999999999999999999999999886432 2221 1111 22222 23556665 799998876421
Q ss_pred ---------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ---------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ---------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.+|.+++
T Consensus 90 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 90 SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 2456778888889877776563
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=50.53 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=58.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE-cCccccc-cHH----HHhhccCCcEEEEeeCh------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH-LGLPVFN-SVA----EAKAETKANASVIYVPP------ 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei-~GvPVy~-sl~----e~~~~~~~DVaIdfVPp------ 125 (181)
+||+|.|+||..|+.+++.+.+.|.+|++... +.+.. +. .++.++. ++. +.++ ++|++|.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT-QTHKDINILQKDIFDLTLSDLS--DQNVVVDAYGISPDEAE 77 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH-HHCSSSEEEECCGGGCCHHHHT--TCSEEEECCCSSTTTTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh-hccCCCeEEeccccChhhhhhc--CCCEEEECCcCCccccc
Confidence 47999999999999999999999999886432 21100 00 1222221 221 4444 79999998854
Q ss_pred ---HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---~~a~~~~~eaie~GIk~IV~iTt 148 (181)
...+.+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEec
Confidence 45577777777888888877664
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00088 Score=53.45 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=60.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeec-CCCCCCe-EEcCcccc-------ccHHHHhhccCCcEEEEeeChH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGT-EHLGLPVF-------NSVAEAKAETKANASVIYVPPP- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagV-dP~~~G~-ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp~- 126 (181)
+++|+|.|++|.+|+.+++.+.+.| .+|++.. ++.+... .-.++.++ .+++++++ ++|++|......
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~~ 100 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGED 100 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCSTT
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCCc
Confidence 5789999999999999999999998 7877642 2322110 00122222 24666666 789999776653
Q ss_pred ---HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ---FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ---~a~~~~~eaie~GIk~IV~iTt 148 (181)
.++.+++.+.+.|++.||.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 101 LDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hhHHHHHHHHHHHHcCCCEEEEEec
Confidence 3566777788889998888775
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0022 Score=52.45 Aligned_cols=89 Identities=24% Similarity=0.116 Sum_probs=60.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeec-CCCCCC-eE--EcCcccc-------ccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGG-TE--HLGLPVF-------NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagV-dP~~~G-~e--i~GvPVy-------~sl~e~~~~~~~DVaIdfVPp 125 (181)
+++|+|.|+||.+|+.+++.+.+.| .+|++.. +|.... .. ..|+.++ .+++++++ ++|+++.+...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~ 82 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVTNY 82 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeCCC
Confidence 3679999999999999999999988 8988653 333210 00 0122222 24566666 79999988763
Q ss_pred ----------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ----------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ----------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 83 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 24556778888899998887443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=62.25 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=63.7
Q ss_pred ceEEEEccCCCCcchhhHHHH-HhCCeEeeecCCCCCCeE-E--cCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGTE-H--LGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~~g~~IVagVdP~~~G~e-i--~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~ 133 (181)
++|.|+|+ |+||+.+.+.+. ..|++|+ +.|+.....+ . .|+....+++++++ ++|++++.+|... ....+.
T Consensus 164 ~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~vp~~~~t~~li~ 239 (348)
T 2w2k_A 164 HVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAPADAETEKALGAERVDSLEELAR--RSDCVSVSVPYMKLTHHLID 239 (348)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCSGGGTTCBC
T ss_pred CEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHhhcCcEEeCCHHHHhc--cCCEEEEeCCCChHHHHHhh
Confidence 57999999 999999999999 8899977 5666542211 1 25555568889887 7999999999864 333331
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhh
Q 030220 134 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 134 -eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+.++. +-. .+++.+.| +.-|...|.++.+
T Consensus 240 ~~~l~~mk~gailin~srg-~~vd~~aL~~aL~ 271 (348)
T 2w2k_A 240 EAFFAAMKPGSRIVNTARG-PVISQDALIAALK 271 (348)
T ss_dssp HHHHHHSCTTEEEEECSCG-GGBCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCC-chhCHHHHHHHHH
Confidence 22222 222 45675566 3333333444443
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00024 Score=62.70 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=69.8
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc--------Cccccc-cHHHHhhccCCcEEEEeeC
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL--------GLPVFN-SVAEAKAETKANASVIYVP 124 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~--------GvPVy~-sl~e~~~~~~~DVaIdfVP 124 (181)
-..+.||.|+|+||-.|+...+.+.+. .++|+..-+....|+.+. .+++.+ +.+++.+ ++|+++.+.|
T Consensus 10 ~~~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~--~~Dvvf~alp 87 (351)
T 1vkn_A 10 HHHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALP 87 (351)
T ss_dssp --CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCS
T ss_pred ccceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhc--CCCEEEECCC
Confidence 445789999999999999999999885 788887656555564432 233333 3444434 6999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
...+.+.+..+ +|++.|= .+.-|.-+|
T Consensus 88 ~~~s~~~~~~~--~g~~VID-lSsdfRl~~ 114 (351)
T 1vkn_A 88 AGASYDLVREL--KGVKIID-LGADFRFDD 114 (351)
T ss_dssp TTHHHHHHTTC--CSCEEEE-SSSTTTCSS
T ss_pred cHHHHHHHHHh--CCCEEEE-CChhhhCCc
Confidence 99999999999 8887444 477776554
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00039 Score=61.71 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=59.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCCeEE---------------------cC-ccccccHHHHhhcc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEH---------------------LG-LPVFNSVAEAKAET 114 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G~ei---------------------~G-vPVy~sl~e~~~~~ 114 (181)
+||.|+|+ |.||..+...+.+.|.++++ +|.. +.. .+ .| +....+++++++
T Consensus 1 mkI~VIG~-G~vG~~~A~~la~~G~~V~~-~d~~~~~~~-~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~-- 75 (436)
T 1mv8_A 1 MRISIFGL-GYVGAVCAGCLSARGHEVIG-VDVSSTKID-LINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL-- 75 (436)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEE-ECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEE-EECCHHHHH-HHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc--
Confidence 47999998 99999999999998998764 4432 211 00 12 444557777776
Q ss_pred CCcEEEEeeChHH----------HHHHHHHHHHc-C----CCEEEEeCCCCCHHH
Q 030220 115 KANASVIYVPPPF----------AAAAIMEAMEA-E----LDLVVCITEGIPQHD 154 (181)
Q Consensus 115 ~~DVaIdfVPp~~----------a~~~~~eaie~-G----Ik~IV~iTtG~~~ed 154 (181)
++|+++++||... +.+++++..+. . =..||. .+.++...
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~ 129 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGT 129 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTH
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCc
Confidence 7999999998655 67777665442 2 234554 44555433
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00042 Score=62.82 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=68.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--c-------C-------------ccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--L-------G-------------LPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--~-------G-------------vPVy~sl~e~~~~~ 114 (181)
.+||.|+|+ |.||......+.+.|+++++ .+|+.+.. .+ . | +....++++.++
T Consensus 8 ~~~I~VIG~-G~vG~~lA~~la~~G~~V~~~d~~~~~v~-~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~-- 83 (478)
T 2y0c_A 8 SMNLTIIGS-GSVGLVTGACLADIGHDVFCLDVDQAKID-ILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA-- 83 (478)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH--
T ss_pred CceEEEECc-CHHHHHHHHHHHhCCCEEEEEECCHHHHH-HHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhh--
Confidence 478999999 99999999999988999774 23332211 00 1 1 233345666666
Q ss_pred CCcEEEEeeCh----------HHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 115 KANASVIYVPP----------PFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 115 ~~DVaIdfVPp----------~~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
++|+++++||. ..+.++++..... .-..+|+...+++....+++.+...
T Consensus 84 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 84 HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA 143 (478)
T ss_dssp HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence 68999999998 8888888876653 3234444467887766555555443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00044 Score=61.28 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=64.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCCeEEc--C--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--G--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G~ei~--G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||+|+|+||.-|+...+.+.+.++ +++....+...|+.+. | +.+-+.-.+..+ ++|+++.++|...+.+.
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~~ 80 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKY 80 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhc--CCCEEEECCChHhHHHH
Confidence 6899999999999999998888644 4555555666564431 2 222211112223 79999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCC
Q 030220 132 IMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~ 150 (181)
+..++++|++.|-+ +.-|
T Consensus 81 a~~~~~~G~~vIDl-Sa~~ 98 (366)
T 3pwk_A 81 APYAVKAGVVVVDN-TSYF 98 (366)
T ss_dssp HHHHHHTTCEEEEC-SSTT
T ss_pred HHHHHHCCCEEEEc-CCcc
Confidence 99999999986655 6544
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0015 Score=53.08 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--c---Cc----c-ccccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L---GL----P-VFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~---Gv----P-Vy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||.|+|+ |.||......+.+.|.++.. +|+.... ..+ . |. . ..++ .+..+ ++|++++++|+..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~-~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQG-WLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLA--TSDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEE-ECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHH--TCSEEEECSCGGG
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEEE-EEcCccceeeEEEEcCCCceeeeeeeecC-ccccC--CCCEEEEEecHHh
Confidence 37999999 99999999999998988664 4433221 111 1 21 1 1233 34455 7999999999999
Q ss_pred HHHHHHHHHHc-C-CCEEEEeCCCCCH
Q 030220 128 AAAAIMEAMEA-E-LDLVVCITEGIPQ 152 (181)
Q Consensus 128 a~~~~~eaie~-G-Ik~IV~iTtG~~~ 152 (181)
..+++++.... + =..|+.++.|+..
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 98888776543 1 1245666899865
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00077 Score=59.47 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-C--eEe-eecCCCCCCe---E--------E----cCccccccHHHHhhccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-T--KMV-GGVTPKKGGT---E--------H----LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-~--~IV-agVdP~~~G~---e--------i----~GvPVy~sl~e~~~~~~~DVa 119 (181)
+||+|+|+ |.+|+.+++.+.+.| . +++ ++.++.+... + + .++.-.+++++++++.++|++
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 58999999 999999999998875 3 433 2333222110 0 0 111113457777775569999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCEEE
Q 030220 120 VIYVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~GIk~IV 144 (181)
|.++|+.....+++.|+++|++.+-
T Consensus 81 in~ag~~~~~~v~~a~l~~g~~vvD 105 (405)
T 4ina_A 81 LNIALPYQDLTIMEACLRTGVPYLD 105 (405)
T ss_dssp EECSCGGGHHHHHHHHHHHTCCEEE
T ss_pred EECCCcccChHHHHHHHHhCCCEEE
Confidence 9999999999999999999999664
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0025 Score=53.70 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC------CCeEEc---------CccccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTEHL---------GLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~------~G~ei~---------GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+||+|+|+ |.||......+.+.|.+|. .+++.. .|..+. .+.++++.+++ + ++|+++++|
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~-~--~~D~vilav 77 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGEDVH-FLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEI-G--PMDLVLVGL 77 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSCCEE-EECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHH-C--CCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHHc-C--CCCEEEEec
Confidence 57999999 9999999999988888766 344332 111111 23455666653 4 799999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHHH
Q 030220 124 PPPFAAAAIMEAMEA-E-LDLVVCITEGIPQHD 154 (181)
Q Consensus 124 Pp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ed 154 (181)
|+....++++++... + =..||.+.-|+..++
T Consensus 78 k~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~ 110 (312)
T 3hn2_A 78 KTFANSRYEELIRPLVEEGTQILTLQNGLGNEE 110 (312)
T ss_dssp CGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHH
T ss_pred CCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHH
Confidence 999999888887543 2 235777799997543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=49.32 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=60.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe-E-EcCcccc-cc---HHHHhh--ccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT-E-HLGLPVF-NS---VAEAKA--ETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~-e-i~GvPVy-~s---l~e~~~--~~~~DVaIdfVPp~~ 127 (181)
+..+|+|+|+ |.+|+.+++.+.+.|.+++.. .++.+... . -.|..++ .+ .+.+.+ -.++|++|++++...
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~ 96 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS 96 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence 3467999998 999999999999999887642 33332110 0 1233332 22 222211 126899999999877
Q ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCHH
Q 030220 128 AAAAIMEAME--AELDLVVCITEGIPQH 153 (181)
Q Consensus 128 a~~~~~eaie--~GIk~IV~iTtG~~~e 153 (181)
....+..+.. .+...++..+.+....
T Consensus 97 ~~~~~~~~~~~~~~~~~iv~~~~~~~~~ 124 (155)
T 2g1u_A 97 TNFFISMNARYMFNVENVIARVYDPEKI 124 (155)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECSSGGGH
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence 7666666554 5777788767665443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=51.80 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=61.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCeEE--cCc-ccc-----ccHHHHhhccCCcEEEEeeCh---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH--LGL-PVF-----NSVAEAKAETKANASVIYVPP--- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~ei--~Gv-PVy-----~sl~e~~~~~~~DVaIdfVPp--- 125 (181)
.++|+|.|++|.+|+.+++.+.+.|.+|++.. ++.+. .++ .++ .++ .++.+..+ ++|++|.....
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~--~~D~vi~~ag~~~~ 97 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG-PELRERGASDIVVANLEEDFSHAFA--SIDAVVFAAGSGPH 97 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHTTCSEEEECCTTSCCGGGGT--TCSEEEECCCCCTT
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH-HHHHhCCCceEEEcccHHHHHHHHc--CCCEEEECCCCCCC
Confidence 46799999999999999999999999988643 22211 000 122 222 44555555 79999988753
Q ss_pred -----------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -----------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -----------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
..+..+++.|.+.|++.+|.+++
T Consensus 98 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 131 (236)
T 3e8x_A 98 TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS 131 (236)
T ss_dssp SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence 23567888888899998887664
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00029 Score=60.51 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-HH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-EA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~-ea 135 (181)
.++|.|+|+ |+||+.+.+.+...|++++ +.|+.....+ + .+.+++++.+ ++|++++.+|... ...++. +.
T Consensus 144 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~---~-~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~~ 215 (311)
T 2cuk_A 144 GLTLGLVGM-GRIGQAVAKRALAFGMRVV-YHARTPKPLP---Y-PFLSLEELLK--EADVVSLHTPLTPETHRLLNRER 215 (311)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSS---S-CBCCHHHHHH--HCSEEEECCCCCTTTTTCBCHHH
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHCCCEEE-EECCCCcccc---c-ccCCHHHHHh--hCCEEEEeCCCChHHHhhcCHHH
Confidence 357999999 9999999999999999976 5676543222 3 2668999887 7999999999873 333332 22
Q ss_pred HHc-CC-CEEEEeCCCCCHHHHHHHHHHhh
Q 030220 136 MEA-EL-DLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 136 ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak 163 (181)
++. +- ..+++++.| +.-|...|.++.+
T Consensus 216 l~~mk~ga~lin~srg-~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 216 LFAMKRGAILLNTARG-ALVDTEALVEALR 244 (311)
T ss_dssp HTTSCTTCEEEECSCG-GGBCHHHHHHHHT
T ss_pred HhhCCCCcEEEECCCC-CccCHHHHHHHHh
Confidence 222 11 246775665 4444455555554
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00046 Score=58.43 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=64.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC------CeEEc----------CccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEHL----------GLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~------G~ei~----------GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|+|+ |.||......+.+.|.+|. .+++... |-.+. .+.++.+.+++.+ ++|++|++
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~DlVila 78 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGHCVS-VVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPDCTLLC 78 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTCEEE-EECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCSEEEEC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC--CCCEEEEe
Confidence 68999999 9999999998888888766 3443321 10111 2445667777654 79999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHH
Q 030220 123 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQH 153 (181)
Q Consensus 123 VPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~e 153 (181)
||+....++++.+... + =..||.++-|+..+
T Consensus 79 vK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 79 IKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE 111 (320)
T ss_dssp CCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred cCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence 9999988888776543 1 13577779999744
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00022 Score=62.45 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~-~ 133 (181)
.++|.|+|+ |+||+.+.+.+...|++|+ +.||..... ...|+..+.+++|+.+ ++|++++.+|.. ....++ +
T Consensus 168 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~ 243 (347)
T 1mx3_A 168 GETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLIND 243 (347)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTCTTSBSH
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhHhhcCCeecCCHHHHHh--cCCEEEEcCCCCHHHHHHhHH
Confidence 357999999 9999999999999999977 466553211 1135555668999988 799999999975 333333 3
Q ss_pred HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.++. +-. .+|+++.|=.+ |...|.++.+.
T Consensus 244 ~~l~~mk~gailIN~arg~~v-d~~aL~~aL~~ 275 (347)
T 1mx3_A 244 FTVKQMRQGAFLVNTARGGLV-DEKALAQALKE 275 (347)
T ss_dssp HHHTTSCTTEEEEECSCTTSB-CHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECCCChHH-hHHHHHHHHHh
Confidence 33332 222 46776666433 44445554443
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00052 Score=61.38 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=62.6
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhC--C------eE-eeecCCCCCCe----------E----E------cCccccc
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYG--T------KM-VGGVTPKKGGT----------E----H------LGLPVFN 105 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g--~------~I-VagVdP~~~G~----------e----i------~GvPVy~ 105 (181)
.++..||.|+|+ |.+|+++++.+.+.| . +| ...-++...++ + + ..+.+.+
T Consensus 31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~ 109 (391)
T 4fgw_A 31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANP 109 (391)
T ss_dssp --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEES
T ss_pred cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeC
Confidence 455579999999 999999998777642 1 11 12222221110 0 1 2456677
Q ss_pred cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc---CCCEEEEeCCCCC
Q 030220 106 SVAEAKAETKANASVIYVPPPFAAAAIMEAMEA---ELDLVVCITEGIP 151 (181)
Q Consensus 106 sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~---GIk~IV~iTtG~~ 151 (181)
+++++++ ++|++|+.||..+..++++++... +.+.|. .|-||-
T Consensus 110 dl~~al~--~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~-~~KGie 155 (391)
T 4fgw_A 110 DLIDSVK--DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAIS-CLKGFE 155 (391)
T ss_dssp CHHHHHT--TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEE-CCCSCE
T ss_pred CHHHHHh--cCCEEEEECChhhhHHHHHHhccccCCCceeEE-eccccc
Confidence 8999988 899999999999999999988643 444444 488884
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0032 Score=45.35 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCcccc-c---cHHHHhh--ccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVF-N---SVAEAKA--ETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy-~---sl~e~~~--~~~~DVaIdfVPp~~a 128 (181)
++|+|+|+ |.+|+.+++.+.+.|.+++ .+|+.... ..+ .|++++ . +.+.+.+ -.++|++++++|....
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 82 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV 82 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH
Confidence 68999999 9999999999998898866 34443211 011 144432 2 2222211 1279999999998766
Q ss_pred HHHH-HHHHHcCCCEEEEeCCCCCHHH
Q 030220 129 AAAI-MEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 129 ~~~~-~eaie~GIk~IV~iTtG~~~ed 154 (181)
...+ +.+-+.+.+.++..+.+...++
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~~~~~ 109 (140)
T 1lss_A 83 NLMSSLLAKSYGINKTIARISEIEYKD 109 (140)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSTTHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCHhHHH
Confidence 5544 4444567777777677655443
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00068 Score=59.40 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=64.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCC-------------CCCe----------E--EcC--ccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPK-------------KGGT----------E--HLG--LPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~-------------~~G~----------e--i~G--vPVy~--s 106 (181)
.||.|.|+ |+.|+.+.+.+.+. ++++|+..|+. ..|+ . +.| ++++. +
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred eEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 58999999 99999999988775 58998765431 1110 1 123 45654 4
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++. .+.++|+++.++|.....+.+...+++|.+.||+
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI 121 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 56653 2237999999999999999999999999998887
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00083 Score=55.15 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCcccc------------ccHHHHhhc-cCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF------------NSVAEAKAE-TKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy------------~sl~e~~~~-~~~DVaId 121 (181)
++||.|+|+ |.||+.....+.+.|.++. .+|+.... +.+ .|+.+. .+.+++.+. .++|++++
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVT-LIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 368999999 9999999999988888866 34443210 000 122111 022232211 16899999
Q ss_pred eeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCH
Q 030220 122 YVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQ 152 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~ 152 (181)
++|+....++++++... + =+.|+.++.|++.
T Consensus 81 ~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 81 LTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp CSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred EeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 99999988888776543 1 2356777889975
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0004 Score=59.99 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=62.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc---ccHHHHhhccCCcEEEEeeChH-HHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF---NSVAEAKAETKANASVIYVPPP-FAAAAI- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy---~sl~e~~~~~~~DVaIdfVPp~-~a~~~~- 132 (181)
.++|.|+|+ |++|+.+.+.+...|++|++ .|+.... ..++.-+ .+++|+.+ ++|++++.+|.. .....+
T Consensus 139 g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~-~dr~~~~--~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~ 212 (315)
T 3pp8_A 139 EFSVGIMGA-GVLGAKVAESLQAWGFPLRC-WSRSRKS--WPGVESYVGREELRAFLN--QTRVLINLLPNTAQTVGIIN 212 (315)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCCEEE-EESSCCC--CTTCEEEESHHHHHHHHH--TCSEEEECCCCCGGGTTCBS
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEEE-EcCCchh--hhhhhhhcccCCHHHHHh--hCCEEEEecCCchhhhhhcc
Confidence 457999999 99999999999999999874 4443211 2233222 57899988 899999999943 444444
Q ss_pred HHHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhh
Q 030220 133 MEAMEA-ELD-LVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 133 ~eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak 163 (181)
++.++. +-. .+|+++.|=. -|...|.++.+
T Consensus 213 ~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL~ 244 (315)
T 3pp8_A 213 SELLDQLPDGAYVLNLARGVH-VQEADLLAALD 244 (315)
T ss_dssp HHHHTTSCTTEEEEECSCGGG-BCHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEECCCChh-hhHHHHHHHHH
Confidence 233332 222 3566444433 34444444443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=61.00 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=59.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC-CCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-KKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP-~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~ 133 (181)
.++|.|+|+ |+||+.+++.+...|++|+ ++|+ ...... -.|+...++++|+.+ ++|++++.+|... ...++.
T Consensus 146 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~~p~~~~t~~~i~ 221 (320)
T 1gdh_A 146 NKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPSTPETRYFFN 221 (320)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTTTTCBS
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcChhhhhhcCcEEcCCHHHHHh--hCCEEEEeccCchHHHhhcC
Confidence 357999999 9999999999998999977 6676 542211 135655558999887 7999999999642 333332
Q ss_pred -HHHHc-CC-CEEEEeCCC
Q 030220 134 -EAMEA-EL-DLVVCITEG 149 (181)
Q Consensus 134 -eaie~-GI-k~IV~iTtG 149 (181)
+.++. +- ..+++++.|
T Consensus 222 ~~~l~~mk~gailIn~arg 240 (320)
T 1gdh_A 222 KATIKSLPQGAIVVNTARG 240 (320)
T ss_dssp HHHHTTSCTTEEEEECSCG
T ss_pred HHHHhhCCCCcEEEECCCC
Confidence 22222 22 236776666
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=58.75 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=61.2
Q ss_pred ceEEEEccCCCCcchhhH-HHHHhC---CeEeeecCCCCCCeEE---cC--ccccc--cHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTE-QAIEYG---TKMVGGVTPKKGGTEH---LG--LPVFN--SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k-~~~~~g---~~IVagVdP~~~G~ei---~G--vPVy~--sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||.|+|+||--|++..+ .+.+.. .+++..-... .|+.+ .| +++.+ +.++ .+ ++|+++.++|...
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~-~~--~~Dvvf~a~~~~~ 76 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIES-LK--QLDAVITCQGGSY 76 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHH-HT--TCSEEEECSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhH-hc--cCCEEEECCChHH
Confidence 479999999999999999 666654 4666554444 45443 22 23332 2233 34 7999999999999
Q ss_pred HHHHHHHHHHcCCC-EEEEeCC
Q 030220 128 AAAAIMEAMEAELD-LVVCITE 148 (181)
Q Consensus 128 a~~~~~eaie~GIk-~IV~iTt 148 (181)
+.+.+..++++|.+ .||-.+.
T Consensus 77 s~~~~~~~~~~G~k~~VID~ss 98 (370)
T 3pzr_A 77 TEKVYPALRQAGWKGYWIDAAS 98 (370)
T ss_dssp HHHHHHHHHHTTCCCEEEECSS
T ss_pred HHHHHHHHHHCCCCEEEEeCCc
Confidence 99999999999995 5555443
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0025 Score=52.98 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeE-E-cCccccccHHHHhhccCCcEEEEeeCh--------
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE-H-LGLPVFNSVAEAKAETKANASVIYVPP-------- 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~e-i-~GvPVy~sl~e~~~~~~~DVaIdfVPp-------- 125 (181)
+.++|+|.|++|-+|+.+++.+.+.|.+|++... +...+-+ + .++.=..+++++++ ++|++|-+...
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~~~~~~~ 95 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMSWAPADR 95 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCCSSGGGH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccCcchhhH
Confidence 3467999999999999999999999999886533 3221111 1 12222224666666 89999876532
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 --------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 --------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 96 ~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 96 DRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 23566788888899988877665
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0002 Score=59.32 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=60.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-----C-CeEeeecCCCCCCeEE---cCcccc--------------ccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-----G-TKMVGGVTPKKGGTEH---LGLPVF--------------NSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-----g-~~IVagVdP~~~G~ei---~GvPVy--------------~sl~e~~~~~ 114 (181)
++||.|+|+ |.||......+.+. | .+|. .+++...-+.+ .|+.+. ++.+ ..+
T Consensus 8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-- 82 (317)
T 2qyt_A 8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-EVG-- 82 (317)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHH-HHC--
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCcc-ccC--
Confidence 368999999 99999999988887 8 7766 44442100000 233332 3333 344
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHc-C-CCEEEEeCCCCCHH
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEA-E-LDLVVCITEGIPQH 153 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~~e 153 (181)
++|+++++||+....+++++.... + =..||.++.|+..+
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~ 123 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA 123 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH
Confidence 789999999999998888766443 1 12466668998764
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00075 Score=59.24 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC---eEeeecCCCCCCeEEc--C--ccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--G--LPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~---~IVagVdP~~~G~ei~--G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
+||.|+|+||--|+...+.+.+.+| +++...+....|+.+. | +.+.+.-.+..+ ++|+++.++|...+.+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPS--GLDIALFSAGSAMSKVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCT--TCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhc--cCCEEEECCChHHHHHH
Confidence 5899999999999999998888644 4565555666665442 2 222211111123 79999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCC
Q 030220 132 IMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~ 150 (181)
+..++++|++.|-+ +.-|
T Consensus 80 a~~~~~~G~~vID~-Sa~~ 97 (344)
T 3tz6_A 80 APRFAAAGVTVIDN-SSAW 97 (344)
T ss_dssp HHHHHHTTCEEEEC-SSTT
T ss_pred HHHHHhCCCEEEEC-CCcc
Confidence 99999999976655 5433
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00084 Score=59.95 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=64.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCC-------------CCCCe------------EEcC--ccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-------------KKGGT------------EHLG--LPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP-------------~~~G~------------ei~G--vPVy~--s 106 (181)
.||.|.|+ |+.|+.+++.+.+. +++||+..|. ...|+ .+.| ++++. +
T Consensus 3 ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred cEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 58999999 99999999988774 5899976553 11110 1233 45554 4
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+++. .+.++|+++.+++.....+.+...+++|.+.||+
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVI 121 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 55553 1237999999999999999999999999999887
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0024 Score=52.37 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh------------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP------------ 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp------------ 125 (181)
.++|+|.|++|..|+.+++.+.+.|.++++. +....+ ++-=..++++++++.++|++|.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~----D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~ 77 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVL-RTRDEL----NLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPA 77 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEC-CCTTTC----CTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE-ecCccC----CccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHH
Confidence 3689999999999999999999999988764 332212 22222356676665579999987532
Q ss_pred -------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 78 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 78 DFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 23446677888889988776664
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00066 Score=59.44 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=64.3
Q ss_pred ceEEEEccCCCCcchhhHHHHH---h-CCeEeeecCC-------------CCCC----------eE--EcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIE---Y-GTKMVGGVTP-------------KKGG----------TE--HLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~---~-g~~IVagVdP-------------~~~G----------~e--i~G--vPVy~-- 105 (181)
.||.|.|+ |+.|+.+.+.+.+ . ++++|+..+. ...| .. +.| ++++.
T Consensus 3 ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 3 VRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 58999999 9999999999887 5 8999976553 0000 00 122 45663
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.++++ ++.++|+++.++|.....+.+...+++|.+.||+
T Consensus 82 dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI 122 (339)
T 2x5j_O 82 SLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLF 122 (339)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEE
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEE
Confidence 455542 2237999999999999999999999999998877
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00047 Score=60.30 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=65.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCC-------------CCCCe----------E--Ec--Cccccc--cH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-------------KKGGT----------E--HL--GLPVFN--SV 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP-------------~~~G~----------e--i~--GvPVy~--sl 107 (181)
+.||.|.|+ |+.|+.+.+.+.+. +++||+..+. ...|. . +. .++++. +.
T Consensus 1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (334)
T 3cmc_O 1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (334)
T ss_dssp CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence 368999999 99999999998885 8999976554 11121 0 12 255663 45
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++ ++.++|+++.++|.....+.+...+++|.|.+|+
T Consensus 80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI 118 (334)
T 3cmc_O 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118 (334)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence 5542 2347999999999999999999999999998776
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=57.00 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=65.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH-HHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~-~eai 136 (181)
.+|.|+|+ |++|+.+++.+...|++++ +.|+..... ....--|.+++++.+ ++|++++.+|.... ..++ ++.+
T Consensus 146 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~-~~~~~~~~~l~ell~--~aDvV~~~~P~~~~t~~li~~~~l 220 (333)
T 1dxy_A 146 QTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPMKG-DHPDFDYVSLEDLFK--QSDVIDLHVPGIEQNTHIINEAAF 220 (333)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSS-CCTTCEECCHHHHHH--HCSEEEECCCCCGGGTTSBCHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcchh-hHhccccCCHHHHHh--cCCEEEEcCCCchhHHHHhCHHHH
Confidence 56999999 9999999999999999977 566544221 111223558999887 79999999997542 2222 1122
Q ss_pred Hc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 137 EA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 137 e~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+. +-. .+|+.+.| +.-|...|.++.+.--+
T Consensus 221 ~~mk~ga~lIn~srg-~~vd~~aL~~aL~~g~i 252 (333)
T 1dxy_A 221 NLMKPGAIVINTARP-NLIDTQAMLSNLKSGKL 252 (333)
T ss_dssp HHSCTTEEEEECSCT-TSBCHHHHHHHHHTTSE
T ss_pred hhCCCCcEEEECCCC-cccCHHHHHHHHHhCCc
Confidence 22 222 45665665 44455566666554333
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00036 Score=60.37 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~-- 132 (181)
.++|.|+|+ |+||+.+.+.+...|++++ +.|+...... -.|+.. .+++++++ ++|++++.+|.. ....++
T Consensus 146 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~e~l~--~aDiVil~vp~~~~t~~~i~~ 220 (333)
T 2d0i_A 146 GKKVGILGM-GAIGKAIARRLIPFGVKLY-YWSRHRKVNVEKELKARY-MDIDELLE--KSDIVILALPLTRDTYHIINE 220 (333)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCHHHHHHHTEEE-CCHHHHHH--HCSEEEECCCCCTTTTTSBCH
T ss_pred cCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCcee-cCHHHHHh--hCCEEEEcCCCChHHHHHhCH
Confidence 357999999 9999999999999999976 5665542111 124443 47888887 799999999997 333322
Q ss_pred --HHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 133 --MEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 133 --~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
...++.| .+++.+.|-...+ ..|.++.
T Consensus 221 ~~~~~mk~g--ilin~srg~~vd~-~aL~~aL 249 (333)
T 2d0i_A 221 ERVKKLEGK--YLVNIGRGALVDE-KAVTEAI 249 (333)
T ss_dssp HHHHHTBTC--EEEECSCGGGBCH-HHHHHHH
T ss_pred HHHhhCCCC--EEEECCCCcccCH-HHHHHHH
Confidence 2344556 7788666654443 3344443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0033 Score=45.40 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=57.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCccc-cc---cHHHHhh--ccCCcEEEEeeCh--H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPV-FN---SVAEAKA--ETKANASVIYVPP--P 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPV-y~---sl~e~~~--~~~~DVaIdfVPp--~ 126 (181)
+.+|+|+|+ |.+|+.+++.+.+.|.+++. +|+.... ... .|..+ +. +.+.+.+ -.++|+++.+++. +
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~-~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLA-VDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEE-EESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 457999999 99999999999998888663 3322100 000 12222 22 2222211 1269999999996 3
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
....+++.+.+.|++.++..+.+-
T Consensus 84 ~~~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 84 ASTLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCH
Confidence 445677777788988877756553
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00062 Score=52.50 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=58.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE--cCcccc-c---cHHHHhh---ccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH--LGLPVF-N---SVAEAKA---ETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei--~GvPVy-~---sl~e~~~---~~~~DVaIdfVPp~ 126 (181)
..+|+|+|+ |++|+.+++.+.+. |.++++ +|.+... .+. .|+.++ . +.+.+.+ -.++|++|+++|..
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~v-id~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~ 116 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGKISLG-IEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH 116 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCSCEEE-EESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCCeEEE-EECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence 457999998 99999999999998 998773 4433211 011 255433 2 2221111 12689999999965
Q ss_pred HHH-HHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHH
Q 030220 127 FAA-AAIMEAMEAE-LDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 127 ~a~-~~~~eaie~G-Ik~IV~iTtG~~~ed~~~l~~~ 161 (181)
... .++..+-+.+ ...|+..+. ..+....+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~ii~~~~--~~~~~~~l~~~ 151 (183)
T 3c85_A 117 QGNQTALEQLQRRNYKGQIAAIAE--YPDQLEGLLES 151 (183)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEES--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHc
Confidence 544 4445555556 445555343 34444555444
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=52.92 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=60.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC------------------CeEE--cCccccccHHHHhhccCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------------------GTEH--LGLPVFNSVAEAKAETKA 116 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~------------------G~ei--~GvPVy~sl~e~~~~~~~ 116 (181)
.+++|+|.|++|-.|+.+++.+.+.|.+|++....... +-++ .++.=..+++++++ ++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 101 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV 101 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence 35789999999999999999999999998865432111 1011 11211224566666 89
Q ss_pred cEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 117 NASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 117 DVaIdfVPp------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
|++|.+... .....+++.|.++|++.+|.++
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~S 150 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAA 150 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 999988642 1234578888889998877655
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00089 Score=59.74 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=66.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~eai 136 (181)
+++.|+|. |++|+.+++.+...|++++ +.||.... ...++..+.+++|+.+ ++|++++.+|... ...++ ++.+
T Consensus 146 ktlGiIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l 220 (404)
T 1sc6_A 146 KKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENKL-PLGNATQVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAKEI 220 (404)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCC-CCTTCEECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHHHH
T ss_pred CEEEEEeE-CHHHHHHHHHHHHCCCEEE-EEcCCchh-ccCCceecCCHHHHHh--cCCEEEEccCCChHHHHHhhHHHH
Confidence 57999999 9999999999999999987 56765422 2233555668999988 7999999999863 33232 1222
Q ss_pred Hc-CCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 137 EA-ELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 137 e~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+. +-. .+++++.|=. -|...|.++.+.
T Consensus 221 ~~mk~ga~lIN~aRg~~-vd~~aL~~aL~~ 249 (404)
T 1sc6_A 221 SLMKPGSLLINASRGTV-VDIPALADALAS 249 (404)
T ss_dssp HHSCTTEEEEECSCSSS-BCHHHHHHHHHT
T ss_pred hhcCCCeEEEECCCChH-HhHHHHHHHHHc
Confidence 22 222 3667566643 344455555443
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00079 Score=58.74 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=66.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----------------E---------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----------------e---------i~G--vPVy~--sl~ 108 (181)
.||.|.|+ |+.|+.+.+.+.+. +++||+..+....+. + +.| ++++. +.+
T Consensus 2 ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (330)
T 1gad_O 2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 80 (330)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence 58999997 99999999988874 899998655321110 0 111 23454 345
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCC
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~ 150 (181)
+++ ...++|+++.++|.....+.+...+++|.+.|++ +..+
T Consensus 81 ~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdl-Sa~~ 122 (330)
T 1gad_O 81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM-TGPS 122 (330)
T ss_dssp GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SSCC
T ss_pred hCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEE-CCCC
Confidence 542 1237999999999999999999999999999988 7666
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00053 Score=60.49 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=63.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCcc------------------ccccHHHHhhccCCc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLP------------------VFNSVAEAKAETKAN 117 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvP------------------Vy~sl~e~~~~~~~D 117 (181)
+||.|+|+ |.||......+.+ |.+++ ++|....- ..+ .+.| ...++++..+ ++|
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--~aD 75 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QNEVT-IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EAE 75 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HCS
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--CCC
Confidence 47999999 9999999998888 98876 44443210 011 1333 3345666666 689
Q ss_pred EEEEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhh
Q 030220 118 ASVIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 118 VaIdfVPp~-----------~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+++++||+. .+.++++.....+-..+|+.....+.....++.+...
T Consensus 76 vviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~ 132 (402)
T 1dlj_A 76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQ 132 (402)
T ss_dssp EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTT
T ss_pred EEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhC
Confidence 999999997 5788777665533334444323344444555555543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0009 Score=58.66 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-EcCccccccHHHHhhccCCcEEEEeeCh-HHHHHHH-HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI-MEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-i~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~-~ea 135 (181)
++|.|+|. |++|+.+.+.+...|++|+ +.||.....+ ..|....++++|+.+ ++|++++.+|- +.....+ ++.
T Consensus 174 ktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 174 RRLGIFGM-GRIGRAIATRARGFGLAIH-YHNRTRLSHALEEGAIYHDTLDSLLG--ASDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp CEEEEESC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHTTCEECSSHHHHHH--TCSEEEECSCCCGGGTTCBCHHH
T ss_pred CEEEEEEe-ChhHHHHHHHHHHCCCEEE-EECCCCcchhhhcCCeEeCCHHHHHh--hCCEEEEecCCCHHHHHHhCHHH
Confidence 57999999 9999999999999999987 5676542211 125555579999998 89999999994 3333333 222
Q ss_pred HH-cCCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 136 ME-AELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 136 ie-~GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++ .+-. .+|+++.| +.-|...|.++.+.-.+
T Consensus 250 l~~mk~gailIN~aRG-~~vde~aL~~aL~~g~i 282 (345)
T 4g2n_A 250 IAKIPEGAVVINISRG-DLINDDALIEALRSKHL 282 (345)
T ss_dssp HHHSCTTEEEEECSCG-GGBCHHHHHHHHHHTSE
T ss_pred HhhCCCCcEEEECCCC-chhCHHHHHHHHHhCCc
Confidence 22 2333 35664444 44445555555544333
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00086 Score=58.67 Aligned_cols=86 Identities=13% Similarity=-0.037 Sum_probs=64.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCC-------------CCCC----------eEE--c--Cccccc--cHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-------------KKGG----------TEH--L--GLPVFN--SVAE 109 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP-------------~~~G----------~ei--~--GvPVy~--sl~e 109 (181)
.||.|.|+ |+.|+.+.+.+.+.++++++..|. ...| +.+ . .++|+. +.++
T Consensus 1 ikVgInG~-G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~ 79 (331)
T 2g82_O 1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE 79 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhh
Confidence 37999999 999999999887779999975443 1112 111 2 356663 4554
Q ss_pred Hh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 110 AK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 110 ~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+. ++.++|+++.++|.....+.+...+++|.|.||+
T Consensus 80 l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVI 116 (331)
T 2g82_O 80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116 (331)
T ss_dssp SCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred CcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence 43 2347899999999999999999999999999887
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0009 Score=61.52 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=62.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHh-CC---eEeeecCCCCCCeEE---cCc-----cccc-cH----HHHhhccC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEY-GT---KMVGGVTPKKGGTEH---LGL-----PVFN-SV----AEAKAETK 115 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~-g~---~IVagVdP~~~G~ei---~Gv-----PVy~-sl----~e~~~~~~ 115 (181)
..++...||+|+|+ |.+|+.+++.+.+. ++ +|+ .+||.+.+.++ .|+ .|-. ++ +++++ +
T Consensus 8 ~~~~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~--~ 83 (480)
T 2ph5_A 8 KKILFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLE--E 83 (480)
T ss_dssp TCBCCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCC--T
T ss_pred ceecCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhc--C
Confidence 45566789999998 99999999988874 66 343 45666544221 233 3323 33 34444 3
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEE
Q 030220 116 ANASVIYVPPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 116 ~DVaIdfVPp~~a~~~~~eaie~GIk~I 143 (181)
.|++|...++.....+++.|+++|+.-+
T Consensus 84 ~DvVIN~s~~~~~l~Im~acleaGv~Yl 111 (480)
T 2ph5_A 84 NDFLIDVSIGISSLALIILCNQKGALYI 111 (480)
T ss_dssp TCEEEECCSSSCHHHHHHHHHHHTCEEE
T ss_pred CCEEEECCccccCHHHHHHHHHcCCCEE
Confidence 5999999999999999999999999765
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0016 Score=57.85 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCcchhhH-HHHHhC---CeEeeecCCCCCCeEE---cC--ccccc--cHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTE-QAIEYG---TKMVGGVTPKKGGTEH---LG--LPVFN--SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k-~~~~~g---~~IVagVdP~~~G~ei---~G--vPVy~--sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||.|+|+||--|++..+ .+.+.. .+++..-.. ..|+.+ .| +++.+ +.++ .+ ++|+++.++|...
T Consensus 5 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~~~~v~~~~~~~~-~~--~vDvvf~a~~~~~ 80 (377)
T 3uw3_A 5 MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKNETTLKDATSIDD-LK--KCDVIITCQGGDY 80 (377)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCSCCBCEETTCHHH-HH--TCSEEEECSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCCceEEEeCCChhH-hc--CCCEEEECCChHH
Confidence 689999999999999999 666654 566654444 344433 22 23332 2233 34 7999999999999
Q ss_pred HHHHHHHHHHcCCC-EEEEeCC
Q 030220 128 AAAAIMEAMEAELD-LVVCITE 148 (181)
Q Consensus 128 a~~~~~eaie~GIk-~IV~iTt 148 (181)
+.+.+..++++|++ .||-.+.
T Consensus 81 s~~~~~~~~~~G~k~~VID~ss 102 (377)
T 3uw3_A 81 TNDVFPKLRAAGWNGYWIDAAS 102 (377)
T ss_dssp HHHHHHHHHHTTCCSEEEECSS
T ss_pred HHHHHHHHHHCCCCEEEEeCCc
Confidence 99999999999995 5555444
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0087 Score=47.07 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeee-cCCCCCCe----EE----cCccccccHHHHhhccCCcEEEEeeCh-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGG-VTPKKGGT----EH----LGLPVFNSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVag-VdP~~~G~----ei----~GvPVy~sl~e~~~~~~~DVaIdfVPp- 125 (181)
.++|+|.|++|.+|+.+++.+.+.|. +|++. -++..... .+ .++.=..+++++++ ++|++|.+...
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag~~ 95 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGTT 95 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCCcc
Confidence 36799999999999999999999998 87754 23332110 00 11211224555555 79999988653
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 --------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 --------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
..+..+++.+.+.|++.||.+++
T Consensus 96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 23556777788889988887774
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0041 Score=51.17 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC-CCCCeEEc-Cccc-------cccHHHHhhccCCcEEEEeeCh---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-KKGGTEHL-GLPV-------FNSVAEAKAETKANASVIYVPP--- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP-~~~G~ei~-GvPV-------y~sl~e~~~~~~~DVaIdfVPp--- 125 (181)
+++|+|.|++|..|+.+++.+.+.|.+|++.... ......+. ++.+ ..++++++++.++|++|.+...
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~ 80 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLV 80 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCc
Confidence 3679999999999999999999999998864321 11000110 1211 1235566654478999887532
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 81 GVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 13456677777889988777664
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0028 Score=49.28 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE--cCccccc-cHH----HHhhccCCcEEEEeeCh-----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPVFN-SVA----EAKAETKANASVIYVPP----- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei--~GvPVy~-sl~----e~~~~~~~DVaIdfVPp----- 125 (181)
+||+|.|+||..|+.+++.+.+.|.+|++..- +.+. .+. .++.++. ++. +..+ ++|++|.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~ 77 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-ADRLGATVATLVKEPLVLTEADLD--SVDAVVDALSVPWGSG 77 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHTCTTSEEEECCGGGCCHHHHT--TCSEEEECCCCCTTSS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-ccccCCCceEEecccccccHhhcc--cCCEEEECCccCCCcc
Confidence 47999999999999999999999999886432 1110 000 1222221 221 3444 79999988743
Q ss_pred ------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 ------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 ------~~a~~~~~eaie~GIk~IV~iT 147 (181)
..+..+++.|.++| +.+|.++
T Consensus 78 ~~~~n~~~~~~l~~a~~~~~-~~~v~~S 104 (224)
T 3h2s_A 78 RGYLHLDFATHLVSLLRNSD-TLAVFIL 104 (224)
T ss_dssp CTHHHHHHHHHHHHTCTTCC-CEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHcC-CcEEEEe
Confidence 45667777777889 6666655
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=52.53 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=58.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCcccc-------ccHHHHhhccCCcEEEEeeCh------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NSVAEAKAETKANASVIYVPP------ 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp------ 125 (181)
++|+|.|++|.+|+.+++.+.+.|.+|++. +.........++.++ .++.++++ ++|++|.+...
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~~~~ 79 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLS-DIVDLGAAEAHEEIVACDLADAQAVHDLVK--DCDGIIHLGGVSVERPW 79 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEEC-CSSCCCCCCTTEEECCCCTTCHHHHHHHHT--TCSEEEECCSCCSCCCH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEE-eCCCccccCCCccEEEccCCCHHHHHHHHc--CCCEEEECCcCCCCCCH
Confidence 479999999999999999999988887754 322111000122222 23556665 79999987432
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 --------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 --------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 80 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 110 (267)
T 3ay3_A 80 NDILQANIIGAYNLYEAARNLGKPRIVFASS 110 (267)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 23467778888889988877664
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0015 Score=57.34 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=66.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCC-------------CCC-----------CeE--EcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-------------KKG-----------GTE--HLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP-------------~~~-----------G~e--i~G--vPVy~-- 105 (181)
.||.|.|+ |+.|+.+.+.+.+. +++||+..|. ... +.. +.| ++++.
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 58999999 99999999988775 6788875532 111 111 233 34454
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
+.+++. ++.++|+++.++|.....+.+...+++|.+.|++ +.-+.
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~i-Sap~r 126 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI-TAPGK 126 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE-SSCCB
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEE-CCccc
Confidence 344432 2347999999999999999999999999999998 76554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=60.51 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~ 132 (181)
..+|.|+|+ |+||+.+++.+...|++ |+ +.|+.....+ -.|+..+.+++++.+ ++|++++.+|.. ....++
T Consensus 164 g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li 239 (364)
T 2j6i_A 164 GKTIATIGA-GRIGYRVLERLVPFNPKELL-YYDYQALPKDAEEKVGARRVENIEELVA--QADIVTVNAPLHAGTKGLI 239 (364)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGCCSEEE-EECSSCCCHHHHHHTTEEECSSHHHHHH--TCSEEEECCCCSTTTTTCB
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCcEEE-EECCCccchhHHHhcCcEecCCHHHHHh--cCCEEEECCCCChHHHHHh
Confidence 357999999 99999999999999997 76 5665432111 135555568999988 899999999985 222333
Q ss_pred H-HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 M-EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 ~-eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
. +.++. +-. .+|+++.| +.-|...|.++.+.
T Consensus 240 ~~~~l~~mk~ga~lIn~arG-~~vd~~aL~~aL~~ 273 (364)
T 2j6i_A 240 NKELLSKFKKGAWLVNTARG-AICVAEDVAAALES 273 (364)
T ss_dssp CHHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCEEEECCCC-chhCHHHHHHHHHc
Confidence 2 22222 222 36775666 33344445555443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00067 Score=60.56 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=65.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~- 132 (181)
.++|.|+|+ |+||+.+.+.+...|++|+ +.|+.....+ -.|+..+.+++++++ ++|++++.+|.. ....++
T Consensus 191 gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~~~~~~~~~~G~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li~ 266 (393)
T 2nac_A 191 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLHPETEHMIN 266 (393)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCCTTTTTCBS
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EEcCCccchhhHhhcCceecCCHHHHHh--cCCEEEEecCCchHHHHHhh
Confidence 357999999 9999999999999999977 5666532211 136666678999988 799999999953 223333
Q ss_pred HHHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhh
Q 030220 133 MEAMEA-ELD-LVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 133 ~eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak 163 (181)
++.++. +-. .+|+++.| ..-|...|.++.+
T Consensus 267 ~~~l~~mk~gailIN~aRG-~~vde~aL~~aL~ 298 (393)
T 2nac_A 267 DETLKLFKRGAYIVNTARG-KLCDRDAVARALE 298 (393)
T ss_dssp HHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEECCCc-hHhhHHHHHHHHH
Confidence 223322 222 36775665 3334444444443
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0051 Score=49.47 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe---EeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh---------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP--------- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~---IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp--------- 125 (181)
+++|+|.|++|.+|+.+++.+.+.|.. -...+.... .++-=..+++++++..++|++|.+.-.
T Consensus 6 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~ 80 (319)
T 4b8w_A 6 SMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD-----ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIK 80 (319)
T ss_dssp CCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTT-----CCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCcee-----cccCCHHHHHHHHhhcCCCEEEECceeccccccccc
Confidence 578999999999999999999987750 000111100 112222256777775679999987432
Q ss_pred ----------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ----------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ----------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS 113 (319)
T 4b8w_A 81 YNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS 113 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 12345678888889988776553
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0018 Score=58.51 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=64.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCC--CCCeEE--c-------------------CccccccHHHHhh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPK--KGGTEH--L-------------------GLPVFNSVAEAKA 112 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~--~~G~ei--~-------------------GvPVy~sl~e~~~ 112 (181)
++||.|+|+ |.||......+.+. |.++++ +|.. +.. .+ . ++....++++..+
T Consensus 9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~-~D~~~~~v~-~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~ 85 (481)
T 2o3j_A 9 VSKVVCVGA-GYVGGPTCAMIAHKCPHITVTV-VDMNTAKIA-EWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA 85 (481)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCHHHHH-HHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCHHHHH-HHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh
Confidence 468999999 99999999888887 788774 4432 111 00 1 2333445666665
Q ss_pred ccCCcEEEEeeChH---------------HHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 113 ETKANASVIYVPPP---------------FAAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 113 ~~~~DVaIdfVPp~---------------~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++|+++++||.. .+.++++...++ .-..+|+..+.++.....++.+..++
T Consensus 86 --~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 86 --EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp --HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred --cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 689999998653 366777665554 22345554556766655555555443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0053 Score=52.41 Aligned_cols=90 Identities=14% Similarity=0.071 Sum_probs=60.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCC---------CeEE--cC-ccccccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG---------GTEH--LG-LPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~---------G~ei--~G-vPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
.++|+|.|+||.+|+.+++.+.+.|.+|++.. ++... +-++ .+ +-=..+++++++ ++|+++....
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcCC
Confidence 36799999999999999999999899988754 33221 1111 11 111113566666 7899887654
Q ss_pred h------HHHHHHHHHHHHcC-CCEEEEeCCC
Q 030220 125 P------PFAAAAIMEAMEAE-LDLVVCITEG 149 (181)
Q Consensus 125 p------~~a~~~~~eaie~G-Ik~IV~iTtG 149 (181)
. .....+++.|.++| ++.+|.+++.
T Consensus 83 ~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 83 SQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp STTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 3 24467778888889 9888776654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00063 Score=58.73 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=66.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-H
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM-E 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~-e 134 (181)
++|.|+|+ |+||+.+.+.+...|++|+ ++|+...... -.|+. +.+++++++ ++|++++.+|... ....+. +
T Consensus 151 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~~~l~--~aDvVil~vp~~~~t~~~i~~~ 225 (334)
T 2dbq_A 151 KTIGIIGL-GRIGQAIAKRAKGFNMRIL-YYSRTRKEEVERELNAE-FKPLEDLLR--ESDFVVLAVPLTRETYHLINEE 225 (334)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHCCE-ECCHHHHHH--HCSEEEECCCCCTTTTTCBCHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCEEE-EECCCcchhhHhhcCcc-cCCHHHHHh--hCCEEEECCCCChHHHHhhCHH
Confidence 57999999 9999999999999999976 5665542211 12454 358888887 7999999999876 333331 2
Q ss_pred H---HHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 A---MEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 a---ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
. ++.| ..+++.+.|-... ...|.++.+.-.+
T Consensus 226 ~~~~mk~~-ailIn~srg~~v~-~~aL~~aL~~~~i 259 (334)
T 2dbq_A 226 RLKLMKKT-AILINIARGKVVD-TNALVKALKEGWI 259 (334)
T ss_dssp HHHHSCTT-CEEEECSCGGGBC-HHHHHHHHHHTSS
T ss_pred HHhcCCCC-cEEEECCCCcccC-HHHHHHHHHhCCe
Confidence 2 2223 3567766664443 3345554444444
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0021 Score=53.42 Aligned_cols=90 Identities=9% Similarity=0.040 Sum_probs=59.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC--CeEeeecCCCC-CC--eEE------cCcccc-------ccHHHHhhccCCcE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GG--TEH------LGLPVF-------NSVAEAKAETKANA 118 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~~-~G--~ei------~GvPVy-------~sl~e~~~~~~~DV 118 (181)
++++|+|.|+||-+|+.+++.+.+.| .++++. +... .. ..+ .++.++ .+++++++..++|+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 101 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINF-DALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV 101 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEE-ECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEE-eccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence 35789999999999999999999987 666643 3211 00 000 122222 24666776556999
Q ss_pred EEEeeChH------------------HHHHHHHHHHHcCCCEEEEeC
Q 030220 119 SVIYVPPP------------------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 119 aIdfVPp~------------------~a~~~~~eaie~GIk~IV~iT 147 (181)
+|.+.... .+..+++.|.++|++.+|.++
T Consensus 102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~S 148 (346)
T 4egb_A 102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVS 148 (346)
T ss_dssp EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEE
T ss_pred EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99775321 246778888889999777655
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.004 Score=51.45 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=61.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-------------EE--cCccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-------------EH--LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-------------ei--~GvPVy~sl~e~~~~~~~DVaI 120 (181)
.+++|+|.|++|-+|+.+++.+.+.|.+|++... +..... +. .++-=..++++++++.++|++|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 3468999999999999999999999999886422 222110 00 1121122466666656799998
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 121 IYVPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 121 dfVPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-+.-. .....+++.|.+.|++.+|.+++
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 76631 23556778888889988887664
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00072 Score=59.76 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=65.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-----------------E---------Ec--Cccccc--
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-----------------E---------HL--GLPVFN-- 105 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-----------------e---------i~--GvPVy~-- 105 (181)
.+.||.|.|+ |+.|+.+.+.+.+. +++||+..||...-. + +. .++++.
T Consensus 16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 94 (354)
T 3cps_A 16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK 94 (354)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence 3579999999 99999999998885 899998776431100 0 11 234554
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.+++. .+.++|+++.++|.....+.+...+++|.|.+|+
T Consensus 95 dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVI 135 (354)
T 3cps_A 95 DPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVII 135 (354)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred ChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEE
Confidence 455442 1137999999999999999999999999998876
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0023 Score=47.14 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=59.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCcccc-ccH--HHHhh---ccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF-NSV--AEAKA---ETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy-~sl--~e~~~---~~~~DVaIdfVPp~~a 128 (181)
+.+|+|+|+ |++|+.+++.+.+.|.+++. +|..... .+. .|++++ .+. ++.++ -.++|++|.++|....
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~-id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLA-VDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF 83 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEE-EESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence 467999999 99999999999999999774 4433211 011 244332 221 22222 1268999999995443
Q ss_pred -HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 129 -AAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 -~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..++..+-+.|...|+..+.. .++...++++
T Consensus 84 n~~~~~~a~~~~~~~iia~~~~--~~~~~~l~~~ 115 (141)
T 3llv_A 84 NLKILKALRSVSDVYAIVRVSS--PKKKEEFEEA 115 (141)
T ss_dssp HHHHHHHHHHHCCCCEEEEESC--GGGHHHHHHT
T ss_pred HHHHHHHHHHhCCceEEEEEcC--hhHHHHHHHc
Confidence 445555556676666654433 3344445444
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.001 Score=58.34 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~- 132 (181)
.++|.|+|+ |++|+.+.+.+...|++|+ +.|+.....+ -.|+..+.+++|+.+ ++|++++.+|.. .....+
T Consensus 164 gktvGIIG~-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li~ 239 (351)
T 3jtm_A 164 GKTIGTVGA-GRIGKLLLQRLKPFGCNLL-YHDRLQMAPELEKETGAKFVEDLNEMLP--KCDVIVINMPLTEKTRGMFN 239 (351)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGCCEEE-EECSSCCCHHHHHHHCCEECSCHHHHGG--GCSEEEECSCCCTTTTTCBS
T ss_pred CCEEeEEEe-CHHHHHHHHHHHHCCCEEE-EeCCCccCHHHHHhCCCeEcCCHHHHHh--cCCEEEECCCCCHHHHHhhc
Confidence 357999999 9999999999999999966 5666532111 135666678999988 799999999953 222222
Q ss_pred HHHHH-cCCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 MEAME-AELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 ~eaie-~GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++.++ .+-. .+|+.+.| +.-|...|.++.+.
T Consensus 240 ~~~l~~mk~gailIN~aRG-~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 240 KELIGKLKKGVLIVNNARG-AIMERQAVVDAVES 272 (351)
T ss_dssp HHHHHHSCTTEEEEECSCG-GGBCHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECcCc-hhhCHHHHHHHHHh
Confidence 22222 2322 35664444 44444455555443
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00056 Score=59.38 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=63.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-HHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-MEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~-~ea 135 (181)
++|.|+|. |+||+.+.+.+...|++|++ .|+.... ......-.+.+++++.+ ++|++++.+|.. .....+ .+.
T Consensus 138 ktvGIiGl-G~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPlt~~t~~li~~~~ 213 (324)
T 3evt_A 138 QQLLIYGT-GQIGQSLAAKASALGMHVIG-VNTTGHPADHFHETVAFTATADALA--TANFIVNALPLTPTTHHLFSTEL 213 (324)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEE-EESSCCCCTTCSEEEEGGGCHHHHH--HCSEEEECCCCCGGGTTCBSHHH
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCEEEE-ECCCcchhHhHhhccccCCHHHHHh--hCCEEEEcCCCchHHHHhcCHHH
Confidence 57999999 99999999999999999874 5543211 01111223468899988 799999999943 333333 223
Q ss_pred HHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 136 MEA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 136 ie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
++. +- ..+|+++.|=. -|...|.++.+.-
T Consensus 214 l~~mk~gailIN~aRG~~-vd~~aL~~aL~~g 244 (324)
T 3evt_A 214 FQQTKQQPMLINIGRGPA-VDTTALMTALDHH 244 (324)
T ss_dssp HHTCCSCCEEEECSCGGG-BCHHHHHHHHHTT
T ss_pred HhcCCCCCEEEEcCCChh-hhHHHHHHHHHhC
Confidence 332 22 34677555443 3444455554433
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00065 Score=59.15 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=67.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
..+|.|+|. |++|+.+++.+...|++|+ +.||...... -.|+. +.+++++.+ ++|++++.+|... ...++ +
T Consensus 165 g~tvgIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~~ 239 (335)
T 2g76_A 165 GKTLGILGL-GRIGREVATRMQSFGMKTI-GYDPIISPEVSASFGVQ-QLPLEEIWP--LCDFITVHTPLLPSTTGLLND 239 (335)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSSCHHHHHHTTCE-ECCHHHHGG--GCSEEEECCCCCTTTTTSBCH
T ss_pred cCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-eCCHHHHHh--cCCEEEEecCCCHHHHHhhCH
Confidence 357999999 9999999999998999977 5676542211 13443 358999887 7999999999864 33333 2
Q ss_pred HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +-. .+++++.| +.-|...|.++.+.-.+
T Consensus 240 ~~l~~mk~gailIN~arg-~vvd~~aL~~aL~~g~i 274 (335)
T 2g76_A 240 NTFAQCKKGVRVVNCARG-GIVDEGALLRALQSGQC 274 (335)
T ss_dssp HHHTTSCTTEEEEECSCT-TSBCHHHHHHHHHHTSE
T ss_pred HHHhhCCCCcEEEECCCc-cccCHHHHHHHHHhCCc
Confidence 23332 222 35665555 44455555665554433
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00071 Score=58.23 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=60.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccccccHHHHhhccCCcEEEEeeChHHH-HHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNSVAEAKAETKANASVIYVPPPFA-AAAI- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-~~~~- 132 (181)
.++|.|+|+ |+||+.+.+.+...|++|+ ++|+..... . -.|+... +++++++ ++|++++.+|.... ...+
T Consensus 155 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~-~l~e~l~--~aDvVi~~vp~~~~t~~~i~ 229 (330)
T 2gcg_A 155 QSTVGIIGL-GRIGQAIARRLKPFGVQRF-LYTGRQPRPEEAAEFQAEFV-STPELAA--QSDFIVVACSLTPATEGLCN 229 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCCEE-EEESSSCCHHHHHTTTCEEC-CHHHHHH--HCSEEEECCCCCTTTTTCBS
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcchhHHHhcCceeC-CHHHHHh--hCCEEEEeCCCChHHHHhhC
Confidence 357999999 9999999999999999976 455443211 1 1244433 8888887 79999999997532 2222
Q ss_pred H---HHHHcCCCEEEEeCCC--CCHHHHHH
Q 030220 133 M---EAMEAELDLVVCITEG--IPQHDMVI 157 (181)
Q Consensus 133 ~---eaie~GIk~IV~iTtG--~~~ed~~~ 157 (181)
+ ..++.| ..+++.+.| +.++++.+
T Consensus 230 ~~~~~~mk~g-ailIn~srg~~v~~~aL~~ 258 (330)
T 2gcg_A 230 KDFFQKMKET-AVFINISRGDVVNQDDLYQ 258 (330)
T ss_dssp HHHHHHSCTT-CEEEECSCGGGBCHHHHHH
T ss_pred HHHHhcCCCC-cEEEECCCCcccCHHHHHH
Confidence 1 222223 356776666 44444443
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00066 Score=58.89 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=60.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee---cCCCCCCeEE--c--Cccccc-cHHHHhhccCCcEEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG---VTPKKGGTEH--L--GLPVFN-SVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag---VdP~~~G~ei--~--GvPVy~-sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+||+|+|++|..|+.+.+.+.+.+++++.. .+....|+.+ . .+++++ +.++ - ++|+++.++|.....+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~---~-~~DvV~~a~g~~~s~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGP---L-PVDLVLASAGGGISRA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSC---C-CCSEEEECSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhh---c-CCCEEEECCCccchHH
Confidence 479999999999999999888655553332 2222222222 2 244443 2111 1 6899999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCC
Q 030220 131 AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~ 150 (181)
.+..++++|++.|-. +.-|
T Consensus 77 ~a~~~~~~G~~vId~-s~~~ 95 (331)
T 2yv3_A 77 KALVWAEGGALVVDN-SSAW 95 (331)
T ss_dssp HHHHHHHTTCEEEEC-SSSS
T ss_pred HHHHHHHCCCEEEEC-CCcc
Confidence 999999999976665 6544
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00062 Score=58.44 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-- 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-- 132 (181)
.++|.|+|+ |+||+.+.+.+...|++++ ++|+...... -.|+.. .+++++.+ ++|++++.+|... ...++
T Consensus 142 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvVvl~~P~~~~t~~li~~ 216 (313)
T 2ekl_A 142 GKTIGIVGF-GRIGTKVGIIANAMGMKVL-AYDILDIREKAEKINAKA-VSLEELLK--NSDVISLHVTVSKDAKPIIDY 216 (313)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCCTTSCCSBCH
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCcchhHHHhcCcee-cCHHHHHh--hCCEEEEeccCChHHHHhhCH
Confidence 357999999 9999999999999999977 5666542210 135443 48889887 7999999999543 22122
Q ss_pred --HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 --MEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 --~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
...++.| ..+++++.| +.-|...|.++.+.
T Consensus 217 ~~l~~mk~g-a~lIn~arg-~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 217 PQFELMKDN-VIIVNTSRA-VAVNGKALLDYIKK 248 (313)
T ss_dssp HHHHHSCTT-EEEEESSCG-GGBCHHHHHHHHHT
T ss_pred HHHhcCCCC-CEEEECCCC-cccCHHHHHHHHHc
Confidence 1222222 246665565 44555556665544
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0049 Score=51.27 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=59.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC---eEEcCcccc-------ccHHHHhhccCCcEEEEeeCh-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG---TEHLGLPVF-------NSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G---~ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp- 125 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++... +.... .++.++.++ .++++++++.++|++|.+...
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~ 99 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAY 99 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccC
Confidence 357999999999999999999999999886432 21110 011122221 135555554479999987632
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.+.|++.+|.++
T Consensus 100 ~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~S 135 (330)
T 2pzm_A 100 KDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQ 135 (330)
T ss_dssp SCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 2356677888888998877655
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0061 Score=50.74 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe---EEcCcccc-------ccHHHHhhccCCcEEEEeeCh-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EHLGLPVF-------NSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~---ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp- 125 (181)
+++|+|.|++|.+|+.+++.+.+.|.+|++... +..... ++.++.++ .+++++++..++|++|.+...
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~ 100 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASY 100 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECceec
Confidence 468999999999999999999999999886532 211100 00122211 235666663459999986532
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 --------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 --------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 101 ~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS 137 (333)
T 2q1w_A 101 KDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT 137 (333)
T ss_dssp SCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 23567788888889988776553
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=52.01 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=58.7
Q ss_pred eEEEEccCCCCcchhhHHHHHh--CCeEeeec-CCCCCCeEE--cCcccc-------ccHHHHhhccCCcEEEEeeCh--
Q 030220 60 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGGTEH--LGLPVF-------NSVAEAKAETKANASVIYVPP-- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~--g~~IVagV-dP~~~G~ei--~GvPVy-------~sl~e~~~~~~~DVaIdfVPp-- 125 (181)
+|+|.|++|.+|+.+++.+.+. |.+|++.. ++... .++ .++.++ .+++++++ ++|++|.+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~~ 77 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-QALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSEV 77 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh-hhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc
Confidence 5899999999999999999987 89988643 23321 111 122222 24556665 78999887654
Q ss_pred ----HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ----PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ----~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 78 GQRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp ----CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 35677888888899988877654
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0017 Score=56.08 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=63.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~eai 136 (181)
++|.|+|+ |++|+.+++.+...|++++ ++|+..... ....--|.+++++.+ ++|++++.+|... ...++ ++.+
T Consensus 147 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~-~~~~~~~~~l~ell~--~aDvV~~~~p~t~~t~~li~~~~l 221 (331)
T 1xdw_A 147 CTVGVVGL-GRIGRVAAQIFHGMGATVI-GEDVFEIKG-IEDYCTQVSLDEVLE--KSDIITIHAPYIKENGAVVTRDFL 221 (331)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCCS-CTTTCEECCHHHHHH--HCSEEEECCCCCTTTCCSBCHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCccHH-HHhccccCCHHHHHh--hCCEEEEecCCchHHHHHhCHHHH
Confidence 57999999 9999999999999999976 466544221 111123558999887 7999999999642 22222 1222
Q ss_pred Hc-CCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 137 EA-ELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 137 e~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+. +-. .+|+++.| ..-|...|.++.+.
T Consensus 222 ~~mk~ga~lin~srg-~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 222 KKMKDGAILVNCARG-QLVDTEAVIEAVES 250 (331)
T ss_dssp HTSCTTEEEEECSCG-GGBCHHHHHHHHHH
T ss_pred hhCCCCcEEEECCCc-ccccHHHHHHHHHh
Confidence 22 222 35665555 44444555555543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0062 Score=50.17 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=58.3
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC----------CeEE----cCccccccHHHHhhccCCcEEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG----------GTEH----LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~----------G~ei----~GvPVy~sl~e~~~~~~~DVaI 120 (181)
.++++|+|.|++|-+|+.+++.+.+.|.+|++... +... +..+ .++-=..+++++++..++|++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi 91 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 91 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 46788999999999999999999999999886533 2210 0001 1111112456666655689998
Q ss_pred EeeCh------------------HHHHHHHHHHHHcCC-CEEEEeCC
Q 030220 121 IYVPP------------------PFAAAAIMEAMEAEL-DLVVCITE 148 (181)
Q Consensus 121 dfVPp------------------~~a~~~~~eaie~GI-k~IV~iTt 148 (181)
-+... .....+++.|.+.|+ +.+|.+++
T Consensus 92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 138 (335)
T 1rpn_A 92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST 138 (335)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 77532 123456777888886 67665553
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=56.04 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=64.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-M 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ 133 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ ++|+...... -.|+.. .+++++.+ ++|++++.+|... ....+ +
T Consensus 142 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvV~l~~p~~~~t~~li~~ 216 (307)
T 1wwk_A 142 GKTIGIIGF-GRIGYQVAKIANALGMNIL-LYDPYPNEERAKEVNGKF-VDLETLLK--ESDVVTIHVPLVESTYHLINE 216 (307)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCSTTTTTCBCH
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHhhcCccc-cCHHHHHh--hCCEEEEecCCChHHhhhcCH
Confidence 357999999 9999999999999999977 5666542210 135543 37889887 7999999999644 22222 1
Q ss_pred HH---HHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 EA---MEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 ea---ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+. ++.| ..+++++.| +.-|...|.++.+.
T Consensus 217 ~~l~~mk~g-a~lin~arg-~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 217 ERLKLMKKT-AILINTSRG-PVVDTNALVKALKE 248 (307)
T ss_dssp HHHHHSCTT-CEEEECSCG-GGBCHHHHHHHHHH
T ss_pred HHHhcCCCC-eEEEECCCC-cccCHHHHHHHHHh
Confidence 22 2222 346775665 33444445554443
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0016 Score=52.92 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=58.6
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH--------
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-------- 126 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-------- 126 (181)
-.+.++|+|.|+||.+|+.+++.+.+.|.+|++. +... + ++.=..++++++++.++|++|.+....
T Consensus 9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~-~----Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~ 82 (292)
T 1vl0_A 9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPT-DVQD-L----DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQ 82 (292)
T ss_dssp ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEE-CTTT-C----CTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHC
T ss_pred ccccceEEEECCCChHHHHHHHHHHhCCCeEEec-cCcc-C----CCCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcC
Confidence 3456889999999999999999999999988854 4332 1 122233566766655799999875421
Q ss_pred ----------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 ----------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ----------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|+ .+|.+++
T Consensus 83 ~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS 113 (292)
T 1vl0_A 83 YDLAYKINAIGPKNLAAAAYSVGA-EIVQIST 113 (292)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence 24567777888888 4444453
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00088 Score=58.63 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=59.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----EEcCccccc--------------------cHHHHhhc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFN--------------------SVAEAKAE 113 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----ei~GvPVy~--------------------sl~e~~~~ 113 (181)
.||.|.|+ |+.|+.+++.+.+. ++++|+..|....-. ...|+.+|. +.+++..
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~- 80 (343)
T 2yyy_A 3 AKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE- 80 (343)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG-
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc-
Confidence 58999999 99999999988875 899988655321100 011223322 2333333
Q ss_pred cCCcEEEEeeChHHHHHHHH-HHHHcCCCEEEEeCCC
Q 030220 114 TKANASVIYVPPPFAAAAIM-EAMEAELDLVVCITEG 149 (181)
Q Consensus 114 ~~~DVaIdfVPp~~a~~~~~-eaie~GIk~IV~iTtG 149 (181)
++|+++.++|.....+.++ .++++|.+ |+. +.+
T Consensus 81 -~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI~-sap 114 (343)
T 2yyy_A 81 -DADIVVDGAPKKIGKQNLENIYKPHKVK-AIL-QGG 114 (343)
T ss_dssp -GCSEEEECCCTTHHHHHHHHTTTTTTCE-EEE-CTT
T ss_pred -CCCEEEECCCccccHHHHHHHHHHCCCE-EEE-CCC
Confidence 7999999999999888886 99999955 554 554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=56.39 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=64.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~eai 136 (181)
.+|.|+|+ |+||+.+++.+...|++|+ +.|+........++...++++++.+ ++|++++.+|... ...++ ++.+
T Consensus 147 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~~l 222 (333)
T 1j4a_A 147 QVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRNPELEKKGYYVDSLDDLYK--QADVISLHVPDVPANVHMINDESI 222 (333)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTCBCSCHHHHHH--HCSEEEECSCCCGGGTTCBSHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcchhHHhhCeecCCHHHHHh--hCCEEEEcCCCcHHHHHHHhHHHH
Confidence 57999999 9999999999999999977 5676542210012333348899887 7999999999543 22222 1122
Q ss_pred Hc-CC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 137 EA-EL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 137 e~-GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+. +- ..+|+++.| +.-|...|.++.+.-
T Consensus 223 ~~mk~ga~lIn~arg-~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 223 AKMKQDVVIVNVSRG-PLVDTDAVIRGLDSG 252 (333)
T ss_dssp HHSCTTEEEEECSCG-GGBCHHHHHHHHHHT
T ss_pred hhCCCCcEEEECCCC-cccCHHHHHHHHHhC
Confidence 21 22 245665555 444555666665443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0038 Score=56.23 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=65.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-MEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~ea 135 (181)
.++|.|+|. |++|+.+.+.+...|++++ +.||...- ...+...+.+++|+.+ ++|++++.+|... ....+ ++.
T Consensus 156 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~yd~~~~~-~~~~~~~~~sl~ell~--~aDvV~lhvPlt~~T~~li~~~~ 230 (416)
T 3k5p_A 156 GKTLGIVGY-GNIGSQVGNLAESLGMTVR-YYDTSDKL-QYGNVKPAASLDELLK--TSDVVSLHVPSSKSTSKLITEAK 230 (416)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTCCC-CBTTBEECSSHHHHHH--HCSEEEECCCC-----CCBCHHH
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCcchh-cccCcEecCCHHHHHh--hCCEEEEeCCCCHHHhhhcCHHH
Confidence 357999999 9999999999999999987 56654321 1234445678999998 7999999999754 33333 222
Q ss_pred HH-cCCC-EEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 136 ME-AELD-LVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 136 ie-~GIk-~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
++ .+-. .+|+++.|-.+ |...|.++.+.-
T Consensus 231 l~~mk~gailIN~aRG~vv-d~~aL~~aL~~g 261 (416)
T 3k5p_A 231 LRKMKKGAFLINNARGSDV-DLEALAKVLQEG 261 (416)
T ss_dssp HHHSCTTEEEEECSCTTSB-CHHHHHHHHHTT
T ss_pred HhhCCCCcEEEECCCChhh-hHHHHHHHHHcC
Confidence 22 2322 36775666444 444555554433
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0027 Score=51.19 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecC-CCCCCeEE--cCcccc-------ccHHHHhhccCCcEEEEeeCh-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGGTEH--LGLPVF-------NSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVd-P~~~G~ei--~GvPVy-------~sl~e~~~~~~~DVaIdfVPp- 125 (181)
++|+|.|++|..|+.+++.+.+. |.+|++... +.+. .++ .++.++ .+++++++ ++|++|.+...
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~ 77 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA-STLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGPH 77 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH-hHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCCC
Confidence 36999999999999999999987 889886533 3221 111 122222 23556665 79999987643
Q ss_pred -------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 78 ~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 78 YDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 35667788888899988877564
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0097 Score=49.69 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE------------cCccc-------cccHHHHhhccCCc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH------------LGLPV-------FNSVAEAKAETKAN 117 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei------------~GvPV-------y~sl~e~~~~~~~D 117 (181)
+++|+|.|++|..|+.+++.+.+.|.+|++... +....... .++.+ ..+++++++ ++|
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d 104 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GVD 104 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CCC
Confidence 468999999999999999999999999886432 21100000 12221 124556666 799
Q ss_pred EEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 118 ASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 118 VaIdfVPp------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
++|.+... .....+++.|.+.|++.+|.++
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S 152 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAA 152 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 99987642 1235667778888998877655
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0091 Score=45.88 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeec-CCCCCCeEEcCccccc-cHHHH---hhccCCcEEEEeeCh-----
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGV-TPKKGGTEHLGLPVFN-SVAEA---KAETKANASVIYVPP----- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagV-dP~~~G~ei~GvPVy~-sl~e~---~~~~~~DVaIdfVPp----- 125 (181)
.++|+|.|++|..|+.+++.+.+.|. ++++.. ++.. +..++.++. ++.+. .+.. +|++|.+...
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---~~~~~~~~~~D~~~~~~~~~~~-~d~vi~~a~~~~~~~ 80 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---EHPRLDNPVGPLAELLPQLDGS-IDTAFCCLGTTIKEA 80 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---CCTTEECCBSCHHHHGGGCCSC-CSEEEECCCCCHHHH
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---cCCCceEEeccccCHHHHHHhh-hcEEEECeeeccccC
Confidence 36799999999999999999999887 777532 2222 122333322 44432 2222 8999987643
Q ss_pred -----------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -----------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -----------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 114 (215)
T 2a35_A 81 GSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA 114 (215)
T ss_dssp SSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECC
Confidence 24566778888899998777664
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0003 Score=61.76 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=66.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIM- 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~- 133 (181)
.++|.|+|. |++|+.+++.+...|++|+ +.|+..... .-.|+....+++|+.+ ++|++++.+|... ....+.
T Consensus 160 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li~~ 235 (352)
T 3gg9_A 160 GQTLGIFGY-GKIGQLVAGYGRAFGMNVL-VWGRENSKERARADGFAVAESKDALFE--QSDVLSVHLRLNDETRSIITV 235 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCCCSTTTTTCBCH
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EECCCCCHHHHHhcCceEeCCHHHHHh--hCCEEEEeccCcHHHHHhhCH
Confidence 357999999 9999999999999999987 566543111 1246666679999988 7999999999543 332222
Q ss_pred HHHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 EAMEA-EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 eaie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +- ..+|+++.| +.-|...|.++.+.--+
T Consensus 236 ~~l~~mk~gailIN~aRg-~~vd~~aL~~aL~~g~i 270 (352)
T 3gg9_A 236 ADLTRMKPTALFVNTSRA-ELVEENGMVTALNRGRP 270 (352)
T ss_dssp HHHTTSCTTCEEEECSCG-GGBCTTHHHHHHHHTSS
T ss_pred HHHhhCCCCcEEEECCCc-hhhcHHHHHHHHHhCCc
Confidence 22222 22 246664444 33444455555444333
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=44.19 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=56.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-----eE--EcCccccc-------cHHHH-hhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----TE--HLGLPVFN-------SVAEA-KAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-----~e--i~GvPVy~-------sl~e~-~~~~~~DVaIdf 122 (181)
..+|+|+|+ |+.|+.+++.+.+.|.+++. +++.... .+ -.|++++. .++++ ++ ++|++|.+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~v-id~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~ 78 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTV-ISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID--RCRAILAL 78 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEE-EECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT--TCSEEEEC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEE-EECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChh--hCCEEEEe
Confidence 357999998 99999999999999998774 4443100 00 02344432 23333 33 79999999
Q ss_pred eChHHHHHHHHH-HHHc-CCCEEEEeCCCCCH
Q 030220 123 VPPPFAAAAIME-AMEA-ELDLVVCITEGIPQ 152 (181)
Q Consensus 123 VPp~~a~~~~~e-aie~-GIk~IV~iTtG~~~ 152 (181)
++.+.....+.. +-+. +...|++-..+-..
T Consensus 79 ~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~ 110 (153)
T 1id1_A 79 SDNDADNAFVVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp SSCHHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred cCChHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 987765554444 4444 66666664554433
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.01 Score=46.35 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=59.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecC-CCC-----CC-eEE-cCccccccHHHHhhccCCcEEEEeeCh--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKK-----GG-TEH-LGLPVFNSVAEAKAETKANASVIYVPP-- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVd-P~~-----~G-~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp-- 125 (181)
+++|+|.|++|..|+.+++.+.+. |.+|++... +.. .+ ..+ .++-=..+++++.+ ++|++|.+...
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~~ 81 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAVP 81 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCCEEEEeccccc
Confidence 467999999999999999999997 888886422 111 00 001 12221224666666 79999876531
Q ss_pred -----------------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 -----------------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 -----------------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 82 KMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp EECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 23677788888889988877653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=51.53 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=58.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC--CCCCCe--EEcCccccc-c------HHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGT--EHLGLPVFN-S------VAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd--P~~~G~--ei~GvPVy~-s------l~e~~~~~~~DVaIdfVPp~~ 127 (181)
+||+|+|+ |++|+.+++.+.+.|.+++ .+| |..... +..|++++. + ++++- -.++|++|.+++.+.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~-i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVV-IINKDRELCEEFAKKLKATIIHGDGSHKEILRDAE-VSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHT-CCTTCEEEECCSCHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcC-cccCCEEEEecCCcH
Confidence 47999998 9999999999999998877 344 332110 112444432 2 33321 127999999999887
Q ss_pred HHHHHHHHHH--cCCCEEEEeCCCC
Q 030220 128 AAAAIMEAME--AELDLVVCITEGI 150 (181)
Q Consensus 128 a~~~~~eaie--~GIk~IV~iTtG~ 150 (181)
....+..... .+...|++-+.+-
T Consensus 78 ~n~~~~~~a~~~~~~~~iia~~~~~ 102 (218)
T 3l4b_C 78 VNLFIAQLVMKDFGVKRVVSLVNDP 102 (218)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCc
Confidence 7666665554 4888888755443
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=52.38 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=57.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeec-CCCCCC-----eEE-cCccccccHHHHhhccCCcEEEEeeCh----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG-----TEH-LGLPVFNSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagV-dP~~~G-----~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
++|+|.|++|.+|+.+++.+.+. |.+|++.. ++.... ..+ .++.=..++++++++.++|++|.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~ 82 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSAT 82 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCCc
Confidence 57999999999999999999887 78888643 222210 000 111112245666655579999988532
Q ss_pred -------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 -------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 -------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.++|++.+|.++
T Consensus 83 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 117 (312)
T 2yy7_A 83 AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPS 117 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCE
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 1234567777788998877544
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00085 Score=54.36 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=56.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh----------H---
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP----------P--- 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp----------~--- 126 (181)
+|+|.|++|.+|+.+++.+.+.|.+|++. +... + ++.=.+++++++++.++|++|.+... +
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~-~----D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 80 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYPF-DKKL-L----DITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAY 80 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEEE-CTTT-S----CTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEe-cccc-c----CCCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHH
Confidence 89999999999999999999989988854 3322 1 22223457777765579999977421 1
Q ss_pred -----HHHHHHHHHHHcCCCEEEE
Q 030220 127 -----FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 -----~a~~~~~eaie~GIk~IV~ 145 (181)
....+++.|.++|++.|..
T Consensus 81 ~~n~~~~~~l~~~~~~~~~~~v~~ 104 (287)
T 3sc6_A 81 VINAIGARNVAVASQLVGAKLVYI 104 (287)
T ss_dssp HHHTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1456788888889974443
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0021 Score=56.14 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCC-------------CCCe----------E--Ec--Cccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPK-------------KGGT----------E--HL--GLPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~-------------~~G~----------e--i~--GvPVy~--s 106 (181)
.||.|.|+ |+.|+.+.+.+.+. +++||+..|.. ..|. . +. .++++. +
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 37999999 99999999987765 69999765531 1111 1 12 256663 4
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+++. ++.++|+++.++|.....+.+...+++|.|.+|+
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI 119 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence 55542 2237999999999999999999999999998776
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00075 Score=56.47 Aligned_cols=94 Identities=14% Similarity=-0.003 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cC---ccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LG---LPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~G---vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+||+|+|+ |.||......+.+.|.+|. .+++...+-+. .| .++..+..+... .++|++|++||+....+++
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~~~~~~~l 79 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLPHTT-LIGRHAKTITYYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKTHQLDAVI 79 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCTTCE-EEESSCEEEEEESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCGGGHHHHG
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeccCcEEEEecCCeeccceecCchHhcC-CCCCEEEEeCCccCHHHHH
Confidence 58999999 9999999998888887755 34444322111 23 123323333321 2689999999999999988
Q ss_pred HHHHHc-C-CCEEEEeCCCCCHHHH
Q 030220 133 MEAMEA-E-LDLVVCITEGIPQHDM 155 (181)
Q Consensus 133 ~eaie~-G-Ik~IV~iTtG~~~ed~ 155 (181)
+++... + =..||.+.-|+..++.
T Consensus 80 ~~l~~~l~~~~~iv~~~nGi~~~~~ 104 (294)
T 3g17_A 80 PHLTYLAHEDTLIILAQNGYGQLEH 104 (294)
T ss_dssp GGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred HHHHHhhCCCCEEEEeccCcccHhh
Confidence 887654 2 2357777999987764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0019 Score=48.09 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=60.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccc-c--HHHHhhc---cCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a 128 (181)
..+|+|+|+ |++|+.+++.+.+.|.+++ .+|.+... .+ -.|++++. + -.+.+++ .++|++|+++|.+..
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLV-VIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 457999999 9999999999999999977 44433211 01 13555442 2 2222221 268999999997654
Q ss_pred H-HHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 129 A-AAIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~-~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
. .++..+-+. +...|++-+ -..++...|.++
T Consensus 85 n~~~~~~a~~~~~~~~iiar~--~~~~~~~~l~~~ 117 (140)
T 3fwz_A 85 AGEIVASARAKNPDIEIIARA--HYDDEVAYITER 117 (140)
T ss_dssp HHHHHHHHHHHCSSSEEEEEE--SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHC
Confidence 4 355555444 223344423 345556666654
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=56.45 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=63.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHH-HHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAI-MEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~-~eai 136 (181)
++|.|+|. |++|+.+.+.+...|++|+ +.||.... +..+.--|.+++|+.+ ++|++++.+|-. .....+ .+.+
T Consensus 149 ktvgIiGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~-~~~~~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li~~~~l 223 (343)
T 2yq5_A 149 LTVGLIGV-GHIGSAVAEIFSAMGAKVI-AYDVAYNP-EFEPFLTYTDFDTVLK--EADIVSLHTPLFPSTENMIGEKQL 223 (343)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCG-GGTTTCEECCHHHHHH--HCSEEEECCCCCTTTTTCBCHHHH
T ss_pred CeEEEEec-CHHHHHHHHHHhhCCCEEE-EECCChhh-hhhccccccCHHHHHh--cCCEEEEcCCCCHHHHHHhhHHHH
Confidence 57999999 9999999999999999977 56665422 2222223448999988 799999999942 222222 1222
Q ss_pred H-cCC-CEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 137 E-AEL-DLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 137 e-~GI-k~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
+ .+- ..+|+.+.| +.-|...|.++.+.-
T Consensus 224 ~~mk~gailIN~aRg-~~vd~~aL~~aL~~g 253 (343)
T 2yq5_A 224 KEMKKSAYLINCARG-ELVDTGALIKALQDG 253 (343)
T ss_dssp HHSCTTCEEEECSCG-GGBCHHHHHHHHHHT
T ss_pred hhCCCCcEEEECCCC-hhhhHHHHHHHHHcC
Confidence 2 222 346664444 334445555554433
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0062 Score=51.85 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=59.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCccc-------cccHHHHhhccCCcEEEEeeCh--
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPV-------FNSVAEAKAETKANASVIYVPP-- 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvPV-------y~sl~e~~~~~~~DVaIdfVPp-- 125 (181)
++++|+|.|++|.+|+.+++.+.+.|.+|++... +..... ...++.+ ..+++++++ ++|++|.+...
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~~ 105 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADMG 105 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceecC
Confidence 3578999999999999999999999999886432 222110 0012221 124566665 79999987532
Q ss_pred ---------H--------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------P--------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------~--------~a~~~~~eaie~GIk~IV~iTt 148 (181)
+ ....+++.|.++|++.+|.+++
T Consensus 106 ~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 106 GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 1 1346677788889988776553
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0056 Score=52.04 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=61.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC-------CCeEE--------cCccccccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEH--------LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~-------~G~ei--------~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++||+|+|+ |.||......+.+.|.++. .+++.. .|..+ ..+++.++.+++ + ++|++|++
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGEAIN-VLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G--EQDVVIVA 77 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTCCEE-EECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C--CCSEEEEC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C--CCCEEEEe
Confidence 368999999 9999999999988888765 344321 11111 123445677764 4 79999999
Q ss_pred eChHHHHHHHHHHHHc-C-CCEEEEeCCCCC
Q 030220 123 VPPPFAAAAIMEAMEA-E-LDLVVCITEGIP 151 (181)
Q Consensus 123 VPp~~a~~~~~eaie~-G-Ik~IV~iTtG~~ 151 (181)
||+....++++++... + =..|+.++.|++
T Consensus 78 vk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~ 108 (335)
T 3ghy_A 78 VKAPALESVAAGIAPLIGPGTCVVVAMNGVP 108 (335)
T ss_dssp CCHHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred CCchhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 9999888877765432 1 235677789974
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=60.46 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=67.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ea 135 (181)
++|.|+|. |+||+.+.+.+...|++|+ +.||...... -.|+... +++++.+ ++|++++.+|.. ....++.+.
T Consensus 143 ~~vgIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-~l~e~~~--~aDvV~l~~P~~~~t~~~i~~~ 217 (529)
T 1ygy_A 143 KTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIELL-SLDDLLA--RADFISVHLPKTPETAGLIDKE 217 (529)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCEEC-CHHHHHH--HCSEEEECCCCSTTTTTCBCHH
T ss_pred CEEEEEee-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCcEEc-CHHHHHh--cCCEEEECCCCchHHHHHhCHH
Confidence 57999999 9999999999999999977 5677542111 1355544 7889887 799999999998 666665542
Q ss_pred HHcCCC---EEEEeCCCCCHHHHHHHHHHhh
Q 030220 136 MEAELD---LVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 136 ie~GIk---~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+-...+ .+++++.|-... ...|.++.+
T Consensus 218 ~~~~~k~g~ilin~arg~iv~-~~aL~~al~ 247 (529)
T 1ygy_A 218 ALAKTKPGVIIVNAARGGLVD-EAALADAIT 247 (529)
T ss_dssp HHTTSCTTEEEEECSCTTSBC-HHHHHHHHH
T ss_pred HHhCCCCCCEEEECCCCchhh-HHHHHHHHH
Confidence 222222 466766665443 344444443
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0059 Score=49.99 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=57.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC--CeEE--cCccccccHHHHhhccCCcEEEEeeChH--
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG--GTEH--LGLPVFNSVAEAKAETKANASVIYVPPP-- 126 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~--G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~-- 126 (181)
...++++|+|.|++|-.|+.+++.+.+.|.+|++... +... +-+. .++-=..+++++++..++|++|-+....
T Consensus 8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 87 (321)
T 2pk3_A 8 HHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSV 87 (321)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred cccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccch
Confidence 4456788999999999999999999999999886432 2210 0011 1121122466666644699999875321
Q ss_pred ----------------HHHHHHHHHHHc-CCCEEEEeCC
Q 030220 127 ----------------FAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 127 ----------------~a~~~~~eaie~-GIk~IV~iTt 148 (181)
....+++.|.+. +++.+|.+++
T Consensus 88 ~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 126 (321)
T 2pk3_A 88 KDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS 126 (321)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence 134556666554 6887776553
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0054 Score=52.04 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=57.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC-eE---EcCccccc-------cHHHHhhccCCcEEEEeeC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---HLGLPVFN-------SVAEAKAETKANASVIYVP 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G-~e---i~GvPVy~-------sl~e~~~~~~~DVaIdfVP 124 (181)
++++|+|.|++|..|+.+++.+.+.| .+|++........ .. ..++.++. +++++++ ++|++|-+..
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~A~ 108 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHLAT 108 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEECCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEECCC
Confidence 35789999999999999999999999 9988643211110 00 11222221 2444444 7999998764
Q ss_pred hH------------------HHHHHHHHHHHc-CCCEEEEeCC
Q 030220 125 PP------------------FAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 125 p~------------------~a~~~~~eaie~-GIk~IV~iTt 148 (181)
.. ....+++.|.+. |++.+|.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS 151 (377)
T 2q1s_A 109 YHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA 151 (377)
T ss_dssp CSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 21 245566777777 8887776554
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.016 Score=47.44 Aligned_cols=91 Identities=9% Similarity=0.112 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC-eEE------cCcccc-------ccHHHHhhccCCcEEEEe
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEH------LGLPVF-------NSVAEAKAETKANASVIY 122 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G-~ei------~GvPVy-------~sl~e~~~~~~~DVaIdf 122 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++... +.... ..+ .++.++ .+++++++..++|++|-+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 82 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL 82 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 357999999999999999999999999886432 22110 000 012111 235566665568999987
Q ss_pred eCh------------------HHHHHHHHHHHHcCC-CEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAEL-DLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GI-k~IV~iTt 148 (181)
... .....+++.|.+.|+ +.+|.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (345)
T 2z1m_A 83 AAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp CCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence 542 124566777888887 66766553
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0095 Score=48.81 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-------EE--cCccccccHHHHhhccCCcEEEEeeCh---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-------EH--LGLPVFNSVAEAKAETKANASVIYVPP--- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-------ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp--- 125 (181)
|++|+|.|++|-.|+.+++.+.+.| .+|+..+...... +. .++.- .++.++++ ++|++|-+...
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~d~vih~a~~~~~ 76 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLK--GAEEVWHIAANPDV 76 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHT--TCSEEEECCCCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhc--CCCEEEECCCCCCh
Confidence 3579999999999999999999988 6555443222110 11 12222 35667766 79998876531
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
..+..+++.|.++|++.+|.+++
T Consensus 77 ~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 77 RIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp C-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 13455777788889988887675
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0043 Score=55.50 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=61.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCC--CCeEE--cCcccc--------c-----------cHHHHhhc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKK--GGTEH--LGLPVF--------N-----------SVAEAKAE 113 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~--~G~ei--~GvPVy--------~-----------sl~e~~~~ 113 (181)
.||.|.|+||..|+.+.+.+.+. .|++++... .+. -.+.. .+.+++ . .+.++...
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~ 83 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEA 83 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcC
Confidence 68999999999999988888775 688886411 111 00000 111222 1 13566654
Q ss_pred cCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 114 TKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 114 ~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.++|+++..++-.....-+..|+++|.+..+.
T Consensus 84 ~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLA 115 (376)
T 3a06_A 84 LKPDITMVAVSGFSGLRAVLASLEHSKRVCLA 115 (376)
T ss_dssp HCCSEEEECCCSTTHHHHHHHHHHHCSEEEEC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999999999999999777763
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00066 Score=50.69 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=49.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCcc--ccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLP--VFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvP--Vy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|+|+|+ |.||+.+.+.+.+.|.+ |..+|+.... ++ ..|.+ .++++++.++ ++|++|.++|...
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~Divi~at~~~~ 92 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIK--NNDVIITATSSKT 92 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEEECSCHHHHHH--TCSEEEECSCCSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceEeecCHHHHhc--CCCEEEEeCCCCC
Confidence 578999998 99999999998888998 5556654321 11 12333 5668888887 7999999999763
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0043 Score=54.56 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=64.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHh----CCeEeeecCC-------------CCCC----------e--EEcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTP-------------KKGG----------T--EHLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP-------------~~~G----------~--ei~G--vPVy~-- 105 (181)
.||.|.|+ |+.|+.+.+.+.+. ++++|+..|+ ...| + .+.| ++|+.
T Consensus 2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence 58999999 99999999987775 7999987664 1111 1 1223 56664
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.+++. .+.++|+++.+++.....+.+...+++|.+.|++ +
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi-S 122 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII-S 122 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE-S
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEE-C
Confidence 445543 2247999999988888888888999999998887 5
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.014 Score=48.88 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=57.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCeEE---cCcccc--------ccHHHHhhccCCcEEEEeeC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LGLPVF--------NSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~ei---~GvPVy--------~sl~e~~~~~~~DVaIdfVP 124 (181)
+++|+|.|++|-.|+.+++.+.+. |.+|++... +.... +. .++.++ .+++++++ ++|++|-+.-
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~A~ 100 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG-DLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPLVA 100 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTG-GGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEECBC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhh-hhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEcCc
Confidence 468999999999999999999998 999887533 22211 11 122222 23555665 7999997432
Q ss_pred ---hH---------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 ---PP---------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 ---p~---------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
+. ....+++.|.+.| +.+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS 141 (372)
T 3slg_A 101 IATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST 141 (372)
T ss_dssp CCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred cccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence 21 1245778888889 77666565
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0011 Score=55.81 Aligned_cols=87 Identities=13% Similarity=0.247 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccc--cccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..+|.|+|+ |++|+.+++.+...|++|+ .+|+.....+ -.|+.+ +.+++++.+ ++|+++..+|+....+..
T Consensus 157 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~~ 232 (300)
T 2rir_A 157 GSQVAVLGL-GRTGMTIARTFAALGANVK-VGARSSAHLARITEMGLVPFHTDELKEHVK--DIDICINTIPSMILNQTV 232 (300)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTCEEEEGGGHHHHST--TCSEEEECCSSCCBCHHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCeEEchhhHHHHhh--CCCEEEECCChhhhCHHH
Confidence 467999999 9999999999999999866 4555431100 024433 357888877 799999999985432221
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030220 133 MEAMEAELDLVVCITEG 149 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG 149 (181)
...++.| ..+++++.|
T Consensus 233 ~~~mk~g-~~lin~a~g 248 (300)
T 2rir_A 233 LSSMTPK-TLILDLASR 248 (300)
T ss_dssp HTTSCTT-CEEEECSST
T ss_pred HHhCCCC-CEEEEEeCC
Confidence 1222222 346675654
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0064 Score=54.55 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH----------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP---------- 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~---------- 126 (181)
+++|+|.|++|.+|+.+++.+.+.|.+|++... +.... .+.+ -+-+.+.+.++ ++|++|-+....
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-~v~~-d~~~~~~~~l~--~~D~Vih~A~~~~~~~~~~~~~ 222 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-KRFW-DPLNPASDLLD--GADVLVHLAGEPIFGRFNDSHK 222 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-CEEC-CTTSCCTTTTT--TCSEEEECCCC-----CCGGGH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-ceee-cccchhHHhcC--CCCEEEECCCCccccccchhHH
Confidence 678999999999999999999999999887543 22221 1211 11123444455 799998765421
Q ss_pred ---------HHHHHHHH-HHHcCCCEEEEeCC
Q 030220 127 ---------FAAAAIME-AMEAELDLVVCITE 148 (181)
Q Consensus 127 ---------~a~~~~~e-aie~GIk~IV~iTt 148 (181)
.+..+++. +.+.|++.+|.+++
T Consensus 223 ~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS 254 (516)
T 3oh8_A 223 EAIRESRVLPTKFLAELVAESTQCTTMISASA 254 (516)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14455665 45568887776453
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0067 Score=53.63 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--------------C---eE---------EcC--ccccc--
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------------G---TE---------HLG--LPVFN-- 105 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--------------G---~e---------i~G--vPVy~-- 105 (181)
..+.||.|.|+ |+.|+.+++.+.+.|++||+..||... | .+ +.| ++|+.
T Consensus 5 ~~~~kvgInGF-GRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 83 (346)
T 3h9e_O 5 ARELTVGINGF-GRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK 83 (346)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CCeeEEEEECC-ChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence 34678999999 999999999988888999987776321 1 01 233 56664
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.+++. .+.++|+++..+......+-+...+++|.|.||+
T Consensus 84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVI 124 (346)
T 3h9e_O 84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVI 124 (346)
T ss_dssp SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEE
T ss_pred ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence 455543 2347999999988888888889999999999887
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=49.73 Aligned_cols=89 Identities=11% Similarity=0.138 Sum_probs=60.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CC-eEeeecCCCCC------------CeEE--cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GT-KMVGGVTPKKG------------GTEH--LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~-~IVagVdP~~~------------G~ei--~GvPVy~sl~e~~~~~~~DVaId 121 (181)
.++|+|.|++|.+|+.+++.+.+. |. +|++. +.... +-+. .++.=..+++++++ ++|++|-
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~-~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vih 97 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVY-SRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE--GVDICIH 97 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEE-ESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT--TCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEE-ECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh--cCCEEEE
Confidence 467999999999999999999998 97 77653 32210 1011 12222224666665 7999998
Q ss_pred eeChH------------------HHHHHHHHHHHcCCCEEEEeCCC
Q 030220 122 YVPPP------------------FAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 122 fVPp~------------------~a~~~~~eaie~GIk~IV~iTtG 149 (181)
+.... ....+++.|.++|++.+|.+++.
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~ 143 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD 143 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 76321 23567888889999998887863
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0013 Score=57.05 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=66.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~ 133 (181)
.++|.|+|. |+||+.+.+.+...|++|+ +.||.....+ -.|+. +.+++++.+ ++|++++.+|.. .....+.
T Consensus 145 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~ 219 (330)
T 4e5n_A 145 NATVGFLGM-GAIGLAMADRLQGWGATLQ-YHEAKALDTQTEQRLGLR-QVACSELFA--SSDFILLALPLNADTLHLVN 219 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHTTTSCCEEE-EECSSCCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCCCcHhHHHhcCce-eCCHHHHHh--hCCEEEEcCCCCHHHHHHhC
Confidence 367999999 9999999999998999977 5676542111 12553 448999988 799999999953 3333332
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 134 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 134 -eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++. +-. .+|+++.| +.-|...|.++.+.-.+
T Consensus 220 ~~~l~~mk~gailIN~arg-~~vd~~aL~~aL~~g~i 255 (330)
T 4e5n_A 220 AELLALVRPGALLVNPCRG-SVVDEAAVLAALERGQL 255 (330)
T ss_dssp HHHHTTSCTTEEEEECSCG-GGBCHHHHHHHHHHTSE
T ss_pred HHHHhhCCCCcEEEECCCC-chhCHHHHHHHHHhCCc
Confidence 23322 222 35664555 44555556666554444
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.019 Score=51.46 Aligned_cols=104 Identities=17% Similarity=0.087 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCC---eEEcCc-----ccc--ccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG---TEHLGL-----PVF--NSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G---~ei~Gv-----PVy--~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|+|+|+ |.+|+.+++.+.+.|.+++. .-++.+.. .++.++ .+. .+++++++ ++|++|.++|..
T Consensus 3 ~k~VlViGa-G~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~~ 79 (450)
T 1ff9_A 3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 79 (450)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCccc
Confidence 467999994 99999999999888888543 22221100 001111 222 24556666 799999999987
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 127 FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
....+.+.|++.|.. +++ . .........+.++|++-.+
T Consensus 80 ~~~~i~~a~l~~g~~-vvd-~-~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 80 FHATVIKSAIRQKKH-VVT-T-SYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp CHHHHHHHHHHHTCE-EEE-S-SCCCHHHHHTHHHHHHTTC
T ss_pred cchHHHHHHHhCCCe-EEE-e-ecccHHHHHHHHHHHHCCC
Confidence 666778888998865 444 2 2334455677777765443
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=48.80 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=57.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCC------C-----------Ce--EE--cCccccccHHHHhhccCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKK------G-----------GT--EH--LGLPVFNSVAEAKAETKA 116 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~------~-----------G~--ei--~GvPVy~sl~e~~~~~~~ 116 (181)
++|+|.|++|-.|+.+++.+.+.|.+|++... +.. . +. +. .++.-..++++++++.++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 57999999999999999999999999886432 111 0 00 00 111111245566654468
Q ss_pred cEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 117 NASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 117 DVaIdfVPp------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
|++|-+... .....+++.|.+.|++.+|.++
T Consensus 83 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~S 131 (348)
T 1ek6_A 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSS 131 (348)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 998887532 1245566777788998877655
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.003 Score=53.33 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=60.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE--cCcccc----------ccHHHHhhccCCcEEEEeeCh
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF----------NSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei--~GvPVy----------~sl~e~~~~~~~DVaIdfVPp 125 (181)
+||+|+|+ |.||......+. .|.+|. .+++.... ..+ .|+.+. ..-++..+ ++|++|++|++
T Consensus 3 mkI~IiGa-Ga~G~~~a~~L~-~g~~V~-~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~--~~D~vilavK~ 77 (307)
T 3ego_A 3 LKIGIIGG-GSVGLLCAYYLS-LYHDVT-VVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINS--DFDLLVVTVKQ 77 (307)
T ss_dssp CEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCS--CCSEEEECCCG
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCCceE-EEECCHHHHHHHHhCCceEecCCCeecccccccccccC--CCCEEEEEeCH
Confidence 68999999 999998888888 787766 34443210 001 133221 11122222 68999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
....++++++-..+-..||.+.-|+..++
T Consensus 78 ~~~~~~l~~l~~~~~~~ivs~~nGi~~~e 106 (307)
T 3ego_A 78 HQLQSVFSSLERIGKTNILFLQNGMGHIH 106 (307)
T ss_dssp GGHHHHHHHTTSSCCCEEEECCSSSHHHH
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCccHHH
Confidence 99999988775433333788899998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=48.16 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=58.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-----------EE--cCccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-----------EH--LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-----------ei--~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
.++|+|.|++|.+|+.+++.+.+.|.+|++... +..... +. .++.-..+++++++..++|++|-+.
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 88 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA 88 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECC
Confidence 367999999999999999999999999886432 222110 00 1111112456666644699999876
Q ss_pred Ch------------------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030220 124 PP------------------PFAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 124 Pp------------------~~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
.. .....+++.|.+.+ ++.+|.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 132 (357)
T 1rkx_A 89 AQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS 132 (357)
T ss_dssp SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred CCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 41 11244667777776 888877675
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0045 Score=55.42 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=69.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-C-CeEeee---cCCCC--------CCeEE--c---------------Cccccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-G-TKMVGG---VTPKK--------GGTEH--L---------------GLPVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g-~~IVag---VdP~~--------~G~ei--~---------------GvPVy~-- 105 (181)
+.||.|.|+||.+|+.+++.+.+. + +++++. .|..+ .-..+ . +..++.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~ 83 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 83 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence 478999999999999999988884 4 888743 22210 00000 0 112221
Q ss_pred -cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhh-----hhch
Q 030220 106 -SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVN-----ILLV 167 (181)
Q Consensus 106 -sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak-----~ipv 167 (181)
.+.++.+.. +|+++..++-....+.+..|+++|.+.+.. --..-+..-..|.++|+ -+||
T Consensus 84 ~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlA-NKE~lv~~G~~l~~~A~~~gv~liPV 149 (388)
T 1r0k_A 84 DALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVALA-NKESLVSAGGLMIDAVREHGTTLLPV 149 (388)
T ss_dssp HHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEEEC-CSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred cHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEe-CcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 234555544 899999998888899999999999777664 22222233345555554 3676
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0054 Score=53.24 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=63.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEEcCccccccHHHHhhccCCcEEEEeeChH-HHHHHHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNSVAEAKAETKANASVIYVPPP-FAAAAIME- 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~-~a~~~~~e- 134 (181)
.++|.|+|. |++|+.+.+.+...|++|+ +.|+.... ....+.-.+.+++|+.+ ++|++++.+|.. .....+..
T Consensus 140 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~~~ 215 (324)
T 3hg7_A 140 GRTLLILGT-GSIGQHIAHTGKHFGMKVL-GVSRSGRERAGFDQVYQLPALNKMLA--QADVIVSVLPATRETHHLFTAS 215 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCCCTTCSEEECGGGHHHHHH--TCSEEEECCCCCSSSTTSBCTT
T ss_pred cceEEEEEE-CHHHHHHHHHHHhCCCEEE-EEcCChHHhhhhhcccccCCHHHHHh--hCCEEEEeCCCCHHHHHHhHHH
Confidence 357999999 9999999999999999987 45544311 11222223568999988 899999999943 22332221
Q ss_pred HHHc-C-CCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 135 AMEA-E-LDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 135 aie~-G-Ik~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.++. + =..+|+.+.|=.+ |...|.++.+.-
T Consensus 216 ~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g 247 (324)
T 3hg7_A 216 RFEHCKPGAILFNVGRGNAI-NEGDLLTALRTG 247 (324)
T ss_dssp TTTCSCTTCEEEECSCGGGB-CHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEECCCchhh-CHHHHHHHHHcC
Confidence 1211 1 1246775555444 444445544433
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=47.79 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=58.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC-----------C-eEE--cCccccccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-----------G-TEH--LGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~-----------G-~ei--~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
++|+|.|++|-+|+.+++.+.+.|.+|++... .... + -+. .++-=..+++++++..++|++|-+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence 57999999999999999999999999886432 1110 0 011 1121122466666644599999876
Q ss_pred ChH------------------HHHHHHHHHHHcCCC-EEEEeCC
Q 030220 124 PPP------------------FAAAAIMEAMEAELD-LVVCITE 148 (181)
Q Consensus 124 Pp~------------------~a~~~~~eaie~GIk-~IV~iTt 148 (181)
... ....+++.|.+.+++ .+|.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS 125 (347)
T 1orr_A 82 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST 125 (347)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 421 235577788888986 5655453
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0051 Score=50.04 Aligned_cols=86 Identities=9% Similarity=-0.004 Sum_probs=56.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC----CC---eEE---cCccccccHHHHhhccCCcEEEEeeCh--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK----GG---TEH---LGLPVFNSVAEAKAETKANASVIYVPP-- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~----~G---~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp-- 125 (181)
+++|+|.|+||.+|+.+++.+.+.|.+|++...... .. ... .++.++ ..++ . ++|++|-+.-.
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~Dl-~--~~d~vi~~a~~~~ 81 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELE--ERDL-S--DVRLVYHLASHKS 81 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCC--HHHH-T--TEEEEEECCCCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEE--eCcc-c--cCCEEEECCccCC
Confidence 468999999999999999999999999886533211 00 011 112111 1122 1 67888866531
Q ss_pred ---------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ---------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ---------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.++|++.+|.+++
T Consensus 82 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~SS 119 (321)
T 3vps_A 82 VPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGST 119 (321)
T ss_dssp HHHHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Confidence 23467888888999988876553
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0082 Score=49.13 Aligned_cols=86 Identities=17% Similarity=0.077 Sum_probs=52.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE-cCccccccHHHHhhccCCcEEEEeeCh-----------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPP----------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp----------- 125 (181)
++|+|.|++|.+|+.+++.+.+.|.+|++... +...+ .+ .++--..+++++++..++|++|.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~ 81 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPD 81 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-------------
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHH
Confidence 57999999999999999999999999886431 22111 11 122222346666664468998877532
Q ss_pred -------HHHHHHHHHHHHcCCCEEEE
Q 030220 126 -------PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 126 -------~~a~~~~~eaie~GIk~IV~ 145 (181)
.....+++.|.++|++.|..
T Consensus 82 ~~~~~n~~~~~~l~~a~~~~~~~~v~~ 108 (315)
T 2ydy_A 82 AASQLNVDASGNLAKEAAAVGAFLIYI 108 (315)
T ss_dssp ------CHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 22456777888888854443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0022 Score=53.87 Aligned_cols=86 Identities=14% Similarity=0.257 Sum_probs=56.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E--EcCccc--cccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e--i~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
..+|.|+|+ |++|+.+.+.+...|++|+ .+|+..... . -.|..+ +.+++++++ ++|++++++|.....+..
T Consensus 155 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~~ 230 (293)
T 3d4o_A 155 GANVAVLGL-GRVGMSVARKFAALGAKVK-VGARESDLLARIAEMGMEPFHISKAAQELR--DVDVCINTIPALVVTANV 230 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTSEEEEGGGHHHHTT--TCSEEEECCSSCCBCHHH
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecChhhHHHHhc--CCCEEEECCChHHhCHHH
Confidence 467999998 9999999999999999866 455543110 0 124433 357888777 799999999975443322
Q ss_pred HHHHHcCCCEEEEeCC
Q 030220 133 MEAMEAELDLVVCITE 148 (181)
Q Consensus 133 ~eaie~GIk~IV~iTt 148 (181)
...++.| ..+++++.
T Consensus 231 l~~mk~~-~~lin~ar 245 (293)
T 3d4o_A 231 LAEMPSH-TFVIDLAS 245 (293)
T ss_dssp HHHSCTT-CEEEECSS
T ss_pred HHhcCCC-CEEEEecC
Confidence 2233333 34666554
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.02 Score=48.14 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC----CeE---------EcCcccc-------ccHHHHhhccCCc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG----GTE---------HLGLPVF-------NSVAEAKAETKAN 117 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~----G~e---------i~GvPVy-------~sl~e~~~~~~~D 117 (181)
++|+|.|++|-+|+.+++.+.+.|.+|++... +... -.. -.++.++ .+++++++..++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 57999999999999999999999999886432 2210 000 0122221 2355666655689
Q ss_pred EEEEeeCh------------------HHHHHHHHHHHHcCC---CEEEEeC
Q 030220 118 ASVIYVPP------------------PFAAAAIMEAMEAEL---DLVVCIT 147 (181)
Q Consensus 118 VaIdfVPp------------------~~a~~~~~eaie~GI---k~IV~iT 147 (181)
++|-+... .....+++.|.+.++ +.+|.++
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S 155 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 155 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99887532 123456777888888 6666555
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0062 Score=54.21 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=62.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFA- 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a- 128 (181)
..+|+|+|+ |++|+.+++.+.+.|.+++. ..||..... .-.|++++. + =.+++++ .++|++|++++....
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH
Confidence 457999999 99999999999999999774 244433210 014677663 2 1222221 278999999986554
Q ss_pred HHHHHHHHHcCCC-EEEEeCCCCCHHHHHHHHHH
Q 030220 129 AAAIMEAMEAELD-LVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~~~~eaie~GIk-~IV~iTtG~~~ed~~~l~~~ 161 (181)
..++..+-+.+.+ .|++-+ ...++..+|.++
T Consensus 83 ~~i~~~ar~~~p~~~Iiara--~~~~~~~~L~~~ 114 (413)
T 3l9w_A 83 LQLTEMVKEHFPHLQIIARA--RDVDHYIRLRQA 114 (413)
T ss_dssp HHHHHHHHHHCTTCEEEEEE--SSHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 4455555566765 344323 234555555554
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.024 Score=46.21 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=57.0
Q ss_pred eEEEEccCCCCcchhhHHHHHh--CCeEeee-cCCCCC-CeEE--cCccccccHHHHhhccCCcEEEEeeChH-------
Q 030220 60 RVICQGITGKNGTFHTEQAIEY--GTKMVGG-VTPKKG-GTEH--LGLPVFNSVAEAKAETKANASVIYVPPP------- 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~--g~~IVag-VdP~~~-G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp~------- 126 (181)
||+|.|++|..|+.+++.+.+. |.+|++. .++... +.+. .++.=..++++++++.++|++|.+....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~ 80 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKD 80 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccC
Confidence 5899999999999999999887 7887754 222221 1011 1122122466666555799999876421
Q ss_pred ----------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 ----------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ----------~a~~~~~eaie~GIk~IV~iT 147 (181)
....+++.|.++|++.+|.++
T Consensus 81 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S 111 (317)
T 3ajr_A 81 PALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHhhhhhHHHHHHHHHHHHcCCCEEEEec
Confidence 235567777788998877654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0043 Score=54.80 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=65.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHH-HHHHH-HH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAI-ME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~-~e 134 (181)
.+|.|+|. |++|+.+++.+...|++|+ +.||...... -.|+. +.+++|+.+ ++|++++.+|... ....+ .+
T Consensus 177 ktvGIIGl-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~ 251 (365)
T 4hy3_A 177 SEIGIVGF-GDLGKALRRVLSGFRARIR-VFDPWLPRSMLEENGVE-PASLEDVLT--KSDFIFVVAAVTSENKRFLGAE 251 (365)
T ss_dssp SEEEEECC-SHHHHHHHHHHTTSCCEEE-EECSSSCHHHHHHTTCE-ECCHHHHHH--SCSEEEECSCSSCC---CCCHH
T ss_pred CEEEEecC-CcccHHHHHhhhhCCCEEE-EECCCCCHHHHhhcCee-eCCHHHHHh--cCCEEEEcCcCCHHHHhhcCHH
Confidence 57999999 9999999999988999977 5676542211 13554 568999998 8999999999652 33333 22
Q ss_pred HHHc-CC-CEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 135 AMEA-EL-DLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~-GI-k~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.++. +- ..+|+++.| +.-|...|.++.+.
T Consensus 252 ~l~~mk~gailIN~aRG-~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 252 AFSSMRRGAAFILLSRA-DVVDFDALMAAVSS 282 (365)
T ss_dssp HHHTSCTTCEEEECSCG-GGSCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEECcCC-chhCHHHHHHHHHc
Confidence 2222 22 246775555 44555556665543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0078 Score=52.15 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecC---CC---------CCCeEEc-----C--------cc-ccccHHHHh
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT---PK---------KGGTEHL-----G--------LP-VFNSVAEAK 111 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVd---P~---------~~G~ei~-----G--------vP-Vy~sl~e~~ 111 (181)
+||.|+|+ |.||......+.+ .|.+|. .++ +. ..|..+. | +. +..+++++.
T Consensus 3 mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (404)
T 3c7a_A 3 VKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI 80 (404)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence 68999999 9999999998877 487765 334 21 1110010 2 12 455788877
Q ss_pred hccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 112 AETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 112 ~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
+ ++|++|++||+....++++++..
T Consensus 81 ~--~aD~Vilav~~~~~~~v~~~l~~ 104 (404)
T 3c7a_A 81 S--GADVVILTVPAFAHEGYFQAMAP 104 (404)
T ss_dssp T--TCSEEEECSCGGGHHHHHHHHTT
T ss_pred C--CCCEEEEeCchHHHHHHHHHHHh
Confidence 6 79999999999999888877654
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.018 Score=47.11 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=57.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-cCcccc-------ccHHHHhhccCCcEEEEeeCh----
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLPVF-------NSVAEAKAETKANASVIYVPP---- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-~GvPVy-------~sl~e~~~~~~~DVaIdfVPp---- 125 (181)
++|+|.|++|.+|+.+++.+.+.|.+|++........ ..+ .++.++ .++++++++.++|+++.....
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~ 80 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVK 80 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCch
Confidence 3799999999999999999999999988643211100 000 122221 235566654478998876521
Q ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 --------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 --------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 117 (311)
T 2p5y_A 81 VSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST 117 (311)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 12355677788889988876654
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0065 Score=51.29 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=56.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC-------------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP------------- 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP------------- 124 (181)
+||+|.|+||.+|+.+++.+.+.|. ++++ +|... =..+++++.+ ++|++|.+..
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~-~d~~~---------d~~~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~~ 68 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE-VHRQT---------KEEELESALL--KADFIVHLAGVNRPEHDKEFSLG 68 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-CCTTC---------CHHHHHHHHH--HCSEEEECCCSBCTTCSTTCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEE-ECCCC---------CHHHHHHHhc--cCCEEEECCcCCCCCCHHHHHHH
Confidence 4799999999999999999999887 7774 34320 0124666666 6898887652
Q ss_pred -hHHHHHHHHHHHHcCCC-EEEEeCC
Q 030220 125 -PPFAAAAIMEAMEAELD-LVVCITE 148 (181)
Q Consensus 125 -p~~a~~~~~eaie~GIk-~IV~iTt 148 (181)
-..+..+++.|.++|++ .+|.+++
T Consensus 69 n~~~~~~l~~a~~~~~~~~~~v~~Ss 94 (369)
T 3st7_A 69 NVSYLDHVLDILTRNTKKPAILLSSS 94 (369)
T ss_dssp CCBHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCc
Confidence 23467788888889988 5665453
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0091 Score=48.39 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=58.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC--eEE--cCccccccHHHHhhccCCcEEEEeeCh-------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG--TEH--LGLPVFNSVAEAKAETKANASVIYVPP------- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G--~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp------- 125 (181)
+++|+|.|+ |.+|+.+++.+.+.|.+|++... +.... -+. .++-=..+++++.+ .++|++|.+..+
T Consensus 3 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih~a~~~~~~~~~ 80 (286)
T 3gpi_A 3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVH-LRPEILVYCVAASEYSDEH 80 (286)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGG-GCCSEEEECHHHHHHC---
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhc-CCCCEEEEeCCCCCCCHHH
Confidence 467999995 99999999999999999886532 22111 011 12221224555554 249999987643
Q ss_pred ------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 126 ------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 126 ------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.....+++.|.+.|++.+|.+++
T Consensus 81 ~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 81 YRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp --CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 34667777777889888776553
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0021 Score=54.97 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe----E------EcCccccccHHHHhhccCCcEEEEee
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----E------HLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~----e------i~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
....+++|.|+|+ |.||.-++..+. .|++++ ..|+....- + ..++...+++++ .+ ++|++|..+
T Consensus 8 ~~~~~~~V~vIG~-G~MG~~iA~~la-aG~~V~-v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~--~aDlVieav 81 (293)
T 1zej_A 8 HHHHHMKVFVIGA-GLMGRGIAIAIA-SKHEVV-LQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VK--DCDIVMEAV 81 (293)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GG--GCSEEEECC
T ss_pred cccCCCeEEEEee-CHHHHHHHHHHH-cCCEEE-EEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-Hc--CCCEEEEcC
Confidence 3445689999999 999999999998 999966 445432110 0 015666777876 45 799999999
Q ss_pred ChHHHH--HHHHHHHHcCCCE-EEE-eCCCCCHHHHHH-HHHHhhhhchhchh
Q 030220 124 PPPFAA--AAIMEAMEAELDL-VVC-ITEGIPQHDMVI-NFTRVNILLVAFLN 171 (181)
Q Consensus 124 Pp~~a~--~~~~eaie~GIk~-IV~-iTtG~~~ed~~~-l~~~ak~ipv~~~~ 171 (181)
|..... .+..+ ++.- +. |+. -|+.++..++.+ +....+.+.+-|.|
T Consensus 82 pe~~~vk~~l~~~-l~~~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~ 132 (293)
T 1zej_A 82 FEDLNTKVEVLRE-VERL-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN 132 (293)
T ss_dssp CSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS
T ss_pred cCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC
Confidence 988752 33233 3332 33 442 267899886655 22233445555554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.018 Score=47.11 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=57.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCC-------------CCeE-E--cCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKK-------------GGTE-H--LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~-------------~G~e-i--~GvPVy~sl~e~~~~~~~DVa 119 (181)
+.++|+|.|++|-.|+.+++.+.+.|.+|++... +.. .+-+ + .++.-..+++++.+ ++|++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGV 87 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCCEE
Confidence 3468999999999999999999999999886432 111 0101 1 11221224555555 79999
Q ss_pred EEeeCh---------------HHHHHHHHHHHH-cCCCEEEEeCC
Q 030220 120 VIYVPP---------------PFAAAAIMEAME-AELDLVVCITE 148 (181)
Q Consensus 120 IdfVPp---------------~~a~~~~~eaie-~GIk~IV~iTt 148 (181)
|-+... .....+++.|.+ .+++.+|.+++
T Consensus 88 ih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 88 AHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 987632 224456666663 68888877665
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0057 Score=49.64 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=59.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCC---eEE--cCccccccHHHHhhccCCcEEEEeeC--------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGG---TEH--LGLPVFNSVAEAKAETKANASVIYVP-------- 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G---~ei--~GvPVy~sl~e~~~~~~~DVaIdfVP-------- 124 (181)
++|+|.|++|-+|+.+++.+.+.|.+|++. .++.+.. -+. .++-=..+++++.+ ++|++|-..-
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vi~~Ag~~~~~~~~ 81 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVA--GCDGIVHLGGISVEKPFE 81 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHT--TCSEEEECCSCCSCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHc--CCCEEEECCCCcCcCCHH
Confidence 579999999999999999999999887753 3332211 111 12322234666666 7999987631
Q ss_pred ------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 ------PPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 ------p~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-.....+++.|.++|++.||.+++
T Consensus 82 ~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 82 QILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 123456788888899988888664
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.024 Score=51.33 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=66.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE---cCcc-----c--cccHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LGLP-----V--FNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei---~GvP-----V--y~sl~e~~~~~~~DVaIdfVPp 125 (181)
+.+|+|+|+ |.+|+.+++.+.+. |++|+ .+|+.... +++ .++. + ++++.++++ ++|++|.++|+
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V~-v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAANDDINVT-VACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSTTEEEE-EEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSCG
T ss_pred CCEEEEECC-hHHHHHHHHHHHhCCCCeEE-EEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCch
Confidence 467999998 99999999999887 77754 33432110 011 1222 1 124556666 79999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.....+.+.|++.|+..+-. + -+. .+...+.+.|++-
T Consensus 99 ~~~~~v~~a~l~~g~~vvd~-~-~~~-p~~~~Ll~~Ak~a 135 (467)
T 2axq_A 99 TFHPNVVKSAIRTKTDVVTS-S-YIS-PALRELEPEIVKA 135 (467)
T ss_dssp GGHHHHHHHHHHHTCEEEEC-S-CCC-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCEEEEe-e-cCC-HHHHHHHHHHHHc
Confidence 87777889999999765532 2 223 3455666666554
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0018 Score=57.65 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=48.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
++|.|+|. |++|+.+++.+...|++|+ +.||.... ..+...+.+++|+.+ ++|++++.+|-.
T Consensus 120 ktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~~~--~~~~~~~~sl~ell~--~aDiV~l~~Plt 181 (381)
T 3oet_A 120 RTIGIVGV-GNVGSRLQTRLEALGIRTL-LCDPPRAA--RGDEGDFRTLDELVQ--EADVLTFHTPLY 181 (381)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHHHH--TTCCSCBCCHHHHHH--HCSEEEECCCCC
T ss_pred CEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCChHH--hccCcccCCHHHHHh--hCCEEEEcCcCC
Confidence 57999999 9999999999999999987 45653211 111234678999998 799999999844
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0061 Score=49.39 Aligned_cols=84 Identities=14% Similarity=-0.012 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh-------------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP------------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp------------- 125 (181)
+||+|.|++|..|+.+++.+. .|.+|++. +..... ...++.=..+++++++..++|++|.+...
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~-~r~~~~-~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~ 77 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIAL-DVHSKE-FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA 77 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEE-CTTCSS-SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEe-cccccc-ccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHH
Confidence 379999999999999999888 79998864 332211 01122223356777764469999987532
Q ss_pred -----HHHHHHHHHHHHcCCCEEEE
Q 030220 126 -----PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 126 -----~~a~~~~~eaie~GIk~IV~ 145 (181)
.....+++.|.+.|++.|..
T Consensus 78 ~~~n~~~~~~l~~a~~~~~~~~v~~ 102 (299)
T 1n2s_A 78 QLLNATSVEAIAKAANETGAWVVHY 102 (299)
T ss_dssp HHHHTHHHHHHHHHHTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 12466777777788864443
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.029 Score=47.32 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=57.6
Q ss_pred ceEEEEccCCCCcchhhHHHH-HhCCeEeeecC-CCCC--------CeEE-------------cC---cccc-------c
Q 030220 59 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVT-PKKG--------GTEH-------------LG---LPVF-------N 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~~g~~IVagVd-P~~~--------G~ei-------------~G---vPVy-------~ 105 (181)
++|+|.|++|-+|+.+++.+. +.|.+|++... +... ...+ .+ +.++ .
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 82 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHH
Confidence 579999999999999999999 88999886432 1111 0000 01 2221 1
Q ss_pred cHHHHhhccC-CcEEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 SVAEAKAETK-ANASVIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 sl~e~~~~~~-~DVaIdfVPp------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++++++.+ +|++|-+... .....+++.|.+.|++.+|.++
T Consensus 83 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~S 143 (397)
T 1gy8_A 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSS 143 (397)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEEC
Confidence 3556665445 9999987532 2344567777788998777655
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.016 Score=48.65 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH--hCCeEeeecC-CC------------CCCeEE---------cCccccccHHHHhhc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVT-PK------------KGGTEH---------LGLPVFNSVAEAKAE 113 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~--~g~~IVagVd-P~------------~~G~ei---------~GvPVy~sl~e~~~~ 113 (181)
+++|+|.|++|-.|+.+++.+.+ .|.+|++... +. ..-... .++--..+++++ ..
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~ 88 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL-EK 88 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-TT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-hc
Confidence 46899999999999999999999 8999886432 21 000000 111111234554 12
Q ss_pred cCCcEEEEeeCh----------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 114 TKANASVIYVPP----------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 114 ~~~DVaIdfVPp----------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.++|++|-+.-. ..+..+++.|.+.|++ +|.+++
T Consensus 89 ~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS 138 (362)
T 3sxp_A 89 LHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS 138 (362)
T ss_dssp SCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred cCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence 379999976431 3345677888888998 655454
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=46.73 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=44.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.+||.|+|+ |+||....+.+.+.|.+|+ ++|.. ++ .+ ++| ++++|.....++++++.
T Consensus 5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~~V~-~~~~~---------------~~-~~--~aD--ilavP~~ai~~vl~~l~ 62 (232)
T 3dfu_A 5 PRLRVGIFDD-GSSTVNMAEKLDSVGHYVT-VLHAP---------------ED-IR--DFE--LVVIDAHGVEGYVEKLS 62 (232)
T ss_dssp CCCEEEEECC-SCCCSCHHHHHHHTTCEEE-ECSSG---------------GG-GG--GCS--EEEECSSCHHHHHHHHH
T ss_pred CCcEEEEEee-CHHHHHHHHHHHHCCCEEE-EecCH---------------HH-hc--cCC--EEEEcHHHHHHHHHHHH
Confidence 3468999999 9999999999999999877 44431 22 23 467 77788777777776665
Q ss_pred Hc
Q 030220 137 EA 138 (181)
Q Consensus 137 e~ 138 (181)
..
T Consensus 63 ~~ 64 (232)
T 3dfu_A 63 AF 64 (232)
T ss_dssp TT
T ss_pred Hh
Confidence 43
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=47.66 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred ccCCCCCeeeccC---CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---E
Q 030220 45 SAAASHPAVFVDK---NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---A 118 (181)
Q Consensus 45 ~~~~~~~~~~~~~---~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---V 118 (181)
++.+...++.+.+ ...|+|.|++|-+|+.+++.+.+.|.+++...+..... . ..+.+.+++...+ +
T Consensus 10 ~~~~~~~n~~~~~m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~ 81 (272)
T 4e3z_A 10 GVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREA--A------DAVVAAITESGGEAVAI 81 (272)
T ss_dssp --------------CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--H------HHHHHHHHHTTCEEEEE
T ss_pred CCCCCChhhhhhhccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhH--H------HHHHHHHHhcCCcEEEE
Confidence 3444554544443 34588889999999999999999999986543433211 0 1111111111222 2
Q ss_pred EEEeeChHHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 119 SVIYVPPPFAAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
..|...++.+.++++++.+. ++..+|+ ..|+
T Consensus 82 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~-nAg~ 114 (272)
T 4e3z_A 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVN-NAGI 114 (272)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred EcCCCCHHHHHHHHHHHHHhCCCCCEEEE-CCCC
Confidence 34667788888888888776 7888888 5554
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.014 Score=49.16 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=27.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
++|+|.|++|-+|+.+++.+.+.|.+|++.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~ 58 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGL 58 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999998864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0012 Score=58.79 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=63.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH-----HHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA-----AAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a-----~~~~~ 133 (181)
++|.|+|. |++|+.+++.+...|++++ +.||..... -.|. .+.+++|+.+ ++|++++.+|.... ...+.
T Consensus 117 ~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~-~~g~-~~~~l~ell~--~aDvV~l~~Plt~~g~~~T~~li~ 190 (380)
T 2o4c_A 117 RTYGVVGA-GQVGGRLVEVLRGLGWKVL-VCDPPRQAR-EPDG-EFVSLERLLA--EADVISLHTPLNRDGEHPTRHLLD 190 (380)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHHHHH-STTS-CCCCHHHHHH--HCSEEEECCCCCSSSSSCCTTSBC
T ss_pred CEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCChhhh-ccCc-ccCCHHHHHH--hCCEEEEeccCccccccchhhhcC
Confidence 57999999 9999999999999999987 456532111 1233 3568999988 79999999986552 22332
Q ss_pred -HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhh
Q 030220 134 -EAMEA-ELD-LVVCITEGIPQHDMVINFTRVN 163 (181)
Q Consensus 134 -eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak 163 (181)
+.++. +-. .+++.+.| +.-|...|.++.+
T Consensus 191 ~~~l~~mk~gailIN~sRG-~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 191 EPRLAALRPGTWLVNASRG-AVVDNQALRRLLE 222 (380)
T ss_dssp HHHHHTSCTTEEEEECSCG-GGBCHHHHHHHHH
T ss_pred HHHHhhCCCCcEEEECCCC-cccCHHHHHHHHH
Confidence 22322 222 46665665 3444455555543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.04 Score=45.91 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC--C--eEE--------cCcccc-------ccHHHHhhccCCc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG--G--TEH--------LGLPVF-------NSVAEAKAETKAN 117 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~--G--~ei--------~GvPVy-------~sl~e~~~~~~~D 117 (181)
+++|+|.|++|-.|+.+++.+.+.|.+|++... +... . .++ .++.++ .+++++.+..++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 357999999999999999999999999886432 2110 0 000 122222 1355666645689
Q ss_pred EEEEeeCh------------------HHHHHHHHHHHHcCC---CEEEEeCC
Q 030220 118 ASVIYVPP------------------PFAAAAIMEAMEAEL---DLVVCITE 148 (181)
Q Consensus 118 VaIdfVPp------------------~~a~~~~~eaie~GI---k~IV~iTt 148 (181)
++|-+... .....+++.|.++++ +.+|.+++
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS 132 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST 132 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 98876421 134556778888888 66666553
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.025 Score=46.96 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCC------------CeEE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKG------------GTEH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~------------G~ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||+|.|++|-+|+.+++.+.+. |.+|++... +... +-+. .++.-..++++++++.++|++|-+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 36999999999999999999987 788886432 1100 0000 111112245566554479999987
Q ss_pred eCh------------------HHHHHHHHHHHHc--CCC-------EEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEA--ELD-------LVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~--GIk-------~IV~iTt 148 (181)
... .....+++.|.+. +++ .+|.+++
T Consensus 81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS 133 (361)
T 1kew_A 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST 133 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCC
Confidence 532 1245667778887 887 6666554
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0067 Score=55.22 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCC--------------Ce--------EEcCccccccHHHHhhc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKG--------------GT--------EHLGLPVFNSVAEAKAE 113 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~--------------G~--------ei~GvPVy~sl~e~~~~ 113 (181)
+.+||.|+|+ |.||.-++..+.+.|++|+. .+++.+. |. ....+....+++ .++
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~- 129 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLS- 129 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCT-
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHc-
Confidence 4478999999 99999999999999999763 3444310 00 001233455665 345
Q ss_pred cCCcEEEEeeChHH--HHHHHHHHHHcCCC--EEE-EeCCCCCHHHHH
Q 030220 114 TKANASVIYVPPPF--AAAAIMEAMEAELD--LVV-CITEGIPQHDMV 156 (181)
Q Consensus 114 ~~~DVaIdfVPp~~--a~~~~~eaie~GIk--~IV-~iTtG~~~ed~~ 156 (181)
++|++|..||.+. -+++..+ ++.-++ .|+ ..|++++..++.
T Consensus 130 -~aDlVIeAVpe~~~vk~~v~~~-l~~~~~~~aIlasnTSsl~i~~ia 175 (460)
T 3k6j_A 130 -NCDLIVESVIEDMKLKKELFAN-LENICKSTCIFGTNTSSLDLNEIS 175 (460)
T ss_dssp -TCSEEEECCCSCHHHHHHHHHH-HHTTSCTTCEEEECCSSSCHHHHH
T ss_pred -cCCEEEEcCCCCHHHHHHHHHH-HHhhCCCCCEEEecCCChhHHHHH
Confidence 7999999999643 3344444 444332 344 348889986554
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.038 Score=45.54 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=56.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCC-C----------Ce--EE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKK-G----------GT--EH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~-~----------G~--ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
++|+|.|++|..|+.+++.+.+.|.+|++... ... . +. +. .++--..++++++++.++|++|-+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 36999999999999999999999999876421 111 0 00 00 111111245566654469999876
Q ss_pred eCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 123 VPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 123 VPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
.-. .....+++.|.+.|++.+|.+++
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 124 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS 124 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 421 12344566677789988777553
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.097 Score=43.07 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=57.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCC-----------eEE----cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-----------TEH----LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G-----------~ei----~GvPVy~sl~e~~~~~~~DVaId 121 (181)
.++|+|.|++|-.|+.+++.+.+.|.+|++.+ ++.... ..+ .++.=..+++++++ ++|++|-
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih 86 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA--GCDFVFH 86 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT--TCSEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc--CCCEEEE
Confidence 36799999999999999999999999988743 333210 001 11221234666766 7898886
Q ss_pred eeC--------h---------HHHHHHHHHHHHcC-CCEEEEeCC
Q 030220 122 YVP--------P---------PFAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 122 fVP--------p---------~~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
... + .....+++.|.+++ ++.+|.+++
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS 131 (338)
T 2rh8_A 87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131 (338)
T ss_dssp ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence 531 1 12345566777776 888887664
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.029 Score=46.07 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++....... . ... .+ .+++ ++...+ +..|.+.++.+.+++++
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~-~-~~~--~~---~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA-E-RAQ--AV---VSEI-EQAGGRAVAIRADNRDAEAIEQAIRE 102 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH-H-HHH--HH---HHHH-HHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-H-HHH--HH---HHHH-HhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 356889999999999999999999999775422211 0 000 11 1121 111222 44577888889999988
Q ss_pred HHHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 135 AMEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+.+. ++..+|+ ..|+ +.++..++.+.
T Consensus 103 ~~~~~g~iD~lvn-nAg~~~~~~~~~~~~~~~~~~~~v 139 (271)
T 3v2g_A 103 TVEALGGLDILVN-SAGIWHSAPLEETTVADFDEVMAV 139 (271)
T ss_dssp HHHHHSCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCcEEEE-CCCCCCCCChhhCCHHHHHHHHHH
Confidence 8876 7888988 6564 45555554443
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.017 Score=50.71 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=66.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC--------------C---eE---------EcC--ccccc--c
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG--------------G---TE---------HLG--LPVFN--S 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~--------------G---~e---------i~G--vPVy~--s 106 (181)
+.||.|-|+ |+.|+.+.+.+.+. +++||+..||... | .+ +.| ++|+. +
T Consensus 1 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 79 (332)
T 3pym_A 1 MVRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD 79 (332)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CeEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence 368999999 99999999988875 7999998887310 1 01 233 56764 4
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.++++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 80 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 119 (332)
T 3pym_A 80 PANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119 (332)
T ss_dssp GGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEE
T ss_pred cccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEE
Confidence 55553 2348999999888888888888999999999987
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.027 Score=45.83 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeE-EcCccccc-c-----HHHHhhccCCcEEEEeeC------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE-HLGLPVFN-S-----VAEAKAETKANASVIYVP------ 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~e-i~GvPVy~-s-----l~e~~~~~~~DVaIdfVP------ 124 (181)
+||+|.|++|-.|+.+++.+.+.|.+|++... +...... ..++.++. + +.++.+ + |++|-+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~-d~vih~A~~~~~~~ 77 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIK--G-DVVFHFAANPEVRL 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCC--C-SEEEECCSSCSSSG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcC--C-CEEEECCCCCCchh
Confidence 47999999999999999999999999886432 2211100 01222221 2 233333 2 88887653
Q ss_pred ------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 ------------PPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 ------------p~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-..+..+++.|.++|++.+|.+++
T Consensus 78 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 113 (312)
T 3ko8_A 78 STTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS 113 (312)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 123456778888889988777564
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0048 Score=54.40 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=64.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCC-------------CCCC----------eE--EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-------------KKGG----------TE--HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP-------------~~~G----------~e--i~G--vPVy~--sl~ 108 (181)
.||.|.|+ |+.|+.+.+.+.+. ++++|+..|. .-.| +. +.| ++|+. +.+
T Consensus 3 ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~ 81 (342)
T 2ep7_A 3 IKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPS 81 (342)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999988875 8999987554 1111 11 223 56664 444
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++. .+.++|+++.+++.....+.+...+++|.+.|++
T Consensus 82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvi 119 (342)
T 2ep7_A 82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119 (342)
T ss_dssp GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEE
T ss_pred hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEe
Confidence 442 2237999999999999999999999999998876
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.029 Score=51.08 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-CC-eEee-ecCCCCCCe---EE--cCccc----------------------ccc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-GT-KMVG-GVTPKKGGT---EH--LGLPV----------------------FNS 106 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g~-~IVa-gVdP~~~G~---ei--~GvPV----------------------y~s 106 (181)
+.+||.|+|+ |.||......+.+. |+ ++++ .+|+.+.+. .+ ...|+ -++
T Consensus 17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd 95 (478)
T 3g79_A 17 PIKKIGVLGM-GYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD 95 (478)
T ss_dssp SCCEEEEECC-STTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence 4578999999 99999999999998 99 8774 455551110 01 11233 223
Q ss_pred HHHHhhccCCcEEEEeeChHH------------HHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHH
Q 030220 107 VAEAKAETKANASVIYVPPPF------------AAAAIMEAMEAE-LDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 107 l~e~~~~~~~DVaIdfVPp~~------------a~~~~~eaie~G-Ik~IV~iTtG~~~ed~~~l~ 159 (181)
.++.+ ++|++|++||... +..+++...++- -..+|+..+.++..-..++.
T Consensus 96 -~ea~~--~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~ 158 (478)
T 3g79_A 96 -FSRIS--ELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA 158 (478)
T ss_dssp -GGGGG--GCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHH
T ss_pred -HHHHh--cCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHH
Confidence 34444 6899999998753 555555555431 12244446677766555554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0061 Score=52.90 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=48.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-EcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-i~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
.+|.|+|+ |+.|+.+.+.+...|++++ +.||...... ..++ .|.+++|+++ +.|++++.+|-.
T Consensus 142 ~tvGIiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~-~~~~l~ell~--~sDivslh~Plt 205 (334)
T 3kb6_A 142 LTLGVIGT-GRIGSRVAMYGLAFGMKVL-CYDVVKREDLKEKGC-VYTSLDELLK--ESDVISLHVPYT 205 (334)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-EECCHHHHHH--HCSEEEECCCCC
T ss_pred cEEEEECc-chHHHHHHHhhcccCceee-ecCCccchhhhhcCc-eecCHHHHHh--hCCEEEEcCCCC
Confidence 56999999 9999999999999999988 5676543211 1222 4668999998 789999999853
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.046 Score=46.07 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=27.7
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
....+.+|+|.|++|-+|+.+++.+.+.|.+|++.
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~ 41 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIV 41 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 34556889999999999999999999999998864
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0052 Score=55.87 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=61.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E-----------------E---------cCccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-----------------H---------LGLPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e-----------------i---------~GvPVy~sl~e~ 110 (181)
.+||.|+|+ |.||..+...+.+.|++|+. .|++...- . + ..+....++++
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~l-~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGHQVLL-YDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA- 81 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEEE-ECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-
Confidence 357999999 99999999999999998763 44332110 0 0 12334556653
Q ss_pred hhccCCcEEEEeeChHH--HHHHHHHHHHc-CCCEEE-EeCCCCCHHHHH
Q 030220 111 KAETKANASVIYVPPPF--AAAAIMEAMEA-ELDLVV-CITEGIPQHDMV 156 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~--a~~~~~eaie~-GIk~IV-~iTtG~~~ed~~ 156 (181)
.+ ++|++|..+|.+. -+++..++.+. .-..|+ ..|.+++..++.
T Consensus 82 ~~--~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia 129 (483)
T 3mog_A 82 LA--AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIA 129 (483)
T ss_dssp GG--GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHT
T ss_pred hc--CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHH
Confidence 44 7999999999874 34565554443 223344 349999987544
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0048 Score=51.38 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=49.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
..+|+|+|+ |.||+.+...+.+.|.+|. .+|+.... ++ ..|+.+++++++..+ ++|++|.++|+...
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~~V~-v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGAKVF-LWNRTKEKAIKLAQKFPLEVVNSPEEVID--KVQVIVNTTSVGLK 199 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSHHHHHHHTTTSCEEECSCGGGTGG--GCSEEEECSSTTSS
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCCEEE-EEECCHHHHHHHHHHcCCeeehhHHhhhc--CCCEEEEeCCCCCC
Confidence 367999998 9999999999999888644 56654311 11 125667778877776 79999999998764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0071 Score=48.81 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCccccc-cHHHHhhccCCcEEEEeeCh-----HHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPVFN-SVAEAKAETKANASVIYVPP-----PFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvPVy~-sl~e~~~~~~~DVaIdfVPp-----~~a~ 129 (181)
++||+|.|+ |.+|+.+++.+.+.|.+|++..-.......+ .++.++. ++.++. -.++|++|.+..+ ....
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHHH
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHHH
Confidence 368999998 9999999999999999988653321100000 2332222 333321 2379999988754 2345
Q ss_pred HHHHHHHH--cCCCEEEEeC
Q 030220 130 AAIMEAME--AELDLVVCIT 147 (181)
Q Consensus 130 ~~~~eaie--~GIk~IV~iT 147 (181)
.+++.|.+ .|++.+|.++
T Consensus 83 ~l~~a~~~~~~~~~~~v~~S 102 (286)
T 3ius_A 83 ALGDQIAARAAQFRWVGYLS 102 (286)
T ss_dssp HHHHHHHHTGGGCSEEEEEE
T ss_pred HHHHHHHhhcCCceEEEEee
Confidence 56666666 6888877644
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0072 Score=51.34 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-eEE---cC--ccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LG--LPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~ei---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.++|.|+|+ |.||+.+.+.+.+. |++-|...|+.... +++ .+ +.++++++++.+ ++|+++.++|.. ..
T Consensus 135 ~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~--~aDiVi~atp~~--~~ 209 (312)
T 2i99_A 135 SEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVA--GADVIITVTLAT--EP 209 (312)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHT--TCSEEEECCCCS--SC
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHh--cCCEEEEEeCCC--Cc
Confidence 468999999 99999999988875 88655566655321 111 24 677889999887 799999999852 33
Q ss_pred HHH-HHHHcCCCEEEEeCCCCC
Q 030220 131 AIM-EAMEAELDLVVCITEGIP 151 (181)
Q Consensus 131 ~~~-eaie~GIk~IV~iTtG~~ 151 (181)
+++ +.++.|. .|+.+++.-+
T Consensus 210 v~~~~~l~~g~-~vi~~g~~~p 230 (312)
T 2i99_A 210 ILFGEWVKPGA-HINAVGASRP 230 (312)
T ss_dssp CBCGGGSCTTC-EEEECCCCST
T ss_pred ccCHHHcCCCc-EEEeCCCCCC
Confidence 333 3445553 4555444433
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.029 Score=46.34 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeecC-CCCCC-e---EE--cCcccc-------ccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGG-T---EH--LGLPVF-------NSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagVd-P~~~G-~---ei--~GvPVy-------~sl~e~~~~~~~DVaId 121 (181)
+++|+|.|++|-.|+.+++.+.+. |.+|++... +.... . ++ .++.++ .+++++++ ++|++|-
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih 81 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIVH 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh--cCCEEEE
Confidence 468999999999999999999987 888886432 21100 0 00 122111 23556666 6799988
Q ss_pred eeChH------------------HHHHHHHHHHHcCCCEEEEeC
Q 030220 122 YVPPP------------------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 122 fVPp~------------------~a~~~~~eaie~GIk~IV~iT 147 (181)
+.... ....+++.|.++|+ .+|.++
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~S 124 (348)
T 1oc2_A 82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVS 124 (348)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEE
T ss_pred CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEec
Confidence 76421 24567778888888 444434
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.044 Score=45.14 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---C---CeEeeecCCCCCC--eEE------cCcccc-------ccHHHHhhccCCc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---G---TKMVGGVTPKKGG--TEH------LGLPVF-------NSVAEAKAETKAN 117 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g---~~IVagVdP~~~G--~ei------~GvPVy-------~sl~e~~~~~~~D 117 (181)
+||+|.|++|..|+.+++.+.+. | .+|++.......+ ..+ .++.++ .+++++.. ++|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d 78 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVD 78 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--CCC
Confidence 37999999999999999999885 7 8888643211000 000 112111 13455554 799
Q ss_pred EEEEeeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 118 ASVIYVPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 118 VaIdfVPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++|-+... .....+++.|.+.|++.+|.+++
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS 127 (337)
T 1r6d_A 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (337)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 99887642 23456778888889988776553
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.039 Score=45.45 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
..+|+|+|+ |.+|+.+++.+...|..-+..+|+..
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 367999999 99999999999999985444666654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.058 Score=44.50 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=28.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 93 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~ 93 (181)
..+|+|+|+ |-+|+.+++.+...|..-+..+|+..
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 468999999 88999999999999987555666543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.012 Score=52.79 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-----E---------cC-----------ccccccHHHHhh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H---------LG-----------LPVFNSVAEAKA 112 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-----i---------~G-----------vPVy~sl~e~~~ 112 (181)
.++|.|+|+ |.||..+...+.+.|++|+ .+|+....-+ + .| ..+..+++ ..+
T Consensus 37 ~~kV~VIGa-G~MG~~iA~~la~~G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 113 (463)
T 1zcj_A 37 VSSVGVLGL-GTMGRGIAISFARVGISVV-AVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELS 113 (463)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGT
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHC
Confidence 467999999 9999999999988899876 4444321000 0 01 12345563 344
Q ss_pred ccCCcEEEEeeChHHH--HHHHHHHHHc---CCCEEEEeCCCCCHHHHHH
Q 030220 113 ETKANASVIYVPPPFA--AAAIMEAMEA---ELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a--~~~~~eaie~---GIk~IV~iTtG~~~ed~~~ 157 (181)
++|++|.+||.... .+++.++.+. +. .|+.-|.+++..++.+
T Consensus 114 --~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~-ii~snTs~~~~~~la~ 160 (463)
T 1zcj_A 114 --TVDLVVEAVFEDMNLKKKVFAELSALCKPGA-FLCTNTSALNVDDIAS 160 (463)
T ss_dssp --TCSEEEECCCSCHHHHHHHHHHHHHHSCTTC-EEEECCSSSCHHHHHT
T ss_pred --CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCe-EEEeCCCCcCHHHHHH
Confidence 79999999997642 3444443322 22 3333477887765443
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.068 Score=44.10 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCC----------C----eEE--cCccccccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG----------G----TEH--LGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~----------G----~ei--~GvPVy~sl~e~~~~~~~DVa 119 (181)
++++|+|.|++|-.|+.+++.+.+.|.+|++.+ ++... + -++ .++.=..+++++++ ++|++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~V 81 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK--GCTGV 81 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--TCSEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--CCCEE
Confidence 346799999999999999999999999988643 33310 0 000 12222234667766 78988
Q ss_pred EEeeC--------hH---------HHHHHHHHHHHcC-CCEEEEeCC
Q 030220 120 VIYVP--------PP---------FAAAAIMEAMEAE-LDLVVCITE 148 (181)
Q Consensus 120 IdfVP--------p~---------~a~~~~~eaie~G-Ik~IV~iTt 148 (181)
|-... +. ....+++.|.+++ ++.+|.+++
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS 128 (337)
T 2c29_D 82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128 (337)
T ss_dssp EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 86531 11 1345666777777 888887664
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.18 Score=40.00 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|-+|+.+++.+.+.|.+++. ++..... +++..++. ++. +..|...++.+.+++++
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVL-LDLPNSG-----------GEAQAKKLGNNCVFAPADVTSEKDVQTALAL 79 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EECTTSS-----------HHHHHHHHCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCCcHh-----------HHHHHHHhCCceEEEEcCCCCHHHHHHHHHH
Confidence 356999999999999999999999999774 3332211 11111111 222 23466777888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 80 ~~~~~g~id~li~-~Ag~ 96 (265)
T 2o23_A 80 AKGKFGRVDVAVN-CAGI 96 (265)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHCCCCCEEEE-CCcc
Confidence 7665 7888888 5553
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.041 Score=45.31 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=54.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|-+|+.+++.+.+.|.+++..-.... . .. -...+++. +...+ +..|.+.++.+.++++++
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~-~-~~-----~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA-E-GV-----APVIAELS-GLGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH-H-HH-----HHHHHHHH-HTTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH-H-HH-----HHHHHHHH-hcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45888899999999999999999999774321111 0 00 01112221 11222 344778888999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 102 ~~~~g~iD~lvn-nAg~ 117 (280)
T 4da9_A 102 VAEFGRIDCLVN-NAGI 117 (280)
T ss_dssp HHHHSCCCEEEE-ECC-
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 877 7899888 6665
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.058 Score=49.78 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=58.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe---EE-----cCcccc-------ccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EH-----LGLPVF-------NSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~---ei-----~GvPVy-------~sl~e~~~~~~~DVaId 121 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++... +..... ++ .++.++ .++++++++.++|++|-
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih 90 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 90 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEEE
Confidence 467999999999999999999999999886432 221100 00 112211 24556665447999988
Q ss_pred eeCh------------------HHHHHHHHHHHHcCCCEEEEeCC
Q 030220 122 YVPP------------------PFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 122 fVPp------------------~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+... .....+++.|.+.|++.+|.+++
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS 135 (699)
T 1z45_A 91 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 135 (699)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 7532 12345667777889988776553
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.028 Score=46.66 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=55.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-----CeEeeecC-CCCCCeEEcCccc-------cccHHHHhhccC-CcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-----TKMVGGVT-PKKGGTEHLGLPV-------FNSVAEAKAETK-ANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-----~~IVagVd-P~~~G~ei~GvPV-------y~sl~e~~~~~~-~DVaIdfVP 124 (181)
++|+|.|++|..|+.+++.+.+.| .+|++... +........++.+ ..+++++++..+ +|++|-+.-
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~ 81 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTW 81 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECCC
Confidence 579999999999999999999888 88886533 2211000012221 124566666333 999998743
Q ss_pred -----h--------HHHHHHHHHHHHc--CCCEEE
Q 030220 125 -----P--------PFAAAAIMEAMEA--ELDLVV 144 (181)
Q Consensus 125 -----p--------~~a~~~~~eaie~--GIk~IV 144 (181)
+ .....+++.|.++ |++.+|
T Consensus 82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v 116 (364)
T 2v6g_A 82 ANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116 (364)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCcchHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence 1 2356667777777 788876
|
| >1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.033 Score=49.63 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=30.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHH-----------------------hCCeEeee--cCCCCCCeE
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIE-----------------------YGTKMVGG--VTPKKGGTE 97 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~-----------------------~g~~IVag--VdP~~~G~e 97 (181)
.--...+||+|+|. |+.|+..++.+.. .+++|||+ ||+.+.|+.
T Consensus 10 ~~~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~ 78 (367)
T 1gr0_A 10 PEASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFD 78 (367)
T ss_dssp ----CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSB
T ss_pred chhccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHH
Confidence 34456789999999 9999977774443 25667885 778888853
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.056 Score=44.00 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=55.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec--CCCCCC--e------------EE--cCccccccHHHHhhccCCcEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKGG--T------------EH--LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV--dP~~~G--~------------ei--~GvPVy~sl~e~~~~~~~DVaI 120 (181)
++|+|.|++|.+|+.+++.+.+.|.+|++.+ ++.... . ++ .++-=..+++++++ ++|++|
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi 79 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIE--GCVGIF 79 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT--TCSEEE
T ss_pred CEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHc--CCCEEE
Confidence 5799999999999999999999999988654 432100 0 00 11111224666666 789888
Q ss_pred EeeCh-----------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030220 121 IYVPP-----------------PFAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 121 dfVPp-----------------~~a~~~~~eaie~-GIk~IV~iTt 148 (181)
-+..+ ..+..+++.|.++ |++.+|.+++
T Consensus 80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS 125 (322)
T 2p4h_X 80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSS 125 (322)
T ss_dssp ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence 76421 1133445566666 7888877554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.041 Score=43.38 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=61.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~e 134 (181)
+++++|.|++|-+|+.+++.+.+.|.+++. ++..... . -...+++.+....++ ..|.+.++.+.+++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALAL-GARSVDR--L-----EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKK 73 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHH
Confidence 456889999999999999999999999764 3332210 0 011122221112332 3467888888888888
Q ss_pred HHHc--CCCEEEEeCCCC---------CHHHHHHHHHHh
Q 030220 135 AMEA--ELDLVVCITEGI---------PQHDMVINFTRV 162 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~---------~~ed~~~l~~~a 162 (181)
+.+. ++..+|+ ..|+ +.++..++.+.-
T Consensus 74 ~~~~~g~id~li~-~Ag~~~~~~~~~~~~~~~~~~~~~N 111 (235)
T 3l77_A 74 VLERFGDVDVVVA-NAGLGYFKRLEELSEEEFHEMIEVN 111 (235)
T ss_dssp HHHHHSSCSEEEE-CCCCCCCCCTTTSCHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEE-CCccccccCcccCCHHHHHHHHHHH
Confidence 8776 7888888 6665 556665555443
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.1 Score=42.72 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecC-CCCCCe--EEcCcccc-----c---cHHHHhhccCCcEEEEee---
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGT--EHLGLPVF-----N---SVAEAKAETKANASVIYV--- 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVd-P~~~G~--ei~GvPVy-----~---sl~e~~~~~~~DVaIdfV--- 123 (181)
++|+|.|++|..|+.+++.+.+. |.+|++... +..... ...++.++ + .++++++ ++|++|-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~d~vih~A~~~ 78 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAIA 78 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc--CCCEEEEccccc
Confidence 37999999999999999999997 899886432 211000 00122111 1 2455555 689998753
Q ss_pred ChH---------------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 124 PPP---------------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 124 Pp~---------------~a~~~~~eaie~GIk~IV~iTt 148 (181)
.+. ....+++.|.+.| +.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS 117 (345)
T 2bll_A 79 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST 117 (345)
T ss_dssp CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred CccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence 211 2345677777888 66665564
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.023 Score=47.84 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC--CeEeeecCCCC--CCe---EEc--------Cccc-cccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK--GGT---EHL--------GLPV-FNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~~--~G~---ei~--------GvPV-y~sl~e~~~~~~~DVaIdf 122 (181)
+||+|+|+ |.||..+...+.+.| .+++ .+|... ... ++. .+.+ ..+. +..+ ++|++|++
T Consensus 2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~--~aDvViia 76 (309)
T 1hyh_A 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALA--DADVVIST 76 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGT--TCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhC--CCCEEEEe
Confidence 58999997 999999998888878 4554 455432 110 111 1233 3455 4445 79999999
Q ss_pred eChHH--------------------HHHHHHHHHHcCCCEE-EEeCCCC
Q 030220 123 VPPPF--------------------AAAAIMEAMEAELDLV-VCITEGI 150 (181)
Q Consensus 123 VPp~~--------------------a~~~~~eaie~GIk~I-V~iTtG~ 150 (181)
+++.. ..++++.+.+...+.+ +++|-+.
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~ 125 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcH
Confidence 99755 4677777777665544 4444433
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.065 Score=45.27 Aligned_cols=87 Identities=8% Similarity=-0.036 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCC--CeE---E----------cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG--GTE---H----------LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~--G~e---i----------~GvPVy~sl~e~~~~~~~DVaId 121 (181)
.+||+|+|+ |.||..+...+...|. +++ .+|.... ... + ..+....+. +..+ ++|++|+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~--~aDiVi~ 78 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADIS--GSDVVII 78 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT--TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC--CCCEEEE
Confidence 468999999 9999999998888887 743 5554431 110 0 012223455 4455 7999999
Q ss_pred ee--------------C--hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 122 YV--------------P--PPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 122 fV--------------P--p~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++ | .+...++++++.+..-..++++.+.
T Consensus 79 avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 79 TASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred eCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99 3 2345677777776655655543444
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.047 Score=43.36 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=53.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEcCccccccHHHHhhccCCcEEEEeeCh-------------
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPP------------- 125 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp------------- 125 (181)
+|+|.|++|.+|+.+++.+.+ |.+|++... +....+...++-=..+++++.+..++|++|.+...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~ 80 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKA 80 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHH
T ss_pred EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCHHHH
Confidence 699999999999999999885 888776422 21110011122222246666664469999987632
Q ss_pred -----HHHHHHHHHHHHcCCCEEEE
Q 030220 126 -----PFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 126 -----~~a~~~~~eaie~GIk~IV~ 145 (181)
.....+++.|.+.|++.|..
T Consensus 81 ~~~n~~~~~~l~~~~~~~~~~iv~~ 105 (273)
T 2ggs_A 81 YKINAEAVRHIVRAGKVIDSYIVHI 105 (273)
T ss_dssp HHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhHHHHHHHHHHHHHhCCeEEEE
Confidence 12566777788888754433
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.13 Score=41.84 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=56.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHh---hccCCc---EEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAK---AETKAN---ASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~---~~~~~D---VaIdfVPp~~a~~ 130 (181)
.++++|.|++|-+|+.+++.+.+.|.+++.. -++.... .+...+++.. ++...+ +..|.+.++.+.+
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANP------KLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCT------TSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhh------hhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 3568899999999999999999999997642 3332211 1112222221 111222 4457788899999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC
Q 030220 131 AIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 131 ~~~eaie~--GIk~IV~iTtG~ 150 (181)
+++++.+. ++..+|+ ..|+
T Consensus 80 ~~~~~~~~~g~iD~lvn-nAG~ 100 (274)
T 3e03_A 80 AVAATVDTFGGIDILVN-NASA 100 (274)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHcCCCCEEEE-CCCc
Confidence 99988876 7888888 6664
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0084 Score=53.23 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=61.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-----------CC------------Ce--EEcC--ccccc--cHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----------KG------------GT--EHLG--LPVFN--SVA 108 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-----------~~------------G~--ei~G--vPVy~--sl~ 108 (181)
..||.|.|+ |+.|+.+.+.+.+.+++||+.-|+. .. |+ .+.| ++|+. +.+
T Consensus 21 ~~kVaInGf-GrIGr~vlr~l~e~~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~dp~ 99 (356)
T 3hja_A 21 SMKLAINGF-GRIGRNVFKIAFERGIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERDPK 99 (356)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCChh
Confidence 478999999 9999999999888899999866553 00 01 1233 56665 355
Q ss_pred HHh-hccCCcEEEEeeChHHH----HHHHHHHHH-cCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFA----AAAIMEAME-AELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a----~~~~~eaie-~GIk~IV~ 145 (181)
+++ .+.++|+++.++..... .+-+...++ +|.+.||+
T Consensus 100 ~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVI 142 (356)
T 3hja_A 100 NLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVIL 142 (356)
T ss_dssp GCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEE
T ss_pred hCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEE
Confidence 442 23489999987765555 667777888 99998877
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.14 Score=41.95 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC--CeEeeecC-CCCCC-eEE------cCcccc-------ccHHHHhhccCCcEEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG--TKMVGGVT-PKKGG-TEH------LGLPVF-------NSVAEAKAETKANASVI 121 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g--~~IVagVd-P~~~G-~ei------~GvPVy-------~sl~e~~~~~~~DVaId 121 (181)
++|+|.|++|-+|+.+++.+.+.| .+|++... +.... ..+ .++.++ .++++++. ++|++|-
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih 81 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDGVVH 81 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCEEEE
Confidence 579999999999999999998875 88876422 11000 000 112111 13555554 7999988
Q ss_pred eeCh------------------HHHHHHHHHHHHcCC-CEEEEeCC
Q 030220 122 YVPP------------------PFAAAAIMEAMEAEL-DLVVCITE 148 (181)
Q Consensus 122 fVPp------------------~~a~~~~~eaie~GI-k~IV~iTt 148 (181)
+... .....+++.|.+.+. +.+|.+++
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVST 127 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 7542 124456777777775 46665453
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.082 Score=43.59 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-------CeEeeec-CCCCC----CeEE----cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGV-TPKKG----GTEH----LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-------~~IVagV-dP~~~----G~ei----~GvPVy~sl~e~~~~~~~DVaId 121 (181)
.++|+|.|++|-+|+.+++.+.+.| .+|++.. ++... +..+ .++.=..+++++++ .++|++|-
T Consensus 14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih 92 (342)
T 2hrz_A 14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVIFH 92 (342)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEEEE
Confidence 3679999999999999999999988 6777532 22211 1111 12222234566653 27999998
Q ss_pred eeChH-----------------HHHHHHHHHHHcC-----CCEEEEeC
Q 030220 122 YVPPP-----------------FAAAAIMEAMEAE-----LDLVVCIT 147 (181)
Q Consensus 122 fVPp~-----------------~a~~~~~eaie~G-----Ik~IV~iT 147 (181)
+.... ....+++.|.+.+ ++.+|.++
T Consensus 93 ~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 93 LAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred CCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 76421 1345566666666 77777655
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=94.72 E-value=0.026 Score=49.74 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=64.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC------------------CC-------e---EEcC--ccccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK------------------GG-------T---EHLG--LPVFN- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~------------------~G-------~---ei~G--vPVy~- 105 (181)
+.||.|-|+ |+.|+.+.+.+.+. +++||+..||.. .| . .+.| ++||.
T Consensus 3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e 81 (337)
T 3v1y_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence 368999999 99999999988875 789999877721 01 0 1122 56664
Q ss_pred -cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 -sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.++++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 123 (337)
T 3v1y_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI 123 (337)
T ss_dssp SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEE
T ss_pred cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence 455542 2348999999888888888888999999999887
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.07 Score=42.54 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=61.9
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAI 132 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~ 132 (181)
...++.+|+|.|++|-+|+.+++.+.+.|.+++...++..... ......+++.- .++. +..|.+.++.+.+++
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~ 82 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRR----VKWLEDQKALG--FDFYASEGNVGDWDSTKQAF 82 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSH----HHHHHHHHHTT--CCCEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHH----HHHHHHHHhcC--CeeEEEecCCCCHHHHHHHH
Confidence 4455677899999999999999999999999876543333210 01111111111 1222 334677888888888
Q ss_pred HHHHHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 133 MEAMEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+++.+. ++..+|+ ..|+ +.++..++.+.
T Consensus 83 ~~~~~~~g~id~lv~-~Ag~~~~~~~~~~~~~~~~~~~~v 121 (256)
T 3ezl_A 83 DKVKAEVGEIDVLVN-NAGITRDVVFRKMTREDWQAVIDT 121 (256)
T ss_dssp HHHHHHTCCEEEEEE-CCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEE-CCCCCCCCchhhCCHHHHHHHHHH
Confidence 888776 5777777 6554 44555555443
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.034 Score=46.39 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC--eEEcCccccc------cHHHHhhcc---CCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG--TEHLGLPVFN------SVAEAKAET---KANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G--~ei~GvPVy~------sl~e~~~~~---~~DVaIdfVPp 125 (181)
.++|+|.|++|..|+.+++.+.+.| .+|++........ ..+.++.+.. +++++.+.. ++|++|-+...
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~ 125 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC 125 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCcc
Confidence 3679999999999999999999998 8877643221110 0111222222 244454421 58999887532
Q ss_pred ----------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 ----------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 ----------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.+.|+ .+|.++
T Consensus 126 ~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~S 162 (357)
T 2x6t_A 126 SSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYAS 162 (357)
T ss_dssp CCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEc
Confidence 124667778888888 444434
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.058 Score=46.34 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=61.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCC--CCe---EE------cC----ccccccHHHHhhccCCcEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK--GGT---EH------LG----LPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~--~G~---ei------~G----vPVy~sl~e~~~~~~~DVaI 120 (181)
+.+||+|+|+ |.+|+.+...+...|+ + |..+|... ... ++ .+ +....++++.++ ++|++|
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~--~aDiVi 83 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCVI 83 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC--CCCEEE
Confidence 3468999999 9999998888888787 7 44555432 111 00 11 222457877776 899999
Q ss_pred Eee--Ch-------------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 121 IYV--PP-------------------PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 121 dfV--Pp-------------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
+.+ |. ....+.++.+.+..-..++++.|. |..-+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN-P~~~~ 138 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN-PLDCM 138 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS-SHHHH
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC-chHHH
Confidence 998 53 236778888888876766654544 44333
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.023 Score=49.02 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=58.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-C-CeEeeecCCCCCCeEEcC--ccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-G-TKMVGGVTPKKGGTEHLG--LPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g-~~IVagVdP~~~G~ei~G--vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
...+|++.|| |.-|....+.+.-. + ..-+.+.||.+.|..+.| +||++. +++ .+.++|.+++. ++....++.
T Consensus 318 ~gk~v~~yGa-~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~~~~g~~ipi~~p-~~~-~~~~~d~vl~~-~~~~~~ei~ 393 (416)
T 4e2x_A 318 EGRSVVGYGA-TAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPA-SAF-SDPYPDYALLF-AWNHAEEIM 393 (416)
T ss_dssp TTCCEEEECC-CSHHHHHHHHHTCCTTTSCCEEESCGGGTTEECTTTCCEEEEG-GGC-CSSCCSEEEES-CGGGHHHHH
T ss_pred cCCeEEEEcc-ccHHHHHHHhcCCCcceeeEEEeCCccccCccCCCCCCcCCCH-HHH-hhcCCCEEEEe-cchhHHHHH
Confidence 4568999999 77777665554332 2 223335679999988888 999973 443 33589988886 666677776
Q ss_pred H---HHHHcCCCEEEE
Q 030220 133 M---EAMEAELDLVVC 145 (181)
Q Consensus 133 ~---eaie~GIk~IV~ 145 (181)
+ +..+.|-+-|+-
T Consensus 394 ~~~~~~~~~g~~~~~~ 409 (416)
T 4e2x_A 394 AKEQEFHQAGGRWILY 409 (416)
T ss_dssp HHCHHHHHTTCEEEEC
T ss_pred HHHHHHHhcCCEEEEE
Confidence 5 444778888775
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.16 Score=41.15 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|.+|+.+++.+.+.|.+++....... . .-..+.+..++...+ +..|...++.+.++++++
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 30 KNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA-E-------VADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-H-------HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH-H-------HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 56888999999999999999999999774322111 1 011122222222223 234677888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 102 ~~~~g~id~li~-nAg~ 117 (271)
T 4iin_A 102 VQSDGGLSYLVN-NAGV 117 (271)
T ss_dssp HHHHSSCCEEEE-CCCC
T ss_pred HHhcCCCCEEEE-CCCc
Confidence 776 7888888 6665
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.13 Score=40.23 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc--EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN--ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D--VaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|.+|+.+++.+.+.|.+++...+..... .. .+ .+++.+. .++. +..|...++.+.++++++
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREK--AE--EV---AEEARRRGSPLVAVLGANLLEAEAATALVHQA 74 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHH--HH--HH---HHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--HH--HH---HHHHHhcCCceEEEEeccCCCHHHHHHHHHHH
Confidence 4688999999999999999999999988643443211 10 01 1111111 1221 344777888888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~~d~li~-~Ag~ 90 (245)
T 2ph3_A 75 AEVLGGLDTLVN-NAGI 90 (245)
T ss_dssp HHHHTCCCEEEE-CCCC
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 764 7899988 5554
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.097 Score=42.05 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=49.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|.+|+.+++.+.+.|.+|+.. .++..... ....+| ...++.+.++++++.+
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~---------------~~~~~d----~~d~~~v~~~~~~~~~ 83 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD---------------HSFTIK----DSGEEEIKSVIEKINS 83 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS---------------EEEECS----CSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc---------------cceEEE----eCCHHHHHHHHHHHHH
Confidence 468888999999999999999999997642 33322110 011233 5677888888888877
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 84 ~~g~iD~li~-~Ag~ 97 (251)
T 3orf_A 84 KSIKVDTFVC-AAGG 97 (251)
T ss_dssp TTCCEEEEEE-CCCC
T ss_pred HcCCCCEEEE-CCcc
Confidence 5 4666776 6663
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.0093 Score=56.59 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=58.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--------------cC-------------ccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--------------LG-------------LPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--------------~G-------------vPVy~sl~e~ 110 (181)
.+||.|+|+ |.||..+...+.+.|++|+ .+|+....-+- .| +....++ +.
T Consensus 314 i~kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~ 390 (715)
T 1wdk_A 314 VKQAAVLGA-GIMGGGIAYQSASKGTPIL-MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GD 390 (715)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred CCEEEEECC-ChhhHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence 467999999 9999999999999999876 34433211000 11 2334455 44
Q ss_pred hhccCCcEEEEeeChHH--HHHHHHHHHHcCCC--EEE-EeCCCCCHHHHH
Q 030220 111 KAETKANASVIYVPPPF--AAAAIMEAMEAELD--LVV-CITEGIPQHDMV 156 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~--a~~~~~eaie~GIk--~IV-~iTtG~~~ed~~ 156 (181)
.+ ++|++|..||.+. -+++..+ ++..++ .|+ ..|++++..++.
T Consensus 391 ~~--~aDlVIeaV~e~~~vk~~v~~~-l~~~~~~~~IlasntStl~i~~la 438 (715)
T 1wdk_A 391 FG--NVDLVVEAVVENPKVKQAVLAE-VENHVREDAILASNTSTISISLLA 438 (715)
T ss_dssp GG--GCSEEEECCCSCHHHHHHHHHH-HHTTSCTTCEEEECCSSSCHHHHG
T ss_pred HC--CCCEEEEcCCCCHHHHHHHHHH-HHhhCCCCeEEEeCCCCCCHHHHH
Confidence 44 7999999999654 3344444 333332 233 348899987543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.11 Score=46.63 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=69.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE--cCccccc-cHHHHhhc-------------cCCcEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH--LGLPVFN-SVAEAKAE-------------TKANASV 120 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei--~GvPVy~-sl~e~~~~-------------~~~DVaI 120 (181)
-.|.-|+|. |.||......+.+.|+++++ .+|+.+.. ++ ...|+|. .++|++++ .++|+++
T Consensus 11 ~~~~~ViGl-GyvGlp~A~~La~~G~~V~~~D~~~~kv~-~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 11 GSKLTVVGL-GYIGLPTSIMFAKHGVDVLGVDINQQTID-KLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp -CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred CCccEEEee-CHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 467889999 99999999999999999874 35554432 12 2367776 35554321 2689999
Q ss_pred EeeChHH------------HHHHHHHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 121 IYVPPPF------------AAAAIMEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 121 dfVPp~~------------a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
++||... +..+++...+. .-..+|+..+.++..-.+++.+.
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~ 142 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKP 142 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHH
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHH
Confidence 9999765 66666665553 22345555788988887777554
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.024 Score=50.03 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC--------------C---eE---------EcC--ccccc--c
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG--------------G---TE---------HLG--LPVFN--S 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~--------------G---~e---------i~G--vPVy~--s 106 (181)
..||.|-|+ |+.||.+.+.+.+. +++||+.-||... | .+ +.| ++|+. +
T Consensus 11 ~~kv~INGf-GrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d 89 (345)
T 2b4r_O 11 ATKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 89 (345)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred heEEEEeCC-chHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence 468999999 99999999987774 8999987663211 1 01 122 45554 3
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+++. .+.++|+++.+++.....+.+...+++|.+.||+
T Consensus 90 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVI 129 (345)
T 2b4r_O 90 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 129 (345)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred cccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEE
Confidence 44442 2237999999988888888888899999998877
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.09 Score=41.73 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEE-cCccccccHHHHhhcc--CCcEEEEeeChH--------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEH-LGLPVFNSVAEAKAET--KANASVIYVPPP-------- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei-~GvPVy~sl~e~~~~~--~~DVaIdfVPp~-------- 126 (181)
++|+|.|++|-+|+.+++.+.+.|.+|+.. -++......+ .++--..+++++.++. ++|++|-..-..
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~ 81 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN 81 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence 468999999999999999999999997753 3332211000 1111122455555533 579988764211
Q ss_pred -------H----HHHHHHHHHHcCCCEEEEeCCC
Q 030220 127 -------F----AAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 127 -------~----a~~~~~eaie~GIk~IV~iTtG 149 (181)
. ++.++..+.+.+...||++++.
T Consensus 82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 115 (257)
T 1fjh_A 82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSV 115 (257)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence 1 2222333335677788887753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.41 Score=39.39 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++.. +..... --..+.+..++...++ ..|...++.+.+++++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~-~r~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIA-YLDEEG-------DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSCHH-------HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCCchH-------HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 3568999999999999999999999997642 322211 0012223233223333 3467788888888888
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 119 ~~~~~g~iD~lvn-nAg 134 (291)
T 3ijr_A 119 TVRQLGSLNILVN-NVA 134 (291)
T ss_dssp HHHHHSSCCEEEE-CCC
T ss_pred HHHHcCCCCEEEE-CCC
Confidence 8876 7888888 444
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.23 Score=39.81 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=60.5
Q ss_pred CceEEEEccCC-CCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITG-KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatG-kmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ 133 (181)
..+++|.|++| -+|+.+++.+.+.|.+++. ++..... . -...+++.+.. ++. +..|...++.+.++++
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVI-SDYHERR--L-----GETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEE-ecCCHHH--H-----HHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 45689999998 5999999999999999774 3332210 0 01122221111 222 3356778888888888
Q ss_pred HHHHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 134 EAMEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
++.+. ++..+|+ ..|+ +.++..++.+.
T Consensus 94 ~~~~~~g~id~li~-~Ag~~~~~~~~~~~~~~~~~~~~~ 131 (266)
T 3o38_A 94 QTVEKAGRLDVLVN-NAGLGGQTPVVDMTDEEWDRVLNV 131 (266)
T ss_dssp HHHHHHSCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEE-CCCcCCCCCcccCCHHHHHHHHHH
Confidence 88876 7888888 6665 45555554443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.091 Score=41.12 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=41.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEc---CccccccHHHHhhcc--CCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---GLPVFNSVAEAKAET--KANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~---GvPVy~sl~e~~~~~--~~DVaIdfV 123 (181)
++|+|.|++|-+|+.+++.+.+.|.+|++. +......+.. ++--..+++++.++. ++|++|-..
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~A 70 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGI-DRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCA 70 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEE-eCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECC
Confidence 469999999999999999999999997754 3222111110 111112355555433 789998754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.2 Score=40.26 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.+.. .+++..++. ++ -+..|.+.++.+.++++++
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAI-ADIDIE-----------RARQAAAEIGPAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHH
Confidence 56899999999999999999999999764 333210 111221111 12 1345777888889998888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 77 ~~~~g~id~lv~-~Ag~ 92 (259)
T 4e6p_A 77 VEHAGGLDILVN-NAAL 92 (259)
T ss_dssp HHHSSSCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 876 7888888 6665
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.15 Score=43.07 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=63.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
+.|+|.|++|-+|+.+++.+.+.|.++++... +.....+ -...+.+..+....+ +..|.+.++.+.+++++
T Consensus 6 k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~-----~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 6 KIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNAS-----NVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHH-----HHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHH-----HHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 46888899999999999999999999886432 2111100 111222222222222 34567788889999998
Q ss_pred HHHc--CCCEEEEeCCCC---------CHHHHHHHHHHh
Q 030220 135 AMEA--ELDLVVCITEGI---------PQHDMVINFTRV 162 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~---------~~ed~~~l~~~a 162 (181)
+.+. ++..+|+ ..|+ +.++..++.+.-
T Consensus 81 ~~~~~g~iD~lVn-nAG~~~~~~~~~~~~~~~~~~~~vN 118 (324)
T 3u9l_A 81 IIGEDGRIDVLIH-NAGHMVFGPAEAFTPEQFAELYDIN 118 (324)
T ss_dssp HHHHHSCCSEEEE-CCCCCBCSCGGGSCHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEE-CCCcCCCCChhhCCHHHHHHHHHHH
Confidence 8876 7999998 6664 556655555443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.023 Score=54.02 Aligned_cols=96 Identities=13% Similarity=-0.041 Sum_probs=58.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe----------------EE---------cCccccccHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT----------------EH---------LGLPVFNSVAEA 110 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~----------------ei---------~GvPVy~sl~e~ 110 (181)
+.+||.|+|+ |.||..+...+.+.|++|+. .+++..... .+ ..+....+++ .
T Consensus 311 ~~~kV~VIGa-G~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~ 388 (725)
T 2wtb_A 311 KIKKVAIIGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-S 388 (725)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-G
T ss_pred cCcEEEEEcC-CHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-H
Confidence 3468999999 99999999999988999763 233321100 00 0123344563 4
Q ss_pred hhccCCcEEEEeeChHHH--HHHHHHHHHc-CCCEEE-EeCCCCCHHHHH
Q 030220 111 KAETKANASVIYVPPPFA--AAAIMEAMEA-ELDLVV-CITEGIPQHDMV 156 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a--~~~~~eaie~-GIk~IV-~iTtG~~~ed~~ 156 (181)
.+ ++|++|..||.+.. +++..+..+. .-..|+ ..|++++..++.
T Consensus 389 ~~--~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la 436 (725)
T 2wtb_A 389 FR--DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIG 436 (725)
T ss_dssp GT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHT
T ss_pred HC--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHH
Confidence 45 79999999998762 3444443322 112233 348899887543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.22 Score=39.66 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
..+++|.|++|-+|+.+++.+.+.|.+++. ++.... .++++.++. ++ -+..|.+.++.+.+++++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVI-VDRDKA-----------GAERVAGEIGDAALAVAADISKEADVDAAVEA 76 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999764 343221 112222111 11 244567788888999988
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 77 ~~~~~g~id~li~-~Ag~ 93 (261)
T 3n74_A 77 ALSKFGKVDILVN-NAGI 93 (261)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHhcCCCCEEEE-CCcc
Confidence 8876 7888888 6554
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.026 Score=49.67 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=63.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCC-------------C----------eE--EcC--ccccc--c
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------G----------TE--HLG--LPVFN--S 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~-------------G----------~e--i~G--vPVy~--s 106 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..||... | +. +.| ++|+. +
T Consensus 3 ~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 81 (335)
T 3doc_A 3 VRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVRN 81 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCSS
T ss_pred EEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeecc
Confidence 58999999 99999999987775 6889987776320 1 00 123 56663 3
Q ss_pred HHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 VAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 l~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.++++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 82 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (335)
T 3doc_A 82 PAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIV 121 (335)
T ss_dssp TTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred cccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEE
Confidence 44443 2347999999888888888888899999999887
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.14 Score=43.77 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEee-ecCCCCCCe--EEc--Cc--ccc-----ccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVG-GVTPKKGGT--EHL--GL--PVF-----NSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVa-gVdP~~~G~--ei~--Gv--PVy-----~sl~e~~~~~~~DVaIdfV 123 (181)
.+||+|+|++|..|+.....+.+.| .+|+. .+++. .+. ++. .. .+. .+++++.+ ++|++|++.
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~a 84 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVPA 84 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 4689999988999998888777766 56654 23343 110 011 11 121 25666666 899999987
Q ss_pred C--h--------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 124 P--P--------------PFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 124 P--p--------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
+ . ..+.++++.+.+.+.+.++.+.+ -|..-
T Consensus 85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S-NPv~~ 130 (326)
T 1smk_A 85 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS-NPVNS 130 (326)
T ss_dssp CCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC-SSHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC-CchHH
Confidence 4 1 45778888888889887766565 46655
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.023 Score=50.26 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=65.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC-------------C----------e--EEcC--ccccc--cH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-------------G----------T--EHLG--LPVFN--SV 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~-------------G----------~--ei~G--vPVy~--sl 107 (181)
+.||.|-|+ |+.|+.+.+.+.+. +++||+..||... | + .+.| ++||. +.
T Consensus 4 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp 82 (345)
T 4dib_A 4 MTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDP 82 (345)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSCG
T ss_pred cEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCCh
Confidence 579999999 99999999988875 7999997776321 0 0 0223 56664 45
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (345)
T 4dib_A 83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVIL 121 (345)
T ss_dssp GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEE
Confidence 5553 2347999999888878888888899999999887
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.045 Score=48.54 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCC----------------------------CCeEE--cCcc-
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKK----------------------------GGTEH--LGLP- 102 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~----------------------------~G~ei--~GvP- 102 (181)
++++|+|.|++|-+|+.+++.+.+. |.+|++.+-... .+-++ .++-
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~ 151 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE 151 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence 4678999999999999999999997 889887543211 01011 1111
Q ss_pred -----ccccHHHHhhccCCcEEEEeeC--------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 103 -----VFNSVAEAKAETKANASVIYVP--------------PPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 103 -----Vy~sl~e~~~~~~~DVaIdfVP--------------p~~a~~~~~eaie~GIk~IV~iTt 148 (181)
-..+++++.+ ++|++|-+.- -.....+++.|.+.|++.+|.+++
T Consensus 152 ~~~gld~~~~~~~~~--~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 152 PDLGLDQPMWRRLAE--TVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp GGGGCCHHHHHHHHH--HCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred cccCCCHHHHHHHHc--CCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 1113455555 7899886642 235677888888889877666564
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.23 Score=39.65 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=54.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|.+|+.+++.+.+.|.+++.. +.+.. .+++..++..+. +..|...++.+.++++++.
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~-~r~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGARLVAC-DIEEG-----------PLREAAEAVGAHPVVMDVADPASVERGFAEAL 72 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ESCHH-----------HHHHHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-eCCHH-----------HHHHHHHHcCCEEEEecCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999997743 32210 122222211222 2346677888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 73 ~~~g~id~lvn-~Ag~ 87 (245)
T 1uls_A 73 AHLGRLDGVVH-YAGI 87 (245)
T ss_dssp HHHSSCCEEEE-CCCC
T ss_pred HHcCCCCEEEE-CCCC
Confidence 65 6888888 6664
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.29 Score=39.12 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=53.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.... .+ ..+++.+ ...++ ..|...++.+.++++++
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~-~~r~~~-~~--------~~~~l~~-~~~~~~~~~~D~~~~~~v~~~~~~~ 73 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVL-NGFGDP-AP--------ALAEIAR-HGVKAVHHPADLSDVAQIEALFALA 73 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEE-ECSSCC-HH--------HHHHHHT-TSCCEEEECCCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCch-HH--------HHHHHHh-cCCceEEEeCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999774 343321 00 1122211 12222 24567778888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 74 ~~~~g~id~lv~-~Ag~ 89 (255)
T 2q2v_A 74 EREFGGVDILVN-NAGI 89 (255)
T ss_dssp HHHHSSCSEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 766 7999998 6554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.23 Score=39.37 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC---cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~---DVaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|.+|+.+++.+.+.|.+++. ++..... .. .+ .+++.+ ... -+..|...++.+.+.+++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~-~~r~~~~--~~--~~---~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVV-ADINAEA--AE--AV---AKQIVA-DGGTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HH---HHHHHH-TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE-EcCCHHH--HH--HH---HHHHHh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 356889999999999999999999999764 3432211 00 11 112111 111 234577788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 80 ~~~~~g~id~li~-~Ag~ 96 (253)
T 3qiv_A 80 TLAEFGGIDYLVN-NAAI 96 (253)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 8776 7898988 6665
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.056 Score=47.46 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCC-eEE---cCccc--cccHHHHhhccCCcEEEEeeChHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG-TEH---LGLPV--FNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G-~ei---~GvPV--y~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+..+|+|+|+ |.||+.+.+.+...|. +|+ .+|+.... +++ .|..+ +.++.+... ++|++|+++|.....
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~-v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~--~aDvVi~at~~~~~~ 241 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVL-VANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPHPV 241 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEE-EECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSSCC
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHcCCceecHHhHHHHhc--CCCEEEEccCCCCce
Confidence 4578999999 9999999999998998 555 56654311 011 13333 356777776 799999999865432
Q ss_pred ---HHHHH-HHH---cCCCEEEEeCC
Q 030220 130 ---AAIME-AME---AELDLVVCITE 148 (181)
Q Consensus 130 ---~~~~e-aie---~GIk~IV~iTt 148 (181)
+.++. +++ .|-..++.++.
T Consensus 242 ~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 242 IHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ecHHHHHHHHHhccCCCCEEEEEccC
Confidence 34444 343 24344566544
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.15 Score=40.73 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
+.+++|.|++|-+|+.+++.+.+.|.+++......... -..+.+..++. ++. +..|...++.+.+++++
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 78 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTA--------METMKETYKDVEERLQFVQADVTKKEDLHKIVEE 78 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--------HHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHH--------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 35688889999999999999999999987542322110 01122222211 122 34567888889999988
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 79 ~~~~~g~id~lv~-~Ag 94 (264)
T 3i4f_A 79 AMSHFGKIDFLIN-NAG 94 (264)
T ss_dssp HHHHHSCCCEEEC-CCC
T ss_pred HHHHhCCCCEEEE-CCc
Confidence 8876 7888888 666
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.1 Score=42.55 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++..... .-...+++.+....+ +..|.+.++.+.+++++
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~-~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 98 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVI-ASRSLPR-------VLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQ 98 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEE-EESCHHH-------HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH-------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999774 3332211 001122221111222 33577888899999998
Q ss_pred HHHc--CCCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 135 AMEA--ELDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 135 aie~--GIk~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
+.+. ++..+|+ ..| ++.++..++.+.
T Consensus 99 ~~~~~g~id~lv~-nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 99 ALKEFGRIDILIN-CAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp HHHHHSCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEE-CCcCCCCCCcccCCHHHHHHHHHH
Confidence 8876 7898988 655 355555554443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.19 Score=40.59 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=62.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCccccccHHHH---hhccCCc---EEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLPVFNSVAEA---KAETKAN---ASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvPVy~sl~e~---~~~~~~D---VaIdfVPp~~a~~ 130 (181)
.++|+|.|++|-+|+.+++.+.+.|.+++. +.++.....+. ...--..+++. .+....+ +..|...++.+.+
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEY-PLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCS-CCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccccccccccc-chhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 356899999999999999999999999764 23322211110 00001112222 1111222 3457788889999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC-------CHHHHHHHHHH
Q 030220 131 AIMEAMEA--ELDLVVCITEGI-------PQHDMVINFTR 161 (181)
Q Consensus 131 ~~~eaie~--GIk~IV~iTtG~-------~~ed~~~l~~~ 161 (181)
.++++.+. ++..+|+ ..|+ +.++..+..+.
T Consensus 89 ~~~~~~~~~g~id~lv~-nAg~~~~~~~~~~~~~~~~~~~ 127 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVA-NAGICPLGAHLPVQAFADAFDV 127 (287)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCCCCCCTTCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEE-CCCcCcccCcCCHHHHHHHhhh
Confidence 99988876 7888888 6554 45555554443
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.13 Score=44.66 Aligned_cols=87 Identities=11% Similarity=-0.016 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---------------------------E-cCc--cccc-c
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------------------H-LGL--PVFN-S 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---------------------------i-~Gv--PVy~-s 106 (181)
..+|+|+|+ |-.|..+++++...|..-+-.+|+...... + .++ .+++ .
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 478999999 999999999999999864445554432100 0 111 1222 1
Q ss_pred ----HHHHhhccCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeC
Q 030220 107 ----VAEAKAETKANASVIYVPPPFAAA-AIMEAMEAELDLVVCIT 147 (181)
Q Consensus 107 ----l~e~~~~~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iT 147 (181)
.+++++ ++|++|+++-...+.. +-+.|.+++++.|.+-+
T Consensus 115 ~~~~~~~~~~--~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~ 158 (346)
T 1y8q_A 115 IEKKPESFFT--QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDV 158 (346)
T ss_dssp GGGCCHHHHT--TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCcchHHHhc--CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 244444 6788888775555444 34455667887776533
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.12 Score=42.34 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=54.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|-+|+.+++.+.+.|.+|+. ++.... .+++..++. ++. +..|.+.++.+.++++++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 96 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGYGVAL-AGRRLD-----------ALQETAAEIGDDALCVPTDVTDPDSVRALFTAT 96 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Confidence 45777899999999999999999999764 333210 112222111 222 345778889999999888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 97 ~~~~g~iD~lVn-nAg~ 112 (272)
T 4dyv_A 97 VEKFGRVDVLFN-NAGT 112 (272)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 876 7888888 6554
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.32 Score=38.92 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.+.. .+++..++...+ +..|.+.++.+.++++++
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 74 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIV-SDINAE-----------GAKAAAASIGKKARAIAADISDPGSVKALFAEI 74 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-ECSCHH-----------HHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999774 343321 111221111111 234667888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 75 ~~~~g~id~lv~-nAg~ 90 (247)
T 3rwb_A 75 QALTGGIDILVN-NASI 90 (247)
T ss_dssp HHHHSCCSEEEE-CCCC
T ss_pred HHHCCCCCEEEE-CCCC
Confidence 876 7888888 6554
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.033 Score=44.98 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=53.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCCe---EEcCccccc------cHHHHhhc---cCCcEEEEeeChH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---EHLGLPVFN------SVAEAKAE---TKANASVIYVPPP 126 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G~---ei~GvPVy~------sl~e~~~~---~~~DVaIdfVPp~ 126 (181)
+|+|.|++|.+|+.+++.+.+.| .+|++... ..... .+.++.+.. +++++.+. .++|++|-+....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 79 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDN-LKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEEC-CSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEcc-CCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcccc
Confidence 58999999999999999999988 78775432 22111 111222222 24455542 1499999875321
Q ss_pred ----------------HHHHHHHHHHHcCCCEEEEeC
Q 030220 127 ----------------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 127 ----------------~a~~~~~eaie~GIk~IV~iT 147 (181)
....+++.|.++|+ .+|.++
T Consensus 80 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~S 115 (310)
T 1eq2_A 80 STTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYAS 115 (310)
T ss_dssp CTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 24667778888899 444434
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.27 Score=39.85 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=50.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|+.. .++.. + . ++. +..|...++.+.++++++
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~----------------~--~~~~~~~Dl~~~~~v~~~~~~~ 68 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-E----------------A--KYDHIECDVTNPDQVKASIDHI 68 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-S----------------C--SSEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-C----------------C--ceEEEEecCCCHHHHHHHHHHH
Confidence 3568999999999999999999999997743 22222 1 0 111 223455677777777777
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 69 ~~~~g~iD~lv~-~Ag~ 84 (264)
T 2dtx_A 69 FKEYGSISVLVN-NAGI 84 (264)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 665 6888888 5554
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.026 Score=50.10 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=61.9
Q ss_pred ceEEEEccCCCCcchhhHH----HHHh-CCeEeeecCCCC--------------------------------CCeE--Ec
Q 030220 59 TRVICQGITGKNGTFHTEQ----AIEY-GTKMVGGVTPKK--------------------------------GGTE--HL 99 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~----~~~~-g~~IVagVdP~~--------------------------------~G~e--i~ 99 (181)
.||.|-|+ |+.|+.+.+. +.+. +++||+..||.. .++. +.
T Consensus 3 ~kv~INGF-GrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~in 81 (359)
T 3ids_C 3 IKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVN 81 (359)
T ss_dssp EEEEEECT-THHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEEET
T ss_pred eEEEEECC-ChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEEEC
Confidence 58999999 9999999998 4443 688998877621 1111 22
Q ss_pred C--ccccc---cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 100 G--LPVFN---SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 100 G--vPVy~---sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
| ++|+. +.++++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 82 Gk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViI 133 (359)
T 3ids_C 82 GHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI 133 (359)
T ss_dssp TEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEE
T ss_pred CEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence 3 56664 444432 2347999999888877888888889999998887
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.24 Score=38.98 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=52.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC-CCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~-~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
++|+|.|++|-+|+.+++.+.+.|.+|+.. +.. ... .. ...+++.. ...+ +..|...++.+.+++++
T Consensus 8 k~vlVTGasggiG~~~a~~l~~~G~~V~~~-~r~~~~~--~~-----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 78 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFARAGAKVGLH-GRKAPAN--ID-----ETIASMRA-DGGDAAFFAADLATSEACQQLVDE 78 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEE-ESSCCTT--HH-----HHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEE-CCCchhh--HH-----HHHHHHHh-cCCceEEEECCCCCHHHHHHHHHH
Confidence 568999999999999999999999997753 322 111 00 01122211 1112 23466777888888877
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 79 ~~~~~g~id~vi~-~Ag~ 95 (258)
T 3afn_B 79 FVAKFGGIDVLIN-NAGG 95 (258)
T ss_dssp HHHHHSSCSEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7665 7999998 5554
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.2 Score=40.81 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=54.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
.+.++|+|.|++|-+|+.+++.+.+.|.+++. ++..... ..+ .. .-+..|.+.++.+.++++++
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~-~~r~~~~--~~~---------~~----~~~~~Dv~~~~~v~~~~~~~ 75 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVS-VSLDEKS--DVN---------VS----DHFKIDVTNEEEVKEAVEKT 75 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE-EESCC----CTT---------SS----EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCchh--ccC---------ce----eEEEecCCCHHHHHHHHHHH
Confidence 34567888899999999999999999999774 3322211 110 00 11335667888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 76 ~~~~g~iD~lv~-nAg~ 91 (269)
T 3vtz_A 76 TKKYGRIDILVN-NAGI 91 (269)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 876 7888888 6664
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.23 Score=39.11 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=52.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEe--eChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIY--VPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdf--VPp~~a~~~~ 132 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++..... .. .+ .+++.+....+ +.++. ..++.+.+++
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVVL-LGRTEAS--LA--EV---SDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HH---HHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EecCHHH--HH--HH---HHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 356889999999999999999999999764 3432210 00 11 12221111122 22233 6677788888
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030220 133 MEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~ 150 (181)
+++.+. ++..+|+ ..|+
T Consensus 86 ~~~~~~~g~id~lv~-nAg~ 104 (247)
T 3i1j_A 86 ARVEHEFGRLDGLLH-NASI 104 (247)
T ss_dssp HHHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHhCCCCCEEEE-CCcc
Confidence 877765 7888888 5554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.24 Score=42.45 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=57.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
.+.|+|.|++|-+|+.+++.+.+.|.+|+.. -++.... +..+ .++...+++ ++...+ +..|...++.+.++++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~-~l~~-~l~~~~~~~-~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHP-KLLG-TIYTAAEEI-EAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCS-SSCC-CHHHHHHHH-HHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhh-hhHH-HHHHHHHHH-HhcCCeEEEEEccCCCHHHHHHHHH
Confidence 3568899999999999999999999997743 3332211 1100 112222222 211222 3357788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 122 ~~~~~~g~iDilVn-nAG~ 139 (346)
T 3kvo_A 122 KAIKKFGGIDILVN-NASA 139 (346)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 99887 8999998 5553
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.2 Score=42.95 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=60.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCC--Ce---EE-c-------C--ccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG--GT---EH-L-------G--LPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~--G~---ei-~-------G--vPVy~sl~e~~~~~~~DVaIdf 122 (181)
+||.|+|+ |.||..+...+...|+ + |..+|.... .. ++ . . +....+. +.++ ++|++|+.
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~--~aD~VI~a 89 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQ--NSDVVIIT 89 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT--TCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHC--CCCEEEEc
Confidence 58999999 9999998888887787 7 445554331 11 01 0 1 2222455 4455 79999999
Q ss_pred e--Ch--------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 123 V--PP--------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 123 V--Pp--------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
+ |. +...++++++.+..-..++++.+. |..-+.++
T Consensus 90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN-P~~~~t~~ 140 (328)
T 2hjr_A 90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN-PLDAMVYY 140 (328)
T ss_dssp CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS-SHHHHHHH
T ss_pred CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC-chHHHHHH
Confidence 8 43 446777777777776666554555 55544443
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.21 Score=41.39 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=62.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.|.+|+. ++..... . -...+++.+ ...+ +..|.+.++.+.+++++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLVL-SDVDQPA--L-----EQAVNGLRG-QGFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--H-----HHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHH
Confidence 356999999999999999999999999774 3332211 0 011122211 1222 34577888888888888
Q ss_pred HHHc--CCCEEEEeCCCC---------CHHHHHHHHHHh
Q 030220 135 AMEA--ELDLVVCITEGI---------PQHDMVINFTRV 162 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~---------~~ed~~~l~~~a 162 (181)
+.+. ++..+|+ ..|+ +.++..++.+.-
T Consensus 102 ~~~~~g~id~lvn-nAg~~~~~~~~~~~~~~~~~~~~vN 139 (301)
T 3tjr_A 102 AFRLLGGVDVVFS-NAGIVVAGPLAQMNHDDWRWVIDID 139 (301)
T ss_dssp HHHHHSSCSEEEE-CCCCCCCBCGGGCCHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEE-CCCcCCCCCcccCCHHHHHHHHHhh
Confidence 8876 7899998 6664 556655555443
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.19 Score=39.80 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=53.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|.+|+.+++.+.+.|.+|+.. +..... . ... ++++.++...+ +..|...++.+.+++++
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~-~r~~~~--~--~~~---~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 85 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVI-YRSAAD--A--VEV---TEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQ 85 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEE-ESSCTT--H--HHH---HHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEE-eCcchh--h--HHH---HHHHHHhcCCeeEEEEeeCCCHHHHHHHHHH
Confidence 3579999999999999999999999987743 332211 0 011 22222211222 33466778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. .+..+|+ ..|+
T Consensus 86 ~~~~~~~id~li~-~Ag~ 102 (265)
T 1h5q_A 86 IDADLGPISGLIA-NAGV 102 (265)
T ss_dssp HHHHSCSEEEEEE-CCCC
T ss_pred HHHhcCCCCEEEE-CCCc
Confidence 7654 3666777 6554
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.25 Score=40.50 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=60.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.... .++++.++. ++ -+..|.+.++.+.++++++
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGAYVVV-ADVNED-----------AAVRVANEIGSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESSHH-----------HHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 56888899999999999999999999774 332210 112222211 11 2345778888999999888
Q ss_pred HHc--CCCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 136 MEA--ELDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 136 ie~--GIk~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
.+. ++..+|+ ..| .+.++..++.+.
T Consensus 96 ~~~~g~iD~lv~-nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 96 TAKWGRVDVLVN-NAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp HHHHSCCCEEEE-CCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred HHHcCCCCEEEE-CCCcCCCCCcccCCHHHHHHHHHH
Confidence 876 7888888 666 345665554443
|
| >2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.085 Score=45.85 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=64.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+.+|+|.|+ |-.|...+..+... ..+|+|..++.+-++.+.|+||++. +|+.. .++|=++++.-- .-.++=.
T Consensus 1 m~~~~I~g~-~~~~~~a~n~~~~~~~~~~~~i~~~~~~dk~a~~idg~~v~s~-~~i~~-~e~DyiiIa~~~-~~~qi~~ 76 (306)
T 2g6t_A 1 MYKCLIWGV-NDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVIDK-TEISN-YEFDYIIIFNKE-RYSDIKN 76 (306)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHTTSEEEEEEECSSCSCSBSSSCBEECG-GGGGG-SCCSEEEECCTT-THHHHHH
T ss_pred CceEEEEec-cHHHHHHHHHHHHHhhcccceEEEEecchhhhhhhCCeeccCH-HHHhc-CCCCEEEEeccc-cHHHHHH
Confidence 468999999 88999888766553 4789998898888888999999954 55553 489999999977 5667777
Q ss_pred HHHHcCCCE
Q 030220 134 EAMEAELDL 142 (181)
Q Consensus 134 eaie~GIk~ 142 (181)
++++-||+.
T Consensus 77 ~l~~~gi~~ 85 (306)
T 2g6t_A 77 EALELGIPE 85 (306)
T ss_dssp HHHHTTCCG
T ss_pred HHHHcCCch
Confidence 888999986
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.4 Score=38.86 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=57.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccc--cHHHH---hhccCCc---EEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFN--SVAEA---KAETKAN---ASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~--sl~e~---~~~~~~D---VaIdfVPp~~a 128 (181)
.++++|.|++|-+|+.+++.+.+.|.+++.. -++... ..+.+.-. .+++. .++...+ +..|.+.++.+
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSD---VVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCT---TCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCcccc---ccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 3568899999999999999999999997642 222221 11111111 12222 1212223 34577888999
Q ss_pred HHHHHHHHHc--CCCEEEEeCCCC
Q 030220 129 AAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 129 ~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
.++++++.+. ++..+|+ ..|+
T Consensus 87 ~~~~~~~~~~~g~id~lv~-nAg~ 109 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAIT-NAGI 109 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEE-CCCC
T ss_pred HHHHHHHHHhcCCCCEEEE-CCCC
Confidence 9999988876 7998888 6554
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.039 Score=48.00 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCC-eE----E---cC--ccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H---LG--LPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G-~e----i---~G--vPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |.||+.+.+.+.. .+.+-|...|+.... ++ + .| +.++++++++++ ++|+++.++|..
T Consensus 129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~--~aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVK--GVDIITTVTADK 205 (350)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHT--TCSEEEECCCCS
T ss_pred CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHh--cCCEEEEeccCC
Confidence 468999999 9999999988765 567666666655311 01 1 15 456789999987 799999999975
Q ss_pred HHHHHH-HHHHHcCCCEEEEeCC
Q 030220 127 FAAAAI-MEAMEAELDLVVCITE 148 (181)
Q Consensus 127 ~a~~~~-~eaie~GIk~IV~iTt 148 (181)
.....+ .+.++.|.. |+++++
T Consensus 206 ~~~pvl~~~~l~~G~~-V~~vgs 227 (350)
T 1x7d_A 206 AYATIITPDMLEPGMH-LNAVGG 227 (350)
T ss_dssp SEEEEECGGGCCTTCE-EEECSC
T ss_pred CCCceecHHHcCCCCE-EEECCC
Confidence 211111 245566654 444354
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.37 Score=38.41 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=53.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|.+|+.+++.+.+.|.+++.. +..... ... ..+++.- .++. +..|...++.+.++++++.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~-~r~~~~-~~~-----~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIA-DLVPAP-EAE-----AAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSCCH-HHH-----HHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-cCCchh-HHH-----HHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHH
Confidence 568999999999999999999999997743 322200 000 0111110 0122 33466778888888888876
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 79 ~~g~id~lv~-nAg~ 92 (249)
T 2ew8_A 79 TFGRCDILVN-NAGI 92 (249)
T ss_dssp HHSCCCEEEE-CCCC
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 7898988 5554
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.06 Score=44.61 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe---EE---cCccccc-cHH-HHhhccCCcEEEEeeChH-
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EH---LGLPVFN-SVA-EAKAETKANASVIYVPPP- 126 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~---ei---~GvPVy~-sl~-e~~~~~~~DVaIdfVPp~- 126 (181)
++++|+|.|++|.+|+.+++.+.+.|.+|++... +..... .+ .++.++. ++. +... ++|++|-+....
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~d~vih~A~~~~ 103 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPAS 103 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC--CCSEEEECCSCCS
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhc--CCCEEEECccccC
Confidence 4578999999999999999999999999886432 111000 00 1122221 222 2222 689988765321
Q ss_pred -----------------HHHHHHHHHHHcCCCEEEE
Q 030220 127 -----------------FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 127 -----------------~a~~~~~eaie~GIk~IV~ 145 (181)
....+++.|.+.|++.|..
T Consensus 104 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 139 (343)
T 2b69_A 104 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLA 139 (343)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1445677777888865544
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.11 Score=40.85 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=43.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee-ChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV-PPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV-Pp~~a~~~~~eai 136 (181)
+++++|+|+ |-.|+.+...+.+.++++++.+|.+. |+|++.+.++ .+ +++.+ .+..-++..+++.
T Consensus 3 m~~~~I~Ga-gg~gk~v~~~~~~~~~~v~~f~Dd~~------g~~vig~~~~------~~-~~iaig~~~~r~~~~~~l~ 68 (194)
T 3bfp_A 3 TEKIYIYGA-SGHGLVCEDVAKNMGYKECIFLDDFK------GMKFESTLPK------YD-FFIAIGNNEIRKKIYQKIS 68 (194)
T ss_dssp CSEEEEEC---CHHHHHHHHHHHHTCSEEEEEC--------------CCCCC------CE-EEECCCCHHHHHHHHHHHH
T ss_pred CccEEEEeC-CHHHHHHHHHHHhCCCeEEEEEeCCC------CCeEECCccc------ce-EEEEeCCHHHHHHHHHHHH
Confidence 457999999 88999999988777899999888542 6788775442 23 45555 4555566667777
Q ss_pred HcCCC
Q 030220 137 EAELD 141 (181)
Q Consensus 137 e~GIk 141 (181)
+.|.+
T Consensus 69 ~~~~~ 73 (194)
T 3bfp_A 69 ENGFK 73 (194)
T ss_dssp TTTCC
T ss_pred HcCCc
Confidence 76765
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.056 Score=41.64 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
.+.+..+|+|.|++|.+|+..++.+...|.++++
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~ 68 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYT 68 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEE
Confidence 3456778999999999999999999888998775
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.37 Score=38.91 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
+.++++|.|++|-+|+.+++.+.+.|.+++...+..... . ..+.+.+++...+ +..|.+.++.+.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA--A------LETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHH--H------HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--H------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 345688889999999999999999999988543433211 0 1111112222222 3356778888999998
Q ss_pred HHHHc--CCCEEEEeCCC
Q 030220 134 EAMEA--ELDLVVCITEG 149 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG 149 (181)
++.+. ++..+|+ ..|
T Consensus 75 ~~~~~~g~id~lv~-nAg 91 (258)
T 3oid_A 75 QIDETFGRLDVFVN-NAA 91 (258)
T ss_dssp HHHHHHSCCCEEEE-CCC
T ss_pred HHHHHcCCCCEEEE-CCC
Confidence 88776 7888888 555
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.25 Score=38.95 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=51.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-c-EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-N-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-D-VaIdfVPp~~a~~~~~e 134 (181)
.+|+|.|++|.+|+.+++.+.+.|.+|+. ++.... .+++..++. ++ . +..|...++.+.+++++
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLIL-IDREAA-----------ALDRAAQELGAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence 56999999999999999999999999774 333210 111111110 11 1 23466677777777776
Q ss_pred HHH-cCCCEEEEeCCCC
Q 030220 135 AME-AELDLVVCITEGI 150 (181)
Q Consensus 135 aie-~GIk~IV~iTtG~ 150 (181)
+.+ .++..+|+ ..|+
T Consensus 80 ~~~~~~id~li~-~Ag~ 95 (254)
T 2wsb_A 80 AEAVAPVSILVN-SAGI 95 (254)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHhhCCCcEEEE-CCcc
Confidence 655 36888888 5554
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.12 Score=43.31 Aligned_cols=104 Identities=10% Similarity=-0.003 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
.+|+|.|++|-+|+.+++.+.+.|.+|+.. +..... .. .+...+++.-...++. +..|.+.++.+.++++++.+
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~-~r~~~~--~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIA-DIRQDS--ID--KALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEE-ESCHHH--HH--HHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEE-ECCHHH--HH--HHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999997743 322111 00 1111111110000122 34577888889999998887
Q ss_pred c--CCCEEEEeCCCC---------CHHHHHHHHHHhhhhchh
Q 030220 138 A--ELDLVVCITEGI---------PQHDMVINFTRVNILLVA 168 (181)
Q Consensus 138 ~--GIk~IV~iTtG~---------~~ed~~~l~~~ak~ipv~ 168 (181)
. ++..+|+ ..|+ +.++..++.+.--.-++.
T Consensus 84 ~~g~id~lv~-nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 124 (319)
T 3ioy_A 84 RFGPVSILCN-NAGVNLFQPIEESSYDDWDWLLGVNLHGVVN 124 (319)
T ss_dssp HTCCEEEEEE-CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred hCCCCCEEEE-CCCcCCCCCcccCCHHHHHHHHHHHhHHHHH
Confidence 6 6777777 7775 556666665554444443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.15 Score=40.86 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=50.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|.+|+.+++.+.+.|.+++.. -++.... ++. .+..|...++.+.++++++.+
T Consensus 16 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~-----------------~~~~D~~~~~~~~~~~~~~~~ 77 (247)
T 1uzm_A 16 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-GLF-----------------GVEVDVTDSDAVDRAFTAVEE 77 (247)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-TSE-----------------EEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-Hhc-----------------CeeccCCCHHHHHHHHHHHHH
Confidence 568889999999999999999999997753 3332211 111 133456677888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 78 ~~g~id~lv~-~Ag~ 91 (247)
T 1uzm_A 78 HQGPVEVLVS-NAGL 91 (247)
T ss_dssp HHSSCSEEEE-ECSC
T ss_pred HcCCCCEEEE-CCCC
Confidence 4 6888887 4443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.016 Score=47.49 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=59.2
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChHHHH---HHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAA---AAI 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~---~~~ 132 (181)
+|.|+|+ |.||+.+.+.+.+.|.++. ..|+.... +++ .|.. +.+++++ + ++|++|.++|+.... ..+
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~~v~-v~~r~~~~~~~l~~~~~~~-~~~~~~~-~--~~Divi~~tp~~~~~~~~~~l 191 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGLEVW-VWNRTPQRALALAEEFGLR-AVPLEKA-R--EARLLVNATRVGLEDPSASPL 191 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHTCE-ECCGGGG-G--GCSEEEECSSTTTTCTTCCSS
T ss_pred eEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHhccc-hhhHhhc-c--CCCEEEEccCCCCCCCCCCCC
Confidence 7999999 9999999999998888643 56654311 111 1333 6677777 5 799999999988532 112
Q ss_pred -HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 133 -MEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 133 -~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
..+++.|. .|+-++.+ +.+ . ++.+.+++
T Consensus 192 ~~~~l~~g~-~viD~~~~-p~~-t-~l~~~a~~ 220 (263)
T 2d5c_A 192 PAELFPEEG-AAVDLVYR-PLW-T-RFLREAKA 220 (263)
T ss_dssp CGGGSCSSS-EEEESCCS-SSS-C-HHHHHHHH
T ss_pred CHHHcCCCC-EEEEeecC-Ccc-c-HHHHHHHH
Confidence 23344443 45555555 332 2 35555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.043 Score=43.70 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=54.0
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-cCccccc-c------HHHH-hhccCCcEEEEeeCh
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLPVFN-S------VAEA-KAETKANASVIYVPP 125 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-~GvPVy~-s------l~e~-~~~~~~DVaIdfVPp 125 (181)
....+|+|+|+ |+.|+.+++.+.+.|. ++ .++++... .+. .|++++. + ++++ ++ ++|++|..+|.
T Consensus 7 ~~~~~viI~G~-G~~G~~la~~L~~~g~-v~-vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~ 81 (234)
T 2aef_A 7 AKSRHVVICGW-SESTLECLRELRGSEV-FV-LAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR--GARAVIVDLES 81 (234)
T ss_dssp ---CEEEEESC-CHHHHHHHHHSTTSEE-EE-EESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCT--TCSEEEECCSC
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHhCCe-EE-EEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcc--hhcEEEEcCCC
Confidence 34567999999 9999999999988887 55 56644311 000 3444432 2 2222 22 78999999987
Q ss_pred HHH-HHHHHHHHHcCCC-EEEEeC
Q 030220 126 PFA-AAAIMEAMEAELD-LVVCIT 147 (181)
Q Consensus 126 ~~a-~~~~~eaie~GIk-~IV~iT 147 (181)
+.. ..++..|-+.+.+ .|++-.
T Consensus 82 d~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 82 DSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEE
Confidence 644 4445566666876 566544
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.37 Score=38.56 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+|+. ++.... .+++..++. ++. +..|...++.+.+++++
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~ 79 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAI-ADLDVM-----------AAQAVVAGLENGGFAVEVDVTKRASVDAAMQK 79 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHTCTTCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH
Confidence 356999999999999999999999999774 332210 112221111 222 34566778888888887
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 80 ~~~~~g~iD~lv~-~Ag~ 96 (263)
T 3ak4_A 80 AIDALGGFDLLCA-NAGV 96 (263)
T ss_dssp HHHHHTCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 7888888 5553
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.23 Score=40.32 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.+|+. ++..... .. ...+++.++...+ +..|...++.+.++++++
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~~-----~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVV-ASRNLEE--AS-----EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH-----HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH-----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46888999999999999999999999774 3332210 00 0111211111222 234677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 94 ~~~~g~iD~lvn-nAg~ 109 (267)
T 1vl8_A 94 KEKFGKLDTVVN-AAGI 109 (267)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 765 7888888 6564
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.3 Score=39.80 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=56.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
+.+.++|.|++|-+|+.+++.+.+.|.+++......... . ..+.+.+++...+ +..|.+.++.+.++++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAA--A------EEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHH--H------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHH--H------HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 345688999999999999999999999987533322210 0 1112212211222 3357788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 98 ~~~~~~g~iD~lvn-nAG~ 115 (267)
T 3u5t_A 98 TAEEAFGGVDVLVN-NAGI 115 (267)
T ss_dssp HHHHHHSCEEEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 6888887 6664
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.24 Score=39.93 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=59.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++.+.. .++++.++. ++ -+..|.+.++.+.+.+++
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLL-TGRNES-----------NIARIREEFGPRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCcceEEEccCCCHHHHHHHHHH
Confidence 356889999999999999999999999774 333210 122222111 12 234567788888888888
Q ss_pred HHHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 135 AMEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+.+. ++..+|+ ..|+ +.++..+..+.
T Consensus 76 ~~~~~g~id~lv~-nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 76 AGQTLGAIDLLHI-NAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp HHHHHSSEEEEEE-CCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEE-CCCCCCCCChhhCCHHHHHHHHHH
Confidence 8776 6777777 6665 45555554443
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.25 Score=39.52 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=50.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
++++|.|++|.+|+.+++.+.+.|.+++.. +......+ .++ . -+..|...++.+.++++++.+.
T Consensus 8 k~vlVTGas~giG~~ia~~l~~~G~~V~~~-~r~~~~~~-~~~----------~----~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 8 KNVWVTGAGKGIGYATALAFVEAGAKVTGF-DQAFTQEQ-YPF----------A----TEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ESCCCSSC-CSS----------E----EEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCchhhhc-CCc----------e----EEEcCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999997753 32221100 110 0 1223556677788888877765
Q ss_pred --CCCEEEEeCCCC
Q 030220 139 --ELDLVVCITEGI 150 (181)
Q Consensus 139 --GIk~IV~iTtG~ 150 (181)
++..+|+ ..|+
T Consensus 72 ~g~id~lv~-~Ag~ 84 (250)
T 2fwm_X 72 TERLDALVN-AAGI 84 (250)
T ss_dssp CSCCCEEEE-CCCC
T ss_pred cCCCCEEEE-CCCc
Confidence 6888888 5554
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.084 Score=44.81 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCceEEEEccCCCCcch-hhHHHHHhCCeEeeecCCCCCC---eE--EcCccccc--cHHHHh-hccCCcEEEEe--eCh
Q 030220 57 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG---TE--HLGLPVFN--SVAEAK-AETKANASVIY--VPP 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~-~~k~~~~~g~~IVagVdP~~~G---~e--i~GvPVy~--sl~e~~-~~~~~DVaIdf--VPp 125 (181)
.++||.|+|+ |..|.. .++.+.+.|.+|. +.|.+... .+ -.|++++. +.+++. . ++|++|.. +|+
T Consensus 3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~-~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~--~~d~vV~Spgi~~ 78 (326)
T 3eag_A 3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVS-GCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEF--KADVYVIGNVAKR 78 (326)
T ss_dssp CCCEEEEESC-CSHHHHHHHHHHHHTTCEEE-EEESSCCTTHHHHHHHTTCEEEESCCGGGGGSC--CCSEEEECTTCCT
T ss_pred CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCC--CCCEEEECCCcCC
Confidence 4578999999 999994 7788888899977 44533211 11 14788774 444443 2 58877764 343
Q ss_pred HHHHHHHHHHHHcCCC
Q 030220 126 PFAAAAIMEAMEAELD 141 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk 141 (181)
+ ...+.+|.++|++
T Consensus 79 ~--~p~~~~a~~~gi~ 92 (326)
T 3eag_A 79 G--MDVVEAILNLGLP 92 (326)
T ss_dssp T--CHHHHHHHHTTCC
T ss_pred C--CHHHHHHHHcCCc
Confidence 3 2334556666665
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.075 Score=46.81 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=64.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCC-------------CC---e---------EEcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-------------GG---T---------EHLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~-------------~G---~---------ei~G--vPVy~--sl~ 108 (181)
.||.|-|+ |+.|+.+.+.+.+. +++||+..|... .| . .+.| ++||. +.+
T Consensus 5 ~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp~ 83 (338)
T 3lvf_P 5 VKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDAS 83 (338)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCGG
T ss_pred EEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEecccc
Confidence 58999999 99999999988775 789998654211 01 0 1233 56764 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++ .+.++|+++..+-.....+-+...+++|.+.|++
T Consensus 84 ~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (338)
T 3lvf_P 84 KLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121 (338)
T ss_dssp GSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred cCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEE
Confidence 553 2348999999888888888889999999999887
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.048 Score=46.35 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=53.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCC--Ce---EE-cCc------ccc-ccHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG--GT---EH-LGL------PVF-NSVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~--G~---ei-~Gv------PVy-~sl~e~~~~~~~DVaIdfV 123 (181)
+||.|+|+ |.||......+...|. +++ .+|.... .. ++ .+. .+. .+. +..+ ++|++|+++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~--~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-ADLK--GSDVVIVAA 75 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-GGGT--TCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-HHhC--CCCEEEEcc
Confidence 47999999 9999998888888777 665 4554321 10 00 111 121 232 3344 799999999
Q ss_pred ChH----------------HHHHHHHHHHHcCCCEE-EEeCCCC
Q 030220 124 PPP----------------FAAAAIMEAMEAELDLV-VCITEGI 150 (181)
Q Consensus 124 Pp~----------------~a~~~~~eaie~GIk~I-V~iTtG~ 150 (181)
|.. ...++++.+.+.....+ +++|-+.
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcH
Confidence 852 25677777776665554 4444433
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.25 Score=40.58 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|++|-+|+.+++.+.+.|.+|+. ++.... .++++.++. ++ -+..|.+.++.+.+++++
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLC-ADIDGD-----------AADAAATKIGCGAAACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEE-EESSHH-----------HHHHHHHHHCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHcCCcceEEEecCCCHHHHHHHHHH
Confidence 356888899999999999999999999774 332210 112221111 22 234577888899999988
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 97 ~~~~~g~iD~lvn-nAg~ 113 (277)
T 3gvc_A 97 CVAAFGGVDKLVA-NAGV 113 (277)
T ss_dssp HHHHHSSCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 7888888 6554
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=93.51 E-value=0.33 Score=37.98 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|-+|+.+++.+.+.|.+++..++..... .. .+...+++.-. ++. +..|...++.+.++++++.+
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~--~~--~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 75 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA--AE--EVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAID 75 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH--HH--HHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--HH--HHHHHHHhcCC--cEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999988644433211 10 11111111100 111 23456677788888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 76 ~~g~id~li~-~Ag~ 89 (244)
T 1edo_A 76 AWGTIDVVVN-NAGI 89 (244)
T ss_dssp HSSCCSEEEE-CCCC
T ss_pred HcCCCCEEEE-CCCC
Confidence 5 6888888 6554
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.13 Score=41.09 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeEEcCccccccHHHHhhcc-CCc---EEEEeeCh-HHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN---ASVIYVPP-PFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D---VaIdfVPp-~~a~~~ 131 (181)
.++|+|.|++|-+|+.+++.+.+.|.+ ++ .++..... ..++++.+.. ..+ +..|...+ +.+.+.
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~-~~~r~~~~---------~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFV-ILDRVENP---------TALAELKAINPKVNITFHTYDVTVPVAESKKL 74 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEE-EEESSCCH---------HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCcEEE-EEecCchH---------HHHHHHHHhCCCceEEEEEEecCCChHHHHHH
Confidence 356999999999999999999999997 55 34433210 1122222211 112 22355555 777777
Q ss_pred HHHHHHc--CCCEEEEeCCCC-CHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGI-PQHDMVINFT 160 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~-~~ed~~~l~~ 160 (181)
++++.+. ++..+|+ ..|+ +.++..+..+
T Consensus 75 ~~~~~~~~g~id~lv~-~Ag~~~~~~~~~~~~ 105 (254)
T 1sby_A 75 LKKIFDQLKTVDILIN-GAGILDDHQIERTIA 105 (254)
T ss_dssp HHHHHHHHSCCCEEEE-CCCCCCTTCHHHHHH
T ss_pred HHHHHHhcCCCCEEEE-CCccCCHHHHhhhhe
Confidence 7777665 7999998 5564 4555444433
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.29 Score=39.38 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=55.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+|+|.|++|-+|+.+++.+.+.|.+++...+..... .-...+++.+. .++. +..|.+.++.+.++++++.
T Consensus 27 k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAG-------AQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH-------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHH-------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4688889999999999999999999986544433211 01112222211 0121 3346778888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 100 ~~~g~id~li~-nAg~ 114 (267)
T 4iiu_A 100 AQHGAWYGVVS-NAGI 114 (267)
T ss_dssp HHHCCCSEEEE-CCCC
T ss_pred HHhCCccEEEE-CCCC
Confidence 76 6888888 6654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.4 Score=39.23 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++..... ... ...+++.+....+ +..|...++.+.++++++
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~~V~~-~~r~~~~-~~~-----~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGANIVL-NGFGAPD-EIR-----TVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEE-ECCCCHH-HHH-----HHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCChH-HHH-----HHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 46888899999999999999999999773 3432111 000 0111221111122 224677888888988888
Q ss_pred HHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 136 MEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
.+. ++..+|+ ..|+ +.++..++.+.
T Consensus 99 ~~~~g~iD~lv~-nAg~~~~~~~~~~~~~~~~~~~~v 134 (281)
T 3v2h_A 99 ADRFGGADILVN-NAGVQFVEKIEDFPVEQWDRIIAV 134 (281)
T ss_dssp HHHTSSCSEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHCCCCCEEEE-CCCCCCCCCcccCCHHHHHHHHHH
Confidence 876 7888888 6665 55665555443
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.22 Score=40.08 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=54.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++..... . ..+.+.+++...+ +..|.+.++.+.++++++
T Consensus 7 k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r~~~~--~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 77 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGARVVI-TGRTKEK--L------EEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQI 77 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--H------HHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 56888899999999999999999999774 3433211 0 0111111211122 345777888899999888
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|+ ..|
T Consensus 78 ~~~~g~id~lv~-nAg 92 (257)
T 3imf_A 78 DEKFGRIDILIN-NAA 92 (257)
T ss_dssp HHHHSCCCEEEE-CCC
T ss_pred HHHcCCCCEEEE-CCC
Confidence 876 7888888 555
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.3 Score=39.45 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=55.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
...++|.|++|-+|+.+++.+.+.|.+++....... . ... ...++..+. .++. +..|.+.++.+.++++++
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN-D-HVS-----TWLMHERDAGRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH-H-HHH-----HHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch-H-HHH-----HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 355788899999999999999999999774321211 1 000 011111110 1232 345778889999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 98 ~~~~g~id~li~-nAg~ 113 (269)
T 3gk3_A 98 LADFGKVDVLIN-NAGI 113 (269)
T ss_dssp HHHHSCCSEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCc
Confidence 876 7888888 6554
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.25 Score=38.59 Aligned_cols=79 Identities=19% Similarity=0.058 Sum_probs=52.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~D-VaIdfVPp~~a~~~~~eai 136 (181)
++|+|.|++|.+|+.+++.+.+.|.+++.. +.... .++++.++. ++. +..|...++.+.++++++.
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~-~r~~~-----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLM-ARDEK-----------RLQALAAELEGALPLPGDVREEGDWARAVAAME 73 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEE-ESCHH-----------HHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEE-ECCHH-----------HHHHHHHHhhhceEEEecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999997743 32210 112221111 222 3346677888888887776
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 74 ~~~~~id~li~-~Ag~ 88 (234)
T 2ehd_A 74 EAFGELSALVN-NAGV 88 (234)
T ss_dssp HHHSCCCEEEE-CCCC
T ss_pred HHcCCCCEEEE-CCCc
Confidence 64 7888888 5554
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.24 Score=40.03 Aligned_cols=79 Identities=23% Similarity=0.184 Sum_probs=53.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.... .+++..++. ++. +..|...++.+.++++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVF-GDILDE-----------EGKAMAAELADAARYVHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Confidence 56899999999999999999999999774 232210 111111100 121 334667788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 76 ~~~~g~iD~lv~-~Ag~ 91 (260)
T 1nff_A 76 VTAFGGLHVLVN-NAGI 91 (260)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 766 7999988 5553
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.43 Score=38.19 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCC------CCeEEcCccccccHHHHhhcc-CCcEEEEeeC------
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTEHLGLPVFNSVAEAKAET-KANASVIYVP------ 124 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~------~G~ei~GvPVy~sl~e~~~~~-~~DVaIdfVP------ 124 (181)
.++|+|.|++|-+|+.+++.+.+.|.+++.. +.+. ...... .-+.++++++.++. ++|++|-..-
T Consensus 19 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~-~r~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~iD~lv~~Ag~~~~~~ 96 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRAVADVLSQEGAEVTIC-ARNEELLKRSGHRYVV-CDLRKDLDLLFEKVKEVDILVLNAGGPKAGF 96 (249)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEE-ESCHHHHHHTCSEEEE-CCTTTCHHHHHHHSCCCSEEEECCCCCCCBC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cCCHHHHHhhCCeEEE-eeHHHHHHHHHHHhcCCCEEEECCCCCCCCC
Confidence 3569999999999999999999999997743 2221 011111 12244677766554 6898887541
Q ss_pred -----hHH---------------HHHHHHHHHHcCCCEEEEeCC
Q 030220 125 -----PPF---------------AAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 -----p~~---------------a~~~~~eaie~GIk~IV~iTt 148 (181)
++. ++.++..+.+.+...||++++
T Consensus 97 ~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS 140 (249)
T 1o5i_A 97 FDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITS 140 (249)
T ss_dssp GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 111 233445555678778888764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.07 Score=46.54 Aligned_cols=89 Identities=17% Similarity=0.048 Sum_probs=56.4
Q ss_pred eeeccCCceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCC---Ce--EEc-------CccccccHHHHhhccCCc
Q 030220 52 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EHL-------GLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 52 ~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~---G~--ei~-------GvPVy~sl~e~~~~~~~D 117 (181)
.+.+-++.||+|+|++|..|+.....+...|. +++ .+|.... |. ++. .+....+.++..+ ++|
T Consensus 2 ~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~--dAD 78 (343)
T 3fi9_A 2 SLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALT--DAK 78 (343)
T ss_dssp CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHT--TEE
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhC--CCC
Confidence 34555678999999989999988877777664 555 4554321 10 011 1222346777666 789
Q ss_pred EEEEeeC----------------hHHHHHHHHHHHHcCCCEE
Q 030220 118 ASVIYVP----------------PPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 118 VaIdfVP----------------p~~a~~~~~eaie~GIk~I 143 (181)
++|++.- ...+.+.++.+.+.+.+.+
T Consensus 79 vVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 79 YIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 9998842 2445666777777777763
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.27 Score=39.67 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=52.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHh--hc--cCCc-EEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAK--AE--TKAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~--~~--~~~D-VaIdfVPp~~a~~~~~ 133 (181)
++++|.|++|.+|+.+++.+.+.|.+|+. ++.... ... ...+++. .. .++. +..|...++.+.++++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFAREGAKVTI-TGRHAE--RLE-----ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILS 78 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HHH-----HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHH--HHH-----HHHHHHHhcccCCCceeEEecccCCHHHHHHHHH
Confidence 56888899999999999999999999774 333210 000 0011110 10 0122 2346677888888888
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~id~lv~-~Ag~ 96 (278)
T 1spx_A 79 TTLGKFGKLDILVN-NAGA 96 (278)
T ss_dssp HHHHHHSCCCEEEE-CCC-
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 77765 7888888 6665
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.58 Score=37.69 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++. +.... .++++.++. ++. +..|.+.++.+.+++++
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~-~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGT-ARRTE-----------ALDDLVAAYPDRAEAISLDVTDGERIDVVAAD 72 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-ESSGG-----------GGHHHHHHCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eCCHH-----------HHHHHHHhccCCceEEEeeCCCHHHHHHHHHH
Confidence 3568888999999999999999999998753 32221 112222111 222 33567788888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~id~lv~-~Ag~ 89 (281)
T 3m1a_A 73 VLARYGRVDVLVN-NAGR 89 (281)
T ss_dssp HHHHHSCCSEEEE-CCCC
T ss_pred HHHhCCCCCEEEE-CCCc
Confidence 7766 7888888 5553
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.27 Score=39.11 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++..... .. ...+++ .. ++ -+..|.+.++.+.++++++.+
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~-~~r~~~~--~~-----~~~~~~-~~-~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSM-MGRRYQR--LQ-----QQELLL-GN-AVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH-----HHHHHH-GG-GEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH-----HHHHHh-cC-CceEEECCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999774 3332210 00 011111 11 12 134566778888888888877
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 74 ~~g~id~lvn-nAg~ 87 (235)
T 3l6e_A 74 WGGLPELVLH-CAGT 87 (235)
T ss_dssp HHCSCSEEEE-ECCC
T ss_pred hcCCCcEEEE-CCCC
Confidence 5 6888888 5554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.34 Score=38.83 Aligned_cols=80 Identities=21% Similarity=0.121 Sum_probs=53.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++.... .++++.++. ++. +..|...++.+.+++++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVL-ADVLDE-----------EGAATARELGDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999774 332210 112221111 121 23466778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~iD~lv~-nAg~ 89 (254)
T 1hdc_A 73 AREEFGSVDGLVN-NAGI 89 (254)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 7765 7888888 6664
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.34 Score=39.47 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=54.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++|+|.|++|.+|+.+++.+.+.|.+|+. ++.... ... ...+++ ++...+ +..|...++.+.++++++
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~~V~~-~~r~~~--~~~-----~~~~~l-~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 115 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVSHVIC-ISRTQK--SCD-----SVVDEI-KSFGYESSGYAGDVSKKEEISEVINKI 115 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEE-EESSHH--HHH-----HHHHHH-HTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEE-EcCCHH--HHH-----HHHHHH-HhcCCceeEEECCCCCHHHHHHHHHHH
Confidence 56999999999999999999999999886 443211 000 011222 111222 234677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 116 ~~~~~~id~li~-~Ag~ 131 (285)
T 2c07_A 116 LTEHKNVDILVN-NAGI 131 (285)
T ss_dssp HHHCSCCCEEEE-CCCC
T ss_pred HHhcCCCCEEEE-CCCC
Confidence 764 6888888 5554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.33 Score=38.35 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++.. +..... . ..+.+..++...+ +..|...++.+.+.+++
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~-~r~~~~--~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGT-ATSQAS--A------EKFENSMKEKGFKARGLVLNISDIESIQNFFAE 75 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEE-ESSHHH--H------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eCCHHH--H------HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 3568888999999999999999999997743 322110 0 0111112211222 34577888889999988
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 76 ~~~~~~~id~li~-~Ag~ 92 (247)
T 3lyl_A 76 IKAENLAIDILVN-NAGI 92 (247)
T ss_dssp HHHTTCCCSEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 5888888 6665
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.37 Score=39.13 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=61.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCccc-cccHHHH---hhccCCc---EEEEeeChHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLPV-FNSVAEA---KAETKAN---ASVIYVPPPFAAA 130 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvPV-y~sl~e~---~~~~~~D---VaIdfVPp~~a~~ 130 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. +.++.... .+.-.+- -..++++ +++...+ +..|.+.++.+.+
T Consensus 16 k~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 94 (280)
T 3pgx_A 16 RVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSA-SVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRE 94 (280)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCT-TCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccc-cccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 56888999999999999999999999774 23221111 0000000 0012222 2222222 3357788899999
Q ss_pred HHHHHHHc--CCCEEEEeCCCC---------CHHHHHHHHH
Q 030220 131 AIMEAMEA--ELDLVVCITEGI---------PQHDMVINFT 160 (181)
Q Consensus 131 ~~~eaie~--GIk~IV~iTtG~---------~~ed~~~l~~ 160 (181)
+++++.+. ++..+|+ ..|+ +.++..++.+
T Consensus 95 ~~~~~~~~~g~id~lvn-nAg~~~~~~~~~~~~~~~~~~~~ 134 (280)
T 3pgx_A 95 LVADGMEQFGRLDVVVA-NAGVLSWGRVWELTDEQWDTVIG 134 (280)
T ss_dssp HHHHHHHHHCCCCEEEE-CCCCCCCBCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEE-CCCCCCCCCcccCCHHHHHHHHh
Confidence 99888876 7888888 6664 4555555444
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.15 Score=43.68 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=29.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..+|+...
T Consensus 36 ~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~V 71 (292)
T 3h8v_A 36 TFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKV 71 (292)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred CCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 368999999 999999999999988775556776553
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.34 Score=37.99 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=52.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++|+|.|++|.+|+.+++.+.+.|.+++...+..... .. .. .+++ ++...+ +..|...++.+.+++++
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~--~~--~~---~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTS--LD--AT---AEEF-KAAGINVVVAKGDVKNPEDVENMVKT 76 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSH--HH--HH---HHHH-HHTTCCEEEEESCTTSHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHH--HH--HH---HHHH-HhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 35699999999999999999999999987542332211 10 01 1111 111222 23466777788888877
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030220 135 AMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~~ 151 (181)
..+. ++..+|+ ..|+.
T Consensus 77 ~~~~~~~~d~vi~-~Ag~~ 94 (247)
T 2hq1_A 77 AMDAFGRIDILVN-NAGIT 94 (247)
T ss_dssp HHHHHSCCCEEEE-CC---
T ss_pred HHHhcCCCCEEEE-CCCCC
Confidence 7665 7888888 65653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.29 Score=39.23 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+|+. ++.... ... .+ .+++.+. .++. +..|...++.+.++++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~--~~~--~~---~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVL-VARQVD--RLH--EA---ARSLKEKFGVRVLEVAVDVATPEGVDAVVESV 79 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEE-EESCHH--HHH--HH---HHHHHHHHCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE-EcCCHH--HHH--HH---HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999774 333211 000 11 1122111 1222 334677888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 80 ~~~~g~id~lv~-~Ag~ 95 (263)
T 3ai3_A 80 RSSFGGADILVN-NAGT 95 (263)
T ss_dssp HHHHSSCSEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 766 7899988 5554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.33 Score=39.63 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|++|-+|+.+++.+.+.|.+|+. ++..... . -...+++ ++...+ +..|.+.++.+.+++++
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~-----~~~~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYG-CARDAKN--V-----SAAVDGL-RAAGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHH-HTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHH-HhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999774 3332210 0 0112222 111222 33577888899999998
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 95 ~~~~~g~id~lv~-nAg~ 111 (279)
T 3sju_A 95 AVERFGPIGILVN-SAGR 111 (279)
T ss_dssp HHHHHCSCCEEEE-CCCC
T ss_pred HHHHcCCCcEEEE-CCCC
Confidence 8876 7888888 6664
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.22 Score=39.88 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=53.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.++|.|++|-+|+.+++.+.+.|.+++.. .++.... +. . +++-. ++. +..|.+.++.+.++++++.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~-----~---~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~ 76 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGE-EP-----A---AELGA--AVRFRNADVTNEADATAALAFAK 76 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-HH-----H---HHhCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence 568888999999999999999999997642 3332211 11 1 11111 222 3356778888999998888
Q ss_pred Hc--CCCEEEEeCCCCC
Q 030220 137 EA--ELDLVVCITEGIP 151 (181)
Q Consensus 137 e~--GIk~IV~iTtG~~ 151 (181)
+. ++..+|+ ..|+.
T Consensus 77 ~~~g~id~lv~-nAg~~ 92 (257)
T 3tpc_A 77 QEFGHVHGLVN-CAGTA 92 (257)
T ss_dssp HHHSCCCEEEE-CCCCC
T ss_pred HHcCCCCEEEE-CCCCC
Confidence 76 7888988 66643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.31 Score=41.42 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEee-ecCCCCCCe--EE-----cCccccccHHHHhhccCCcEEEEee---
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVG-GVTPKKGGT--EH-----LGLPVFNSVAEAKAETKANASVIYV--- 123 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IVa-gVdP~~~G~--ei-----~GvPVy~sl~e~~~~~~~DVaIdfV--- 123 (181)
+..||.|+|+ |.||......+...|. +++- ++++...|. ++ ..+.++.+. +.++ ++|++|+..
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~--~aD~Vi~aag~~ 88 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASA--HSKVVIFTVNSL 88 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGT--TCSEEEECCCC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHC--CCCEEEEcCCCC
Confidence 4478999998 9999977777777676 6542 344432221 01 124444566 3345 799999986
Q ss_pred ------------ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 124 ------------PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 124 ------------Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
..+...+.++++.+.....++++.+. |..-+.+.
T Consensus 89 ~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN-P~~~~t~~ 134 (303)
T 2i6t_A 89 GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ-PVEIMTYV 134 (303)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS-SHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC-hHHHHHHH
Confidence 23346777778877777777655555 55544433
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.38 Score=38.37 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++.... ... .+ .+++.+ ...+ +..|...++.+.++++++
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~-~~r~~~--~~~--~~---~~~l~~-~~~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAI-AARRVE--KLR--AL---GDELTA-AGAKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEE-EESCHH--HHH--HH---HHHHHH-TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHH--HHH--HH---HHHHHh-cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999774 333210 000 01 122211 1222 234677888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 79 ~~~~g~id~lv~-nAg~ 94 (247)
T 2jah_A 79 VEALGGLDILVN-NAGI 94 (247)
T ss_dssp HHHHSCCSEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 7898888 5554
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.26 Score=39.73 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeCh-HHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPP-PFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp-~~a~~~~~ 133 (181)
...|+|.|++|-+|+.+++.+.+.|.+|+. ++..... .-..++++.+.. ++. +.+|...+ +.+..+++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~-~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVL-TCRDVTK-------GHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEE-EESCHHH-------HHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCCEEEE-EeCCHHH-------HHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHH
Confidence 456888899999999999999999998774 3322210 011123322211 122 23456666 77777777
Q ss_pred HHHHc--CCCEEEEeCCCCC
Q 030220 134 EAMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~~ 151 (181)
++.+. ++..+|+ ..|+.
T Consensus 84 ~~~~~~g~iD~lv~-nAg~~ 102 (311)
T 3o26_A 84 FIKTHFGKLDILVN-NAGVA 102 (311)
T ss_dssp HHHHHHSSCCEEEE-CCCCC
T ss_pred HHHHhCCCCCEEEE-CCccc
Confidence 77765 7999998 77763
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.35 Score=37.97 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=52.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|.+|+.+++.+.+.|.+++. ++.... ... .+ .+++.++. ++. +..|...++.+.++++++
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~-~~r~~~--~~~--~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAA-LDLSAE--TLE--ET---ARTHWHAYADKVLRVRADVADEGDVNAAIAAT 74 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HHH--HH---HHHHSTTTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHH--HHH--HH---HHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999998774 333221 000 00 11110110 121 334667788888888877
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 75 ~~~~~~id~li~-~Ag~ 90 (250)
T 2cfc_A 75 MEQFGAIDVLVN-NAGI 90 (250)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 765 7888888 5554
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.27 Score=39.39 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=54.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--c-CCc-EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--T-KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~-~~D-VaIdfVPp~~a~~~~~e 134 (181)
++++|.|++|.+|+.+++.+.+.|.+|+. ++.... ... .+ .+++.+. . ++. +..|...++.+.+++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~--~~~--~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLL-FSRNRE--KLE--AA---ASRIASLVSGAQVDIVAGDIREPGDIDRLFEK 79 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HHH--HH---HHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE-EeCCHH--HHH--HH---HHHHHhcCCCCeEEEEEccCCCHHHHHHHHHH
Confidence 56899999999999999999999999774 333221 010 01 1121110 0 222 23567788888888888
Q ss_pred HHHc-CCCEEEEeCCCC
Q 030220 135 AMEA-ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~ 150 (181)
+.+. |+..+|+ ..|+
T Consensus 80 ~~~~~gid~lv~-~Ag~ 95 (260)
T 2z1n_A 80 ARDLGGADILVY-STGG 95 (260)
T ss_dssp HHHTTCCSEEEE-CCCC
T ss_pred HHHhcCCCEEEE-CCCC
Confidence 8876 7888888 6664
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=93.08 E-value=0.18 Score=40.45 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=55.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++..... . ..+.+.....-.-+..|.+.++.+.++++++.+
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~-~~r~~~~--~------~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIG-TATSESG--A------QAISDYLGDNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEE-EESSHHH--H------HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--H------HHHHHHhcccceEEEEeCCCHHHHHHHHHHHHH
Confidence 356888899999999999999999999774 3332211 0 011111111111245577888999999998887
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 80 ~~g~iD~lv~-nAg~ 93 (248)
T 3op4_A 80 EFGGVDILVN-NAGI 93 (248)
T ss_dssp HHCCCSEEEE-CCCC
T ss_pred HcCCCCEEEE-CCCC
Confidence 6 7888888 6664
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.15 Score=43.06 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=50.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChH---------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPP--------- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~--------- 126 (181)
+.++|.|++|-+|+.+++.+.+.|.+|+........ ... .+ .+++.++. ++. +..|...++
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~--~~~--~~---~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA--EAN--AL---SATLNARRPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH--HH---HHHHHHHSTTCEEEEECCCSSSCBCC------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHH--HHH--HH---HHHHHhhcCCeEEEEEeeCCCchhcccccccc
Confidence 568888999999999999999999997743212210 000 01 11111011 111 234555555
Q ss_pred --------HHHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 127 --------FAAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 127 --------~a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
.+.++++++.+. ++..+|+ ..|+
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVn-nAG~ 152 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVN-NASS 152 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEE-CCCC
Confidence 777777777665 7888888 5554
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.32 Score=38.91 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=51.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
++++|.|++|-+|+.+++.+.+.|.+|+. ++..... . ..+.+ ++....++..+ .++.+.++++++.+.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~--~------~~~~~-l~~~~~~~~~~--d~~~v~~~~~~~~~~ 69 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVAC-HDESFKQ--K------DELEA-FAETYPQLKPM--SEQEPAELIEAVTSA 69 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEE-CCGGGGS--H------HHHHH-HHHHCTTSEEC--CCCSHHHHHHHHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCCHHH--H------HHHHH-HHhcCCcEEEE--CHHHHHHHHHHHHHH
Confidence 45888899999999999999999999774 3432211 1 11222 22123343322 666777777777665
Q ss_pred --CCCEEEEeCCCCC
Q 030220 139 --ELDLVVCITEGIP 151 (181)
Q Consensus 139 --GIk~IV~iTtG~~ 151 (181)
++..+|+ ..|+.
T Consensus 70 ~g~iD~lv~-nAg~~ 83 (254)
T 1zmt_A 70 YGQVDVLVS-NDIFA 83 (254)
T ss_dssp HSCCCEEEE-ECCCC
T ss_pred hCCCCEEEE-CCCcC
Confidence 7888888 55543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.1 Score=41.26 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+ .|.+|+.. +..... . -...+++.+. .++. +..|...++.+.+++++
T Consensus 4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~-~r~~~~--~-----~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLT-ARDVTR--G-----QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEE-ESSHHH--H-----HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEE-eCChHH--H-----HHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHH
Confidence 46789999999999999999999 89997753 322100 0 0111222111 1232 33566777888888887
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030220 135 AMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~~ 151 (181)
+.+. ++..+|+ ..|+.
T Consensus 76 ~~~~~g~id~li~-~Ag~~ 93 (276)
T 1wma_A 76 LRKEYGGLDVLVN-NAGIA 93 (276)
T ss_dssp HHHHHSSEEEEEE-CCCCC
T ss_pred HHHhcCCCCEEEE-CCccc
Confidence 7665 6788887 65654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.23 Score=40.58 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
+.++|.|++|-+|+.+++.+.+.|.+|+. ++..... .. .+...+++.- .++ -+..|...++.+.++++++.+
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~~--~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIG-TATTEAG--AE--GIGAAFKQAG--LEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEE-EESSHHH--HH--HHHHHHHHHT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HHHHHHHhcC--CcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 45788899999999999999999999774 3332211 00 0111111110 122 244577888899999998887
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 102 ~~g~iD~lvn-nAg~ 115 (270)
T 3ftp_A 102 EFGALNVLVN-NAGI 115 (270)
T ss_dssp HHSCCCEEEE-CCCC
T ss_pred HcCCCCEEEE-CCCC
Confidence 6 7888888 6554
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.15 Score=46.17 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=59.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE-cC-cccc--------------------ccHHHHhhc
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH-LG-LPVF--------------------NSVAEAKAE 113 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei-~G-vPVy--------------------~sl~e~~~~ 113 (181)
++.+|+|+|. |.+|--..-.+.+.|++++| ++|+.+.. .+ .| .|+| .+.+++++
T Consensus 20 ~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~Did~~kV~-~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~- 96 (444)
T 3vtf_A 20 HMASLSVLGL-GYVGVVHAVGFALLGHRVVGYDVNPSIVE-RLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA- 96 (444)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH-
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh-
Confidence 4678999999 99998777778888999885 35544322 11 11 3443 24555555
Q ss_pred cCCcEEEEeeCh----------HHHHHHHH---HHHHc-C-CCEEEEeC---CCCCHHHHHHHHH
Q 030220 114 TKANASVIYVPP----------PFAAAAIM---EAMEA-E-LDLVVCIT---EGIPQHDMVINFT 160 (181)
Q Consensus 114 ~~~DVaIdfVPp----------~~a~~~~~---eaie~-G-Ik~IV~iT---tG~~~ed~~~l~~ 160 (181)
++|+.+++||- ..+..+++ ..++. + =+.||.=+ -|.+++-...+.+
T Consensus 97 -~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~ 160 (444)
T 3vtf_A 97 -ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVA 160 (444)
T ss_dssp -TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHH
T ss_pred -cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHH
Confidence 68999999973 12333333 33332 2 24555534 4777765555443
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.33 Score=40.35 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=55.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+|+. ++..... . -...+++.+.. ++. +..|.+.++.+.+++++
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAV-AARSPRE--L-----SSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESSGGG--G-----HHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--H-----HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 356888899999999999999999999774 3433211 0 01122221111 121 34577888999999988
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 113 ~~~~~g~iD~lvn-nAg~ 129 (293)
T 3rih_A 113 VVDAFGALDVVCA-NAGI 129 (293)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8876 7888888 5554
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.17 Score=41.59 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC-CcEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK-ANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~-~DVaIdfVPp~~a~~~~~eaie 137 (181)
+.++|.|++|-+|+.+++.+.+.|.+|+. ++..... .. .+...+.+... .. .-+..|.+.++.+.++++++.+
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~~--~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVI-TGRRPDV--LD--AAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46888899999999999999999999774 3332210 00 11111111111 01 1244577888999999988887
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 108 ~~g~iD~lvn-nAG~ 121 (281)
T 4dry_A 108 EFARLDLLVN-NAGS 121 (281)
T ss_dssp HHSCCSEEEE-CCCC
T ss_pred HcCCCCEEEE-CCCC
Confidence 6 7888888 6554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.17 Score=42.68 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh--CCeEeeecCCCCC--Ce---EE-cC---------ccccccHHHHhhccCCcEEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKG--GT---EH-LG---------LPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~--g~~IVagVdP~~~--G~---ei-~G---------vPVy~sl~e~~~~~~~DVaId 121 (181)
+||+|+|+ |.+|......+.+. |.+++ .+|.... .. ++ .+ +....+.++ ++ ++|++|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~--~aDvVii 75 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA--NSDIVII 75 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT--TCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HC--CCCEEEE
Confidence 47999999 99999888877764 66665 4443321 11 01 11 222345655 55 7999999
Q ss_pred eeCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 122 YVPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 122 fVPp----------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
++|. ..+.++++.+.+.+...++.+-+. |..-+
T Consensus 76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN-P~~~~ 124 (310)
T 1guz_A 76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN-PLDIM 124 (310)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS-SHHHH
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chHHH
Confidence 9964 334566676666766655433333 44443
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.13 Score=42.01 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eaie 137 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.... .+++...+ ++ -+..|.+.++.+.++++++.+
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r~~~-----------~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGHPLLL-LARRVE-----------RLKALNLP-NTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCCEEE-EESCHH-----------HHHTTCCT-TEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHhhcC-CceEEEecCCCHHHHHHHHHHHHH
Confidence 46888899999999999999999999774 332210 01111110 11 134466778888888888877
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 84 ~~g~iD~lvn-nAg~ 97 (266)
T 3p19_A 84 IYGPADAIVN-NAGM 97 (266)
T ss_dssp HHCSEEEEEE-CCCC
T ss_pred HCCCCCEEEE-CCCc
Confidence 6 6888887 6665
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.36 Score=39.10 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=60.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++....... . .. ..+.+.+++...+ +..|.+.++.+.++++++
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST-K-DA------EKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH-H-HH------HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH-H-HH------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56888899999999999999999999875322211 0 00 1111111211222 345677888899999988
Q ss_pred HHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 136 MEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
.+. ++..+|+ ..|+ +.++..++.+.
T Consensus 91 ~~~~g~id~lvn-nAg~~~~~~~~~~~~~~~~~~~~~ 126 (270)
T 3is3_A 91 VAHFGHLDIAVS-NSGVVSFGHLKDVTEEEFDRVFSL 126 (270)
T ss_dssp HHHHSCCCEEEC-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEE-CCCCCCCCCcccCCHHHHHHHHHH
Confidence 876 7888887 6665 55555555443
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.15 Score=44.24 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE----------------------------cCc--cccc--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------LGL--PVFN-- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei----------------------------~Gv--PVy~-- 105 (181)
..+|+|+|+ |..|..+++.+...|..-+..+|+....... .++ ..++
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 578999999 9999999999999887755455654321000 011 1111
Q ss_pred -----cHHHHhhccCCcEEEEeeChH--HHHHHHHHHHHcCCCEEEE
Q 030220 106 -----SVAEAKAETKANASVIYVPPP--FAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 -----sl~e~~~~~~~DVaIdfVPp~--~a~~~~~eaie~GIk~IV~ 145 (181)
++++ ++ ++|++|+++-.. .-+.+-+.|.+.|++.|.+
T Consensus 197 i~~~~~~~~-~~--~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~ 240 (353)
T 3h5n_A 197 INDYTDLHK-VP--EADIWVVSADHPFNLINWVNKYCVRANQPYINA 240 (353)
T ss_dssp CCSGGGGGG-SC--CCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred cCchhhhhH-hc--cCCEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence 1333 33 789999987443 3445557888999998854
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.5 Score=38.91 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++....... -..+.+..++...++ ..|...++.+.+++++
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAI-NYLPAEEED------AQQVKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-ECCGGGHHH------HHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCcchhH------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999774 232211000 011222222222222 2466778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 122 ~~~~~g~iD~lv~-nAg~ 138 (294)
T 3r3s_A 122 AREALGGLDILAL-VAGK 138 (294)
T ss_dssp HHHHHTCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 8775 7888888 5554
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.49 Score=38.60 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+|+. ++..... . -...+++.+ ...++ ..|.+.++.+.++++++
T Consensus 27 k~~lVTGas~gIG~aia~~la~~G~~V~~-~~r~~~~--~-----~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVAGARILI-NGTDPSR--V-----AQTVQEFRN-VGHDAEAVAFDVTSESEIIEAFARL 97 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEE-CCSCHHH--H-----HHHHHHHHH-TTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 56888899999999999999999999773 3432210 0 011222211 12222 24667788888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 98 ~~~~g~iD~lv~-nAg~ 113 (271)
T 4ibo_A 98 DEQGIDVDILVN-NAGI 113 (271)
T ss_dssp HHHTCCCCEEEE-CCCC
T ss_pred HHHCCCCCEEEE-CCCC
Confidence 876 6888888 6664
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.97 Score=36.62 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCccccc----cHHHH---hhccCCc---EEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLPVFN----SVAEA---KAETKAN---ASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvPVy~----sl~e~---~~~~~~D---VaIdfVPp~~ 127 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. +.++.... ......... .+++. .+....+ +..|.+.++.
T Consensus 12 k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 90 (286)
T 3uve_A 12 KVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRA-GVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDA 90 (286)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBT-TBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccc-cccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHH
Confidence 56889999999999999999999999764 23322111 011111111 12222 2222223 3457788899
Q ss_pred HHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 128 AAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 128 a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
+.++++++.+. ++..+|+ ..|+
T Consensus 91 v~~~~~~~~~~~g~id~lv~-nAg~ 114 (286)
T 3uve_A 91 LKAAVDSGVEQLGRLDIIVA-NAGI 114 (286)
T ss_dssp HHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHHHHhCCCCEEEE-CCcc
Confidence 99999998876 7888888 6664
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.41 Score=39.15 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=56.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
.++++|.|++|-+|+.+++.+.+.|.+|+. ++..... .. .+ .+++.+. .++. +..|.+.++.+.++++++
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~~--~~---~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAV-AARHSDA--LQ--VV---ADEIAGVGGKALPIRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESSGGG--GH--HH---HHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 356889999999999999999999999774 3332211 00 11 1222111 1222 445778889999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 104 ~~~~g~iD~lvn-nAg~ 119 (276)
T 3r1i_A 104 TGELGGIDIAVC-NAGI 119 (276)
T ss_dssp HHHHSCCSEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 876 7999998 6554
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.35 Score=38.51 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++....... . .. ..+.+.+++...+ +..|...++.+.+.++++
T Consensus 5 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 76 (246)
T 3osu_A 5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK-E-KA------EAVVEEIKAKGVDSFAIQANVADADEVKAMIKEV 76 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-H-HH------HHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-H-HH------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 56888899999999999999999999875322221 0 00 1111112212223 335677888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 77 ~~~~g~id~lv~-nAg~ 92 (246)
T 3osu_A 77 VSQFGSLDVLVN-NAGI 92 (246)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 876 7888888 6554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.25 Score=40.00 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=52.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++|+|.|++|-+|+.+++.+.+.|.+++.. +..... .... ++ -+..|.+.++.+.++++++.
T Consensus 28 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~-~r~~~~--~~~~-------------~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVAT-SRSIKP--SADP-------------DIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEE-ESSCCC--CSST-------------TEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE-eCChhh--cccC-------------ceEEEEccCCCHHHHHHHHHHHH
Confidence 3568888999999999999999999997753 322211 1110 11 12335667888888888887
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 92 ~~~g~iD~lv~-nAg~ 106 (260)
T 3un1_A 92 ERFGRIDSLVN-NAGV 106 (260)
T ss_dssp HHHSCCCEEEE-CCCC
T ss_pred HHCCCCCEEEE-CCCC
Confidence 76 7888888 6664
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.4 Score=38.95 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++.. +..... .. ..+.+.+++...+ +..|...++.+.+.+++
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~-~r~~~~-~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVN-YANSTE-SA------EEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-ESSCHH-HH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCCchH-HH------HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Confidence 3568888999999999999999999997743 322110 00 0111111111222 23466778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 101 ~~~~~g~iD~lv~-~Ag~ 117 (283)
T 1g0o_A 101 AVKIFGKLDIVCS-NSGV 117 (283)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCc
Confidence 7765 7888888 6554
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.24 Score=39.98 Aligned_cols=84 Identities=17% Similarity=0.082 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~D-VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++..... . -...+++.+.. ++. +..|.+.++.+.+++++
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAV-AGRSTAD--I-----DACVADLDQLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 356888899999999999999999999774 3332211 0 01122221111 121 34577788889999888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 82 ~~~~~g~id~lvn-nAg~ 98 (262)
T 3pk0_A 82 AVEEFGGIDVVCA-NAGV 98 (262)
T ss_dssp HHHHHSCCSEEEE-CCCC
T ss_pred HHHHhCCCCEEEE-CCCC
Confidence 8876 7898988 5554
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.46 Score=39.61 Aligned_cols=90 Identities=26% Similarity=0.220 Sum_probs=54.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCCeEEcCc-cccccHHHHhhccCCcE---EEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGL-PVFNSVAEAKAETKANA---SVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G~ei~Gv-PVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~ 131 (181)
...++|.|++|-+|+.+++.+.+.|.+++. ++.. ..+.....- ..-...+++ ++...++ ..|...++.+.++
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~-~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVV-NDIGVGLDGSPASGGSAAQSVVDEI-TAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEE-ECCCBCTTSSBTCTTSHHHHHHHHH-HHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCcccccccccccHHHHHHHHHHH-HhcCCcEEEEECCCCCHHHHHHH
Confidence 356888899999999999999999999774 2322 111000000 001112222 1112232 2356778888888
Q ss_pred HHHHHHc--CCCEEEEeCCCC
Q 030220 132 IMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~ 150 (181)
++++.+. ++..+|+ ..|+
T Consensus 105 ~~~~~~~~g~iD~lv~-nAg~ 124 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVN-NAGI 124 (322)
T ss_dssp HHHHHHHHSCCCEEEC-CCCC
T ss_pred HHHHHHHcCCCCEEEE-CCCC
Confidence 8888876 7888888 6664
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=92.68 E-value=0.34 Score=39.45 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=55.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+++. ++.... .++++.++...+ +..|.+.++.+.+++++
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~-~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGL-HGTRED-----------KLKEIAADLGKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHHCSSEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCHH-----------HHHHHHHHhCCceEEEEeecCCHHHHHHHHHH
Confidence 356888899999999999999999998764 332210 122222221222 33567788888898888
Q ss_pred HHHc--CCCEEEEeCCCCC
Q 030220 135 AMEA--ELDLVVCITEGIP 151 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~~ 151 (181)
+.+. ++..+|+ ..|+.
T Consensus 95 ~~~~~g~iD~lvn-nAg~~ 112 (266)
T 3grp_A 95 AEREMEGIDILVN-NAGIT 112 (266)
T ss_dssp HHHHHTSCCEEEE-CCCCC
T ss_pred HHHHcCCCCEEEE-CCCCC
Confidence 8876 7888988 66654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.045 Score=48.19 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=53.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
..+|+|+|+ |++|+..++.+.+.|.+|+ ..|+.... +++ .|.... +.+++.. .++|+++-+.........
T Consensus 173 GktV~V~G~-G~VG~~~A~~L~~~GakVv-v~D~~~~~l~~~a~~~ga~~v-~~~~ll~-~~~DIvip~a~~~~I~~~-- 246 (364)
T 1leh_A 173 GLAVSVQGL-GNVAKALCKKLNTEGAKLV-VTDVNKAAVSAAVAEEGADAV-APNAIYG-VTCDIFAPCALGAVLNDF-- 246 (364)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHCCEEC-CGGGTTT-CCCSEEEECSCSCCBSTT--
T ss_pred cCEEEEECc-hHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEE-ChHHHhc-cCCcEeeccchHHHhCHH--
Confidence 467999999 9999999999999999977 66654311 000 122222 3344433 478999876544322211
Q ss_pred HHHHcCCCEEEEeCCCCC
Q 030220 134 EAMEAELDLVVCITEGIP 151 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~ 151 (181)
.+-..|.+.|+. +++-|
T Consensus 247 ~~~~lg~~iV~e-~An~p 263 (364)
T 1leh_A 247 TIPQLKAKVIAG-SADNQ 263 (364)
T ss_dssp HHHHCCCSEECC-SCSCC
T ss_pred HHHhCCCcEEEe-CCCCC
Confidence 122238888887 55555
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.43 Score=39.08 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
.+.++|.|++|-+|+.+++.+.+.|.+++.. -++.... ++.+ .+....+++ ++...+ +..|.+.++.+.++++
T Consensus 9 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHP-KLPG-TIYTAAKEI-EEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCS-SSCC-CHHHHHHHH-HHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhh-hhhH-HHHHHHHHH-HhcCCcEEEEECCCCCHHHHHHHHH
Confidence 3568899999999999999999999997742 3332211 1100 011111222 111222 3346778889999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 86 ~~~~~~g~id~lvn-nAg~ 103 (285)
T 3sc4_A 86 KTVEQFGGIDICVN-NASA 103 (285)
T ss_dssp HHHHHHSCCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 5554
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.35 Score=38.99 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~D-VaIdfVPp~~a~~~~~ 133 (181)
.+.++|.|++|-+|+.+++.+.+.|.+|+. ++..... . -...+++.+.. ++. +..|.+.++.+.++++
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAF-CARDGER--L-----RAAESALRQRFPGARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHH
Confidence 356888999999999999999999999764 3332211 0 01112221111 121 3357788899999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 80 ~~~~~~g~id~lvn-nAg~ 97 (265)
T 3lf2_A 80 ACERTLGCASILVN-NAGQ 97 (265)
T ss_dssp HHHHHHCSCSEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCCC
Confidence 88876 7888888 6554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.1 Score=44.02 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=60.0
Q ss_pred cccCCCCCeeeccCCc------eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc
Q 030220 44 SSAAASHPAVFVDKNT------RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 44 ~~~~~~~~~~~~~~~~------rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D 117 (181)
|.++-+-+++.+++++ .++|-|+++-+|+.+++.+.+.|.+|+ ..+.+.. .+ -..++|+-. .-.-
T Consensus 9 s~~~~~~~n~~~~~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~-i~~r~~~--~l-----~~~~~~~g~-~~~~ 79 (273)
T 4fgs_A 9 SGVDLGTENLYFQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVF-ITGRRKD--VL-----DAAIAEIGG-GAVG 79 (273)
T ss_dssp ----------------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESCHH--HH-----HHHHHHHCT-TCEE
T ss_pred cCCCccccccchhhhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECCHH--HH-----HHHHHHcCC-CeEE
Confidence 4444555566665543 366669999999999999999999976 3343321 01 011233211 1123
Q ss_pred EEEEeeChHHHHHHHHHHHHc--CCCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 118 ASVIYVPPPFAAAAIMEAMEA--ELDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~--GIk~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
+..|.+.++.+.++++++.+. +|..+|+ -.| ++++|..++.+.
T Consensus 80 ~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVN-NAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 80 IQADSANLAELDRLYEKVKAEAGRIDVLFV-NAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCEEEEEE-CCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCEEEE-CCCCCCCCChhhccHHHHHHHHHH
Confidence 556788999999999999876 5777777 443 456666655544
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.61 Score=37.20 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=54.8
Q ss_pred CceEEEEccC--CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHH
Q 030220 58 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGat--GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~ 132 (181)
..+++|.|++ |-+|+.+++.+.+.|.+++.. +...... . . ..++++.+....+ +..|...++.+.+++
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~-~~~~~~~-~--~---~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAIT-YASRAQG-A--E---ENVKELEKTYGIKAKAYKCQVDSYESCEKLV 92 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEEC-BSSSSSH-H--H---HHHHHHHHHHCCCEECCBCCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEE-eCCcchh-H--H---HHHHHHHHhcCCceeEEecCCCCHHHHHHHH
Confidence 3568888999 899999999999999997743 2222110 0 0 1122222211122 234667888899999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030220 133 MEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~ 150 (181)
+++.+. ++..+|+ ..|+
T Consensus 93 ~~~~~~~g~id~li~-nAg~ 111 (267)
T 3gdg_A 93 KDVVADFGQIDAFIA-NAGA 111 (267)
T ss_dssp HHHHHHTSCCSEEEE-CCCC
T ss_pred HHHHHHcCCCCEEEE-CCCc
Confidence 888876 6888888 5554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.46 Score=38.86 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=54.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++..... .. .+ .+++ ++...+ +..|.+.++.+.++++++
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~-~~r~~~~--~~--~~---~~~l-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILL-GARRQAR--IE--AI---ATEI-RDAGGTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEE-EESSHHH--HH--HH---HHHH-HHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHH-HhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56888899999999999999999999774 3332211 00 11 1222 111222 235777888899999888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 76 ~~~~g~iD~lVn-nAG~ 91 (264)
T 3tfo_A 76 VDTWGRIDVLVN-NAGV 91 (264)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 876 7888888 6554
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.61 E-value=0.28 Score=39.06 Aligned_cols=83 Identities=6% Similarity=0.062 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC---CeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g---~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~ 132 (181)
+++|+|.|++|-+|+.+++.+.+.| .+|+.. +..... . . .++++.+. .++. +..|...++.+.+++
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~-~r~~~~--~---~---~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNREQ--A---K---ELEDLAKNHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCTTS--C---H---HHHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEE-ecChhh--h---H---HHHHhhccCCceEEEEecCCChHHHHHHH
Confidence 4579999999999999999999988 887743 332211 1 1 12332211 1222 234667778888888
Q ss_pred HHHHHc----CCCEEEEeCCCC
Q 030220 133 MEAMEA----ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~----GIk~IV~iTtG~ 150 (181)
+++.+. ++..+|+ ..|+
T Consensus 92 ~~~~~~~g~~~id~li~-~Ag~ 112 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFN-NAGI 112 (267)
T ss_dssp HHHHHHHGGGCCSEEEE-CCCC
T ss_pred HHHHHhcCCCCccEEEE-CCCc
Confidence 777654 6899988 5554
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.2 Score=40.97 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=53.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|++|.+|+.+++.+.+.|.+|+. ++..... . -...+++.+..++. +..|...++.+.++++++.
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~-~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGARVFI-CARDAEA--C-----ADTATRLSAYGDCQAIPADLSSEAGARRLAQALG 100 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-ECSCHHH--H-----HHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeCCHHH--H-----HHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999774 3433210 0 00112211100111 1235667888888888877
Q ss_pred Hc--CCCEEEEeCCCC
Q 030220 137 EA--ELDLVVCITEGI 150 (181)
Q Consensus 137 e~--GIk~IV~iTtG~ 150 (181)
+. ++..+|+ ..|+
T Consensus 101 ~~~g~iD~lvn-nAg~ 115 (276)
T 2b4q_A 101 ELSARLDILVN-NAGT 115 (276)
T ss_dssp HHCSCCSEEEE-CCCC
T ss_pred HhcCCCCEEEE-CCCC
Confidence 65 6888888 5553
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.29 Score=39.89 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=52.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh----ccCCc---EEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA----ETKAN---ASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~----~~~~D---VaIdfVPp~~a~~~ 131 (181)
.+|+|.|++|-+|+.+++.+.+.|.+|+. ++..... .. .+ .+++.+ ....+ +..|...++.+.++
T Consensus 19 k~vlVTGasggIG~~la~~l~~~G~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 90 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELLELGSNVVI-ASRKLER--LK--SA---ADELQANLPPTKQARVIPIQCNIRNEEEVNNL 90 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HH---HHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeCCHHH--HH--HH---HHHHHhhccccCCccEEEEecCCCCHHHHHHH
Confidence 56999999999999999999999999774 3332110 00 11 122211 01122 23466778888888
Q ss_pred HHHHHHc--CCCEEEEeCCC
Q 030220 132 IMEAMEA--ELDLVVCITEG 149 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG 149 (181)
++++.+. ++..+|+ ..|
T Consensus 91 ~~~~~~~~g~id~li~-~Ag 109 (303)
T 1yxm_A 91 VKSTLDTFGKINFLVN-NGG 109 (303)
T ss_dssp HHHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHHcCCCCEEEE-CCC
Confidence 8887765 6888888 555
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.79 Score=37.21 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=55.0
Q ss_pred CceEEEEccCCC--CcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGK--NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGk--mG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~-DVaIdfVPp~~a~~~~~ 133 (181)
.++|+|.|++|. +|+.+++.+.+.|.+++. ++... .. ..++++.++. ++ =+..|.+.++.+.++++
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~-~~r~~-~~--------~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAF-TYVGQ-FK--------DRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEE-EECTT-CH--------HHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEE-eeCch-HH--------HHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 356889999966 999999999999999764 33222 10 1223332211 22 24457788889999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 96 ~~~~~~g~id~li~-nAg~ 113 (280)
T 3nrc_A 96 ELGKVWDGLDAIVH-SIAF 113 (280)
T ss_dssp HHHHHCSSCCEEEE-CCCC
T ss_pred HHHHHcCCCCEEEE-CCcc
Confidence 88876 6888888 6664
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.18 Score=42.51 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=51.3
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCeEE--cCc-ccc-----ccHHHHhhc---cCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH--LGL-PVF-----NSVAEAKAE---TKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~ei--~Gv-PVy-----~sl~e~~~~---~~~DVaId 121 (181)
.+.+..+|+|.|++|.+|+..++.+...|.++++.. ++.+.. .. .|. .++ .++.+.+++ ..+|++++
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~-~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH-HHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH-HHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence 356678899999999999999999998999877532 333211 00 121 111 133333321 16899999
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030220 122 YVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~G 139 (181)
++......+.+..++..|
T Consensus 245 ~~g~~~~~~~~~~~l~~~ 262 (347)
T 2hcy_A 245 VSVSEAAIEASTRYVRAN 262 (347)
T ss_dssp CSSCHHHHHHHTTSEEEE
T ss_pred CCCcHHHHHHHHHHHhcC
Confidence 998644444444444433
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.049 Score=45.34 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=52.9
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCccccccHHHHhhccCCcEEEEeeChHHHH---HHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNSVAEAKAETKANASVIYVPPPFAA---AAI 132 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~---~~~ 132 (181)
+|+|+|+ |.||+.+...+.+.|.+-|..+|+.... +++ .+.-.++++++.++ ++|++|.++|..... ..-
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~--~aDiVInatp~gm~p~~~~i~ 186 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVK--KAKSLFNTTSVGMKGEELPVS 186 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHH--TCSEEEECSSTTTTSCCCSCC
T ss_pred eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhc--CCCEEEECCCCCCCCCCCCCC
Confidence 8999999 9999999999999998423345543211 111 12124567777777 799999999853211 111
Q ss_pred HHHHHcCCCEEEEeCCC
Q 030220 133 MEAMEAELDLVVCITEG 149 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG 149 (181)
.+.+..+ ..|+-+..+
T Consensus 187 ~~~l~~~-~~V~Divy~ 202 (253)
T 3u62_A 187 DDSLKNL-SLVYDVIYF 202 (253)
T ss_dssp HHHHTTC-SEEEECSSS
T ss_pred HHHhCcC-CEEEEeeCC
Confidence 2334333 456666666
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.64 Score=37.19 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=53.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~e 134 (181)
.++++|.|++|-+|+.+++.+.+.|.+|+. ++..... +.. .+ .+++.+....++ ..|...++.+.+++++
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~~-~~~--~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 76 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGADIVL-NGFGDAA-EIE--KV---RAGLAAQHGVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEE-ECCSCHH-HHH--HH---HHHHHHHHTSCEEEECCCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEEE-EeCCcch-HHH--HH---HHHHHhccCCcEEEEECCCCCHHHHHHHHHH
Confidence 356888899999999999999999999774 3433210 000 01 112111101222 2466778888888888
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 77 ~~~~~g~iD~lv~-~Ag~ 93 (260)
T 1x1t_A 77 AVRQMGRIDILVN-NAGI 93 (260)
T ss_dssp HHHHHSCCSEEEE-CCCC
T ss_pred HHHhcCCCCEEEE-CCCC
Confidence 7765 7898888 5554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.37 Score=38.55 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=56.0
Q ss_pred ceEEEEccCCC--CcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CCc-EEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGK--NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGk--mG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~D-VaIdfVPp~~a~~~~ 132 (181)
.+++|.|++|. +|+.+++.+.+.|.+++.. +..... -..+++..++. ++. +..|.+.++.+.+++
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~-~r~~~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGARLIFT-YAGERL--------EKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE-ESSGGG--------HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe-cCchHH--------HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 56899999987 9999999999999997743 322111 01223332221 222 346778899999999
Q ss_pred HHHHHc--CCCEEEEeCCCC
Q 030220 133 MEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~ 150 (181)
+++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~~g~id~li~-~Ag~ 97 (266)
T 3oig_A 79 ASIKEQVGVIHGIAH-CIAF 97 (266)
T ss_dssp HHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHhCCeeEEEE-cccc
Confidence 998876 6888888 5554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.14 Score=41.58 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=54.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~~~ea 135 (181)
.++|+|.|++|-+|+.+++.+.+.|.+|++ ++..... .. .+ .+++.+. .++. +..|...++.+.++++++
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~~V~~-~~r~~~~--~~--~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVL-WDINKHG--LE--ET---AAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HH---HHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE-EEcCHHH--HH--HH---HHHHHhcCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 357999999999999999999999999774 3332210 10 11 1122110 1222 234667788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 103 ~~~~g~iD~li~-~Ag~ 118 (272)
T 1yb1_A 103 KAEIGDVSILVN-NAGV 118 (272)
T ss_dssp HHHTCCCSEEEE-CCCC
T ss_pred HHHCCCCcEEEE-CCCc
Confidence 765 7888888 6564
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.23 Score=42.28 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEee-ecCCCCCCeE---E-cCcc------ccccHHHHhhccCCcEEEEee
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVG-GVTPKKGGTE---H-LGLP------VFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IVa-gVdP~~~G~e---i-~GvP------Vy~sl~e~~~~~~~DVaIdfV 123 (181)
+.+||+|+|+ |..|....-.+...+. +|+. ++|+.+...+ + ++.| +..+-.+..+ ++|++|+++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~--~aDvVii~~ 82 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK--DCDVIVVTA 82 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT--TCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC--CCCEEEEcC
Confidence 3478999999 9999977766666665 5553 3444332211 1 1222 3322233344 799999998
Q ss_pred ChHH----------------HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 124 PPPF----------------AAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 124 Pp~~----------------a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
+... +.+.++.+.+.+...++++.| -|..-+..+
T Consensus 83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t-NPv~~~~~~ 132 (318)
T 1y6j_A 83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS-NPVDIITYM 132 (318)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS-SSHHHHHHH
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CcHHHHHHH
Confidence 7543 567777887777777666543 455544433
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.27 Score=38.48 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=52.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eaie 137 (181)
++|+|.|++|-+|+.+++.+.+.|.+++.. +.... ... .+...+.+. ...++. +..|...++.+.++++++.+
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~-~r~~~--~~~--~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIIT-GTSGE--RAK--AVAEEIANK-YGVKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEE-ESSHH--HHH--HHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE-eCChH--HHH--HHHHHHHhh-cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 568899999999999999999999997743 32210 000 011111110 011222 23466777888888877766
Q ss_pred c--CCCEEEEeCCCC
Q 030220 138 A--ELDLVVCITEGI 150 (181)
Q Consensus 138 ~--GIk~IV~iTtG~ 150 (181)
. ++..+|+ ..|+
T Consensus 82 ~~~~~d~vi~-~Ag~ 95 (248)
T 2pnf_A 82 LVDGIDILVN-NAGI 95 (248)
T ss_dssp HSSCCSEEEE-CCCC
T ss_pred hcCCCCEEEE-CCCC
Confidence 5 7888888 5554
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.55 Score=37.91 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=52.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CCc-EEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~D-VaIdfVPp~~a~~~~~ 133 (181)
..+|+|.|++|.+|+.+++.+.+.|.+|++. +.... ... .+ .+++.+.. ++. +..|...++.+.++++
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~-~r~~~--~~~--~~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 103 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGLKVVGC-ARTVG--NIE--EL---AAECKSAGYPGTLIPYRCDLSNEEDILSMFS 103 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ESCHH--HHH--HH---HHHHHHTTCSSEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE-ECChH--HHH--HH---HHHHHhcCCCceEEEEEecCCCHHHHHHHHH
Confidence 3569999999999999999999999997743 32210 000 01 11211110 111 2346677888888877
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 104 ~~~~~~g~iD~vi~-~Ag~ 121 (279)
T 1xg5_A 104 AIRSQHSGVDICIN-NAGL 121 (279)
T ss_dssp HHHHHHCCCSEEEE-CCCC
T ss_pred HHHHhCCCCCEEEE-CCCC
Confidence 76654 7888888 5554
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.73 Score=37.94 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=56.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCcccc--ccHHHHh---hccCCc---EEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLPVF--NSVAEAK---AETKAN---ASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvPVy--~sl~e~~---~~~~~D---VaIdfVPp~~a~ 129 (181)
+.++|.|++|-+|+.+++.+.+.|.+++. +.++...+.. ++.- ..+++.. ++...+ +..|.+.++.+.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVK---LPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCC---SCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeccccccccc---ccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 56888899999999999999999999774 3333322211 1111 1122221 111223 345778889999
Q ss_pred HHHHHHHHc--CCCEEEEeCCC
Q 030220 130 AAIMEAMEA--ELDLVVCITEG 149 (181)
Q Consensus 130 ~~~~eaie~--GIk~IV~iTtG 149 (181)
++++++.+. ++..+|+ ..|
T Consensus 106 ~~~~~~~~~~g~iD~lv~-nAg 126 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLA-NAA 126 (299)
T ss_dssp HHHHHHHHHHSCCCEEEE-CCC
T ss_pred HHHHHHHHHhCCCCEEEE-CCC
Confidence 999988876 7888887 554
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.42 E-value=0.23 Score=40.32 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=55.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc--cCC-cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE--TKA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~--~~~-DVaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++..... +++..++ .++ -+..|.+.++.+.++++++
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r~~~~-----------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLARAGARVVL-ADLPETD-----------LAGAAASVGRGAVHHVVDLTNEVSVRALIDFT 79 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EECTTSC-----------HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEE-EcCCHHH-----------HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999764 3433211 1121111 122 2445778888999999988
Q ss_pred HHc--CCCEEEEeCCCCC
Q 030220 136 MEA--ELDLVVCITEGIP 151 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~~ 151 (181)
.+. ++..+|+ ..|+.
T Consensus 80 ~~~~g~id~lv~-nAg~~ 96 (271)
T 3tzq_B 80 IDTFGRLDIVDN-NAAHS 96 (271)
T ss_dssp HHHHSCCCEEEE-CCCCC
T ss_pred HHHcCCCCEEEE-CCCCC
Confidence 877 7898988 55543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.72 Score=36.57 Aligned_cols=83 Identities=11% Similarity=0.154 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++........ ... ...+++ ++...+ +..|...++.+.++++++
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--~~~-----~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQ--KAN-----EVVDEI-KKLGSDAIAVRADVANAEDVTNMVKQT 76 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH-----HHHHHH-HHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHH--HHH-----HHHHHH-HhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 568888999999999999999999998753221210 000 011222 111222 334677788888888887
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 77 ~~~~g~id~lv~-nAg~ 92 (246)
T 2uvd_A 77 VDVFGQVDILVN-NAGV 92 (246)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 765 7898988 6664
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.78 Score=36.80 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=54.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
++++|.|++|-+|+.+++.+.+.|.+++. ++.... .. ..+.+-+++...+ +..|...++.+.++++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r~~~--~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGTAIAL-LDMNRE--AL------EKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV 78 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HH------HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCHH--HH------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 56899999999999999999999999774 333211 00 0111111111222 234677888888888888
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 79 ~~~~g~id~lv~-nAg~ 94 (262)
T 1zem_A 79 VRDFGKIDFLFN-NAGY 94 (262)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 765 7898888 5554
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.33 E-value=0.23 Score=38.69 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=51.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhC--CeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g--~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~e 134 (181)
..+|+|.|++|-+|+.+++.+.+.| .+|++. +..... .. .+.+. ...++. +..|.+.++.+.+.+++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~-~r~~~~--~~------~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIAT-ARDVEK--AT------ELKSI-KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEE-ESSGGG--CH------HHHTC-CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEE-ecCHHH--HH------HHHhc-cCCceEEEEeecCCHHHHHHHHHH
Confidence 3568999999999999999999998 887753 322211 10 11111 111222 23456677777777777
Q ss_pred HHHc----CCCEEEEeCCCC
Q 030220 135 AMEA----ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~----GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~~~id~li~-~Ag~ 91 (250)
T 1yo6_A 73 VGEIVGSDGLSLLIN-NAGV 91 (250)
T ss_dssp HHHHHGGGCCCEEEE-CCCC
T ss_pred HHHhcCCCCCcEEEE-CCcc
Confidence 6654 7899888 5554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 181 | ||||
| d1euca1 | 130 | c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c | 1e-52 | |
| d1oi7a1 | 121 | c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c | 3e-52 | |
| d2nu7a1 | 119 | c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c | 8e-52 |
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 162 bits (411), Expect = 1e-52
Identities = 81/112 (72%), Positives = 93/112 (83%)
Query: 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF 104
S AS ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVF
Sbjct: 2 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVF 61
Query: 105 NSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
N+V EAK +T A ASVIYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMV
Sbjct: 62 NTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 113
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Score = 161 bits (408), Expect = 3e-52
Identities = 58/104 (55%), Positives = 77/104 (74%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV+++V EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
+ +AS+I+VP P AA A +EA A + L+V ITEGIP DMV
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMV 105
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Score = 159 bits (405), Expect = 8e-52
Identities = 70/104 (67%), Positives = 83/104 (79%)
Query: 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA 112
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A
Sbjct: 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 60
Query: 113 ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 156
T A ASVIYVP PF +I+EA++A + L++ ITEGIP DM+
Sbjct: 61 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDML 104
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 100.0 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 99.84 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 99.78 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 99.77 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 99.7 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 99.63 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 99.63 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 99.56 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 99.48 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 99.16 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 99.06 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 99.06 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 99.01 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.91 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.89 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 98.81 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.75 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.69 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.52 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.47 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.36 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.31 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.26 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.14 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.02 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.02 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.95 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.94 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.93 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.84 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.82 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.81 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.79 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.76 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.72 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.7 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.68 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.67 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.65 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.54 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.53 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.4 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.36 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.24 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.15 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.11 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.08 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 96.94 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.9 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.9 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.9 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.88 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.88 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.88 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.88 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 96.85 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.82 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.81 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.8 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.77 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 96.76 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.75 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.75 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.74 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.72 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.66 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.65 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.64 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 96.56 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 96.53 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.52 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.48 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.42 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.35 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.32 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.27 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.2 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.12 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.05 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 96.03 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 96.02 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.97 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 95.91 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 95.85 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 95.84 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.74 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.73 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.68 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.59 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.35 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.33 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.3 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.27 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.13 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.08 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.0 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.98 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 94.96 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.83 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 94.77 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.76 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.75 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.74 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.64 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.53 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 94.51 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 94.5 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.43 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.31 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 94.2 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.13 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.11 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.05 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.96 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 93.94 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 93.91 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 93.89 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.87 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.79 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 93.64 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.63 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 93.5 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 93.45 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 93.25 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.23 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 93.23 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.13 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.07 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.92 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.82 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 92.75 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.69 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.63 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 92.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.36 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.33 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.32 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.31 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.3 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 92.22 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 91.86 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.75 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.66 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.63 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.58 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 91.52 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 91.4 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.38 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.37 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 91.2 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.11 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.07 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.83 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.81 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.8 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.79 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 90.74 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.72 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.69 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.59 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.43 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.28 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.26 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 90.24 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 90.22 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.16 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.16 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.15 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.13 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.95 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 89.94 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.92 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 89.87 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 89.74 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.53 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 89.52 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 89.51 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 89.51 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.42 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 89.29 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.2 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.11 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 89.1 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.98 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.83 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 88.8 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.76 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 88.71 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.69 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.68 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.63 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 88.52 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 88.09 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 87.88 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 87.48 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.44 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.43 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 86.93 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.82 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.81 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.69 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 86.41 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.28 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 86.12 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 85.83 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 85.79 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 85.75 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.7 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.4 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 85.08 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.02 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.79 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.74 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 84.66 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.53 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 84.35 | |
| d1gr0a1 | 243 | Myo-inositol 1-phosphate synthase {Mycobacterium t | 84.26 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.61 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 83.38 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 83.25 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 83.15 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 82.71 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 82.63 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 82.28 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 81.41 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 81.26 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 81.06 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 80.97 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 80.57 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.42 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.38 |
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.3e-35 Score=229.32 Aligned_cols=118 Identities=69% Similarity=1.081 Sum_probs=114.4
Q ss_pred ccCCCCCeeeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeC
Q 030220 45 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 45 ~~~~~~~~~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
+|++|.|++++|+++||+|+|+||+.|+.+++.|++||+++||||+|+++|+++.|+|||++++|+.+++++|+.++|||
T Consensus 2 ~~~~~~~sIli~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfVP 81 (130)
T d1euca1 2 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVP 81 (130)
T ss_dssp CGGGGGGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCC
T ss_pred CccccceeEEEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEecC
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
|.+|.+++.||+++||++|||+|||+|++|+.++...+
T Consensus 82 p~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~ 119 (130)
T d1euca1 82 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRL 119 (130)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-33 Score=215.24 Aligned_cols=113 Identities=52% Similarity=0.868 Sum_probs=109.7
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++|+++||+|+|+||++|+.+++.|++||+++||||+|+++|+++.|+|||++++|+.+++++|+.++||||.+|.+++
T Consensus 2 ili~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi 81 (121)
T d1oi7a1 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA 81 (121)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred EEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.||+++||++|+|+|||+|++|+.++.+.+++-
T Consensus 82 ~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~ 114 (121)
T d1oi7a1 82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEIKAL 114 (121)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-33 Score=213.48 Aligned_cols=113 Identities=62% Similarity=1.012 Sum_probs=109.6
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+++|+++||+|+|+||+.|+.+++.|++||+++||||+|+++|+++.|+|||++++|+.+++++|+.++||||.+|.+++
T Consensus 1 Ili~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~ 80 (119)
T d2nu7a1 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI 80 (119)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred CeecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhh
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNIL 165 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~i 165 (181)
.||+++||+.|||+|||+|.+|+.++...+++-
T Consensus 81 ~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~ 113 (119)
T d2nu7a1 81 LEAIDAGIKLIITITEGIPTLDMLTVKVKLDEA 113 (119)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998764
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.8e-22 Score=155.73 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=99.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCC---Ce---E-----EcCccccccHHHHhhccCCcEEEEee
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---GT---E-----HLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~---G~---e-----i~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+.+.||+|.|++||||+.+.+.+.+. ++++++++++... |+ + ..+++++++++++.+ ++||+|||+
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~--~~DViIDFs 79 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT 79 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhc--ccceEEEec
Confidence 45689999999999999999998885 9999999885432 11 1 246889999988877 899999999
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhc-hhh
Q 030220 124 PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAF-LNF 172 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~-~~~ 172 (181)
+|+.+.++++.|.++|++.|++ ||||+++|..+|+++|+++||-. .||
T Consensus 80 ~p~~~~~~~~~a~~~~~~~ViG-TTG~~~~~~~~i~~~a~~ipi~~apN~ 128 (162)
T d1diha1 80 RPEGTLNHLAFCRQHGKGMVIG-TTGFDEAGKQAIRDAAADIAIVFAANF 128 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEC-CCCCCHHHHHHHHHHTTTSCEEECSCC
T ss_pred cHHHHHHHHHHHHhccceeEEe-cCCCcHHHHHHHHHHcCCCCEEEEccc
Confidence 9999999999999999999999 99999999999999999999865 565
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.4e-19 Score=137.90 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=83.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
+||+|.|++||||+.+.+.+.+.|+++++++|++.. +. ++ ++|++|||+.|+.+.++++.|+++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--~~------------~~--~~DVvIDFS~p~~~~~~l~~~~~~ 64 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--EE------------LD--SPDVVIDFSSPEALPKTVDLCKKY 64 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--EE------------CS--CCSEEEECSCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--HH------------hc--cCCEEEEecCHHHHHHHHHHHHhc
Confidence 579999999999999999888899999999886531 11 23 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 139 ELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 139 GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
|++.|++ |||++++|+.+|+++|+++||
T Consensus 65 ~~p~ViG-TTG~~~~~~~~i~~~ak~~pv 92 (128)
T d1vm6a3 65 RAGLVLG-TTALKEEHLQMLRELSKEVPV 92 (128)
T ss_dssp TCEEEEC-CCSCCHHHHHHHHHHTTTSEE
T ss_pred CCCEEEE-cCCCCHHHHHHHHHHHhhCCE
Confidence 9999999 999999999999999999997
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=3.3e-19 Score=137.22 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=85.5
Q ss_pred eEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
||+|+|++||||+.+.+.+.+ .++++++++|++. ++.+.. ..++|++|||+.|+.+.++++.|+++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~------------~~~~~~-~~~~DvvIDFS~p~~~~~~~~~~~~~ 67 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD------------PLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDN 67 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC------------CTHHHH-TTTCSEEEECCCTTTHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------------chhhhc-cccCCEEEEcccHHHHHHHHHHHHhc
Confidence 799999999999999998877 5999999998653 122222 23799999999999999999999999
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHH---hhhhchh-chhh
Q 030220 139 ELDLVVCITEGIPQHDMVINFTR---VNILLVA-FLNF 172 (181)
Q Consensus 139 GIk~IV~iTtG~~~ed~~~l~~~---ak~ipv~-~~~~ 172 (181)
|++.|++ ||||+++|+++|++. ++++||- +.||
T Consensus 68 ~~~~ViG-TTG~~~~~~~~l~~~~~~~~~ipil~apNf 104 (135)
T d1yl7a1 68 GIHAVVG-TTGFTAERFQQVESWLVAKPNTSVLIAPNF 104 (135)
T ss_dssp TCEEEEC-CCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred CCCEEEe-ccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence 9999999 999999999999995 7899965 4577
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=2.7e-17 Score=124.89 Aligned_cols=108 Identities=21% Similarity=0.240 Sum_probs=90.6
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
.+|+|. +|+|+|+| +++|..+.+++++.+---|.+|||+. .++.|+|+|+|++|+++ .+|++++++|++.+.
T Consensus 4 ~lf~Pk-sIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~--~~i~G~~~y~sl~dlp~--~vDlvvi~vp~~~~~ 78 (129)
T d2csua1 4 YFFNPK-GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPKRFVK 78 (129)
T ss_dssp TTTSCS-EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCHHHHH
T ss_pred HhCCCC-eEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc--cccCCeEeecchhhcCC--CCceEEEecChHHhH
Confidence 477884 59999999 77787888888775422455999987 57999999999999987 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHH------HHHHHHHhhhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHD------MVINFTRVNIL 165 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed------~~~l~~~ak~i 165 (181)
+++++|.+.|++.+|+++.||.+.+ ..+|.++|++-
T Consensus 79 ~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~ 120 (129)
T d2csua1 79 DTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKY 120 (129)
T ss_dssp HHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHc
Confidence 9999999999999999999998742 34566666653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=7.9e-16 Score=114.77 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=84.0
Q ss_pred ceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
++|+|+|++ +|.|+.+.+.+++.|++|+ +|||+. +++.|+|+|++++|+++ .+|++++|+|++.+.+++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~-pVnP~~--~~i~G~~~y~sl~~lp~--~~D~vvi~vp~~~~~~~l~~~ 76 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVL-PVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVGLQVAKEA 76 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE-EECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEE-EEcccc--ccccCccccccchhccc--cceEEEEEeCHHHHHHHHHHH
Confidence 469999999 7788899999999999865 899986 57999999999999988 899999999999999999999
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 136 MEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
++.|++.+|. ..|.-.+++.++.+.
T Consensus 77 ~~~g~k~v~~-~~g~~~~~~~~~a~~ 101 (116)
T d1y81a1 77 VEAGFKKLWF-QPGAESEEIRRFLEK 101 (116)
T ss_dssp HHTTCCEEEE-CTTSCCHHHHHHHHH
T ss_pred HhcCCceEEe-ccchhhHHHHHHHHH
Confidence 9999999998 666655555544433
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=5.7e-16 Score=119.05 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=84.7
Q ss_pred eeccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 53 VFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 53 ~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+++++ .+|+|+|++ ++.|..+.+++++.|++|+ +|||+. +++.|+|+|++++|+++ .+|++++|+|++.+.
T Consensus 15 ~L~~~-ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~-pVnP~~--~~i~G~~~~~sl~dlp~--~iD~v~i~vp~~~~~ 88 (139)
T d2d59a1 15 ILTRY-KKIALVGASPKPERDANIVMKYLLEHGYDVY-PVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKPKLTM 88 (139)
T ss_dssp HHHHC-CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE-EECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCHHHHH
T ss_pred HHhcC-CeEEEEeecCCCCCchHHHHHHHHHCCCEEE-EECCcc--cccCCCcccccccccCc--cceEEEEEeCHHHHH
Confidence 34444 669999999 7788899999999999865 999987 57999999999999987 899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHH
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDM 155 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~ 155 (181)
+++++|++.|++.+|..+.++.++-.
T Consensus 89 ~~~~e~~~~g~k~v~~~~G~~~ee~~ 114 (139)
T d2d59a1 89 EYVEQAIKKGAKVVWFQYNTYNREAS 114 (139)
T ss_dssp HHHHHHHHHTCSEEEECTTCCCHHHH
T ss_pred HHHHHHHHhCCCEEEEeccccCHHHH
Confidence 99999999999999997777766433
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=1.9e-15 Score=115.28 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=92.8
Q ss_pred eeeccCCceEEEEccC---CCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 52 AVFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 52 ~~~~~~~~rViVvGat---GkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
.+++++ .+|+|+|+| +|.|..+.+++++.|++++ .++|+..++++.|.|+|.++.++++ .+|++++|+|++.+
T Consensus 8 ~~L~~p-ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~-~v~~~~~~~~i~g~~~~~~l~~i~~--~iD~v~v~~p~~~v 83 (136)
T d1iuka_ 8 AYLSQA-KTIAVLGAHKDPSRPAHYVPRYLREQGYRVL-PVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPSAL 83 (136)
T ss_dssp HHHHHC-CEEEEETCCSSTTSHHHHHHHHHHHTTCEEE-EECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHHHH
T ss_pred HHHhCC-CeEEEEeecCCCCCchHHHHHHHhcCCCCce-EEEeccccceeeceecccchhhccC--CCceEEEeccHHHH
Confidence 345666 459999999 7778899999999999876 7888766678999999999999987 89999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 129 AAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 129 ~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
.+++++|++.|++.+|. ..|+.++++.++.+.+..
T Consensus 84 ~~~v~~~~~~g~k~i~~-q~G~~~~e~~~~a~~~Gi 118 (136)
T d1iuka_ 84 MDHLPEVLALRPGLVWL-QSGIRHPEFEKALKEAGI 118 (136)
T ss_dssp TTTHHHHHHHCCSCEEE-CTTCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCeEEE-ecCccCHHHHHHHHHcCC
Confidence 99999999999999997 999988877666555543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.48 E-value=1.6e-14 Score=108.50 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=80.0
Q ss_pred cCCceEEEEccCCCCcchhhHHHHH-hCCeEeeecC--CCCCCeEEcCccccc--cHHHHhhccCCcEEEEeeChHHHHH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT--PKKGGTEHLGLPVFN--SVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVd--P~~~G~ei~GvPVy~--sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
|+.+||+|+|| |++|+..++.+.. .+++++|.+| |.+.|+.+.|+|||+ .++++.+ .++++++.++|.+.+++
T Consensus 1 ~~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~-~~i~iai~~i~~~~~~~ 78 (126)
T d2dt5a2 1 NRKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVP-GRIEIALLTVPREAAQK 78 (126)
T ss_dssp TSCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHST-TTCCEEEECSCHHHHHH
T ss_pred CCCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHh-hcccEEEEeCCHHHHHH
Confidence 46789999999 9999998886654 5899999766 999999999999996 4666654 47999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCC
Q 030220 131 AIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG 149 (181)
+++.|++.||+.|+.|+.+
T Consensus 79 I~d~l~~~gIk~I~~f~~~ 97 (126)
T d2dt5a2 79 AADLLVAAGIKGILNFAPV 97 (126)
T ss_dssp HHHHHHHHTCCEEEECSSS
T ss_pred HHHHHHHcCCCEEeecCce
Confidence 9999999999999998743
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=99.16 E-value=1e-11 Score=95.95 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=83.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
..||.|+|+ |++|+.+.+.+.+. ++++|+.+|++.......+++.+.+.++..+ ++|++++++|+....+.+..|+
T Consensus 3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvi~tp~~~h~~~a~~aL 79 (170)
T d1f06a1 3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPKF 79 (170)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHHH
T ss_pred cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhcc--ccceEEEeCCCcccHHHHHHHH
Confidence 478999998 99999999999884 9999998886654333455666667777666 8999999999999999999999
Q ss_pred HcCCCEEEEeCC-CCCHHHHHHHHHHhhhh
Q 030220 137 EAELDLVVCITE-GIPQHDMVINFTRVNIL 165 (181)
Q Consensus 137 e~GIk~IV~iTt-G~~~ed~~~l~~~ak~i 165 (181)
++|++.|.+-.. .-+.++.++|.++|++-
T Consensus 80 ~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~ 109 (170)
T d1f06a1 80 AQFACTVDTYDNHRDIPRHRQVMNEAATAA 109 (170)
T ss_dssp TTTSEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HCCCcEEEecCccccCHHHHHHHHHHHHhc
Confidence 999998765222 23356678899998764
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.7e-10 Score=86.58 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=84.7
Q ss_pred ceEEEEccCCCCcch-hhHHHHH-hCCeEeeecCCCCCCe-E---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 59 TRVICQGITGKNGTF-HTEQAIE-YGTKMVGGVTPKKGGT-E---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~-~~k~~~~-~g~~IVagVdP~~~G~-e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
.||.|+|+ |++|+. +.+.+.+ .++++++..|++.... + -.++|.|++++++.+ ++|++++++|+....+.+
T Consensus 2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~tp~~~h~~~~ 78 (164)
T d1tlta1 2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFDVV 78 (164)
T ss_dssp EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHHHH
T ss_pred CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhh--hcccccccccchhccccc
Confidence 68999998 999985 6676766 4899999888776431 1 247899999999887 799999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 133 MEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 133 ~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
..|+++|++.++==--..+.+|..+|.+++++-.
T Consensus 79 ~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~ 112 (164)
T d1tlta1 79 STLLNAGVHVCVDKPLAENLRDAERLVELAARKK 112 (164)
T ss_dssp HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred cccccccceeeccccccCCHHHHHHHHHHHHHcC
Confidence 9999999764432113578999999999997654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.06 E-value=1.5e-10 Score=89.47 Aligned_cols=108 Identities=8% Similarity=0.010 Sum_probs=87.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCC-e---EEc----CccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHL----GLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G-~---ei~----GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
.||+|+|+ |++|+.+.+.+... +++++|..|+...- + +.. +..+|++++++++..++|++++++|+....
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV 80 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence 68999998 99999999988874 89999877765321 0 112 346899999999877899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.+..|+++|++.++==--+.+.+|..+|.+++++-.+
T Consensus 81 ~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~ 118 (184)
T d1ydwa1 81 EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 118 (184)
T ss_dssp HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred chhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence 99999999997654432245799999999999977544
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=2.7e-10 Score=88.26 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=86.0
Q ss_pred CceEEEEccCCCCcch-hhHHHHHh--CCeEeeecCCCCCC-e----EEcCccccccHHHHhhccCCcEEEEeeChHHHH
Q 030220 58 NTRVICQGITGKNGTF-HTEQAIEY--GTKMVGGVTPKKGG-T----EHLGLPVFNSVAEAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 58 ~~rViVvGatGkmG~~-~~k~~~~~--g~~IVagVdP~~~G-~----ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~ 129 (181)
..||.|+|+ |.+|+. +.+.+.+. .++|++..|+...- + ......+|++++|+++..++|++++++|+..-.
T Consensus 3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~ 81 (181)
T d1zh8a1 3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL 81 (181)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH
T ss_pred CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc
Confidence 468999998 999984 78877773 47899888876421 1 122345899999999877899999999999999
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
+.+.+|+++|++.++==--+.+.+|..+|.+++++-.
T Consensus 82 ~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~ 118 (181)
T d1zh8a1 82 PFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSE 118 (181)
T ss_dssp HHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred cccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence 9999999999665543335689999999999997754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.91 E-value=1.5e-09 Score=86.97 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=87.4
Q ss_pred eeccCCceEEEEccCCCCcc-hhhHHHHH-hCCeEeeecCCCCCC-eE---EcC-----ccccccHHHHhhccCCcEEEE
Q 030220 53 VFVDKNTRVICQGITGKNGT-FHTEQAIE-YGTKMVGGVTPKKGG-TE---HLG-----LPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~-~~~k~~~~-~g~~IVagVdP~~~G-~e---i~G-----vPVy~sl~e~~~~~~~DVaId 121 (181)
+--++..||.|+|+ |++|+ .+.+.+.. .+++|++.+|+.... .+ -.| +..|+|++|+++..++|++++
T Consensus 28 ~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I 106 (221)
T d1h6da1 28 MPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYI 106 (221)
T ss_dssp CCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEE
T ss_pred CCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeee
Confidence 44556789999999 99997 45566555 489999988876421 11 123 456889999988778999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 122 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++|+..-.+.+.+|+++|++.++==--..+.+|..+|.+++++-.+
T Consensus 107 ~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~ 152 (221)
T d1h6da1 107 ILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 152 (221)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred ccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999996544321135899999999999976554
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=8.9e-09 Score=78.68 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=80.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHh-C---CeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEY-G---TKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~-g---~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
...||+|+|+ |.+|+.+.+.+.+. + +.+++..++.... ...+.+ +.+++|+++..++|++++++|++.-.+.+
T Consensus 6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~~~~ 82 (172)
T d1lc0a1 6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI 82 (172)
T ss_dssp CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHHH-HhhccC-cCCHHHHHhCCCcchhhhccccccccccc
Confidence 4578999999 99999988877663 2 3344334444332 344555 44799998877899999999999999999
Q ss_pred HHHHHcCCCEEEEe-CCCCCHHHHHHHHHHhhhhch
Q 030220 133 MEAMEAELDLVVCI-TEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 ~eaie~GIk~IV~i-TtG~~~ed~~~l~~~ak~ipv 167 (181)
.+|+++|.+ |++= --..+.+|..+|.+++++-.+
T Consensus 83 ~~al~~gk~-V~~EKP~a~~~~e~~~l~~~a~~~~~ 117 (172)
T d1lc0a1 83 RQFLQAGKH-VLVEYPMTLSFAAAQELWELAAQKGR 117 (172)
T ss_dssp HHHHHTTCE-EEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred ccccccchh-hhcCCCccccHHHHHHHHHHHHHcCC
Confidence 999999976 5441 125789999999999976654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.75 E-value=6.3e-09 Score=79.03 Aligned_cols=106 Identities=7% Similarity=-0.004 Sum_probs=80.6
Q ss_pred CceEEEEccCCCCcc-hhhHHHHHh-CCeEeeecCCCCCC-eE---EcCc-cccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-TE---HLGL-PVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~~-g~~IVagVdP~~~G-~e---i~Gv-PVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
+.||.|+|+ |++|+ .+.+.+.+. +++++ .+|+.... .+ -.++ ++|++.+++++ .++|++++++|+..-.+
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~iD~V~I~tp~~~H~~ 77 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQ-YGVDAVMIHAATDVHST 77 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGG-GCCSEEEECSCGGGHHH
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccccccccHHHhcc-cccceeccccccccccc
Confidence 368999999 99997 466777664 77766 56655321 11 1344 58999999886 48999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhc
Q 030220 131 AIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILL 166 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ip 166 (181)
.+..|+++|++.++==--+.+.+|..+|.+++++-.
T Consensus 78 ~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~ 113 (167)
T d1xeaa1 78 LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHH 113 (167)
T ss_dssp HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccCCCCcCCHHHHHHHHHHHHHcC
Confidence 999999999885442224688999999999996543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.69 E-value=4.9e-08 Score=78.38 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=85.2
Q ss_pred cCCceEEEEccCCCC----cchhhHHHHH--hCCeEeeecCCCCCCe-----E--EcCccccccHHHHhhccCCcEEEEe
Q 030220 56 DKNTRVICQGITGKN----GTFHTEQAIE--YGTKMVGGVTPKKGGT-----E--HLGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 56 ~~~~rViVvGatGkm----G~~~~k~~~~--~g~~IVagVdP~~~G~-----e--i~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
.+..||.|+|+ |.+ ++.+.+.+.+ .+++|+|..||..... + +....+|++.+|+++..++|+++++
T Consensus 14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVS 92 (237)
T ss_dssp GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEEC
T ss_pred CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeecc
Confidence 45689999999 654 4577777766 3799999888764210 1 2345689999999987789999999
Q ss_pred eChHHHHHHHHHHHHcCC-----CEEEEeC-CCCCHHHHHHHHHHhhh
Q 030220 123 VPPPFAAAAIMEAMEAEL-----DLVVCIT-EGIPQHDMVINFTRVNI 164 (181)
Q Consensus 123 VPp~~a~~~~~eaie~GI-----k~IV~iT-tG~~~ed~~~l~~~ak~ 164 (181)
+|+....+.+..|+++|+ +.|+|=- =+.+.+|..+|.++|++
T Consensus 93 tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~ 140 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 140 (237)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhh
Confidence 999999999999999997 6777632 36789999999998854
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.52 E-value=1.1e-07 Score=71.17 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=76.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.|+|. |+||+.+.+.+.+.|++++. .|+...... -.|..+-.+.+|+.+ ++|++++++|++.+.++++++
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~diIi~~v~~~~~~~~~~~~ 76 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVT-SLEGRSPSTIERARTVGVTETSEEDVY--SCPVVISAVTPGVALGAARRA 76 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEE-CCTTCCHHHHHHHHHHTCEECCHHHHH--TSSEEEECSCGGGHHHHHHHH
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEEE-EcCchhHHHHHhhhcccccccHHHHHh--hcCeEEEEecCchHHHHHHhh
Confidence 58999999 99999999999999999774 443332111 135666778899988 899999999999999999888
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 136 MEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
...-=+.++. .+-.+.+...++.+.+++
T Consensus 77 ~~~~~~~~id-~st~~p~~~~~l~~~~~~ 104 (152)
T d1i36a2 77 GRHVRGIYVD-INNISPETVRMASSLIEK 104 (152)
T ss_dssp HTTCCSEEEE-CSCCCHHHHHHHHHHCSS
T ss_pred cccCCceeec-cCcCCHHHHHHHHHHHhc
Confidence 7664455555 555566666777777654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.47 E-value=2.9e-08 Score=75.03 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=74.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
+||.++|+ |+||+.+.+.+.+.+.++.. .-++.+..+ +-.|+.+..+.+|+.+ ++|+++++|+|+.+.+++++.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~~dvIilavkp~~~~~vl~~l 77 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLKPL 77 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHTTS
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhh--ccceeeeecchHhHHHHhhhc
Confidence 57999999 99999999999988888653 223322110 1248888889999988 899999999999998887764
Q ss_pred HHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 136 MEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 136 ie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
..=+.|+.++.|++.+++++..
T Consensus 78 --~~~~~iis~~agi~~~~l~~~l 99 (152)
T d2ahra2 78 --HFKQPIISMAAGISLQRLATFV 99 (152)
T ss_dssp --CCCSCEEECCTTCCHHHHHHHH
T ss_pred --ccceeEecccccccHHHHHhhh
Confidence 2345688889999988877654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.36 E-value=5e-08 Score=73.24 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=72.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC-e---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-T---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G-~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
+||.++|+ |+||+...+.+.+.| .++. ..|++..- + +-.|+.++++.+++ . ++|+++++|+|+.+.++++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~~~~~~l~~~~~~~~~~~~~~v-~--~~Div~lavkP~~~~~v~~ 75 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPEL-H--SDDVLILAVKPQDMEAACK 75 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCC-C--TTSEEEECSCHHHHHHHHT
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCChhHHHHhhhhcccccccccccc-c--ccceEEEecCHHHHHHhHH
Confidence 57999999 999999999888876 5554 55655421 1 12478888887764 3 6899999999999998888
Q ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 134 EAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 134 eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
+.... =+.++.+..|++.+++.+..
T Consensus 76 ~l~~~-~~~viS~~ag~~~~~l~~~l 100 (152)
T d1yqga2 76 NIRTN-GALVLSVAAGLSVGTLSRYL 100 (152)
T ss_dssp TCCCT-TCEEEECCTTCCHHHHHHHT
T ss_pred HHhhc-ccEEeecccCCCHHHHHHHh
Confidence 76433 46788889999998877654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.31 E-value=4.6e-07 Score=68.04 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=71.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcC-ccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLG-LPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~G-vPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
+||.|+|+ |+||+...+.+.+.|++|+ +.|+.....+ -.| +..+.+..+..+ ++|++|+++|++...+++++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~-~~d~~~~~~~~a~~~~~~~~~~~~~~~~~--~~DiIilavp~~~~~~vl~~ 76 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLLQ--TAKIIFLCTPIQLILPTLEK 76 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGGT--TCSEEEECSCHHHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCchHHHHHHHhhccceeeeeccccc--ccccccccCcHhhhhhhhhh
Confidence 58999999 9999999999999999987 5676542111 022 222333334555 79999999999999999999
Q ss_pred HHHc-CCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 135 AMEA-ELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 135 aie~-GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
..+. .-..+|+-+.+........+.+....
T Consensus 77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~ 107 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVASVKTAIAEPASQLWSG 107 (165)
T ss_dssp HGGGSCTTCEEEECCSCCHHHHHHHHHHSTT
T ss_pred hhhhcccccceeeccccchHHHHHHHHhhcc
Confidence 8876 33334444667777777766665543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.26 E-value=3.6e-07 Score=71.73 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=68.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe---------E------------EcCccccccHHHHhhccC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------E------------HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~---------e------------i~GvPVy~sl~e~~~~~~ 115 (181)
|.||.|.|+ |++|+.+.+.+.+. ++++|+..|+..... . -.++++...+.+..+ +
T Consensus 1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~--~ 77 (178)
T d1b7go1 1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--T 77 (178)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--H
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh--c
Confidence 568999998 99999999998885 899998766543110 0 136788888888876 7
Q ss_pred CcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030220 116 ANASVIYVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 116 ~DVaIdfVPp~~a~~~~~eaie~GIk~IV 144 (181)
+|++|+++|.-...+.++..+++|+|.|+
T Consensus 78 vDiViecTG~f~~~e~a~~hl~~G~KvIi 106 (178)
T d1b7go1 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIF 106 (178)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEECCCCcCCHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999976554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.14 E-value=6.5e-06 Score=61.81 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=71.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE--EcCccccccHHHHhhccCCcEEEEeeCh-HHHHHHH--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAI-- 132 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~-- 132 (181)
+||.++|. |+||+..++.+.+.|+++. +.|....- ++ -.|..+..+.+|+.+ ++|++++++|. +.+.+++
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~d~ii~~v~~~~~v~~v~~~ 76 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALG 76 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEE-EEeCCcchhHHHHHhhhhhcccHHHHHh--CCCeEEEEcCCHHHHHHHHhC
Confidence 57999999 9999999999999999976 44543211 11 147788889999988 79999999974 4444444
Q ss_pred -HHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 133 -MEAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 133 -~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
+.++..- =+.|+..|| .+.+...++.+..++..+
T Consensus 77 ~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~ 113 (161)
T d1vpda2 77 ENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAKGV 113 (161)
T ss_dssp TTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTC
T ss_pred CcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCC
Confidence 2233321 244666455 566777777777765433
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.02 E-value=2.1e-06 Score=66.75 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE----------------------EcCccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----------------------HLGLPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e----------------------i~GvPVy~sl~e~~~~~ 114 (181)
..||.|.|+ |++|+.+.+.+.+. ++++|+..|+...... ..++++..++.++.+
T Consensus 2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (172)
T d2czca2 2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE-- 78 (172)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--
Confidence 368999999 99999999988874 8999987665432110 024555556666655
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
++|++|++++.-...+.++.-+++|+|.|+.
T Consensus 79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~ 109 (172)
T d2czca2 79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ 109 (172)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCEEEEC
T ss_pred cCCEEEECCCCCCCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999999999999988875
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.02 E-value=1.3e-06 Score=69.23 Aligned_cols=94 Identities=24% Similarity=0.358 Sum_probs=76.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC---eEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G---~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ 133 (181)
++++|+|+|+ |.+|+.+..++++.|++|+-|+-++... -+-.|+.|+ +++|+.+ +.|++++.+|.+.-.++-+
T Consensus 15 k~k~IaViGY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~--~aDiim~L~PD~~q~~vy~ 90 (182)
T d1np3a2 15 QGKKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLYK 90 (182)
T ss_dssp HTSCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHHH
T ss_pred CCCEEEEEee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhh--hcCeeeeecchHHHHHHHH
Confidence 3467999999 9999999999999999988787765421 123689987 6788887 8999999999887777777
Q ss_pred HHHHcCCCE--EEEeCCCCCHHH
Q 030220 134 EAMEAELDL--VVCITEGIPQHD 154 (181)
Q Consensus 134 eaie~GIk~--IV~iTtG~~~ed 154 (181)
+-++-..+. .++|+-||+.|.
T Consensus 91 ~~I~p~lk~g~~L~FaHGfnIh~ 113 (182)
T d1np3a2 91 EEIEPNLKKGATLAFAHGFSIHY 113 (182)
T ss_dssp HHTGGGCCTTCEEEESCCHHHHT
T ss_pred HhhhhhcCCCcEEEEeccceEEe
Confidence 777765554 888999999875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.95 E-value=3.3e-05 Score=57.91 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=74.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe---EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~---ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
++||.++|. |.||...++.+.+.|+++. +.|...... ...|..+..++.|+.+ ++|++++++|...+.+.+..
T Consensus 1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHT--SCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEEE-HHHHHHHHHHHHHCCCeEE-EEECchhhhhhhhhhhccccchhhhhcc--ccCeeeecccchhhHHHHHh
Confidence 468999999 9999999999999999965 445432110 1246677788999888 89999999998877665532
Q ss_pred ----HHHcCC--CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 135 ----AMEAEL--DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 135 ----aie~GI--k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.....- +.|+. ++-.+.++..++.+.+++.-+
T Consensus 77 ~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~gi 114 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGL 114 (162)
T ss_dssp STTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHTTC
T ss_pred ccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCC
Confidence 233222 34555 666777788888888766544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.94 E-value=4e-05 Score=56.86 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=65.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC--------Ce----------EEcCccccccHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------GT----------EHLGLPVFNSVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~--------G~----------ei~GvPVy~sl~e~~~~~~~DVa 119 (181)
++||+|+|+ |.||......+.+.|.++. .+++... +. ......+..+++|+++ ++|++
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aD~i 76 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVI 76 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEE
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc--CCCEE
Confidence 368999999 9999999999999999876 3443210 00 0122344567899888 89999
Q ss_pred EEeeChHHHHHHHHHHHHc-CCCEEEEeCCCCCHH
Q 030220 120 VIYVPPPFAAAAIMEAMEA-ELDLVVCITEGIPQH 153 (181)
Q Consensus 120 IdfVPp~~a~~~~~eaie~-GIk~IV~iTtG~~~e 153 (181)
++++|+....++++++..+ .-..+|..+.|..-.
T Consensus 77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~ 111 (184)
T d1bg6a2 77 LIVVPAIHHASIAANIASYISEGQLIILNPGATGG 111 (184)
T ss_dssp EECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSH
T ss_pred EEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCcc
Confidence 9999999999999888766 222344446665443
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.93 E-value=4e-06 Score=65.12 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=64.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe---------EE-------------cCccccccHHHHhhcc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EH-------------LGLPVFNSVAEAKAET 114 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~---------ei-------------~GvPVy~sl~e~~~~~ 114 (181)
|.||.|-|+ |+.|+.+.+.+.+. ++++|+..|+..... .+ .++++..+..++.+
T Consensus 1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-- 77 (171)
T d1cf2o1 1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-- 77 (171)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--
Confidence 578999999 99999999988775 799998655432111 00 24555556666655
Q ss_pred CCcEEEEeeChHHHHHHHHHHHHcCCCEEE
Q 030220 115 KANASVIYVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 115 ~~DVaIdfVPp~~a~~~~~eaie~GIk~IV 144 (181)
++|++|+++|.-...+.++.-+++|+|.|+
T Consensus 78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi 107 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIF 107 (171)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Confidence 799999999999999999999999987554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=4.4e-05 Score=58.36 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCe-EEcCcccc-------ccHHHHhhccCCcEEEEeeCh---
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT-EHLGLPVF-------NSVAEAKAETKANASVIYVPP--- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~-ei~GvPVy-------~sl~e~~~~~~~DVaIdfVPp--- 125 (181)
++||+|.|+||..|+.+++.+++.|+++++.+ ||.+... .-.++.++ .+++++++ ++|++|.++.+
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~~ 80 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND 80 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCCc
Confidence 57899999999999999999999999988764 3332110 01222222 34666666 78999987743
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --------~~a~~~~~eaie~GIk~IV~iT 147 (181)
..+..+++.+.++|++.++.++
T Consensus 81 ~~~~~~~~~~~~~l~~aa~~~~v~r~i~~s 110 (205)
T d1hdoa_ 81 LSPTTVMSEGARNIVAAMKAHGVDKVVACT 110 (205)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred hhhhhhhHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3466778888899999987765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.82 E-value=4.8e-05 Score=55.91 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=71.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie 137 (181)
..||.|+|+.|.||+...+.+.+.|+++. +.|.... .+.++..+ ++|.+++.+|.....+++++...
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~~~~----------~~~~~~~~--~~~~v~~~~~~~~~~~v~~~~~~ 75 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDREDW----------AVAESILA--NADVVIVSVPINLTLETIERLKP 75 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTCG----------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcE-ecccccc----------cccchhhh--hccccccccchhhheeeeecccc
Confidence 46899999669999999999999999876 4554431 23345555 79999999999999999999987
Q ss_pred cCC-CEEEEeCCCCCHHHHHHHHHHh
Q 030220 138 AEL-DLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 138 ~GI-k~IV~iTtG~~~ed~~~l~~~a 162 (181)
.-- ..++.-++.+..+-..++.+..
T Consensus 76 ~~~~~~iiiD~~Svk~~~~~~~~~~~ 101 (152)
T d2pv7a2 76 YLTENMLLADLTSVKREPLAKMLEVH 101 (152)
T ss_dssp GCCTTSEEEECCSCCHHHHHHHHHHC
T ss_pred cccCCceEEEecccCHHHHHHHHHHc
Confidence 733 3355557788888888887754
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.81 E-value=1.8e-05 Score=59.33 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=67.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCeEEc----CccccccHHHHhhccCCcEEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~ei~----GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~ 130 (181)
.+||+|+|+||--|++..+.+.+. .++++..-.....|+.+. .+++.+.-.+..+ ++|+++.+.|...+.+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~--~~d~vf~a~p~~~s~~ 79 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFS--SVGLAFFAAAAEVSRA 79 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGG--GCSEEEECSCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhc--cceEEEecCCcchhhh
Confidence 478999999999999999988653 567776556666665542 2333322222223 7999999999999999
Q ss_pred HHHHHHHcCCCEEEEeCCCCCH
Q 030220 131 AIMEAMEAELDLVVCITEGIPQ 152 (181)
Q Consensus 131 ~~~eaie~GIk~IV~iTtG~~~ 152 (181)
.+..+.++|++.|=. +.-|..
T Consensus 80 ~~~~~~~~g~~VID~-Ss~fR~ 100 (144)
T d2hjsa1 80 HAERARAAGCSVIDL-SGALEP 100 (144)
T ss_dssp HHHHHHHTTCEEEET-TCTTTT
T ss_pred hccccccCCceEEee-chhhcc
Confidence 999999999876644 766654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.79 E-value=1e-05 Score=63.07 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=69.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecC-------------CCC-CCeEE-cCccccccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVT-------------PKK-GGTEH-LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVd-------------P~~-~G~ei-~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+.||+|+|+ |.||++.+..+.+.|-+|.- +.| |.. .+.++ ..+.+..+++++++ ++|++++
T Consensus 7 m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~--~ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILF 83 (189)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSCEEE
T ss_pred eceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC--CCCEEEE
Confidence 468999999 99999999988887666442 222 111 01111 24667778999988 8999999
Q ss_pred eeChHHHHHHHHHH--------HHcCCCEEEEeCCCCCHHHHHHHHH
Q 030220 122 YVPPPFAAAAIMEA--------MEAELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 122 fVPp~~a~~~~~ea--------ie~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
.||.....+++++. +..+...|.+ |-||.......+.|
T Consensus 84 avPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~-tKGie~~t~~~~se 129 (189)
T d1n1ea2 84 VIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC-TKGIERSTLKFPAE 129 (189)
T ss_dssp CSCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC-CCSCCTTTCCCHHH
T ss_pred cCcHHHHHHHHHHHHhhhhhhhccCCcEEEEE-ECCCccCCccchhh
Confidence 99999999988775 4567777666 88886554333333
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.76 E-value=3.2e-05 Score=57.53 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=69.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeE---EcCc--cccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGL--PVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~e---i~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
++||.|+|+ |.||..+.+.+.+.|+. -|.++|++....+ -.|+ .+..+.++.. ..++|++++++|++.+.++
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~dlIila~p~~~~~~v 78 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVE-DFSPDFVMLSSPVRTFREI 78 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGG-GTCCSEEEECSCHHHHHHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhh-ccccccccccCCchhhhhh
Confidence 457999999 99999999999998763 2446777652211 1232 2333444332 2379999999999999999
Q ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHh
Q 030220 132 IMEAMEA-ELDLVVCITEGIPQHDMVINFTRV 162 (181)
Q Consensus 132 ~~eaie~-GIk~IV~iTtG~~~ed~~~l~~~a 162 (181)
+++.... .-..++.-+.+....-..++++..
T Consensus 79 l~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~ 110 (171)
T d2g5ca2 79 AKKLSYILSEDATVTDQGSVKGKLVYDLENIL 110 (171)
T ss_dssp HHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccHHHHHHHHHhh
Confidence 9998765 444565556666665555555543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=5.1e-05 Score=55.40 Aligned_cols=92 Identities=10% Similarity=0.092 Sum_probs=64.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE---------cCccccccHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---------LGLPVFNSVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei---------~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
+||+|+|+ |.||+.....+.+.|.++.. ++...... .. ....+..+..+... ++|++++++++...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~iii~vka~~~ 76 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQG-WLRVPQPYCSVNLVETDGSIFNESLTANDPDFLA--TSDLLLVTLKAWQV 76 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEE-ECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHH--TCSEEEECSCGGGH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEE-EEcCHHHhhhhccccCCccccccccccchhhhhc--ccceEEEeecccch
Confidence 68999999 99999999999998998764 33322211 11 11223334455555 79999999999999
Q ss_pred HHHHHHHHHcC--CCEEEEeCCCCCHHH
Q 030220 129 AAAIMEAMEAE--LDLVVCITEGIPQHD 154 (181)
Q Consensus 129 ~~~~~eaie~G--Ik~IV~iTtG~~~ed 154 (181)
.++++.+...- =..|+.+..|+..++
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred HHHHHhhccccCcccEEeeccCcccHHH
Confidence 99998887642 233666689997665
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.70 E-value=1.9e-05 Score=60.25 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=62.4
Q ss_pred cCCceEEEEccCCCCcch-hhHHHHHh-CCeEeeecCCCCCCe-----EEcCcccccc-HHHHhh---ccCCcEEEEeeC
Q 030220 56 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT-----EHLGLPVFNS-VAEAKA---ETKANASVIYVP 124 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~-~~k~~~~~-g~~IVagVdP~~~G~-----ei~GvPVy~s-l~e~~~---~~~~DVaIdfVP 124 (181)
.+..||.|+| +|++|+. +.+.+.+. .+++++..+.+..+. +-.|+|++.+ ++++.+ ..++|++++.+|
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp 80 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence 3568999999 5999985 56666553 778888766544331 2258888774 665543 236899999999
Q ss_pred hHHHHH--HHHHHHHcCCCEEEE
Q 030220 125 PPFAAA--AIMEAMEAELDLVVC 145 (181)
Q Consensus 125 p~~a~~--~~~eaie~GIk~IV~ 145 (181)
+....+ -+..+.++|+..|-.
T Consensus 81 ag~h~~~~~~~~aa~~G~~VID~ 103 (157)
T d1nvmb1 81 ASAHVQNEALLRQAKPGIRLIDL 103 (157)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEC
T ss_pred chhHHHhHHHHHHHHcCCEEEEc
Confidence 876655 446668889887766
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=4.7e-05 Score=57.49 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=61.2
Q ss_pred CceEEEEccCCCCcchhhHHHHH-h---CCeEeeecCCCCCCeEE----cCccccccHH-HHhhccCCcEEEEeeChHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-Y---GTKMVGGVTPKKGGTEH----LGLPVFNSVA-EAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~---g~~IVagVdP~~~G~ei----~GvPVy~sl~-e~~~~~~~DVaIdfVPp~~a 128 (181)
|+||+|+|+||--|+...+.+++ . -.++++.-.....|..+ ..+++....+ +..+ ++|+++.++|.+.+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~--~~DivF~a~~~~~s 78 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGDYT 78 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHH--TCSEEEECSCHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhh--cCcEEEEecCchHH
Confidence 46899999999999999986654 2 34455443333333222 1233333222 1233 79999999999999
Q ss_pred HHHHHHHHHcCCCEE-EEeCCCCC
Q 030220 129 AAAIMEAMEAELDLV-VCITEGIP 151 (181)
Q Consensus 129 ~~~~~eaie~GIk~I-V~iTtG~~ 151 (181)
.+.+.++.++|.+.+ +--+.-|.
T Consensus 79 ~~~~~~~~~~g~~~~VID~Ss~fR 102 (146)
T d1t4ba1 79 NEIYPKLRESGWQGYWIDAASSLR 102 (146)
T ss_dssp HHHHHHHHHTTCCCEEEECSSTTT
T ss_pred HHhhHHHHhcCCCeecccCCcccc
Confidence 999999999999744 44344443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.67 E-value=2.6e-05 Score=59.69 Aligned_cols=101 Identities=9% Similarity=0.039 Sum_probs=71.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeec--C-CCCCCeEEc----------Cccccc--cHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV--T-PKKGGTEHL----------GLPVFN--SVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagV--d-P~~~G~ei~----------GvPVy~--sl~e~~~~~~~DVaId 121 (181)
|+||+|+|+||--|++..+.+.+. .++|.... . .+..|+.+. .+++.. +..+.. .++|+++.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvvf~ 78 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS--ADVDVVFL 78 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC--TTCCEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh--cccceeec
Confidence 579999999999999999999995 89887542 2 223343221 111111 222222 37999999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 122 YVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
+.|+..+.+.+..+.+.|++.|=. +..|..+|....++.
T Consensus 79 alp~~~s~~~~~~~~~~~~~vIDl-SadfRl~~~~~~~~~ 117 (179)
T d2g17a1 79 ATAHEVSHDLAPQFLQAGCVVFDL-SGAFRVNDRAFYEKY 117 (179)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEC-SSTTSSSCHHHHHHH
T ss_pred cccchhHHHHhhhhhhcCceeecc-ccccccccccccccc
Confidence 999999999999999999888765 877776665554433
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.65 E-value=5.9e-05 Score=57.21 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=62.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHh----CCeEeeecCCCCCCeEEc----CccccccHH-HHhhccCCcEEEEeeChHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHL----GLPVFNSVA-EAKAETKANASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~----g~~IVagVdP~~~G~ei~----GvPVy~sl~-e~~~~~~~DVaIdfVPp~~a~ 129 (181)
+||.|+|+||--|+..++.+.+. ..+++..-.....|+... ...++...+ +..+ ++|+++.++|...+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~--~~DvvF~alp~~~s~ 78 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYTE 78 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhc--cccEEEEecCchHHH
Confidence 58999999999999999987752 356664434444343221 123332222 2234 799999999999999
Q ss_pred HHHHHHHHcCCCE-EEEeCCCCC
Q 030220 130 AAIMEAMEAELDL-VVCITEGIP 151 (181)
Q Consensus 130 ~~~~eaie~GIk~-IV~iTtG~~ 151 (181)
+.+..+.++|.+. ||=.+.-|.
T Consensus 79 ~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 79 KVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp HHHHHHHHTTCCSEEEESSSTTT
T ss_pred HHhHHHHHcCCceEEEeCCcccc
Confidence 9999999999984 554455443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.54 E-value=0.00028 Score=51.17 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=70.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----Ec-----Cccccc--cHHHHhhccCCcEEEEeeCh
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HL-----GLPVFN--SVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i~-----GvPVy~--sl~e~~~~~~~DVaIdfVPp 125 (181)
.+||+|+|+ |.||+.+++.+.+.|.+|+ .+|+.... ++ .. +..... ..++.+. ..|+.+..+|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~-v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~ 77 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPY 77 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEE-EEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECSCG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECChHHHHHHHhcccccccccccccchhhhHhhhh--ccceeEeeccc
Confidence 468999999 9999999999999899855 44433211 01 11 111222 3445555 78999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
......+..+.+.+...+ +.....+++..+.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 113 (182)
T d1e5qa1 78 TFHATVIKSAIRQKKHVV---TTSYVSPAMMELDQAAKD 113 (182)
T ss_dssp GGHHHHHHHHHHHTCEEE---CSSCCCHHHHHTHHHHHH
T ss_pred hhhhHHHHHHHhhcccee---ecccCcHHHHHHHHHhcc
Confidence 999999999999987653 444556677777777654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.53 E-value=0.00016 Score=54.68 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=68.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEE----------cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEH----------LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei----------~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
+.+|.++|. |+||...++.+.+.|+++++ ..+|.+.. ++ .|.....++.+... ++|+++.++|+.
T Consensus 2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~ 77 (176)
T d2pgda2 2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVD-DFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAG 77 (176)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHH-HHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTT
T ss_pred CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHH-HHHHhccccccccchhhhhhhhhhhc--ccceEEEecCch
Confidence 467999999 99999999999999999763 23343211 11 12222334444444 789988888875
Q ss_pred -HHHHHHHHHHHcCCC-EEEEeCCCCCHHHHHHHHHHhhhhchh
Q 030220 127 -FAAAAIMEAMEAELD-LVVCITEGIPQHDMVINFTRVNILLVA 168 (181)
Q Consensus 127 -~a~~~~~eaie~GIk-~IV~iTtG~~~ed~~~l~~~ak~ipv~ 168 (181)
.+.++.+.++..--+ .+|+-++-...++..++.+..++.-+.
T Consensus 78 ~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~ 121 (176)
T d2pgda2 78 QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121 (176)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc
Confidence 556666666554322 244446677777778887777665443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.40 E-value=0.00025 Score=53.94 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=63.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-e--cCCCC--------C----CeEEcC--ccccccHHHHhhccCCcEEEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-G--VTPKK--------G----GTEHLG--LPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-g--VdP~~--------~----G~ei~G--vPVy~sl~e~~~~~~~DVaId 121 (181)
+||.|+|+ |.||...+..+.+.|.++.- + .|+.. . +..+.+ +-..++++++.+ ++|++++
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVVLL 77 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh--ccchhhc
Confidence 58999999 99999999999888777542 1 12110 0 001111 233457888887 8999999
Q ss_pred eeChHHHHHHHHHHHHc-CCCEEEEeCCCCC
Q 030220 122 YVPPPFAAAAIMEAMEA-ELDLVVCITEGIP 151 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~-GIk~IV~iTtG~~ 151 (181)
.||+....++++++... .-+.++..|.|+-
T Consensus 78 avps~~~~~~~~~l~~~l~~~~ii~~tkg~~ 108 (180)
T d1txga2 78 GVSTDGVLPVMSRILPYLKDQYIVLISKGLI 108 (180)
T ss_dssp CSCGGGHHHHHHHHTTTCCSCEEEECCCSEE
T ss_pred ccchhhhHHHHHhhccccccceecccccCcc
Confidence 99999999999998765 3345666688873
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.36 E-value=0.00024 Score=57.58 Aligned_cols=99 Identities=8% Similarity=0.075 Sum_probs=73.7
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhC------CeEeeecCCCCCCe---EEcCccccc----cHHHHhhccCCcEEEEe
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYG------TKMVGGVTPKKGGT---EHLGLPVFN----SVAEAKAETKANASVIY 122 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g------~~IVagVdP~~~G~---ei~GvPVy~----sl~e~~~~~~~DVaIdf 122 (181)
.-+++|+|+|+ |.+|+++..++++.| .+++-|+.++..-- +-.|+.+.+ +++|+.+ +.|++++.
T Consensus 42 kg~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~--~ADiVmiL 118 (226)
T d1qmga2 42 KGIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETIS--GSDLVLLL 118 (226)
T ss_dssp TTCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHH--TCSEEEEC
T ss_pred cCCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHh--hCCEEEEe
Confidence 34468999999 999999999999954 66776777654221 125777543 6888887 89999999
Q ss_pred eChHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHH
Q 030220 123 VPPPFAAAAIMEAMEAELD--LVVCITEGIPQHDMVIN 158 (181)
Q Consensus 123 VPp~~a~~~~~eaie~GIk--~IV~iTtG~~~ed~~~l 158 (181)
+|.+.-.++-++ ++-.++ ..++|+-||+.+....+
T Consensus 119 lPDe~Q~~vy~~-I~p~Lk~G~~L~FaHGFnI~~~~~~ 155 (226)
T d1qmga2 119 ISDSAQADNYEK-VFSHMKPNSILGLSHGFLLGHLQSL 155 (226)
T ss_dssp SCHHHHHHHHHH-HHHHSCTTCEEEESSSHHHHHHHHH
T ss_pred cchHHHHHHHHH-HHHhcCCCceeeecchhhhhhceee
Confidence 999988888876 443333 37889999988765443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.24 E-value=0.00026 Score=54.74 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=50.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+.+.+...|+++. +.||.... .....+.+++|+++ ++|++++.+|-.
T Consensus 42 gk~vgIiG~-G~IG~~va~~l~~~g~~v~-~~d~~~~~---~~~~~~~~l~ell~--~sDiv~~~~pl~ 103 (181)
T d1qp8a1 42 GEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTPKE---GPWRFTNSLEEALR--EARAAVCALPLN 103 (181)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSCCC---SSSCCBSCSHHHHT--TCSEEEECCCCS
T ss_pred CceEEEecc-ccccccceeeeeccccccc-cccccccc---cceeeeechhhhhh--ccchhhcccccc
Confidence 467999999 9999999999999999977 56766532 23456779999998 899999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.00021 Score=52.88 Aligned_cols=105 Identities=12% Similarity=-0.088 Sum_probs=62.3
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH-HHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-AAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~-a~~~~~eaie~ 138 (181)
||.++|. |+||...++.+.+.|+.+++--++.+........-...+..+... ++|+.+..+|... +......+++.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~v~~~~~~l~~~ 78 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVA--EARVIFTCLPTTREVYEVAEALYPY 78 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCCEECCGGGGG--GCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCCccccccccc--ceeEEEecccchhhhhhhhcccccc
Confidence 6999999 999999999999888876643222221111111112223233334 5787777776654 44444444444
Q ss_pred CC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 139 EL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 139 GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.- ..+++-++-.+.++..++.+.+++.-+
T Consensus 79 ~~~~~~iid~sT~~p~~~~~~~~~~~~~gi 108 (156)
T d2cvza2 79 LREGTYWVDATSGEPEASRRLAERLREKGV 108 (156)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred ccccccccccccCCHHHHHHHHHHHHHcCC
Confidence 32 224444777788888888887765433
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.11 E-value=0.00018 Score=53.86 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=66.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCe---EeeecCCCCCCeEEc----CccccccHHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEHL----GLPVFNSVAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~---IVagVdP~~~G~ei~----GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
.||+|+|+||--|++..+.+.+..+. +...-+.+..|+.+. .++++...++... +.|+++...|+..+.+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~--~~d~~f~~~~~~~s~~~ 79 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKY 79 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhh--hhhhhhhccCccchhhH
Confidence 48999999999999999988776542 433334444454431 2334443444333 78999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCHHH
Q 030220 132 IMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 132 ~~eaie~GIk~IV~iTtG~~~ed 154 (181)
+.++.+.|++.|=. +.-|..++
T Consensus 80 ~~~~~~~~~~VIDl-SsdfR~~~ 101 (154)
T d2gz1a1 80 APYAVKAGVVVVDN-TSYFRQNP 101 (154)
T ss_dssp HHHHHHTTCEEEEC-SSTTTTCT
T ss_pred Hhhhccccceehhc-ChhhhccC
Confidence 99999999988765 66665443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00023 Score=55.11 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=71.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc--------Cccccc-cHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL--------GLPVFN-SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~--------GvPVy~-sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
|.||+|+|+||--|++.++.+.+. .++|+........|+.+. ...+.. +.+++.+ ++|++....|...
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~--~~dvvf~a~p~~~ 78 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAGA 78 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTTH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc--ccceEEEccccHH
Confidence 579999999999999999998884 888887766555564331 122222 4556555 6999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 030220 128 AAAAIMEAMEAELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.+... .|++ ||-.+..|.-+|....++
T Consensus 79 s~~~~~~~--~~~~-VIDlSadfRl~~~~~y~~ 108 (176)
T d1vkna1 79 SYDLVREL--KGVK-IIDLGADFRFDDPGVYRE 108 (176)
T ss_dssp HHHHHTTC--CSCE-EEESSSTTTCSSHHHHHH
T ss_pred HHHHHHhh--ccce-EEecCccccccchhhHHH
Confidence 99888753 5654 566688888776554443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=96.94 E-value=0.00074 Score=58.13 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC--CCCeEEcCcccccc--HHHHhhccCCcEEEEeeChHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGLPVFNS--VAEAKAETKANASVIYVPPPFAAAAI 132 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~--~~G~ei~GvPVy~s--l~e~~~~~~~DVaIdfVPp~~a~~~~ 132 (181)
+.++|++.|+ |..|+...+.+.+.|.+++|.+|-. +.|+.+.|+||.+. +.+..+...-.+.|++.-+.......
T Consensus 37 ~~~~~~l~g~-~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 115 (395)
T d2py6a1 37 NATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTELATHDRDLVALNTCRYDGPKRFF 115 (395)
T ss_dssp GGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHH
T ss_pred CCceEEEEcC-chhHHHHHHHHHHCCceEEEEecCchhhcCceecceEeecHHHhhhhhhccCcEEEEEeccccchhhHH
Confidence 4468999999 9999999999999999999999943 45678999999974 33433332334677777666666555
Q ss_pred -HHHHHcCCCEEE
Q 030220 133 -MEAMEAELDLVV 144 (181)
Q Consensus 133 -~eaie~GIk~IV 144 (181)
..+..+|++.+.
T Consensus 116 ~~~~~~~~~~~~~ 128 (395)
T d2py6a1 116 DQICRTHGIPHLN 128 (395)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHhcCCcccc
Confidence 445567988764
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.90 E-value=0.00017 Score=55.60 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=69.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE--------------------------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e--------------------------i~G--vPVy~--sl 107 (181)
+||.|-|+ ||.|+.+.+.+.+. ++++|+.-||...-.. +.| ++++. ++
T Consensus 1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p 79 (166)
T d2b4ro1 1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP 79 (166)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence 58999999 99999999998885 8999987777542210 122 45564 57
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++ ++.++|+++.++-.-...+.+..-+++|++.|+. |.
T Consensus 80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-SA 120 (166)
T d2b4ro1 80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM-SA 120 (166)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SS
T ss_pred HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEE-ec
Confidence 7764 4458999999999988889999999999999998 54
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.90 E-value=0.0028 Score=48.90 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-E---------EcCccccc-------cHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E---------HLGLPVFN-------SVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-e---------i~GvPVy~-------sl~e~~~~~~~DVa 119 (181)
+.+||+|.|+||..|+.+++.+.+.|.+|++.+.+..... . -.++.+.. ++.+... ++++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~--~~~~~ 79 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVV 79 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc--Ccchh
Confidence 5688999999999999999999999999987654322110 0 01222221 2444444 67888
Q ss_pred EEeeChH-------HHHHHHHHHHHcCCCEEEEeC
Q 030220 120 VIYVPPP-------FAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 120 IdfVPp~-------~a~~~~~eaie~GIk~IV~iT 147 (181)
+.+.++. .....++.|.+++....+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~S 114 (312)
T d1qyda_ 80 ISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114 (312)
T ss_dssp EECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECS
T ss_pred hhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEe
Confidence 8776543 456677788888766666544
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.90 E-value=0.0014 Score=53.00 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=58.7
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--E-------EcCccccccHHHHhhccCCcEEEEeeCh
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--E-------HLGLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--e-------i~GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
..+++||+|.|++|-+|+.+++.+++.|.+|++.-....... . ..++.-...+.++.+ ++|.++.+...
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~~ 89 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAAD 89 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeecccc
Confidence 457899999999999999999999999999885422211110 0 112222223444444 78988865511
Q ss_pred -------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 -------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 -------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.++|++.+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~S 130 (363)
T d2c5aa1 90 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130 (363)
T ss_dssp CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cccccccccccccccccccchhhHHHHhHHhhCcccccccc
Confidence 1134567788899999877544
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=96.88 E-value=0.00022 Score=55.00 Aligned_cols=87 Identities=16% Similarity=0.033 Sum_probs=67.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-------------------------EEcC--ccccc--cHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-------------------------EHLG--LPVFN--SVAE 109 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-------------------------ei~G--vPVy~--sl~e 109 (181)
+||.|-|+ ||.|+.+.+.+.+.++++|+..|+..... .+.| ++++. ++++
T Consensus 1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~ 79 (168)
T d2g82a1 1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE 79 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence 58999999 99999999988888999998766642110 0122 46666 4666
Q ss_pred Hh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 110 AK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 110 ~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++ ++.++|++++++-.....+.+..-++.|++.|+. |
T Consensus 80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-S 117 (168)
T d2g82a1 80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII-T 117 (168)
T ss_dssp CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE-S
T ss_pred CcccccCCceeEeccccccchHHhhhhhccccceeee-c
Confidence 64 3458999999999888888888899999999998 5
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=1.2e-05 Score=59.18 Aligned_cols=91 Identities=9% Similarity=-0.002 Sum_probs=56.4
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE---EcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
|-++|+ |+||+..++.+.+ ++.++...|+.... ++ ..+. .+.+++|+.+ +.|+++++||++...+++.++-
T Consensus 2 IgfIG~-G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~-~~~~~~~~~~--~~DiVil~v~d~~i~~v~~~l~ 76 (153)
T d2i76a2 2 LNFVGT-GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVANHLN 76 (153)
T ss_dssp CEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTTTC
T ss_pred EEEEeC-cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccc-cccchhhhhc--cCcEEEEeccchhhhHHHhhhc
Confidence 457898 9999998887765 44544334443211 11 1233 4557777776 7899999999999998887653
Q ss_pred HcCCCEEEEeCCCCCHHHHHH
Q 030220 137 EAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 137 e~GIk~IV~iTtG~~~ed~~~ 157 (181)
..=+.|+-++++.+.+.+..
T Consensus 77 -~~~~ivi~~s~~~~~~~l~~ 96 (153)
T d2i76a2 77 -LGDAVLVHCSGFLSSEIFKK 96 (153)
T ss_dssp -CSSCCEEECCSSSCGGGGCS
T ss_pred -ccceeeeecccchhhhhhhh
Confidence 23356777788888665543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.88 E-value=0.00015 Score=55.76 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=64.0
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeEEc---------CccccccHHHHhhccCCcEEEEeeCh
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---------GLPVFNSVAEAKAETKANASVIYVPP 125 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~ei~---------GvPVy~sl~e~~~~~~~DVaIdfVPp 125 (181)
.++.||+|+|+||--|++.++.+.+. .++++..-.....|+.+. ..+.+....+.. ..++|+++..+|.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dvvf~alp~ 81 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDAD-FSNVDAVFCCLPH 81 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCC-GGGCSEEEECCSS
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhh-hcccceeeecccc
Confidence 45689999999999999999999985 889877655555564431 222333222221 1279999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 126 PFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
..+.+.+..+.+.+ +.|.. ..++.
T Consensus 82 ~~s~~~~~~l~~~~-~~v~~-~~~~~ 105 (183)
T d2cvoa1 82 GTTQEIIKGLPQEL-KIVDL-SADFR 105 (183)
T ss_dssp SHHHHHHHTSCSSC-EEEEC-SSTTT
T ss_pred chHHHHHHHHHhcC-ccccc-chhhh
Confidence 99999998766554 33333 54444
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00036 Score=53.91 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=68.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe----------------E---------EcC--ccccc--cH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~----------------e---------i~G--vPVy~--sl 107 (181)
++||.|-|+ ||.|+.+.+.+.+. ++++|+.-|+..... + +.| ++++. ++
T Consensus 1 tikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p 79 (166)
T d1gado1 1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (166)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence 368999999 99999999998885 899998666532110 0 123 56665 57
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++ ++.++|++|+++-...-.+.+..-++.|++.|+. |
T Consensus 80 ~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVii-S 119 (166)
T d1gado1 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM-T 119 (166)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-S
T ss_pred HHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEe-e
Confidence 7764 4568999999999888888888889999999998 5
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0011 Score=52.38 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee-----------ChH-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV-----------PPP- 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV-----------Pp~- 126 (181)
+||+|.|+||-.|+.+++.+.+.|..++...+... ..+.-...++++++..++|.++... +++
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~ 77 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPAD 77 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh-----ccccCHHHHHHHHhhcCCCEEEEcchhccccccchhhHHH
Confidence 58999999999999999999998888764433332 1233445677777777899988764 222
Q ss_pred -------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 127 -------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 127 -------~a~~~~~eaie~GIk~IV~iTt 148 (181)
....+++.|.++|++.+|-+++
T Consensus 78 ~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS 106 (315)
T d1e6ua_ 78 FIYQNMMIESNIIHAAHQNDVNKLLFLGS 106 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1234567777899987765554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.82 E-value=0.0013 Score=50.50 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=45.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC----------------eEE-------cCccccccHHHHhhccC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----------------TEH-------LGLPVFNSVAEAKAETK 115 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G----------------~ei-------~GvPVy~sl~e~~~~~~ 115 (181)
|||.|+|+ |..|...+-.+.+.|++|+ ++|.+..- .+. ..+...++++++++ +
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--~ 76 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--D 76 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--T
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--h
Confidence 58999999 9999988888888899987 55543210 000 12345556788777 7
Q ss_pred CcEEEEeeCh
Q 030220 116 ANASVIYVPP 125 (181)
Q Consensus 116 ~DVaIdfVPp 125 (181)
+|+.+++||-
T Consensus 77 ~d~i~i~VpT 86 (202)
T d1mv8a2 77 SDVSFICVGT 86 (202)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEecCc
Confidence 9999999985
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.81 E-value=0.00051 Score=53.62 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=49.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
.+|.|+|+ |+.|+.+++.+...|++++ +.||........++ -+.+++++.+ ++|++++.+|-..
T Consensus 46 ktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~-~~~~l~~l~~--~~D~v~~~~plt~ 109 (199)
T d1dxya1 46 QTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPMKGDHPDF-DYVSLEDLFK--QSDVIDLHVPGIE 109 (199)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSCCTTC-EECCHHHHHH--HCSEEEECCCCCG
T ss_pred eeeeeeec-ccccccccccccccceeee-ccCCccchhhhcch-hHHHHHHHHH--hcccceeeecccc
Confidence 57999999 9999999999999999987 56775533222222 2458999988 7999999988543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00068 Score=54.82 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=59.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--------------EE--cCccccccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------------EH--LGLPVFNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--------------ei--~GvPVy~sl~e~~~~~~~DVaIdf 122 (181)
|||+|.|++|-.|+.+++.+++.|.+|++..+...... ++ .++.=++.++++++.++||+++-+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 57999999999999999999999999886432221110 00 122223357777777789998865
Q ss_pred e-----C-----hHH--------HHHHHHHHHHcCCCEEEEeC
Q 030220 123 V-----P-----PPF--------AAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 V-----P-----p~~--------a~~~~~eaie~GIk~IV~iT 147 (181)
- + |.. ...+++.|.+.|++.+|.++
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S 123 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS 123 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence 2 1 122 22467777788999877655
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.77 E-value=0.004 Score=44.33 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=61.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--EEcCccccc-------cHHHHhhccCCcEEEEeeChHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--EHLGLPVFN-------SVAEAKAETKANASVIYVPPPFA 128 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--ei~GvPVy~-------sl~e~~~~~~~DVaIdfVPp~~a 128 (181)
++|+|+|+ |++|+.+++.+.+.|.+++. .-||..... +..|++++. .++++- -.++|..+..++.+..
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~-i~~a~~vv~~t~~d~~ 78 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAG-IEDADMYIAVTGKEEV 78 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTT-TTTCSEEEECCSCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcC-hhhhhhhcccCCcHHH
Confidence 58999999 99999999999999998763 234432210 112555532 133331 1278999998887755
Q ss_pred HHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 129 AAA-IMEAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 129 ~~~-~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.-. +..+-+.|++.+++.+.. .+....+.++
T Consensus 79 N~~~~~~~k~~~~~~iI~~~~~--~~~~~~l~~~ 110 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIARISE--IEYKDVFERL 110 (132)
T ss_dssp HHHHHHHHHHTTCCCEEEECSS--TTHHHHHHHT
T ss_pred HHHHHHHHHHcCCceEEEEecC--HHHHHHHHHC
Confidence 433 334446688888875543 3344444443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=96.76 E-value=0.0036 Score=47.60 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=56.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCC-CCCCe-E---------EcCccccc-------cHHHHhhccCCcEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-KKGGT-E---------HLGLPVFN-------SVAEAKAETKANAS 119 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP-~~~G~-e---------i~GvPVy~-------sl~e~~~~~~~DVa 119 (181)
.+||+|.|+||..|+.+++.+.+.|.+|++.+.. ..... + ..++.+.. +..+..+ .+|.+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~v 80 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh--hceee
Confidence 5789999999999999999999999999875432 21100 0 01222211 2334444 67777
Q ss_pred EEeeChHHH---HHHHHHHHHcCCCEEEEeC
Q 030220 120 VIYVPPPFA---AAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 120 IdfVPp~~a---~~~~~eaie~GIk~IV~iT 147 (181)
+........ ....+.+.+++++.++..+
T Consensus 81 i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 111 (307)
T d1qyca_ 81 ISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111 (307)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred eecccccccchhhHHHHHHHHhccccceeee
Confidence 776665443 5566777778887776633
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.75 E-value=0.00035 Score=54.75 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+++.+...|++|+ +.||..... +..++. +.+++++++ ++|++++.+|-.
T Consensus 43 gk~vgIiG~-G~IG~~va~~l~~fg~~V~-~~d~~~~~~~~~~~~~-~~~l~~~l~--~sDii~~~~plt 107 (197)
T d1j4aa1 43 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRNPELEKKGYY-VDSLDDLYK--QADVISLHVPDV 107 (197)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTCB-CSCHHHHHH--HCSEEEECSCCC
T ss_pred CCeEEEecc-cccchhHHHhHhhhccccc-ccCcccccccccceee-ecccccccc--ccccccccCCcc
Confidence 357999999 9999999999998999987 567765331 122332 348999998 799999999853
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=96.75 E-value=0.00018 Score=55.69 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=68.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------EcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------i~G--vPVy~--sl~ 108 (181)
+||.|-|+ ||.|+.+.+.+.+.++++|+..||...-.. +.| ++++. +++
T Consensus 1 ~kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~ 79 (169)
T d1dssg1 1 SKIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE 79 (169)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence 47999999 999999999999989999998777542110 123 45555 466
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+++ .+.++|++|+++-...-.+.+..-++.|++.|+. |.
T Consensus 80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVii-sa 119 (169)
T d1dssg1 80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII-SA 119 (169)
T ss_dssp GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE-SS
T ss_pred HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEee-cC
Confidence 664 3458999999998888888888888889999998 54
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.74 E-value=0.00098 Score=52.48 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=59.1
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-------------EE--cCccccccHHHHhhccCCcEEEEeeC
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-------------EH--LGLPVFNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-------------ei--~GvPVy~sl~e~~~~~~~DVaIdfVP 124 (181)
||+|.|+||-+|+.+++.+++.|.+|++..+....+. ++ .++--..+++++.+.+++|+++-+.-
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999999987422221111 11 12222335777777778999987642
Q ss_pred h----------H--------HHHHHHHHHHHcCCCEEEEeCC
Q 030220 125 P----------P--------FAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 p----------~--------~a~~~~~eaie~GIk~IV~iTt 148 (181)
. . ....+++.|.+.+++..+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS 123 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 123 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 1 1 2234567788888887665553
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=96.72 E-value=0.00074 Score=52.19 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=66.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH----hCCeEeeecCCCCCCe----------------E---------EcC--ccccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE----YGTKMVGGVTPKKGGT----------------E---------HLG--LPVFN- 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~----~g~~IVagVdP~~~G~----------------e---------i~G--vPVy~- 105 (181)
++||.|-|+ ||.|+.+.+.+.+ .++++|+.-||..... + +.| ++++.
T Consensus 1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 368999999 9999999998875 2688998766642110 0 123 56665
Q ss_pred -cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 106 -SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 106 -sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++++ ++.++|++|+++-.-.-.+.+..-+++|++.|++ |
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-S 122 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII-S 122 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE-S
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEE-e
Confidence 567765 4468999999999888888888888999999998 5
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.66 E-value=0.0018 Score=52.27 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe----EEcCccc-----ccc---HHHHhhccCCcEEEEe
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT----EHLGLPV-----FNS---VAEAKAETKANASVIY 122 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~----ei~GvPV-----y~s---l~e~~~~~~~DVaIdf 122 (181)
+++++|+|.|+||.+|+.+++.+++.|.+|++.+- |..... ...|+.+ ++. ++.+.. .+|+..+.
T Consensus 1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~~ 78 (350)
T d1xgka_ 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFIN 78 (350)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEEC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEee
Confidence 35678999999999999999999999999887653 332110 0123322 332 333444 67777765
Q ss_pred eCh------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 123 VPP------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 123 VPp------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.++ .....+++.|.++|++.++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~aa~~agv~~~v~~S 109 (350)
T d1xgka_ 79 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYS 109 (350)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred cccccchhhhhhhHHHHHHHHhCCCceEEEe
Confidence 553 3457788889999987766655
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.65 E-value=0.00054 Score=53.40 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=50.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
.+|.|+|+ |+.|+.+.+.+...|+++. ..||..... ...++.-+.+++|+++ ++|++++.+|-.
T Consensus 50 ktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~l~~ll~--~sD~i~~~~plt 115 (193)
T d1mx3a1 50 ETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLN 115 (193)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred ceEEEecc-ccccccceeeeecccccee-eccCcccccchhhhccccccchhhccc--cCCEEEEeeccc
Confidence 57999999 9999999999999999988 456654331 1235566678999998 799999999854
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.64 E-value=0.002 Score=47.96 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=66.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EE----------cCccccccHHHHhhcc-CCcEEEEeeCh-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH----------LGLPVFNSVAEAKAET-KANASVIYVPP- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei----------~GvPVy~sl~e~~~~~-~~DVaIdfVPp- 125 (181)
+||.|+|. |+||...++.+.+.|+++. +.|+..... ++ .......+.+++.... +++...+.+++
T Consensus 2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T d1pgja2 2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (178)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEEee-hHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCc
Confidence 68999999 9999999999999999976 455432110 00 1223444555555432 45555555555
Q ss_pred HHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHhhhhchhc
Q 030220 126 PFAAAAIMEAMEAELD--LVVCITEGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 126 ~~a~~~~~eaie~GIk--~IV~iTtG~~~ed~~~l~~~ak~ipv~~ 169 (181)
.....++......-.+ .++. ++-...++..++.+..+...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~iii~-~st~~~~~~~~~~~~l~~~~~~~ 124 (178)
T d1pgja2 80 AATDSTIEQLKKVFEKGDILVD-TGNAHFKDQGRRAQQLEAAGLRF 124 (178)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEE-CCCCCHHHHHHHHHHHHTTTCEE
T ss_pred chhhhhhhhhhhhccccceecc-cCccchhHHHHHHHHHhhcceeE
Confidence 4455555655555443 3455 66667777777777766555543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.56 E-value=0.00059 Score=52.67 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV 123 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV 123 (181)
+|||+|.|+||-.|+.+++.+.+.|.+++ ++|.... ++-=+.+++++++.+++|+++-+.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi-~~~r~~~-----D~~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQDL-----DITNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTTC-----CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEE-Eeechhc-----cCCCHHHHHHHHHHcCCCEEEeec
Confidence 47899999999999999999999999988 4565441 122234677888777899988775
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=96.53 E-value=0.00077 Score=52.02 Aligned_cols=86 Identities=19% Similarity=0.053 Sum_probs=56.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEee---------------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYV--------------- 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfV--------------- 123 (181)
|||+|.|+||-+|+.+++.+.+.|-.++........ ..++.=...++++++..+||++|-+.
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~---~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEF---CGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA 77 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSS---CCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccc---cCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCcccc
Confidence 589999999999999999888766544433332211 12333334577778777899998864
Q ss_pred ---ChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 124 ---PPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 124 ---Pp~~a~~~~~eaie~GIk~IV~iT 147 (181)
.......+++.|.+.+++.+..-|
T Consensus 78 ~~~n~~~~~~l~~~~~~~~~~~~~~ss 104 (298)
T d1n2sa_ 78 QLLNATSVEAIAKAANETGAWVVHYST 104 (298)
T ss_dssp HHHHTHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ccccccccccchhhhhccccccccccc
Confidence 122334556666677887766534
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.52 E-value=0.00077 Score=50.79 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=56.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE---cCc--cccccHHHHhhccCCcEEEEeeChH---H
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGL--PVFNSVAEAKAETKANASVIYVPPP---F 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei---~Gv--PVy~sl~e~~~~~~~DVaIdfVPp~---~ 127 (181)
++.+|+|+|+ |.||+.+++.+.+.|.+-+-..|+...- +++ .|. ..|+++.+.+. ++|++|.+++.. .
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~--~~Divi~atss~~~ii 99 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPHPVI 99 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSSCCB
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhc--cCCEEEEecCCCCccc
Confidence 4578999999 9999999999999998755566655311 111 132 34567888877 899999999754 3
Q ss_pred HHHHHHHHHHc
Q 030220 128 AAAAIMEAMEA 138 (181)
Q Consensus 128 a~~~~~eaie~ 138 (181)
-.+.++.+++.
T Consensus 100 ~~~~i~~~~~~ 110 (159)
T d1gpja2 100 HVDDVREALRK 110 (159)
T ss_dssp CHHHHHHHHHH
T ss_pred cHhhhHHHHHh
Confidence 46677777654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0087 Score=45.91 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=58.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEeeecC-CCCCCe-EEcCcc--c--cccHHHHhhc-cCCcEEEEeeCh--
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVT-PKKGGT-EHLGLP--V--FNSVAEAKAE-TKANASVIYVPP-- 125 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVd-P~~~G~-ei~GvP--V--y~sl~e~~~~-~~~DVaIdfVPp-- 125 (181)
++++|+|.|+||-.|+.+++.+++.|. +|.+... |..... ....+. + +.+++++.+. .++|+++.+...
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~ 92 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTR 92 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccccc
Confidence 346799999999999999999999874 6765432 222111 111111 1 2233333322 168998876421
Q ss_pred -------------HHHHHHHHHHHHcCCCEEEEeCCCCC
Q 030220 126 -------------PFAAAAIMEAMEAELDLVVCITEGIP 151 (181)
Q Consensus 126 -------------~~a~~~~~eaie~GIk~IV~iTtG~~ 151 (181)
.....+++.|.+.|++.++-+++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~ 131 (232)
T d2bkaa1 93 GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA 131 (232)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred cccchhhhhhhcccccceeeecccccCccccccCCcccc
Confidence 14467888999999998766564433
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0017 Score=49.76 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=49.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+.+.+...|+++. ..||.... ......-+.+++|+++ +.|++++..|-.
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~-~~~~~~~~~~l~ell~--~sDii~i~~plt 107 (188)
T d1sc6a1 44 GKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENKL-PLGNATQVQHLSDLLN--MSDVVSLHVPEN 107 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCC-CCTTCEECSCHHHHHH--HCSEEEECCCSS
T ss_pred ceEEEEeec-ccchhhhhhhcccccceEe-eccccccc-hhhhhhhhhhHHHHHh--hccceeecccCC
Confidence 467999999 9999999999998999987 44554322 2233444568999998 789999998844
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=96.35 E-value=0.00068 Score=52.33 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCeE--------------------------EcC--ccccc--cH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLG--LPVFN--SV 107 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~e--------------------------i~G--vPVy~--sl 107 (181)
.||.|-|+ ||.|+.+.+.+.+. ++++|+..||...-.. +.| ++++. ++
T Consensus 2 ikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p 80 (169)
T d1u8fo1 2 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 80 (169)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred cEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence 58999999 99999999988875 8999987776432110 122 55555 46
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++ ++.++|++++++-...-.+.+..-+++|++.|+. +.
T Consensus 81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVii-Sa 121 (169)
T d1u8fo1 81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SA 121 (169)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SS
T ss_pred hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEee-cc
Confidence 6664 3457999999999888888888888999999998 53
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=96.32 E-value=0.0012 Score=50.93 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=67.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-CCeEeeecCCCCCCe-------------------------EEcC--ccccc--cHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-------------------------EHLG--LPVFN--SVA 108 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-g~~IVagVdP~~~G~-------------------------ei~G--vPVy~--sl~ 108 (181)
.||.|-|+ ||.|+.+.+.+.+. ++++|+.-||..... .+.| ++++. +++
T Consensus 2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~ 80 (171)
T d3cmco1 2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (171)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH
Confidence 58999999 99999999988885 899998766542110 0123 55665 577
Q ss_pred HHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 109 EAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 109 e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+++ ++.++|++|+++-.....+-+..-+++|++.|+. |.
T Consensus 81 ~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVii-Sa 120 (171)
T d3cmco1 81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII-SA 120 (171)
T ss_dssp GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred HccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEE-ec
Confidence 765 4468999999999888888888889999999997 53
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0013 Score=44.75 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
.+||+|+|+ |+.|+..++.+.+.|.++.+
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~ 33 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVTPRV 33 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEEE
Confidence 467999999 99999999999999988663
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.20 E-value=0.0017 Score=50.02 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=64.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCe--------------------------EEcC--ccccc--
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGT--------------------------EHLG--LPVFN-- 105 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~--------------------------ei~G--vPVy~-- 105 (181)
+||.|-|+ ||.|+.+.+.+.+. +++||+.-||..... .++| ++++.
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~ 79 (172)
T d1rm4a1 1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 79 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence 48999999 99999999988763 488998666642110 0234 45555
Q ss_pred cHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 106 SVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 106 sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++++++ ++.++|++|+++-.-.-.+-+..-+++|++.|++ |.
T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVii-SA 122 (172)
T d1rm4a1 80 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI-TA 122 (172)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEE-SS
T ss_pred ChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEe-ec
Confidence 466664 3458999999998877778888888999999988 54
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.13 E-value=0.0027 Score=49.56 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHh-----CCeEeeecCCCCCCeE----------------------------------Ec
Q 030220 59 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGGTE----------------------------------HL 99 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~-----g~~IVagVdP~~~G~e----------------------------------i~ 99 (181)
+||.|-|+ ||.|+.+.+.+.+. .+++|+..||...-.. +.
T Consensus 3 ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~ 81 (190)
T d1k3ta1 3 IKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVN 81 (190)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEET
T ss_pred eEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEEc
Confidence 68999999 99999999987763 4678987777532100 11
Q ss_pred Cccc-----cccHHHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 100 GLPV-----FNSVAEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 100 GvPV-----y~sl~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTt 148 (181)
|-++ ..++++++ ++.++|++++++-.-...+.+..-+++|++.|++ |.
T Consensus 82 g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA 135 (190)
T d1k3ta1 82 GHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI-SA 135 (190)
T ss_dssp TEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred CceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee-cc
Confidence 2222 12355654 3448999999999888888888899999999998 54
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.12 E-value=0.009 Score=42.06 Aligned_cols=97 Identities=7% Similarity=0.069 Sum_probs=56.8
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccc-cc------cHHHH-hhccCCcEEEEeeChHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPV-FN------SVAEA-KAETKANASVIYVPPPFAA 129 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPV-y~------sl~e~-~~~~~~DVaIdfVPp~~a~ 129 (181)
+++|+|+ |++|+.+++.+.+.|.+++. ..||....+ .-.|.++ |. .++++ ++ ++|++|..++.....
T Consensus 2 ~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~--~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 2 QFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIR--NFEYVIVAIGANIQA 78 (134)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG--GCSEEEECCCSCHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCc--cccEEEEEcCchHHh
Confidence 5899999 99999999999999999663 233322110 0012222 21 25554 33 789999988865443
Q ss_pred HH-HH-HHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 030220 130 AA-IM-EAMEAELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 130 ~~-~~-eaie~GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
.. +. .+-..+.+.|+.-+.. .++...|.++
T Consensus 79 ~~~~~~~~~~~~~~~iiar~~~--~~~~~~l~~~ 110 (134)
T d2hmva1 79 STLTTLLLKELDIPNIWVKAQN--YYHHKVLEKI 110 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECCS--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEeeccc--HhHHHHHHHC
Confidence 33 33 3334577777764443 3444444444
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0028 Score=48.82 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=65.0
Q ss_pred eEEEEccCCCCcchhhHHHHHh---CCeEeeecCCCCCCe----------------E---------EcC--ccccc--cH
Q 030220 60 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGT----------------E---------HLG--LPVFN--SV 107 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~---g~~IVagVdP~~~G~----------------e---------i~G--vPVy~--sl 107 (181)
||.|-|+ ||.|+.+.+.+.+. ++++|+.-|+..... + +.| ++++. ++
T Consensus 2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 7999999 99999999988763 689998655532110 0 123 55665 57
Q ss_pred HHHh-hccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeC
Q 030220 108 AEAK-AETKANASVIYVPPPFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 108 ~e~~-~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iT 147 (181)
++++ ++.++|++|+++-.-.-.+.++.-+++|++.|+. |
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVii-S 120 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII-T 120 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-S
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEEE-e
Confidence 7764 3458999999999888888888889999999988 5
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.021 Score=48.34 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=71.6
Q ss_pred eccCCceEEEEccCCCCcchhhH---HHHHh-CCeEeeecCCCCCCeE----E----cCccccccHHHHhhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTE---QAIEY-GTKMVGGVTPKKGGTE----H----LGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k---~~~~~-g~~IVagVdP~~~G~e----i----~GvPVy~sl~e~~~~~~~DVaId 121 (181)
++++.++.+|. +-|.++....| .++.| .-.+|+.|+....|+. + .++|||.|++++.+ .++|+.|+
T Consensus 6 m~~p~~~a~Il-~~g~~~~~~gKTa~gLlRy~~~~~v~~V~~~~aG~~~~~~l~g~~~~IPIv~s~~~A~~-~g~~~lii 83 (338)
T d2g0ta1 6 LYQPGTPAAIV-AWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKE-MGAEVLII 83 (338)
T ss_dssp HSCTTEEEEEE-CTTTTTSGGGHHHHHHHHHCSSEEEEEEESSCTTCBGGGTCC-CCSCCBEESSHHHHHH-TTCCEEEE
T ss_pred hcCCCCCEEEE-eCCCcCCCCchHhhhHHhccCCCeEEEEECCCCCCchhhhcCCCCCCCCEeCCHHHHHh-cCCCEEEE
Confidence 57788887777 33667765555 45565 3234445554444532 2 37999999999986 47999999
Q ss_pred eeCh------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 122 YVPP------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 122 fVPp------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
-+-| +.-.+.+.+|+++|...|-+.=+ ...|-.++.++|++
T Consensus 84 GvAp~GG~lp~~w~~~i~~Al~~Gl~IvsGLH~--~L~ddpel~~~A~~ 130 (338)
T d2g0ta1 84 GVSNPGGYLEEQIATLVKKALSLGMDVISGLHF--KISQQTEFLKIAHE 130 (338)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC----CCHHHHHHHHHH
T ss_pred EecccCCcCCHHHHHHHHHHHHcCCeEEecchh--hhccCHHHHHHHHh
Confidence 8764 56678999999999988776444 44455556666543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=96.02 E-value=0.0073 Score=48.04 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-e------------E--EcCccccccHHHHhhccCCcEEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T------------E--HLGLPVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~------------e--i~GvPVy~sl~e~~~~~~~DVaId 121 (181)
+++||+|.|+||-.|+.+++.+++.|.+|.+ ++..... . + ..++.=+..+.++.+..++|+++.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~-~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~ 85 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKG-YSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 85 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence 4689999999999999999999999999774 4322211 0 0 112222334677777778899888
Q ss_pred eeCh
Q 030220 122 YVPP 125 (181)
Q Consensus 122 fVPp 125 (181)
+...
T Consensus 86 ~aa~ 89 (356)
T d1rkxa_ 86 MAAQ 89 (356)
T ss_dssp CCSC
T ss_pred hhcc
Confidence 7753
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.97 E-value=0.0027 Score=48.55 Aligned_cols=66 Identities=9% Similarity=0.045 Sum_probs=51.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
..+|.|+|+ |+.|+.+.+.+..+|+++. ..||...... ..++..+.+++|+.+ ++|++++.+|-..
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~~l~--~sD~v~~~~plt~ 112 (188)
T d2naca1 44 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLHP 112 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCCT
T ss_pred ccceeeccc-cccchhhhhhhhccCceEE-EEeeccccccccccccccccCCHHHHHH--hccchhhcccccc
Confidence 467999999 9999999999999999977 5565432211 135666778999988 7999999988543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.91 E-value=0.021 Score=42.54 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=56.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCCeEEcCcc-ccccHHHHhhcc--CCcEEEEeeCh--------
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLP-VFNSVAEAKAET--KANASVIYVPP-------- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G~ei~GvP-Vy~sl~e~~~~~--~~DVaIdfVPp-------- 125 (181)
+||+|.|+||-.|+.+++.+.+.|. +|++.. ++... +...+. .+.++.+..+.. .+|+++.++-.
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~-r~~~~-~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 80 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA-RKALA-EHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSE 80 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB-SSCCC-CCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEe-CCchh-hcccccccccchhhhhhccccchheeeeeeeeeccccccc
Confidence 6899999999999999999988754 555433 22211 111111 223455544432 57988886421
Q ss_pred --------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 --------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 --------~~a~~~~~eaie~GIk~IV~iT 147 (181)
......++.|.+.+++.++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~a~~~~v~~~i~~S 110 (212)
T d2a35a1 81 EAFRAVDFDLPLAVGKRALEMGARHYLVVS 110 (212)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cccccchhhhhhhccccccccccccccccc
Confidence 2345678888899999877655
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.85 E-value=0.0081 Score=48.99 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=26.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+||+|.|+||-.|+.+++.+++.|.+|++
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~ 30 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCI 30 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence 68999999999999999999999999874
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0027 Score=47.92 Aligned_cols=107 Identities=11% Similarity=0.053 Sum_probs=65.6
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHh--CC--eEeeecCCCCC-----CeEE------------cCccccc--cHHHHhh
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEY--GT--KMVGGVTPKKG-----GTEH------------LGLPVFN--SVAEAKA 112 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~--g~--~IVagVdP~~~-----G~ei------------~GvPVy~--sl~e~~~ 112 (181)
+++.+|+++|+ |..|+..++.+.+. ++ ++++..|..+. |-.+ ...+-++ ++.+.+.
T Consensus 2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T d1ebfa1 2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (168)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence 45679999999 99999999988873 43 46654442210 0000 1111111 1223222
Q ss_pred -ccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHHhh
Q 030220 113 -ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIP--QHDMVINFTRVN 163 (181)
Q Consensus 113 -~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~--~ed~~~l~~~ak 163 (181)
...+|+.++++..+.+.+...+++++|++.|-+==..+. -++..+|.++++
T Consensus 81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~ 134 (168)
T d1ebfa1 81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKP 134 (168)
T ss_dssp TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCT
T ss_pred cCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHH
Confidence 236789999999999999999999999987754112222 244556655454
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.74 E-value=0.0031 Score=48.73 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=50.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---EcCccccccHHHHhhccCCcEEEEeeChH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
..+|.|+|+ |+.|+.+++.+...|+++. ..||...... ..+..-+.+++++++ ++|++++.+|-.
T Consensus 47 g~tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~ll~--~sD~v~l~~plt 114 (191)
T d1gdha1 47 NKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPST 114 (191)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred ccceEEeec-ccchHHHHHHHHhhccccc-cccccccccchhhcccccccCCHHHHHh--hCCeEEecCCCC
Confidence 467999999 9999999999998999987 4666543211 123444568999998 789999999864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.73 E-value=0.012 Score=42.94 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=55.7
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cC-------ccccccHHHH---hh---ccCCc
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LG-------LPVFNSVAEA---KA---ETKAN 117 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~G-------vPVy~sl~e~---~~---~~~~D 117 (181)
.+++..+|+|+|+ |.+|...++..+..|.++++ +++.....+. .| -+...+..+. +. ...+|
T Consensus 23 ~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~-v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 23 GVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVC-TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCEEEEEcc-cccchhhHhhHhhhcccccc-cchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 3566778999997 99999999988888999774 5544211111 11 1111222222 21 13699
Q ss_pred EEEEeeChHHHHHHHHHHHHcCCCE
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAELDL 142 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GIk~ 142 (181)
++++++....+.+.+.+++..|=+.
T Consensus 101 ~vid~~g~~~~~~~a~~~~~~~G~i 125 (170)
T d1e3ja2 101 VTIDCSGNEKCITIGINITRTGGTL 125 (170)
T ss_dssp EEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred eeeecCCChHHHHHHHHHHhcCCce
Confidence 9999999888777777776665333
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.68 E-value=0.002 Score=49.44 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=63.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--EcCccccccHHHHhhccCCcEEEEeeChHHHH-HHHH-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNSVAEAKAETKANASVIYVPPPFAA-AAIM- 133 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--i~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~-~~~~- 133 (181)
..++.|+|+ |+.|+.+.+.+...|++|+ +.||...... ..++. +.+++|+++ ++|++++.+|-...- ..+.
T Consensus 44 ~k~vgiiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~sDiv~~~~Plt~~T~~lin~ 118 (184)
T d1ygya1 44 GKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIE-LLSLDDLLA--RADFISVHLPKTPETAGLIDK 118 (184)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCE-ECCHHHHHH--HCSEEEECCCCSTTTTTCBCH
T ss_pred ceeeeeccc-cchhHHHHHHhhhccceEE-eecCCCChhHHhhcCce-eccHHHHHh--hCCEEEEcCCCCchhhhhhhH
Confidence 467999999 9999999999988999987 5777653211 12333 458999998 799999999854322 2222
Q ss_pred HHHHc-CCC-EEEEeCCCCCHHHHHHHHHHhhh
Q 030220 134 EAMEA-ELD-LVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 134 eaie~-GIk-~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
+.++. +-. .+|+++=|=-+ |...|.++.+.
T Consensus 119 ~~l~~mk~~a~lIN~sRG~iV-de~aL~~aL~~ 150 (184)
T d1ygya1 119 EALAKTKPGVIIVNAARGGLV-DEAALADAITG 150 (184)
T ss_dssp HHHTTSCTTEEEEECSCTTSB-CHHHHHHHHHT
T ss_pred HHHhhhCCCceEEEecchhhh-hhHHHHHHHhc
Confidence 22222 333 36665544333 33444444433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.011 Score=43.51 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=58.6
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeEE---cCc---ccc--ccHHHHhh------ccCCcE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEH---LGL---PVF--NSVAEAKA------ETKANA 118 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei---~Gv---PVy--~sl~e~~~------~~~~DV 118 (181)
.+++..+|+|+|+ |-+|...+..+...|.+ |+ .+|+.....+. .|. -.+ .+..+..+ ...+|+
T Consensus 23 ~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi-~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 23 GVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVV-VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE-EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCEEEEECC-CccHHHHHHHHHHcCCceEE-eccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 3566778999998 99999999988888985 54 44443211111 121 111 13333322 236899
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEE
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV 144 (181)
+++++..+.+.+.+..++..|=+.++
T Consensus 101 vid~~G~~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 101 TIECTGAEASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp EEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred EEeccCCchhHHHHHHHhcCCCEEEE
Confidence 99999999988888888877755544
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.35 E-value=0.03 Score=44.86 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=58.4
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCC------------Ce-E--E-cCccccccHHHHhhccCCc
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG------------GT-E--H-LGLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~------------G~-e--i-~GvPVy~sl~e~~~~~~~D 117 (181)
+.+.++|+|.|++|-.|+.+++.+++.|.+|++.+. +.+. +. + + .++.-..++++++. ++|
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~ 85 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAA 85 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCS
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cch
Confidence 445688999999999999999999999999987653 1110 00 0 1 12222224555555 677
Q ss_pred EEEEeeCh---------------HHHHHHHHHHHHc-CCCEEEEeCC
Q 030220 118 ASVIYVPP---------------PFAAAAIMEAMEA-ELDLVVCITE 148 (181)
Q Consensus 118 VaIdfVPp---------------~~a~~~~~eaie~-GIk~IV~iTt 148 (181)
.++-+.-+ .....+++.|.+. +++.++.+++
T Consensus 86 ~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS 132 (342)
T d1y1pa1 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred hhhhhcccccccccccccccchhhhHHHHHHhhhccccccccccccc
Confidence 76644333 1234556667775 7998887665
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.33 E-value=0.0077 Score=49.25 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=45.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---E------cCccc-------cccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---H------LGLPV-------FNSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---i------~GvPV-------y~sl~e~~~~~~~DVaIdf 122 (181)
|||+|.|++|-.|+.+++.+++.|.++|.++|....... + .++.. +..++++++..+||+++-+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 589999999999999999999999998888774321110 1 12222 1246666666689999877
Q ss_pred e
Q 030220 123 V 123 (181)
Q Consensus 123 V 123 (181)
.
T Consensus 81 A 81 (361)
T d1kewa_ 81 A 81 (361)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.30 E-value=0.011 Score=40.90 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=49.8
Q ss_pred eeccCCceEEEEccCCCCcc-hhhHHHHHhCCeEeeecCCCCCC--e--EEcCcccccc-HHHHhhccCCcEEEEeeChH
Q 030220 53 VFVDKNTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGG--T--EHLGLPVFNS-VAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~-~~~k~~~~~g~~IVagVdP~~~G--~--ei~GvPVy~s-l~e~~~~~~~DVaIdfVPp~ 126 (181)
..++..+||-++|+ |..|- ..++.+.+.|++|- |.|..... + .-.|++||.. -++-++ ++|++|....-.
T Consensus 3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~Vs-GSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~--~~d~vV~S~AI~ 78 (96)
T d1p3da1 3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIADGVVTQRLAQAGAKIYIGHAEEHIE--GASVVVVSSAIK 78 (96)
T ss_dssp CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESCCSHHHHHHHHTTCEEEESCCGGGGT--TCSEEEECTTSC
T ss_pred ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEeCCCChhhhHHHHCCCeEEECCccccCC--CCCEEEECCCcC
Confidence 35677889999999 87886 66888888999877 55644321 0 1147777662 222233 456543332111
Q ss_pred HHHHHHHHHHHcCCCEE
Q 030220 127 FAAAAIMEAMEAELDLV 143 (181)
Q Consensus 127 ~a~~~~~eaie~GIk~I 143 (181)
.--.-+.+|.+.|++.+
T Consensus 79 ~~npel~~A~~~gipii 95 (96)
T d1p3da1 79 DDNPELVTSKQKRIPVI 95 (96)
T ss_dssp TTCHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHcCCCEE
Confidence 11222555666666653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.013 Score=46.54 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=56.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhC-CeEeeecCCCCCC----------eEE-cCccccccHHHHhhccCCcEEEEeeCh-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG----------TEH-LGLPVFNSVAEAKAETKANASVIYVPP- 125 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g-~~IVagVdP~~~G----------~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp- 125 (181)
+||+|.|+||-+|+.+++.+++.| .+|++ +|..... +-+ .++.-+.++.+...+ ++|+++-+.-.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~-ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~-~~d~Vih~a~~~ 78 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYG-LDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK-KCDVVLPLVAIA 78 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEE-EESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH-HCSEEEECBCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEE-EeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh-CCCccccccccc
Confidence 589999999999999999998876 67775 3332211 011 234444455553322 79998875532
Q ss_pred -----------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 126 -----------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 126 -----------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
.....+++.|.+.+++.++..|
T Consensus 79 ~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss 117 (342)
T d2blla1 79 TPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117 (342)
T ss_dssp CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECC
T ss_pred cccccccCCcccccccccccccccccccccccccccccc
Confidence 1245577888888999887644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.13 E-value=0.024 Score=44.61 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=58.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+.. + .-...+++.++...+ +..|.+.++.+.+++++
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~-i~~r~~~--~-----~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVV-VASRNLE--E-----ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCHH--H-----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHH--H-----HHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHH
Confidence 35678889999999999999999999966 3343221 1 111233443333333 34577889999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. +|..+|+ ..|+
T Consensus 77 ~~~~~g~iDiLVn-nAG~ 93 (251)
T d1vl8a_ 77 VKEKFGKLDTVVN-AAGI 93 (251)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCCCEEEE-CCCC
Confidence 9886 7888888 5554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.08 E-value=0.019 Score=41.84 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=63.0
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cc--c----ccHHHHhhc---cCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PV--F----NSVAEAKAE---TKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PV--y----~sl~e~~~~---~~~DVaI 120 (181)
.+++..+|+|+|+ |-.|...++.....|.+.|..+++.....+. .|. .+ | +.+++..+. ..+|+++
T Consensus 25 ~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 25 KLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 4677888999999 6689999999999998766666654322111 121 11 1 234444332 3689999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++....+.+.+..++..|-..++.
T Consensus 104 d~~G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 104 ECIGNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp ECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred ecCCCHHHHHHHHHhhcCCceeEEE
Confidence 9999999999999998888666544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.012 Score=43.23 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=53.1
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cC---ccccc--cH-HHHhh---ccCCcEEEEe
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LG---LPVFN--SV-AEAKA---ETKANASVIY 122 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~G---vPVy~--sl-~e~~~---~~~~DVaIdf 122 (181)
.+++..+|+|.|++|..|+..++.....|.++++.+.....-... .| +--|+ ++ +++.+ ..++|+++|+
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 466778899999999999999999988999988765532100000 11 11122 23 22222 2468999999
Q ss_pred eChHHHHHHHHHHHHcC
Q 030220 123 VPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 123 VPp~~a~~~~~eaie~G 139 (181)
+..+...+ +..++..+
T Consensus 102 ~g~~~~~~-~~~~l~~~ 117 (183)
T d1pqwa_ 102 LAGEAIQR-GVQILAPG 117 (183)
T ss_dssp CCTHHHHH-HHHTEEEE
T ss_pred ccchHHHH-HHHHhcCC
Confidence 98765444 34455444
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.98 E-value=0.033 Score=40.28 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCe--Eeeec-CCCCC-----CeEE--cCccccccHHHHhhccCCcEEEEeeCh--
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGGV-TPKKG-----GTEH--LGLPVFNSVAEAKAETKANASVIYVPP-- 125 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~--IVagV-dP~~~-----G~ei--~GvPVy~sl~e~~~~~~~DVaIdfVPp-- 125 (181)
+.+|+|.|+||.+|+.+++.+++.|.+ +++.. +|.+. +-++ .++--..++.++++ ++|.++.+...
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a~~~~ 80 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAVP 80 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccc--cceeeEEEEeecc
Confidence 578999999999999999999997754 44322 12110 0011 12222224566666 78988877532
Q ss_pred -----------------------------HHHHHHHHHHHHcCCCEEEEe
Q 030220 126 -----------------------------PFAAAAIMEAMEAELDLVVCI 146 (181)
Q Consensus 126 -----------------------------~~a~~~~~eaie~GIk~IV~i 146 (181)
..+...+..+...+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T d2q46a1 81 KMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVV 130 (252)
T ss_dssp EECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEE
T ss_pred ccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccc
Confidence 356667777777777776543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.017 Score=46.77 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=43.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC------CCC---e---------EE--cCccccccHHHHhhccCCcE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK------KGG---T---------EH--LGLPVFNSVAEAKAETKANA 118 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~------~~G---~---------ei--~GvPVy~sl~e~~~~~~~DV 118 (181)
++|+|.|+||-.|+.+++.+++.|.+|++..... +.. . ++ .++-=+.+++++++..++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 3466889999999999999999999998654321 000 0 00 12222335777777778999
Q ss_pred EEEee
Q 030220 119 SVIYV 123 (181)
Q Consensus 119 aIdfV 123 (181)
++.+.
T Consensus 82 v~h~a 86 (357)
T d1db3a_ 82 VYNLG 86 (357)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99884
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.025 Score=45.20 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=55.4
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE---------EcCccccc-------cHHHHhhccCCcEEEEeeC
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------HLGLPVFN-------SVAEAKAETKANASVIYVP 124 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e---------i~GvPVy~-------sl~e~~~~~~~DVaIdfVP 124 (181)
|+|.|+||-.|+.+++.+++.|.+|++..+....... -.+++++. +++++.+..+||+++-+.-
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa 83 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAG 83 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCS
T ss_pred EEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEccc
Confidence 6788999999999999999999998864221111000 01232222 3566666668999886531
Q ss_pred ----h------HH--------HHHHHHHHHHcCCCEEEEeCC
Q 030220 125 ----P------PF--------AAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 125 ----p------~~--------a~~~~~eaie~GIk~IV~iTt 148 (181)
+ .. ...+++.|.+.+++.++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS 125 (347)
T d1z45a2 84 LKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 125 (347)
T ss_dssp CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence 1 11 234466677889988766554
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=94.77 E-value=0.018 Score=46.51 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=57.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCcccc--------------cc--------------H
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPVF--------------NS--------------V 107 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~GvPVy--------------~s--------------l 107 (181)
..+|+|+|+ |+.|+...+.+.+.|.+||+.-|.. |.-+ .|+.+- .+ -
T Consensus 36 g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~~--G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T d1bgva1 36 GKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPD--GYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG 112 (255)
T ss_dssp TCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETT--EEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEET
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCC--ceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeech
Confidence 468999999 9999999999999999999854432 1000 122211 11 1
Q ss_pred HHHhhccCCcEEEEeeChH-HHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 108 AEAKAETKANASVIYVPPP-FAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 108 ~e~~~~~~~DVaIdfVPp~-~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
+++. ..+|||.+-+--.. .-.++++.....|+|.|+- ..+-|..+
T Consensus 113 ~~~~-~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~E-gAN~p~t~ 158 (255)
T d1bgva1 113 EKPW-GQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIE-VANMPTTN 158 (255)
T ss_dssp CCGG-GSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEEC-CSSSCBCH
T ss_pred hhcc-cccccEEeeccccccccHHHHHhhhhcCceEEec-CCCCCcch
Confidence 2222 23688865332221 1356777777889999998 65555443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.76 E-value=0.03 Score=43.92 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=56.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . -...+++.++...+ +..|.+.++.+.+.+++
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~~~~--~-----~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIYRSAAD--A-----VEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEESSCTT--H-----HHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHHH--H-----HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 35677779999999999999999999966 33433311 1 11223333322223 45577899999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 81 ~~~~~g~iDilVn-nAg 96 (260)
T d1h5qa_ 81 IDADLGPISGLIA-NAG 96 (260)
T ss_dssp HHHHSCSEEEEEE-CCC
T ss_pred HHHHhCCCcEecc-ccc
Confidence 9976 5776777 545
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.75 E-value=0.027 Score=44.10 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|+++-+|+.+++.+.+.|.+|+. .+.+. +.+++..++.++ -+..|...++.+.+.++++.
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~-~~r~~-----------~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVA-CDIEE-----------GPLREAAEAVGAHPVVMDVADPASVERGFAEAL 72 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCH-----------HHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCH-----------HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 466888899999999999999999999763 44332 122333332222 25567889999999999998
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 73 ~~~g~iDilVn-nAG 86 (242)
T d1ulsa_ 73 AHLGRLDGVVH-YAG 86 (242)
T ss_dssp HHHSSCCEEEE-CCC
T ss_pred HhcCCceEEEE-CCc
Confidence 86 6888887 444
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0073 Score=46.26 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=60.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE--------------------------------EcCcccccc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------------HLGLPVFNS 106 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e--------------------------------i~GvPVy~s 106 (181)
.||+|+|+ |.||+-++..+...|++++ .+|+....-+ ...+....+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 57999999 9999999999999999966 3443321000 012345557
Q ss_pred HHHHhhccCCcEEEEeeChHHHH-HHHHHHHHcCCCE--EE-EeCCCCCHHHHHH
Q 030220 107 VAEAKAETKANASVIYVPPPFAA-AAIMEAMEAELDL--VV-CITEGIPQHDMVI 157 (181)
Q Consensus 107 l~e~~~~~~~DVaIdfVPp~~a~-~~~~eaie~GIk~--IV-~iTtG~~~ed~~~ 157 (181)
+.++.. ++|.++-.+|.+.-. .-+..-++.-++. |+ --|.+++..++..
T Consensus 83 ~~~a~~--~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~ 135 (192)
T d1f0ya2 83 AASVVH--STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN 135 (192)
T ss_dssp HHHHTT--SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT
T ss_pred hHhhhc--ccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh
Confidence 777776 899999999986543 2333333332222 22 2267888777654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.022 Score=41.85 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=54.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc----cHHHH----hhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN----SVAEA----KAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~----sl~e~----~~~~~~DVaId 121 (181)
.+++..+|+|.|++|-.|...++.....|+++++.++... ..+. .|. .+++ ++.+. .....+|++++
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-GQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-HHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEEeccccccccccccccccCccccccccccc-ccccccccCcccccccccccHHHHhhhhhccCCceEEee
Confidence 4567788999999999999999999889999887765321 1111 121 3332 23232 22336899999
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030220 122 YVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~G 139 (181)
++..+. .+.+..+++.+
T Consensus 104 ~~g~~~-~~~~~~~l~~~ 120 (174)
T d1yb5a2 104 MLANVN-LSKDLSLLSHG 120 (174)
T ss_dssp SCHHHH-HHHHHHHEEEE
T ss_pred cccHHH-HHHHHhccCCC
Confidence 997654 44444555554
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.062 Score=42.21 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CCcE---EEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KANA---SVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~DV---aIdfVPp~~a~~~~~e 134 (181)
+.++|.|+++..|+.+++.+.+.|.+|+. .+.+.. . +-...+++.+.. +.++ ..|.+.++.+.+++++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~-~~r~~~--~-----l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVG-CARTVG--N-----IEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCHH--H-----HHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHH--H-----HHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHH
Confidence 45888899999999999999999999774 343221 0 111223332221 2232 3467899999999999
Q ss_pred HHHc--CCCEEEEeCC--------CCCHHHHHHHHHHhhhhchhchh
Q 030220 135 AMEA--ELDLVVCITE--------GIPQHDMVINFTRVNILLVAFLN 171 (181)
Q Consensus 135 aie~--GIk~IV~iTt--------G~~~ed~~~l~~~ak~ipv~~~~ 171 (181)
+.+. ++..+|+-+. .++.++..+..+.--.-|+-...
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~ 129 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTR 129 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHH
Confidence 9987 7888888442 24567777666665554444333
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.51 E-value=0.093 Score=42.37 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=64.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCcc-ccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLP-VFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvP-Vy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
+.++|-|+++-+|+.+++.+.+.|.+|+. ..++...+. ..... .-...+++. .....+..+....+...+.+++++
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~~ 85 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGV-GKGSSAADKVVEEIR-RRGGKAVANYDSVEAGEKLVKTAL 85 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSC-BCCSHHHHHHHHHHH-HTTCEEEEECCCGGGHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhh-hhhHHHHHHHHHHHh-hcccccccccchHHHHHHHHHHHH
Confidence 45777799999999999999999999663 343332210 01111 111123322 224577788888899999999999
Q ss_pred Hc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 137 EA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 137 e~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+. ++..+|+ -.|+ +.+|..++.+.
T Consensus 86 ~~~G~iDiLVn-NAGi~~~~~~~~~~~e~~~~~~~v 120 (302)
T d1gz6a_ 86 DTFGRIDVVVN-NAGILRDRSFSRISDEDWDIIQRV 120 (302)
T ss_dssp HHTSCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEE-CCccCCCCChhhCCHHHHhhhhce
Confidence 87 6888887 5443 55555555443
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.50 E-value=0.033 Score=43.50 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=27.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+||+|.|+||-.|+.+++.+++.|++|.+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~ 30 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGL 30 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence 479999999999999999999999998854
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.43 E-value=0.0023 Score=48.14 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=54.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc--cc-cc--cH----HHHhhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL--PV-FN--SV----AEAKAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv--PV-y~--sl----~e~~~~~~~DVaId 121 (181)
.+++..+|+|+|+ |-.|...++..+..|.+.|..+|+.....+. .|. .+ |. +. .+......+|++++
T Consensus 24 ~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 24 DIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEE
Confidence 4567888999998 9999999999998898644466654321111 231 11 22 22 22222235999999
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030220 122 YVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~G 139 (181)
++....+.+.+.+++..+
T Consensus 103 ~~g~~~~~~~a~~~~~~~ 120 (174)
T d1jqba2 103 AGGGSETLSQAVKMVKPG 120 (174)
T ss_dssp CSSCTTHHHHHHHHEEEE
T ss_pred ccCCHHHHHHHHHHHhcC
Confidence 998777766666666554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.31 E-value=0.06 Score=39.45 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=58.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCCeE---E------cCcccc---ccHHHHhhccCCcEEEEeeC-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---H------LGLPVF---NSVAEAKAETKANASVIYVP- 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G~e---i------~GvPVy---~sl~e~~~~~~~DVaIdfVP- 124 (181)
.||.|+||+|+.|+...-.+...+. .-+..+|.++...+ + ...+.+ .+..|..+ ++|++|++.-
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~--~aDivVitag~ 78 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK--GCDVVVIPAGV 78 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT--TCSEEEECCSC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhC--CCCEEEECCCc
Confidence 3799999999999988777766554 32334453321111 1 112222 24455555 7999998743
Q ss_pred ---------------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 030220 125 ---------------PPFAAAAIMEAMEAELDLVVCITEGIPQHD 154 (181)
Q Consensus 125 ---------------p~~a~~~~~eaie~GIk~IV~iTtG~~~ed 154 (181)
.+.+.+.++.+.+++.+.++.+.+. |+.-
T Consensus 79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN-PvD~ 122 (144)
T d1mlda1 79 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN-PVNS 122 (144)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS-CHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-chhh
Confidence 3567788889999999988775554 4443
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.042 Score=43.33 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=26.8
Q ss_pred ceE-EEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 59 TRV-ICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 59 ~rV-iVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+|| +|.|++|-.|+.+++.+++.|++|++.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i 31 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGI 31 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEE
Confidence 378 788999999999999999999999864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.13 E-value=0.061 Score=41.88 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=57.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
.++++|.|+++-+|+.+++.+.+.|.+|+. +.+..... ++ ..+-+|.+.++.+.++++++.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~-----------------~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-GL-----------------FGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-TS-----------------EEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc-Cc-----------------eEEEEecCCHHHHHHHHHHHH
Confidence 356888899999999999999999999774 23322211 11 124456677888888888888
Q ss_pred Hc--CCCEEEEeC--------CCCCHHHHHHHHHH
Q 030220 137 EA--ELDLVVCIT--------EGIPQHDMVINFTR 161 (181)
Q Consensus 137 e~--GIk~IV~iT--------tG~~~ed~~~l~~~ 161 (181)
+. ++..+|+-+ ..++++|..++.+.
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~v 103 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINA 103 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHH
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHHh
Confidence 76 688887733 23355555555544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.11 E-value=0.1 Score=40.48 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=64.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++.+|+.+++.+.+.|.+|+. .+.+. + .+++..++.+.+ +..|...++.+++.+++
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~-~~r~~--~---------~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~ 72 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVA-VDREE--R---------LLAEAVAALEAEAIAVVADVSDPKAVEAVFAE 72 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCH--H---------HHHHHHHTCCSSEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCH--H---------HHHHHHHHcCCceEEEEecCCCHHHHHHHHHH
Confidence 356788899999999999999999999773 33322 1 123333333322 45678889999999999
Q ss_pred HHHc--CCCEEEEeC--------CCCCHHHHHHHHHHhhhhchhc
Q 030220 135 AMEA--ELDLVVCIT--------EGIPQHDMVINFTRVNILLVAF 169 (181)
Q Consensus 135 aie~--GIk~IV~iT--------tG~~~ed~~~l~~~ak~ipv~~ 169 (181)
+.+. ++..+|+.+ +.++.++..++.+.--.-|+-.
T Consensus 73 i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 117 (241)
T d2a4ka1 73 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 117 (241)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccEeccccccccccchhhhhcccccccccccccccccc
Confidence 9875 688888754 2344555555555444444433
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.05 E-value=0.14 Score=39.71 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=55.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+..... ..++..++...+ +..|.+.++.+.+.++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~-~~~~~~~----------~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 74 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAI-ADLVPAP----------EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV 74 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESSCCH----------HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCchH----------HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45777799999999999999999999763 3332211 112222222222 445778999999999999
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 75 ~~~~G~iDilVn-nAG~ 90 (247)
T d2ew8a1 75 ISTFGRCDILVN-NAGI 90 (247)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHcCCCCEEEE-CCCC
Confidence 986 6888888 5554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.96 E-value=0.019 Score=41.94 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=56.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc--cc-cc--c-HHHHhhc---cCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL--PV-FN--S-VAEAKAE---TKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv--PV-y~--s-l~e~~~~---~~~DVaId 121 (181)
.+++..+|+|+|++|-+|....+.+...|...|..++++....+. .|. -+ ++ + .++..+. ..+|++++
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 456778899999999999999998888886544455443311111 121 11 12 2 3444332 35899999
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030220 122 YVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~G 139 (181)
++....+.+.+..+++.|
T Consensus 104 ~~g~~~~~~~a~~~l~~~ 121 (170)
T d1jvba2 104 LNNSEKTLSVYPKALAKQ 121 (170)
T ss_dssp SCCCHHHHTTGGGGEEEE
T ss_pred ccccchHHHhhhhhcccC
Confidence 999888877777777665
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.036 Score=41.53 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=62.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeec---------------CCCCCCe-------E--------EcCccccc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGV---------------TPKKGGT-------E--------HLGLPVFN 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagV---------------dP~~~G~-------e--------i~GvPVy~ 105 (181)
|.||.|.|.||..|+-..+.+.++ .|++++.. .|....- + ..+++++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~ 80 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS 80 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence 468999999999999888888774 68888742 2221100 0 01345554
Q ss_pred ---cHHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 106 ---SVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 106 ---sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
.+.++....++|+++-.+.-.+...-...|+++|.+..+.
T Consensus 81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA 123 (151)
T d1q0qa2 81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA 123 (151)
T ss_dssp SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence 3555555457899999999999999999999999865544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.91 E-value=0.038 Score=43.36 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=57.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+. ++.+.. .++++.++.+.+ +..|.+.++.+.+.+++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~-~~r~~~-----------~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 72 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAI-ADINLE-----------AARATAAEIGPAACAIALDVTDQASIDRCVAE 72 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEE-EESCHH-----------HHHHHHHHHCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHHHHHhCCceEEEEeeCCCHHHHHHHHHH
Confidence 456888899999999999999999999763 343221 123333322222 45577899999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~iDilVn-nAg~ 89 (256)
T d1k2wa_ 73 LLDRWGSIDILVN-NAAL 89 (256)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHhCCccEEEe-eccc
Confidence 9986 7888887 5554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=93.89 E-value=0.036 Score=41.40 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHh--CCeEeeec---------------CCCCCC-------eE----E--cCcccccc-
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGV---------------TPKKGG-------TE----H--LGLPVFNS- 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~--g~~IVagV---------------dP~~~G-------~e----i--~GvPVy~s- 106 (181)
+.+|+|.|+||..|+-..+.+.++ .|+|++.. +|.... .+ . ..+.++..
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~ 81 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 81 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence 478999999999999888888774 68888742 122110 00 0 12444443
Q ss_pred --HHHHhhccCCcEEEEeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 107 --VAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 107 --l~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+.++ ...++|+++..+.-.+....+..|+++|.+..+.
T Consensus 82 ~~l~~~-~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA 121 (150)
T d1r0ka2 82 DALVEA-AMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 121 (150)
T ss_dssp HHHHHH-HTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred cchhee-cccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence 3333 2347899999999999999999999999776543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.87 E-value=0.054 Score=42.65 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=62.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
+.++++|.|+++.+|+++++.+.+.|.+|+ .++.+.. +.. .-.+++ ++...+ +.+|.+.++.+.+.++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~-i~~r~~~--~l~-----~~~~~~-~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVY-TCSRNEK--ELD-----ECLEIW-REKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESCHH--HHH-----HHHHHH-HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHH--HHH-----HHHHHH-HhcCCCceEEEeecCCHHHHHHHHH
Confidence 456799999999999999999999999976 3444321 111 112222 222222 2468899999999999
Q ss_pred HHHHc--C-CCEEEEeCCC---------CCHHHHHHHHHHhh
Q 030220 134 EAMEA--E-LDLVVCITEG---------IPQHDMVINFTRVN 163 (181)
Q Consensus 134 eaie~--G-Ik~IV~iTtG---------~~~ed~~~l~~~ak 163 (181)
++.+. | +..+++ ..| +++++..++.+.--
T Consensus 76 ~~~~~~~g~idilin-nag~~~~~~~~~~~~~~~~~~~~~nl 116 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVN-NAGVVIHKEAKDFTEKDYNIIMGTNF 116 (258)
T ss_dssp HHHHHTTSCCCEEEE-CCCCCCCCCTTTCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCcEEEec-cccccccCccccCCHHHHhhhhhhcc
Confidence 99976 4 556665 433 35555555544433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.79 E-value=0.099 Score=38.46 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=59.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCC--CeEE---------cCcc--c--cccHHHHhhccCCc
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG--GTEH---------LGLP--V--FNSVAEAKAETKAN 117 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~--G~ei---------~GvP--V--y~sl~e~~~~~~~D 117 (181)
+..++.||.|+|+ |+.|+...-.+...++ +++ .+|.+.. ..+. .+.+ + -.+.++..+ +.|
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ad 78 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GAD 78 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCS
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc--CCC
Confidence 4567799999998 9999876665555565 544 6664432 1111 1111 1 113556666 799
Q ss_pred EEEEeeC---------------------hHHHHHHHHHHHHcCCCEEEEeCCC
Q 030220 118 ASVIYVP---------------------PPFAAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 118 VaIdfVP---------------------p~~a~~~~~eaie~GIk~IV~iTtG 149 (181)
++|++.. ...+.+.++.+.+.+.+.++++.+.
T Consensus 79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999762 2257788888888899998776554
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.64 E-value=0.13 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+.++|+|.|+||-.|+.+++.+.+.|.+|++.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~ 46 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGL 46 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEE
Confidence 34578888999999999999999999998864
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.074 Score=42.11 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=27.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
.||+|.|+||-.|+.+++.+++.|.+|++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~l 32 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI 32 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 479999999999999999999999998864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.099 Score=44.68 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=60.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE------------E----------------cCccc--cc-c
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------------H----------------LGLPV--FN-S 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e------------i----------------~GvPV--y~-s 106 (181)
+.||+|+|+ |-.|..+++.+...|+.-+-.+|+...... + .++.| +. .
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 468999999 889999999999888864445555443310 0 12222 11 2
Q ss_pred H----HHHhhccCCcEEEEeeChHHHHHHHHHHH-------------HcCCCEEEEeCCCC
Q 030220 107 V----AEAKAETKANASVIYVPPPFAAAAIMEAM-------------EAELDLVVCITEGI 150 (181)
Q Consensus 107 l----~e~~~~~~~DVaIdfVPp~~a~~~~~eai-------------e~GIk~IV~iTtG~ 150 (181)
+ .++.+ ++|++++.+..-.+...+..+. +++++.|.+-++|+
T Consensus 116 i~~~~~~~~~--~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~ 174 (426)
T d1yovb1 116 IQDFNDTFYR--QFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGF 174 (426)
T ss_dssp GGGBCHHHHT--TCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETT
T ss_pred ccchHHHHHH--hcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeee
Confidence 2 34444 7999999999888877776654 56888887655554
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.50 E-value=0.06 Score=42.43 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMV 86 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IV 86 (181)
|||+|.|+||-.|+.+++.+.+.|.++.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~ 28 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV 28 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence 5899999999999999999999776544
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.033 Score=42.84 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
+||+++|. +.+|....+.+.+.|++|++.+.
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt 31 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFT 31 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEc
Confidence 57999988 77999999999999999998775
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.25 E-value=0.041 Score=43.16 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=43.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC------CCC---e---EE---------cCccccccHHHHhhccCCc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK------KGG---T---EH---------LGLPVFNSVAEAKAETKAN 117 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~------~~G---~---ei---------~GvPVy~sl~e~~~~~~~D 117 (181)
++++|.|+||-.|+.+++.+++.|.+|++..... +.. . .+ .++.-+.++++.++..++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 4688899999999999999999999998643321 100 0 00 1333334566666666899
Q ss_pred EEEEee
Q 030220 118 ASVIYV 123 (181)
Q Consensus 118 VaIdfV 123 (181)
+++-+.
T Consensus 82 ~Vih~A 87 (339)
T d1n7ha_ 82 EVYNLA 87 (339)
T ss_dssp EEEECC
T ss_pred hhhhcc
Confidence 988765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.23 E-value=0.13 Score=40.23 Aligned_cols=90 Identities=20% Similarity=0.086 Sum_probs=59.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+....+ +.+... ..=+-+|.+.++.++++++++.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~-~~~~~~~~~---------~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVAL-CDLRPEGKE---------VAEAIG--GAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESSTTHHH---------HHHHHT--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHH---------HHHHcC--CeEEEEeCCCHHHHHHHHHHHHHh
Confidence 56888899999999999999999999653 333221111 111111 111346778999999999999987
Q ss_pred --CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 139 --ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 139 --GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+|..+|+ ..|+ +++|..++.+.
T Consensus 74 ~G~iDiLVn-nAG~~~~~~~~~~~~e~~~~~~~v 106 (248)
T d2d1ya1 74 LGRVDVLVN-NAAIAAPGSALTVRLPEWRRVLEV 106 (248)
T ss_dssp HSCCCEEEE-CCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred cCCCCeEEE-eCcCCCCCChhhCCHHHHHHHHHh
Confidence 6888887 5443 55555554443
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=93.23 E-value=0.069 Score=42.47 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCe--EeeecCC-CCCCeE-----E--cCcccc-------ccHHHHhhccCCcEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTK--MVGGVTP-KKGGTE-----H--LGLPVF-------NSVAEAKAETKANAS 119 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~--IVagVdP-~~~G~e-----i--~GvPVy-------~sl~e~~~~~~~DVa 119 (181)
+++||+|.|+||-.|+.+++.+++.|.+ ++ ++|+ ...+.. . .+++.+ +.+.++.+ .+|.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~-~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~--~~~~v 77 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT-VLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAI 77 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEE-EEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE-EEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHh--hhhhh
Confidence 4789999999999999999999887655 44 3442 111110 0 122222 23555555 67776
Q ss_pred EEeeCh------------------HHHHHHHHHHHHcCCCEEEEeC
Q 030220 120 VIYVPP------------------PFAAAAIMEAMEAELDLVVCIT 147 (181)
Q Consensus 120 IdfVPp------------------~~a~~~~~eaie~GIk~IV~iT 147 (181)
+.+.-. .....+++.+...+++.|+..|
T Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss 123 (346)
T d1oc2a_ 78 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123 (346)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hhhhhcccccchhhCcccceeeehHhHHhhhhhhcccccccccccc
Confidence 666321 1244456778888988877644
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.13 E-value=0.016 Score=42.85 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=59.5
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc----cHHHHhhc---cCCcEEEE
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN----SVAEAKAE---TKANASVI 121 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~----sl~e~~~~---~~~DVaId 121 (181)
..+++..+|+|+|+ |-+|...++.++..|.+.|..+++.....+. .|. .+++ ++.|.+++ ..+|++++
T Consensus 24 ~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 24 LKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp TCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred hCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence 35778889999999 9999999999988888866665543311111 132 2322 33333222 25899999
Q ss_pred eeChHHHHHHHHHHHHcCCCEEE
Q 030220 122 YVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~GIk~IV 144 (181)
++......+.+..+++.+=+.++
T Consensus 103 ~~G~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 103 STGSPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp CSCCHHHHHHHHHTEEEEEEEEE
T ss_pred cCCcHHHHHHHHhcccCceEEEE
Confidence 99988877777776665444433
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=93.07 E-value=0.16 Score=40.77 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=25.9
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEee
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVG 87 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVa 87 (181)
.+||+|.|++|-+|+.+++.+++ .|.+|++
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~ 32 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVI 32 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEE
Confidence 46899999999999999998876 4888874
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.96 E-value=0.018 Score=40.60 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=25.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+||+|+|.+|.||+.+.+.+.+.|.+|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l 29 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVV 29 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEE
Confidence 57999977799999999999999999664
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.92 E-value=0.033 Score=41.22 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=54.1
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCe-EEcCcc---ccc---cHHHHh---hccCCcEEEEe
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLP---VFN---SVAEAK---AETKANASVIY 122 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~-ei~GvP---Vy~---sl~e~~---~~~~~DVaIdf 122 (181)
.+++..+|+|.|++|..|+...+.....|.++++.+. +++... +-.|.. .|+ ..+++. ....+|+++|+
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 4577788999999999999999999999999997654 322110 001211 112 133332 33469999999
Q ss_pred eChHHHHHHHHHHHHcC
Q 030220 123 VPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 123 VPp~~a~~~~~eaie~G 139 (181)
+..+..++.+..+-..|
T Consensus 106 vG~~~~~~~~~~l~~~G 122 (182)
T d1v3va2 106 VGGEFLNTVLSQMKDFG 122 (182)
T ss_dssp SCHHHHHHHGGGEEEEE
T ss_pred cCchhhhhhhhhccCCC
Confidence 98765554444333333
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=0.033 Score=41.16 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=48.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeEE--cCc---ccccc-HHHHhhccCCcEEEEeeCh
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGL---PVFNS-VAEAKAETKANASVIYVPP 125 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~ei--~Gv---PVy~s-l~e~~~~~~~DVaIdfVPp 125 (181)
.+.+..+|+|.|++|..|+..++..+..|.++++.+. +.+.. .. .|. --|.+ .++......+|++++++.+
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~ 101 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK 101 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccc-cccccccceeeehhhhhhhhhccccccccccccch
Confidence 3567888999999999999999999999999887654 33221 11 122 22444 3344344479999998874
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.039 Score=42.43 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=44.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCCeE--------EcCccccc------------cHHHHhhccCCc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE--------HLGLPVFN------------SVAEAKAETKAN 117 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G~e--------i~GvPVy~------------sl~e~~~~~~~D 117 (181)
+||++.|. +..|..+.+.+.+.|++|++.+. |.+.+.. ..++|+|. ++-+.+++.++|
T Consensus 1 MkI~~~G~-~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~D 79 (203)
T d2bw0a2 1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAE 79 (203)
T ss_dssp CEEEEECC-HHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCS
T ss_pred CEEEEEcC-CHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCC
Confidence 58999998 78899999999889999998764 3322211 25788764 122334556789
Q ss_pred EEEEee
Q 030220 118 ASVIYV 123 (181)
Q Consensus 118 VaIdfV 123 (181)
++|.+.
T Consensus 80 liv~~~ 85 (203)
T d2bw0a2 80 LNVLPF 85 (203)
T ss_dssp EEEESS
T ss_pred ceEEee
Confidence 888754
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.69 E-value=0.11 Score=40.42 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=59.6
Q ss_pred CceEE-EEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 58 NTRVI-CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rVi-VvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
+.||+ |.|+++.+|+.+++.+.+.|.+|+ .++.+.. . .-...+++ ++...+ +..|.+.++.+.++++
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~-~~~r~~~--~-----l~~~~~~l-~~~g~~~~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVI-CISRTQK--S-----CDSVVDEI-KSFGYESSGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEE-EEESSHH--H-----HHHHHHHH-HTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECCHH--H-----HHHHHHHH-HhcCCcEEEEEccCCCHHHHHHHHH
Confidence 34454 559999999999999999999966 3443321 1 11112222 222222 4557788999999999
Q ss_pred HHHHc--CCCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 134 EAMEA--ELDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
++.+. ++..+|+ ..| ++++|..++.+.
T Consensus 80 ~~~~~~g~iDilvn-nag~~~~~~~~~~~~~~~~~~~~v 117 (251)
T d2c07a1 80 KILTEHKNVDILVN-NAGITRDNLFLRMKNDEWEDVLRT 117 (251)
T ss_dssp HHHHHCSCCCEEEE-CCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHhcCCceeeee-ccccccccccccccHHHHhhhhee
Confidence 99876 5777777 434 355555555443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.63 E-value=0.074 Score=41.95 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+..... .. ..+.+.+++...+ +..|.+.++.+.++++++
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~-~~r~~~~-~~------~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVV-NYRSKED-EA------NSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEE-EESSCHH-HH------HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCCcHH-HH------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45777799999999999999999999773 3332210 00 1122222222333 345778899999999999
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. +|..+|+ ..|+
T Consensus 80 ~~~~G~iDiLVn-nAG~ 95 (261)
T d1geea_ 80 IKEFGKLDVMIN-NAGL 95 (261)
T ss_dssp HHHHSCCCEEEE-CCCC
T ss_pred HHHhCCCCEeec-ccee
Confidence 877 7888888 5444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=92.61 E-value=0.19 Score=36.69 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCC---Ce--EE------cC-ccccc-cHHHHhhccCCcEEEE
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH------LG-LPVFN-SVAEAKAETKANASVI 121 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~---G~--ei------~G-vPVy~-sl~e~~~~~~~DVaId 121 (181)
+++||.|+|+ |+.|....-.+...|. +++ .+|.... |+ ++ .+ ..++. +.+++ + ++|++|+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~--~adivvi 78 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-K--DADLVVI 78 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-T--TCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EeecccchhHHHHHHHhccccccCCceEeeccHHHh-c--cccEEEE
Confidence 4579999997 9999988777777653 444 6664431 10 11 01 12222 34443 3 7999999
Q ss_pred eeCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030220 122 YVPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 122 fVPp----------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~ 157 (181)
+... ..+.+.++.+.+.+.+.++++.+. |..-+..
T Consensus 79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN-Pvdv~t~ 129 (146)
T d1ez4a1 79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN-PVDILTY 129 (146)
T ss_dssp CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS-SHHHHHH
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC-ccHHHHH
Confidence 7532 245678888889999998887776 6654443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.51 E-value=0.14 Score=37.92 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=57.5
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc------cHHHHh---hccCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN------SVAEAK---AETKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~------sl~e~~---~~~~~DVaI 120 (181)
.+++..+|+|+|+ |-+|....+.....|.+.|..+|+...-.+. .|. .+++ ..++.. ....+|+++
T Consensus 25 ~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 25 KVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 4677788999998 9999999999999998644445544322111 121 2222 123222 234799999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030220 121 IYVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~G 139 (181)
+++..+.+.+.+.+++..|
T Consensus 104 e~~G~~~~~~~a~~~~~~g 122 (174)
T d1e3ia2 104 DCAGTAQTLKAAVDCTVLG 122 (174)
T ss_dssp ESSCCHHHHHHHHHTBCTT
T ss_pred EecccchHHHHHHHHhhcC
Confidence 9999998888888887664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.36 E-value=0.011 Score=43.88 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=54.1
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCeEE---cCc-ccc----ccHHH----H---hhccCCcE
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEH---LGL-PVF----NSVAE----A---KAETKANA 118 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~ei---~Gv-PVy----~sl~e----~---~~~~~~DV 118 (181)
+.+..+|+|+|+ |.+|...++..+..|.+ |+ .++++....+. .|- .+. .+..+ + .....+|+
T Consensus 26 ~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 26 SFAGKTVVIQGA-GPLGLFGVVIARSLGAENVI-VIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEE-EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCEEEEECC-Cccchhheeccccccccccc-ccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceE
Confidence 455678999998 99999999999888984 44 34432211111 121 111 12222 2 22235899
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEE
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~I 143 (181)
+++++....+.+.+..++..|=+.+
T Consensus 104 vid~vG~~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 104 ILEATGDSRALLEGSELLRRGGFYS 128 (182)
T ss_dssp EEECSSCTTHHHHHHHHEEEEEEEE
T ss_pred EeecCCchhHHHHHHHHhcCCCEEE
Confidence 9999988777777777777664443
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.074 Score=41.09 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=30.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 95 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G 95 (181)
+.+|+|+|+ |-.|..+++.+...|..-+..||+....
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve 66 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVS 66 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence 468999999 9999999999999998866677766654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.32 E-value=0.19 Score=39.24 Aligned_cols=82 Identities=22% Similarity=0.166 Sum_probs=54.3
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+. ++. -...+++... -.-+..|.+.++.+.+.++++.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~-~~r~~--~~~-----~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVF-GDILD--EEG-----KAMAAELADA-ARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCH--HHH-----HHHHHHTGGG-EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCH--HHH-----HHHHHHhhCc-ceEEEeecCCHHHHHHHHHHHHHH
Confidence 45777799999999999999999999763 34322 111 0111222111 112446778899999999999886
Q ss_pred --CCCEEEEeCCCC
Q 030220 139 --ELDLVVCITEGI 150 (181)
Q Consensus 139 --GIk~IV~iTtG~ 150 (181)
++..+|+ ..|+
T Consensus 78 ~g~idilin-nAG~ 90 (244)
T d1nffa_ 78 FGGLHVLVN-NAGI 90 (244)
T ss_dssp HSCCCEEEE-CCCC
T ss_pred hCCCeEEEE-CCcc
Confidence 6888887 5444
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.028 Score=41.08 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=53.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc--cHHHHh-hccCCcEEEEeeChH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN--SVAEAK-AETKANASVIYVPPP 126 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~--sl~e~~-~~~~~DVaIdfVPp~ 126 (181)
.+++..+|+|.|+ |-+|...++.....|.++|+ ++......+. .|. .+++ +-.... ....+|++++++...
T Consensus 27 ~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~-~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 27 QAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVA-FTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEE-EESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred CCCCCCEEEEecc-chHHHHHHHHhhcccccchh-hccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc
Confidence 4677888999998 99999999999889999875 4433222111 121 2222 222221 223699999999876
Q ss_pred HHHHHHHHHHHcC
Q 030220 127 FAAAAIMEAMEAE 139 (181)
Q Consensus 127 ~a~~~~~eaie~G 139 (181)
...+.+..++..|
T Consensus 105 ~~~~~~~~~l~~~ 117 (168)
T d1uufa2 105 HNLDDFTTLLKRD 117 (168)
T ss_dssp CCHHHHHTTEEEE
T ss_pred hhHHHHHHHHhcC
Confidence 6555555555554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.30 E-value=0.19 Score=39.19 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcE---EEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA---SVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DV---aIdfVPp~~a~~~~~ea 135 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+... . . ..+.+.+++...++ ..|...++.+.+.++++
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi-~~~~~~~--~----~-~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIV-NYANSTE--S----A-EEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESSCHH--H----H-HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEE-EeCCchH--H----H-HHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 56888899999999999999999999763 2322211 0 0 11222222223333 24778899999999999
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|+ ..|
T Consensus 91 ~~~~g~idilV~-nag 105 (272)
T d1g0oa_ 91 VKIFGKLDIVCS-NSG 105 (272)
T ss_dssp HHHHSCCCEEEE-CCC
T ss_pred HHHhCCCCcccc-ccc
Confidence 876 6777777 534
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.22 E-value=0.16 Score=39.83 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=61.5
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIM 133 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ 133 (181)
+.+.++|.|+++-+|+.+++.+.+.|.+|+. ++.+.. +. -...+++.+ ...+ +..|.+.++.+.++++
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~-~~r~~~--~l-----~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHT-CARNEY--EL-----NECLSKWQK-KGFQVTGSVCDASLRPEREKLMQ 77 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HH-----HHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHH--HH-----HHHHHHHHh-cCCceEEEeccCCCHHHHHHHHH
Confidence 3466888899999999999999999999763 444321 11 111222222 1222 3456778899999999
Q ss_pred HHHHc--C-CCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 134 EAMEA--E-LDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 134 eaie~--G-Ik~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
++.+. | +..+|+ ..|+ +.+|..++.+.
T Consensus 78 ~~~~~~~g~idilvn-nAG~~~~~~~~~~~~~~~~~~~~v 116 (259)
T d1xq1a_ 78 TVSSMFGGKLDILIN-NLGAIRSKPTLDYTAEDFSFHIST 116 (259)
T ss_dssp HHHHHHTTCCSEEEE-ECCC------CCCCHHHHHHHHHH
T ss_pred HHHHHhCCCcccccc-cccccCCCchhhCCHHHHHHHHHH
Confidence 98875 5 788887 4443 55555555544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.86 E-value=0.28 Score=38.16 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=54.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC---CcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK---ANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~---~DVaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ ..+.+.. .++++.++.. .-+-.|.+.++.+.+++++
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVA-FSDINEA-----------AGQQLAAELGERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECSCHH-----------HHHHHHHHHCTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHH-----------HHHHHHHHhCCCeEEEEeecCCHHHHHHHHHH
Confidence 35577779999999999999999999976 3443221 1222222211 1233467789999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 74 ~~~~~g~iDilVn-nAG~ 90 (253)
T d1hxha_ 74 VQRRLGTLNVLVN-NAGI 90 (253)
T ss_dssp HHHHHCSCCEEEE-CCCC
T ss_pred HHHHhCCCCeEEe-cccc
Confidence 9876 6888887 5443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.75 E-value=0.11 Score=37.75 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=59.3
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cC---ccccc----cHHHHhhc---cCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LG---LPVFN----SVAEAKAE---TKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~G---vPVy~----sl~e~~~~---~~~DVaI 120 (181)
.+++...|+|+|+ |-.|...+..+...|...|..++.+....+. .| .-.|. .+++..+. ..+|+++
T Consensus 25 ~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 25 KVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 4677788999999 6699999998888876544455544322211 11 12222 23333322 3689999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEEE
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVVC 145 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV~ 145 (181)
+++......+.+.+++..|-..++.
T Consensus 104 d~~G~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 104 EVIGRLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp ECSCCHHHHHHHHHHBCTTTCEEEE
T ss_pred ecCCchhHHHHHHHHHhcCCcceEE
Confidence 9999998888888888776444333
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.66 E-value=0.17 Score=39.52 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=54.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . -...+++.....+. +..|.+.++.+.+.++++.
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~-i~~r~~~~--~-----~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVV-IADIADDH--G-----QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--H-----HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCHHH--H-----HHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 35577889999999999999999999966 34433210 0 00112221111111 3457788999999999998
Q ss_pred Hc--CCCEEEEeCCC
Q 030220 137 EA--ELDLVVCITEG 149 (181)
Q Consensus 137 e~--GIk~IV~iTtG 149 (181)
+. ++..+|+ ..|
T Consensus 78 ~~~g~iD~lVn-nAG 91 (268)
T d2bgka1 78 AKHGKLDIMFG-NVG 91 (268)
T ss_dssp HHHSCCCEEEE-CCC
T ss_pred HHcCCcceecc-ccc
Confidence 76 7888887 443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.63 E-value=0.15 Score=39.80 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=55.3
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . +.+.+.+++...+ +..|.+.++.+.+.+++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~~~~--l------~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIA-LLDMNREA--L------EKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--H------HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHHH--H------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45678889999999999999999999966 34433211 1 1122222222333 33566789999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 76 ~~~~~g~iDilVn-naG 91 (260)
T d1zema1 76 VVRDFGKIDFLFN-NAG 91 (260)
T ss_dssp HHHHHSCCCEEEE-CCC
T ss_pred HHHHhCCCCeehh-hhc
Confidence 9886 6888887 433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.2 Score=40.17 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc----cCCc---EEEEeeChHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKAN---ASVIYVPPPFAAA 130 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~----~~~D---VaIdfVPp~~a~~ 130 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+. ++.+... . -...+|+.++ .+.+ +..|.+.++.+.+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi-~~r~~~~--l-----~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 83 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVI-ASRKLER--L-----KSAADELQANLPPTKQARVIPIQCNIRNEEEVNN 83 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--H-----HHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--H-----HHHHHHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence 356888899999999999999999999763 3433211 1 1112222211 1223 3457788999999
Q ss_pred HHHHHHHc--CCCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 131 AIMEAMEA--ELDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 131 ~~~eaie~--GIk~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
.++++.+. ++..+|+ ..| ++++|..++.+.
T Consensus 84 ~~~~~~~~~G~iDiLVn-nAg~~~~~~~~~~~~e~~~~~~~v 124 (297)
T d1yxma1 84 LVKSTLDTFGKINFLVN-NGGGQFLSPAEHISSKGWHAVLET 124 (297)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEe-eccccccCchhhhhhhhhhhhhcc
Confidence 99999876 6888887 445 345565555443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=91.52 E-value=0.098 Score=35.96 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=48.8
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCccccc---cHHHHhhccCCcEEEEeeChHH
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN---SVAEAKAETKANASVIYVPPPF 127 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~GvPVy~---sl~e~~~~~~~DVaIdfVPp~~ 127 (181)
+..+|+|+|. |+.|..-++.+++.|.++. .++|.... ++ .++..-. +-++ ++ ++++++..+....
T Consensus 11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~-v~~~~~~~-~~~~~~~~~~i~~~~~~~~~~d-l~--~~~lv~~at~d~~ 84 (113)
T d1pjqa1 11 RDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFIP-QFTVWANEGMLTLVEGPFDETL-LD--SCWLAIAATDDDT 84 (113)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCCH-HHHHHHTTTSCEEEESSCCGGG-GT--TCSEEEECCSCHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEeccCCh-HHHHHHhcCCceeeccCCCHHH-hC--CCcEEeecCCCHH
Confidence 4578999999 9999999999999998865 35555432 11 1121111 1122 22 5677777665544
Q ss_pred H-HHHHHHHHHcCCC
Q 030220 128 A-AAAIMEAMEAELD 141 (181)
Q Consensus 128 a-~~~~~eaie~GIk 141 (181)
. ..+..+|-+.|+.
T Consensus 85 ~n~~i~~~a~~~~il 99 (113)
T d1pjqa1 85 VNQRVSDAAESRRIF 99 (113)
T ss_dssp HHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCE
Confidence 4 4555666666665
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.40 E-value=0.12 Score=40.95 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=29.5
Q ss_pred CceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPK 92 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~ 92 (181)
..+|+|+|+ |+.|+...+.+.+ .|.++|+..|..
T Consensus 32 g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~~ 66 (239)
T d1gtma1 32 GKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDSK 66 (239)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhcCcceeeccccc
Confidence 468999999 9999999998876 699999987765
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.38 E-value=0.16 Score=37.62 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=46.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeec-CCCCCCeEE---cC---ccccc--cHHHHhhc---cCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH---LG---LPVFN--SVAEAKAE---TKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagV-dP~~~G~ei---~G---vPVy~--sl~e~~~~---~~~DVaIdfVPp~ 126 (181)
..|+|.|++|-.|+...+..+..|.+.|.++ +......+. .| +--|. ++.+.+++ ..+|+++|++-.+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~ 111 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGD 111 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCHH
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCCch
Confidence 4599999999999999999998998755443 321110000 11 11122 23333322 3589999999866
Q ss_pred HHHHHHHHHHHcC
Q 030220 127 FAAAAIMEAMEAE 139 (181)
Q Consensus 127 ~a~~~~~eaie~G 139 (181)
..... ..++..|
T Consensus 112 ~~~~~-~~~l~~~ 123 (187)
T d1vj1a2 112 ISNTV-ISQMNEN 123 (187)
T ss_dssp HHHHH-HTTEEEE
T ss_pred hHHHH-hhhcccc
Confidence 54443 3444433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.37 E-value=0.14 Score=37.94 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=55.0
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cC-ccccc-----c-HHHHh---hccCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LG-LPVFN-----S-VAEAK---AETKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~G-vPVy~-----s-l~e~~---~~~~~DVaI 120 (181)
.+++...|+|+|+ |-+|....+.....|..-|-.+|++....++ .| -.+++ + .++.. ....+|++|
T Consensus 26 ~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 26 KVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence 3677778999999 9999999999999986544366655432111 11 11222 1 23222 234799999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030220 121 IYVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~G 139 (181)
+++....+.+.+..++..|
T Consensus 105 ~~~g~~~~~~~a~~~~~~~ 123 (176)
T d1d1ta2 105 EVIGHLETMIDALASCHMN 123 (176)
T ss_dssp ECSCCHHHHHHHHTTSCTT
T ss_pred EeCCchHHHHHHHHHhhcC
Confidence 9999887776666655444
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.20 E-value=0.28 Score=37.44 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=29.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPK 92 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~ 92 (181)
.++|+|.|+++.+|+.+++.+.+.|.+++. +.++.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 467999999999999999999999999764 34433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.11 E-value=0.15 Score=39.65 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccH-HHHhhccCCcEE---EEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSV-AEAKAETKANAS---VIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl-~e~~~~~~~DVa---IdfVPp~~a~~~~~e 134 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+ ..+.+... .. ..+ +++.+....++. .|.+.++.+.+.+++
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~-~~~r~~~~-~~------~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIV-LNGFGDAA-EI------EKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEE-EECCSCHH-HH------HHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCCcHH-HH------HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 4567779999999999999999999976 33432211 00 111 222222233433 577889999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 77 ~~~~~G~iDiLVn-nAG 92 (260)
T d1x1ta1 77 AVRQMGRIDILVN-NAG 92 (260)
T ss_dssp HHHHHSCCSEEEE-CCC
T ss_pred HHHHhCCCcEEEe-ecc
Confidence 9876 6888887 545
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.06 Score=39.18 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=53.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCeEE--cCc-ccc--c--cHH-HHh---hccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEH--LGL-PVF--N--SVA-EAK---AETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~ei--~Gv-PVy--~--sl~-e~~---~~~~~DVaId 121 (181)
.+.+..+|+|.|++|..|+..++..+..|.++++. .++.+.. .. .|. .|+ + ++. ++. ....+|++++
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~-~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ-SALKAGAWQVINYREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHH-HHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEe
Confidence 34567789999999999999999999999998865 3332211 00 121 122 2 232 222 2336899999
Q ss_pred eeChHHHHHHHHHHHHcC
Q 030220 122 YVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 122 fVPp~~a~~~~~eaie~G 139 (181)
++..+......+.+-..|
T Consensus 104 ~~g~~~~~~~~~~l~~~G 121 (179)
T d1qora2 104 SVGRDTWERSLDCLQRRG 121 (179)
T ss_dssp CSCGGGHHHHHHTEEEEE
T ss_pred CccHHHHHHHHHHHhcCC
Confidence 999887665555443444
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.83 E-value=0.18 Score=37.33 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=58.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eEE-cC-ccccc-cHHHHhh---------------ccCCcEE
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LG-LPVFN-SVAEAKA---------------ETKANAS 119 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~ei-~G-vPVy~-sl~e~~~---------------~~~~DVa 119 (181)
|||+|+|. |..|...+-.+ +.|++++ |+|.+..- ..+ .| .|++. .+++..+ ..++|+.
T Consensus 1 MkI~ViGl-G~vGl~~a~~~-a~g~~V~-g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii 77 (196)
T d1dlja2 1 MKIAVAGS-GYVGLSLGVLL-SLQNEVT-IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV 77 (196)
T ss_dssp CEEEEECC-SHHHHHHHHHH-TTTSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred CEEEEECC-ChhHHHHHHHH-HCCCcEE-EEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccc
Confidence 58999998 99999766544 5699988 55544311 000 11 23332 1222111 1258888
Q ss_pred EEeeChH-----------HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhh
Q 030220 120 VIYVPPP-----------FAAAAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNI 164 (181)
Q Consensus 120 IdfVPp~-----------~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ 164 (181)
++.||.. .+..+.+......-..++++.+=++.....++...-..
T Consensus 78 ~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~ 133 (196)
T d1dlja2 78 IIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQT 133 (196)
T ss_dssp EECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred cccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccch
Confidence 8888753 34445555555544445555766777777777655443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.81 E-value=0.1 Score=41.12 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc----cCC-cEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~----~~~-DVaIdfVPp~~a~~~~~ 133 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... .. . ..+++.+. .++ -+..|.+.++.+.++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~-l~~r~~~~--l~--~---~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVT-ITGRSSER--LE--E---TRQIILKSGVSEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEE-EEESCHHH--HH--H---HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEE-EEECCHHH--HH--H---HHHHHHhcCCCCCceEEEEccCCCHHHHHHHHH
Confidence 5677889999999999999999999966 34433211 10 0 11222111 011 14457788999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|.
T Consensus 78 ~~~~~~g~iDilvn-nAG~ 95 (272)
T d1xkqa_ 78 STLKQFGKIDVLVN-NAGA 95 (272)
T ss_dssp HHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHhCCceEEEe-CCcc
Confidence 99987 7888888 5454
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.80 E-value=0.3 Score=38.26 Aligned_cols=80 Identities=21% Similarity=0.114 Sum_probs=54.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc--CC-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET--KA-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~--~~-DVaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.... .+++..++. ++ -+..|.+.++.+.+++++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~~~-----------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVV-LADVLDE-----------EGAATARELGDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCHH-----------HHHHHHHTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECCHH-----------HHHHHHHHhCCceEEEEcccCCHHHHHHHHHH
Confidence 45688889999999999999999999966 3343221 122222211 11 234567889999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~iDilVn-nAg~ 89 (254)
T d1hdca_ 73 AREEFGSVDGLVN-NAGI 89 (254)
T ss_dssp HHHHHSCCCEEEE-CCCC
T ss_pred HHHHcCCccEEEe-cCcc
Confidence 9876 6888887 5443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.79 E-value=0.13 Score=37.16 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=58.6
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc------cHHHHhh---ccCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN------SVAEAKA---ETKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~------sl~e~~~---~~~~DVaI 120 (181)
.+++..+|+|+|+ |-.|......+...+...|..+|+.....+. .|- .+++ ..++..+ ...+|+++
T Consensus 25 ~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 25 KVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence 5678888999998 7788888888888776655566655432111 121 2221 1333332 23699999
Q ss_pred EeeChHHHHHHHHHHHHcCCCEEE
Q 030220 121 IYVPPPFAAAAIMEAMEAELDLVV 144 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~GIk~IV 144 (181)
+++-...+.+.+..++..|-..++
T Consensus 104 d~~G~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 104 ECVGNVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp ECSCCHHHHHHHHHTBCTTTCEEE
T ss_pred eecCCHHHHHHHHHHhhCCCccee
Confidence 999998888888877666544443
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.72 E-value=0.11 Score=40.37 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=54.0
Q ss_pred eE-EEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 60 RV-ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rV-iVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
|| +|-|+++-+|+.+++.+.+.|.+|+. ++.+... .. .+ .+++. +...+ +..|.+.++.+.+.++++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i-~~r~~~~--l~--~~---~~~l~-~~g~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFV-CARGEEG--LR--TT---LKELR-EAGVEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH--HH---HHHHH-HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--HH--HH---HHHHH-hcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 46 55699999999999999999999663 3433211 10 11 22222 22223 345778999999999999
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 74 ~~~~g~iDilVn-nAG~ 89 (257)
T d2rhca1 74 VERYGPVDVLVN-NAGR 89 (257)
T ss_dssp HHHTCSCSEEEE-CCCC
T ss_pred HHHhCCCCEEEe-cccc
Confidence 986 5888887 5443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.69 E-value=0.25 Score=36.31 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=57.9
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cC-ccccc----c--HHHHhhc---cCCcEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LG-LPVFN----S--VAEAKAE---TKANASV 120 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~G-vPVy~----s--l~e~~~~---~~~DVaI 120 (181)
.+++..+|+|+|+ |-.|....+.....|.+.|..+|+.....+. .| -.+++ + +++..+. ..+|+++
T Consensus 24 ~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 24 KVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 4677888999998 9999999999999987655566655422111 22 22322 1 4444332 2689999
Q ss_pred EeeChHHHHHHHHHHHHcC
Q 030220 121 IYVPPPFAAAAIMEAMEAE 139 (181)
Q Consensus 121 dfVPp~~a~~~~~eaie~G 139 (181)
+++....+.+....++..|
T Consensus 103 d~~g~~~~~~~~~~~~~~~ 121 (174)
T d1p0fa2 103 ECAGRIETMMNALQSTYCG 121 (174)
T ss_dssp ECSCCHHHHHHHHHTBCTT
T ss_pred EcCCCchHHHHHHHHHHHh
Confidence 9999988877777766554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.078 Score=41.30 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=53.2
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+... . ..+.+-+...-.-+..|.+.++.+.++++++.+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~-~~r~~~~--l------~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIG-TATSENG--A------QAISDYLGANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEE-EESSHHH--H------HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEE-EeCCHHH--H------HHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 45667799999999999999999999773 3432210 1 1111111111123556778899999999999987
Q ss_pred --CCCEEEEe
Q 030220 139 --ELDLVVCI 146 (181)
Q Consensus 139 --GIk~IV~i 146 (181)
++..+|+-
T Consensus 76 ~g~iDilVnn 85 (243)
T d1q7ba_ 76 FGEVDILVNN 85 (243)
T ss_dssp TCSCSEEEEC
T ss_pred cCCcceehhh
Confidence 68888873
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.43 E-value=0.31 Score=37.99 Aligned_cols=94 Identities=10% Similarity=0.090 Sum_probs=60.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ ..+.+.. .. -...+++.+ ...+ +..|.+.++.+.+++++
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~~~--~l-----~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVY-TCSRNQK--EL-----NDCLTQWRS-KGFKVEASVCDLSSRSERQELMNT 78 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESCHH--HH-----HHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHH--HH-----HHHHHHHHh-cCCCceEEEeeCCCHHHHHHHHHH
Confidence 35578889999999999999999999976 3443321 11 111233322 1222 33567789999999999
Q ss_pred HHHc-C--CCEEEEeCCC---------CCHHHHHHHHHH
Q 030220 135 AMEA-E--LDLVVCITEG---------IPQHDMVINFTR 161 (181)
Q Consensus 135 aie~-G--Ik~IV~iTtG---------~~~ed~~~l~~~ 161 (181)
+.+. | +..+|+ ..| ++.+|..++.+.
T Consensus 79 ~~~~~~~~idilvn-nAG~~~~~~~~~~~~e~~~~~~~v 116 (259)
T d2ae2a_ 79 VANHFHGKLNILVN-NAGIVIYKEAKDYTVEDYSLIMSI 116 (259)
T ss_dssp HHHHTTTCCCEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHhCCCceEEEE-CCceeccCccccCCHHHHHHHHhc
Confidence 8874 3 788888 544 345555554444
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.28 E-value=0.058 Score=36.77 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=30.9
Q ss_pred CceEEEEccCCCCcc-hhhHHHHHhCCeEeeecCCCCCC--e--EEcCccccc
Q 030220 58 NTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGG--T--EHLGLPVFN 105 (181)
Q Consensus 58 ~~rViVvGatGkmG~-~~~k~~~~~g~~IVagVdP~~~G--~--ei~GvPVy~ 105 (181)
++||-++|+ |-.|- .+++.+.+.|+.|- |-|..... + +-.|+++|.
T Consensus 1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~~Vs-GSD~~~~~~t~~L~~~Gi~i~~ 51 (89)
T d1j6ua1 1 HMKIHFVGI-GGIGMSAVALHEFSNGNDVY-GSNIEETERTAYLRKLGIPIFV 51 (89)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHHTTCCEES
T ss_pred CcEEEEEeE-CHHHHHHHHHHHHhCCCeEE-EEeCCCChhHHHHHHCCCeEEe
Confidence 478999999 77777 66777888899776 55543321 0 125788764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.26 E-value=0.079 Score=41.58 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+.. . .-...+++.+ ...+ +..|.+.++.+.+.+++
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~-~~r~~~--~-----~~~~~~~l~~-~g~~~~~~~~Dvs~~~~~~~~~~~ 81 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVV-SDINAD--A-----ANHVVDEIQQ-LGGQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEE-EESCHH--H-----HHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHH--H-----HHHHHHHHHH-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 355777799999999999999999999763 343221 1 1111222222 1222 45677889999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 82 ~~~~~g~iDilvn-nAG~ 98 (255)
T d1fmca_ 82 AISKLGKVDILVN-NAGG 98 (255)
T ss_dssp HHHHHSSCCEEEE-CCCC
T ss_pred HHHHcCCCCEeee-CCcC
Confidence 9986 6888888 5554
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.24 E-value=0.79 Score=34.28 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCceEEEEccCCCCcc-----hhhHHHHHhCCeEeeecCCCCCCeEEcCccccc---cHHHHhhccCCcEEEEeeC----
Q 030220 57 KNTRVICQGITGKNGT-----FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN---SVAEAKAETKANASVIYVP---- 124 (181)
Q Consensus 57 ~~~rViVvGatGkmG~-----~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~---sl~e~~~~~~~DVaIdfVP---- 124 (181)
+..||++. .-|--++ .+...+.+.||+++.. ..+. ++.+...+.++|++.+.+-
T Consensus 36 r~pkVlla-~~g~D~Hd~G~~~va~~l~~~G~eVi~l-------------g~~~~~e~iv~aa~~~~advI~iSs~~~~~ 101 (168)
T d7reqa2 36 RRPRILLA-KMGQDGHDRGQKVIATAYADLGFDVDVG-------------PLFQTPEETARQAVEADVHVVGVSSLAGGH 101 (168)
T ss_dssp SCCEEEEE-CBTTCCCCHHHHHHHHHHHHTTCEEEEC-------------CTTBCHHHHHHHHHHHTCSEEEEEECSSCH
T ss_pred CCCeEEEE-eCCccHHHHHHHHHHHHHHhCCcceecC-------------CCcCcHHHHHHHHHccCCCEEEEecCcccc
Confidence 34556443 3355555 3333445568887631 1222 2333344568999888754
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHh
Q 030220 125 PPFAAAAIMEAMEAELDLVVCITEG-IPQHDMVINFTRV 162 (181)
Q Consensus 125 p~~a~~~~~eaie~GIk~IV~iTtG-~~~ed~~~l~~~a 162 (181)
.+.+.++++++-+.|.+.|.++--| +|.+|..+|.++-
T Consensus 102 ~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~G 140 (168)
T d7reqa2 102 LTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDG 140 (168)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCC
Confidence 6677888888888886544333445 5899998888764
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=90.22 E-value=0.33 Score=38.61 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=52.2
Q ss_pred cCccccccHHHHhhccCCcEEEEeeCh-HHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 99 LGLPVFNSVAEAKAETKANASVIYVPP-PFAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 99 ~GvPVy~sl~e~~~~~~~DVaIdfVPp-~~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
.|+.+.+|..|+.+ ++|++|.++|. +.+.+++++..++-- ..||+-++-++.....++.+.+++-++
T Consensus 127 ~Gv~v~~d~~Eav~--~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi 195 (242)
T d2b0ja2 127 VGLKVTSDDREAVE--GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195 (242)
T ss_dssp GTCEEESCHHHHHT--TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred CCCEEECCHHHHHh--cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence 47888999999988 89999999976 567888888876633 346655777899999999887766544
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.16 E-value=0.026 Score=41.87 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=30.9
Q ss_pred eeccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 53 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 53 ~~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
..++++.+|+|+|+ |-.++.++..+.+.|++-+..+|+.
T Consensus 12 ~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 12 YHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSC
T ss_pred cCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeccc
Confidence 34557789999999 9999999999999998644456654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.16 E-value=0.022 Score=42.64 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=56.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cCc-cccccHHHH----hh---ccCCcEEEEeeChHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGL-PVFNSVAEA----KA---ETKANASVIYVPPPF 127 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~Gv-PVy~sl~e~----~~---~~~~DVaIdfVPp~~ 127 (181)
...|+|.|++|-.|+..++..+..|.++++.+.....-+.. .|. .+++ -++. .+ ...+|+++|.+-.+.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~-~~~~~~~~~~~~~~~gvd~vid~vgg~~ 102 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVIS-REDVYDGTLKALSKQQWQGAVDPVGGKQ 102 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEE-HHHHCSSCCCSSCCCCEEEEEESCCTHH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEe-ccchhchhhhcccCCCceEEEecCcHHH
Confidence 34599999999999999999999999999876643211111 121 1222 1221 11 125899999998887
Q ss_pred HHHHHHHHHHcCCCEEEEeCCC
Q 030220 128 AAAAIMEAMEAELDLVVCITEG 149 (181)
Q Consensus 128 a~~~~~eaie~GIk~IV~iTtG 149 (181)
..+.++.+-..|.=.+++.+.|
T Consensus 103 ~~~~~~~l~~~G~iv~~G~~~g 124 (167)
T d1tt7a2 103 LASLLSKIQYGGSVAVSGLTGG 124 (167)
T ss_dssp HHHHHTTEEEEEEEEECCCSSC
T ss_pred HHHHHHHhccCceEEEeeccCC
Confidence 7765555444443334443443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.15 E-value=0.14 Score=38.06 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=47.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC-cEEEEeeChHHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~-DVaIdfVPp~~a~~~~~eai 136 (181)
.++|+|.|++|-+|+.+++.+.+.|.+++. ++.+... . -...+++.+..++ ....|...++.+.+.+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~~V~~-~~r~~~~--~-----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---- 90 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVL-CGRKLDK--A-----QAAADSVNKRFKVNVTAAETADDASRAEAV---- 90 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESSHHH--H-----HHHHHHHHHHHTCCCEEEECCSHHHHHHHT----
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhccchhh-cccchHH--H-----HHHHHHHHhccchhhhhhhcccHHHHHHHh----
Confidence 478999999999999999999999999663 4433211 1 0111222222222 3445555555554443
Q ss_pred HcCCCEEEEeCCCC
Q 030220 137 EAELDLVVCITEGI 150 (181)
Q Consensus 137 e~GIk~IV~iTtG~ 150 (181)
.++..+|+ .+|.
T Consensus 91 -~~iDilin-~Ag~ 102 (191)
T d1luaa1 91 -KGAHFVFT-AGAI 102 (191)
T ss_dssp -TTCSEEEE-CCCT
T ss_pred -cCcCeeee-cCcc
Confidence 35677777 5554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.13 E-value=0.21 Score=35.58 Aligned_cols=88 Identities=22% Similarity=0.123 Sum_probs=54.1
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cc--cc--cHHHHhhc--cCCcEEEEee
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PV--FN--SVAEAKAE--TKANASVIYV 123 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PV--y~--sl~e~~~~--~~~DVaIdfV 123 (181)
.+++..+|+|.|+ |.+|....+.....|.++++ ++......+. .|. .+ |. +..+.+++ .+.|..|+++
T Consensus 24 ~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~-~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 24 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVA-VDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEE-ECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCCCEEEEeec-ccchhhhhHHHhcCCCeEec-cCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec
Confidence 4667888999998 99999999988888998664 3332211110 121 11 21 23332221 2567777888
Q ss_pred ChHHHHHHHHHHHHcCCCEE
Q 030220 124 PPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~I 143 (181)
......+.+.++++.|=+.+
T Consensus 102 ~~~~~~~~a~~~l~~~G~i~ 121 (168)
T d1rjwa2 102 VSKPAFQSAYNSIRRGGACV 121 (168)
T ss_dssp CCHHHHHHHHHHEEEEEEEE
T ss_pred CCHHHHHHHHHHhccCCceE
Confidence 77777777777776554443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.04 E-value=0.019 Score=42.21 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=56.9
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE----EcCccccc----cHHHHhhc---cCCcEEEEee
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----HLGLPVFN----SVAEAKAE---TKANASVIYV 123 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e----i~GvPVy~----sl~e~~~~---~~~DVaIdfV 123 (181)
+++..+|+|+|+ |-+|....+.....|.+.|..+++.....+ ...-.+++ .+++..+. ..+|++++++
T Consensus 30 ~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 30 LYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred cCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 466778999998 999999999888888765555554321111 11112221 24444432 3589999999
Q ss_pred ChHHHHHHHHHHHHcCCCEE
Q 030220 124 PPPFAAAAIMEAMEAELDLV 143 (181)
Q Consensus 124 Pp~~a~~~~~eaie~GIk~I 143 (181)
....+.+.+..++..|=+.+
T Consensus 109 g~~~~~~~a~~~l~~~G~iv 128 (172)
T d1h2ba2 109 GSQATVDYTPYLLGRMGRLI 128 (172)
T ss_dssp CCHHHHHHGGGGEEEEEEEE
T ss_pred CcchHHHHHHHHHhCCCEEE
Confidence 98887777777776664433
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.27 Score=34.38 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=29.0
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 94 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~ 94 (181)
.+||.|+|+ |.+|++......+.|++++ ..||..+
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG~~v~-v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLGVEVI-AVDRYAD 45 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTTCEEE-EEESSTT
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCCCC
Confidence 468999998 9999999999999999976 4666653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=89.94 E-value=0.065 Score=39.93 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=55.0
Q ss_pred eccCCceEEEE-ccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE------cCc-cc--cc-----c----HHHHhh--
Q 030220 54 FVDKNTRVICQ-GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGL-PV--FN-----S----VAEAKA-- 112 (181)
Q Consensus 54 ~~~~~~rViVv-GatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei------~Gv-PV--y~-----s----l~e~~~-- 112 (181)
.+.+..+|+|+ |++|-.|+...+..+..|.++++.+.....-.+. .|. .+ |+ . +.+..+
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~ 104 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS 104 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc
Confidence 45666668887 7889999999999999999999877543311110 121 11 11 1 233221
Q ss_pred ccCCcEEEEeeChHHHHHHHHHHHHcCCCE
Q 030220 113 ETKANASVIYVPPPFAAAAIMEAMEAELDL 142 (181)
Q Consensus 113 ~~~~DVaIdfVPp~~a~~~~~eaie~GIk~ 142 (181)
...+|+++|++..+...+.++. +..+=+.
T Consensus 105 g~~vdvv~D~vg~~~~~~~~~~-l~~~G~~ 133 (189)
T d1gu7a2 105 GGEAKLALNCVGGKSSTGIARK-LNNNGLM 133 (189)
T ss_dssp TCCEEEEEESSCHHHHHHHHHT-SCTTCEE
T ss_pred cCCceEEEECCCcchhhhhhhh-hcCCcEE
Confidence 1258999999998887776644 4443333
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.92 E-value=0.031 Score=39.28 Aligned_cols=96 Identities=5% Similarity=-0.019 Sum_probs=55.3
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCe-EEcCccccc-c--HHHHhhc---cCCcEEEEeeChHHHHHHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFN-S--VAEAKAE---TKANASVIYVPPPFAAAAIM 133 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~-ei~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~~a~~~~~ 133 (181)
|+|+|+ |+.|+.+++.+.+++..++ ..||..... ...|++++. + -++.+++ .+++.+|.+++.+...-.+-
T Consensus 3 ivI~G~-g~~g~~l~~~L~~~~i~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~ 80 (129)
T d2fy8a1 3 VVICGW-SESTLECLRELRGSEVFVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCI 80 (129)
T ss_dssp EEEESC-CHHHHHHHHTSCGGGEEEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHH
T ss_pred EEEECC-CHHHHHHHHHHcCCCCEEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHHH
Confidence 789999 9999999998876654333 344443210 114665553 2 2333332 26899999988766555444
Q ss_pred HHHHc-C--CCEEEEeCCCCCHHHHHHHHHH
Q 030220 134 EAMEA-E--LDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 134 eaie~-G--Ik~IV~iTtG~~~ed~~~l~~~ 161 (181)
..++. . ++.++- + -.++....+..+
T Consensus 81 ~~~r~~~~~~~iia~-~--~~~~~~~~l~~~ 108 (129)
T d2fy8a1 81 LGIRKIDESVRIIAE-A--ERYENIEQLRMA 108 (129)
T ss_dssp HHHHHHCSSSCEEEE-C--SSGGGHHHHHHH
T ss_pred HHHHHHCCCceEEEE-E--cCHHHHHHHHHC
Confidence 44433 3 333333 3 455556666554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=89.87 E-value=0.2 Score=39.26 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=53.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCC---cEEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKA---NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~---DVaIdfVPp~~a~~~~~ea 135 (181)
+.++|.|++|-+|+.+++.+.+.|.+|+. ++.+.. +. -...+++.++... -+..|...++.+.+.++.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii-~~r~~~--~l-----~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVI-ASRKMD--VL-----KATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHH--HH-----HHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEE-EECCHH--HH-----HHHHHHHHHhcCCceEEEEecccChHHHHHHhhhh
Confidence 55788899999999999999999999773 343321 11 1122333322222 2345677888888888888
Q ss_pred HHc--CCCEEEEeC
Q 030220 136 MEA--ELDLVVCIT 147 (181)
Q Consensus 136 ie~--GIk~IV~iT 147 (181)
.+. ++..+|+.+
T Consensus 98 ~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 98 IKVAGHPNIVINNA 111 (294)
T ss_dssp HHHTCSCSEEEECC
T ss_pred hhhccccchhhhhh
Confidence 876 577777733
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=89.74 E-value=0.2 Score=39.45 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccC--C-cEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETK--A-NASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~--~-DVaIdfVPp~~a~~~~~e 134 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+. ++.+. + .++++.++.. + -+..|.+.++.+.+.+++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~i-~~r~~--~---------~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGAKVAV-LDKSA--E---------RLAELETDHGDNVLGIVGDVRSLEDQKQAASR 72 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCH--H---------HHHHHHHHHGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCH--H---------HHHHHHHHcCCCeeEEecccccHHHHHHHHHH
Confidence 456888899999999999999999999773 44332 1 1233332222 2 234567888999999999
Q ss_pred HHHc--CCCEEEEeCCCC
Q 030220 135 AMEA--ELDLVVCITEGI 150 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~ 150 (181)
+.+. ++..+|+ ..|+
T Consensus 73 ~~~~~g~idilvn-nAG~ 89 (276)
T d1bdba_ 73 CVARFGKIDTLIP-NAGI 89 (276)
T ss_dssp HHHHHSCCCEEEC-CCCC
T ss_pred HHHHhCCcccccc-cccc
Confidence 9877 6888877 5553
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.53 E-value=0.19 Score=39.05 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=59.8
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhh-ccCCc-EEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKA-ETKAN-ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~-~~~~D-VaIdfVPp~~a~~~~~eai 136 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . ..+.+.+. ..++. +..|.+.++.+.+.++++.
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~~~~--~------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVM-ITGRHSDV--G------EKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--H------HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHHH--H------HHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4577779999999999999999999966 33432210 0 11111111 11222 3457788999999999998
Q ss_pred Hc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 137 EA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 137 e~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
+. ++..+|+ ..|+ +.+|..++.+.
T Consensus 78 ~~~G~iDiLVn-nAg~~~~~~~~~~~~~~~~~~~~v 112 (251)
T d1zk4a1 78 KAFGPVSTLVN-NAGIAVNKSVEETTTAEWRKLLAV 112 (251)
T ss_dssp HHHSSCCEEEE-CCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHhCCceEEEe-ccccccccchhcccccchhhhccc
Confidence 86 6888887 4443 45555555443
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=1 Score=32.28 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=65.2
Q ss_pred CceEEEEccC-CCCcc---------hhhHHHHHhCCeEeeecCCCCCC--eE--EcC----ccccc-cHHHHhhccCCcE
Q 030220 58 NTRVICQGIT-GKNGT---------FHTEQAIEYGTKMVGGVTPKKGG--TE--HLG----LPVFN-SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGat-GkmG~---------~~~k~~~~~g~~IVagVdP~~~G--~e--i~G----vPVy~-sl~e~~~~~~~DV 118 (181)
..||+|+|.- =+.|+ -..+.+++.|++.| -||++..- .+ +.+ -|+.. ++.++++..+||.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~I-liN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~E~p~~ 82 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-MVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKG 82 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-EECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEE-EEecChhhhhcChhhcCceEEccCCHHHHHHHHHHhCCCE
Confidence 4679999983 23555 34456777899977 45544321 11 111 13333 5777777779999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 030220 119 SVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 119 aIdfVPp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l~ 159 (181)
++...--+.+...+.++-+.|++. + |-+.+.+.+-+
T Consensus 83 ii~~~GGQtalnla~~L~~~gv~i-L----Gt~~~~Id~aE 118 (121)
T d1a9xa4 83 VIVQYGGQTPLKLARALEAAGVPV-I----GTSPDAIDRAE 118 (121)
T ss_dssp EECSSSTHHHHTTHHHHHHTTCCB-C----SSCHHHHHHHH
T ss_pred EEeehhhhhHHHHHHHHHHcCCcE-E----CCCHHHHHHHH
Confidence 999999999999999999999984 3 45666665544
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.51 E-value=0.29 Score=37.92 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=59.8
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEAME 137 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~eaie 137 (181)
|+|.|+++.+|+.+++.+.+.|.+++......... . ..+.+.+++...+ +..|.+.++.+.++++++.+
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~--~------~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA--A------EEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAID 75 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH--H------HHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH--H------HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45559999999999999999999987432222211 1 1122222222222 44577889999999999998
Q ss_pred c--CCCEEEEeCCC---------CCHHHHHHHHHHh
Q 030220 138 A--ELDLVVCITEG---------IPQHDMVINFTRV 162 (181)
Q Consensus 138 ~--GIk~IV~iTtG---------~~~ed~~~l~~~a 162 (181)
. ++..+|+ ..| ++.+|..++.+.-
T Consensus 76 ~~g~iDiLVn-nAg~~~~~~~~~~~~~~~~~~~~vN 110 (244)
T d1edoa_ 76 AWGTIDVVVN-NAGITRDTLLIRMKKSQWDEVIDLN 110 (244)
T ss_dssp HSSCCSEEEE-CCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HcCCCCcccc-ccccccccchhccchHHHHHHHhhh
Confidence 6 6888887 444 3556665555543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.51 E-value=0.16 Score=38.76 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCC
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPK 92 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~ 92 (181)
-||+|.|+++-+|+++++.+.+.|.+|+. +.+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 47999999999999999999999999664 34443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.42 E-value=0.58 Score=33.76 Aligned_cols=98 Identities=7% Similarity=-0.055 Sum_probs=56.6
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC-----e-EeeecCCCCCCeE---------------EcCccccccHHHHhhccC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT-----K-MVGGVTPKKGGTE---------------HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~-----~-IVagVdP~~~G~e---------------i~GvPVy~sl~e~~~~~~ 115 (181)
+..||.|+||+|+.|+...-.+.+.+. + ....+|-...... ...+.+..+.++..+ +
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 79 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK--D 79 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT--T
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccC--C
Confidence 346899999999999966665554221 1 1224443221110 012344446677777 8
Q ss_pred CcEEEEeeC----------------hHHHHHHHHHHHHc-CCCEEEEeCCCCCHHHHHH
Q 030220 116 ANASVIYVP----------------PPFAAAAIMEAMEA-ELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 116 ~DVaIdfVP----------------p~~a~~~~~eaie~-GIk~IV~iTtG~~~ed~~~ 157 (181)
.|++|++.- .....+.++...+. +-..++++.++ |..-+..
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN-PvD~mt~ 137 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN-PANTNCL 137 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHH
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC-cHHHHHH
Confidence 999998763 25677777777774 66664433333 5544443
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.15 Score=40.51 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=59.3
Q ss_pred ceEEEE-ccCCCCcchhhHHHHHhCCeEee--ecCCCCCCeEEcCccccccHHHHhhc---cCCc---EEEEeeChHHHH
Q 030220 59 TRVICQ-GITGKNGTFHTEQAIEYGTKMVG--GVTPKKGGTEHLGLPVFNSVAEAKAE---TKAN---ASVIYVPPPFAA 129 (181)
Q Consensus 59 ~rViVv-GatGkmG~~~~k~~~~~g~~IVa--gVdP~~~G~ei~GvPVy~sl~e~~~~---~~~D---VaIdfVPp~~a~ 129 (181)
.||+|+ |+++-+|+.+++.+.+.|.+++. ....+... -..+++..++ ...+ +..|.+.++.+.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 73 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT--------QGRLWEAARALACPPGSLETLQLDVRDSKSVA 73 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG--------THHHHHHHHHTTCCTTSEEEEECCTTCHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh--------hHHHHHHHHHHhccCCceEEEeccccchHhhh
Confidence 467665 99999999999999998887442 11111100 0122222211 1122 456788899999
Q ss_pred HHHHHHHHcCCCEEEEeC--------CCCCHHHHHHHHHH
Q 030220 130 AAIMEAMEAELDLVVCIT--------EGIPQHDMVINFTR 161 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iT--------tG~~~ed~~~l~~~ 161 (181)
++++++.+.++..+++.+ +-++.++..++.+.
T Consensus 74 ~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~v 113 (285)
T d1jtva_ 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDV 113 (285)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred hhhhhccccchhhhhhcccccccccccchhHhhhhhhhhc
Confidence 999988887888888744 22456666665554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.20 E-value=1 Score=34.28 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=53.9
Q ss_pred CceEEEEccCC--CCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CC-cEEEEeeChHHHHHHHH
Q 030220 58 NTRVICQGITG--KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 58 ~~rViVvGatG--kmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~-DVaIdfVPp~~a~~~~~ 133 (181)
.++++|.|++| -+|+.+++.+.+.|.+|+. .+... + .....++..+.. ++ -+..|.+.++.+.+.++
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i-~~~~~---~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVAL-SYQAE---R-----LRPEAEKLAEALGGALLFRADVTQDEELDALFA 78 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEE-EESSG---G-----GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEE-EeCcH---H-----HHHHHHHhhhccCcccccccccCCHHHHHHHHH
Confidence 45688889987 4899999999999999763 33221 0 111122222211 22 24567888999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|+
T Consensus 79 ~~~~~~g~iDilVn-nag~ 96 (256)
T d1ulua_ 79 GVKEAFGGLDYLVH-AIAF 96 (256)
T ss_dssp HHHHHHSSEEEEEE-CCCC
T ss_pred HHHHhcCCceEEEe-cccc
Confidence 88876 5777777 5554
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.11 E-value=0.28 Score=38.18 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=54.4
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc----cCC-cEEEEeeChHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE----TKA-NASVIYVPPPFAAAAIM 133 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~----~~~-DVaIdfVPp~~a~~~~~ 133 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... .. . ..+++.+. .++ -+..|.+.++.+.+.++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~-~~~r~~~~--l~--~---~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 77 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVT-ITGRHAER--LE--E---TRQQILAAGVSEQNVNSVVADVTTDAGQDEILS 77 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--HH--H---HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECCHHH--HH--H---HHHHHHhcCCCcCceEEEEccCCCHHHHHHHHH
Confidence 4466669999999999999999999966 44433211 10 1 11222111 012 13457789999999999
Q ss_pred HHHHc--CCCEEEEeCCCC
Q 030220 134 EAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 134 eaie~--GIk~IV~iTtG~ 150 (181)
++.+. ++..+|+ ..|.
T Consensus 78 ~~~~~~g~iDilvn-nAG~ 95 (264)
T d1spxa_ 78 TTLGKFGKLDILVN-NAGA 95 (264)
T ss_dssp HHHHHHSCCCEEEE-CCC-
T ss_pred HHHHHhCCCCEeec-cccc
Confidence 99986 7888887 5554
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.09 Score=41.52 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=27.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG 88 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag 88 (181)
+||+|.|++|-.|+.+++.+++.|.+|++.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~ 31 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVV 31 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 689999999999999999999999998864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.98 E-value=0.18 Score=39.20 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=54.5
Q ss_pred eE-EEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 60 RV-ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 60 rV-iVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
|| +|.|+++-+|+.+++.+.+.|.+|+ ..+.+... . -...+++.+ ...+ +..|.+.++.+.+.++++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~-~~~r~~~~--l-----~~~~~~i~~-~g~~~~~~~~Dv~~~~~v~~~~~~~ 72 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVA-IADYNDAT--A-----KAVASEINQ-AGGHAVAVKVDVSDRDQVFAAVEQA 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--H-----HHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEE-EEECCHHH--H-----HHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 56 5669999999999999999999966 34433211 1 111222221 2222 346888999999999999
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 73 ~~~~g~iDilVn-nAG~ 88 (255)
T d1gega_ 73 RKTLGGFDVIVN-NAGV 88 (255)
T ss_dssp HHHTTCCCEEEE-CCCC
T ss_pred HHHhCCccEEEe-cccc
Confidence 986 6888887 4443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.83 E-value=0.038 Score=41.70 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=50.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC-CCCCC--eEE-cCccc-ccc-HHHHh---hccCCcEEEEeeChH
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG--TEH-LGLPV-FNS-VAEAK---AETKANASVIYVPPP 126 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd-P~~~G--~ei-~GvPV-y~s-l~e~~---~~~~~DVaIdfVPp~ 126 (181)
.+..+|+|.|++|-.|++.++.....|.++++... +++.. ++. ....+ |++ .++.. ....+|+++|.+..+
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR 109 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence 34466999999999999999999999999998654 34321 000 01122 222 22222 234799999999877
Q ss_pred HHHHHHHHH
Q 030220 127 FAAAAIMEA 135 (181)
Q Consensus 127 ~a~~~~~ea 135 (181)
...+.++.+
T Consensus 110 ~~~~~l~~l 118 (176)
T d1xa0a2 110 TLATVLSRM 118 (176)
T ss_dssp THHHHHHTE
T ss_pred hHHHHHHHh
Confidence 655555443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.80 E-value=0.65 Score=33.49 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=58.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCC----eEee--ecCCCCCCeE---------------EcCccccccHHHHhhccC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGT----KMVG--GVTPKKGGTE---------------HLGLPVFNSVAEAKAETK 115 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~----~IVa--gVdP~~~G~e---------------i~GvPVy~sl~e~~~~~~ 115 (181)
+..||.|+||+|+.|+...-.+...+. +.+. .++....... ..++.+..+..+..+ +
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--D 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcc--c
Confidence 446899999999999977776655321 1111 1222111100 124555566777777 8
Q ss_pred CcEEEEee----------------ChHHHHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHH
Q 030220 116 ANASVIYV----------------PPPFAAAAIMEAMEAE-LDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 116 ~DVaIdfV----------------Pp~~a~~~~~eaie~G-Ik~IV~iTtG~~~ed~~~l 158 (181)
.|++|++- +...+.+.++.+.+.. -..++++.+. |..-+..+
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN-PvDv~t~~ 139 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN-PANTNALI 139 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHHH
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC-cHHHHHHH
Confidence 99999986 2456667777777754 3454544444 66665554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.76 E-value=0.2 Score=38.89 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=58.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc---CCc-EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET---KAN-ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~---~~D-VaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+. ++.+... .-...+++.+.. ++. +..|.+.++.+.+++++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i-~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVAL-VDWNLEA-------GVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRK 75 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH-------HHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHHH-------HHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHH
Confidence 34677799999999999999999999663 3332210 001112222211 111 34577889999999999
Q ss_pred HHHc--CCCEEEEeCCCCC-HHHHHHHH
Q 030220 135 AMEA--ELDLVVCITEGIP-QHDMVINF 159 (181)
Q Consensus 135 aie~--GIk~IV~iTtG~~-~ed~~~l~ 159 (181)
+.+. ++..+|+ ..|+. .++.++..
T Consensus 76 ~~~~~G~iDilVn-nAg~~~~~~~~~~~ 102 (254)
T d2gdza1 76 VVDHFGRLDILVN-NAGVNNEKNWEKTL 102 (254)
T ss_dssp HHHHHSCCCEEEE-CCCCCCSSSHHHHH
T ss_pred HHHHcCCcCeecc-cccccccccchhee
Confidence 9876 6888888 55544 44444433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.71 E-value=0.089 Score=38.32 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=44.4
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-cccc--cHHHHhh--ccCCcEEEEeeCh
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVFN--SVAEAKA--ETKANASVIYVPP 125 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy~--sl~e~~~--~~~~DVaIdfVPp 125 (181)
.+++..+|+|+|+ |-+|....+..+..|.++++ ++.+....+. .|. .+++ +..+..+ ...+|++++++..
T Consensus 24 ~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~-~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 24 GCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYV-ISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEE-EESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CcCCCCEEEEECC-CCcchhHHHHhhhccccccc-cccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 5677889999998 99999999988888999775 4433221111 121 2222 2112221 1268999998764
Q ss_pred H
Q 030220 126 P 126 (181)
Q Consensus 126 ~ 126 (181)
.
T Consensus 102 ~ 102 (168)
T d1piwa2 102 L 102 (168)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.69 E-value=0.2 Score=39.14 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=54.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCc---EEEEeeChHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN---ASVIYVPPPFAAAAIME 134 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D---VaIdfVPp~~a~~~~~e 134 (181)
+.++|.|+++-+|+.+++.+.+.|.+|+ ..+.+... . -...+++.+. .+.+ +..|.+.++.+.+.+++
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~-i~~r~~~~--l-----~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLS-LVDVSSEG--L-----EASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCHHH--H-----HHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCHHH--H-----HHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHH
Confidence 4577889999999999999999999966 33332211 1 1112222221 1223 33477899999999999
Q ss_pred HHHc--CCCEEEEeCCC
Q 030220 135 AMEA--ELDLVVCITEG 149 (181)
Q Consensus 135 aie~--GIk~IV~iTtG 149 (181)
+.+. ++..+|+ ..|
T Consensus 77 ~~~~~G~iDiLVn-nAG 92 (258)
T d1iy8a_ 77 TTERFGRIDGFFN-NAG 92 (258)
T ss_dssp HHHHHSCCSEEEE-CCC
T ss_pred HHHHhCCCCEEEE-CCc
Confidence 9986 6888887 444
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.68 E-value=0.31 Score=37.92 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=58.8
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCcEE---EEee-ChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANAS---VIYV-PPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~DVa---IdfV-Pp~~a~~~~ 132 (181)
.+.|+|.|+++-+|..+++.+.+.|.+++...+..... + .+++.... .+..+. .|.+ +.+.+.+++
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~-~--------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-T--------ALAELKAINPKVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-H--------HHHHHHHHCTTSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH-H--------HHHHHHhhCCCCCEEEEEeecCCCHHHHHHHH
Confidence 45688889999999999999999999866443332211 1 12222211 122332 2333 445688888
Q ss_pred HHHHHc--CCCEEEEeCCCCCHHHHHHHHH
Q 030220 133 MEAMEA--ELDLVVCITEGIPQHDMVINFT 160 (181)
Q Consensus 133 ~eaie~--GIk~IV~iTtG~~~ed~~~l~~ 160 (181)
+++.+. +|..+|+-+....+++.+++.+
T Consensus 76 ~~~~~~~g~iDilvnnAG~~~~~~~~~~~~ 105 (254)
T d1sbya1 76 KKIFDQLKTVDILINGAGILDDHQIERTIA 105 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCTTCHHHHHH
T ss_pred HHHHHHcCCCCEEEeCCCCCCHHHHHHHHH
Confidence 888874 6888888566666666665544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.63 E-value=0.4 Score=34.00 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=55.6
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeee-cCCCCCCe---E--EcCccccc-c--HHHHhhc---cCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT---E--HLGLPVFN-S--VAEAKAE---TKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVag-VdP~~~G~---e--i~GvPVy~-s--l~e~~~~---~~~DVaIdfVPp~ 126 (181)
..|+|+|+ |+.|+.+++.+.+.|.+++.. .||..... + -.|++++. + -.+++++ .++|++|..++.+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence 45999999 999999999999988886642 33432110 0 13555443 2 1222222 2689999998765
Q ss_pred HHHHHH-HHHHHc-CCCEEEEeCCCCCHHHHHHHHHH
Q 030220 127 FAAAAI-MEAMEA-ELDLVVCITEGIPQHDMVINFTR 161 (181)
Q Consensus 127 ~a~~~~-~eaie~-GIk~IV~iTtG~~~ed~~~l~~~ 161 (181)
..--.+ ..+-+. +...|++-+ ...++...++++
T Consensus 83 ~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~ 117 (153)
T d1id1a_ 83 ADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIKMV 117 (153)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHHHHC
Confidence 543333 333343 332344423 334444444443
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=88.52 E-value=0.11 Score=41.12 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=28.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
..+|+|+|+ |+.|+...+.+.+.|.+||+.-|
T Consensus 31 g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 31 GKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence 478999999 99999999999999999997544
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.09 E-value=0.2 Score=38.35 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+.++++|.|+++-+|+.+++.+.+.|.+|+.
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~ 33 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTI 33 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3567889999999999999999999999763
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.88 E-value=0.51 Score=33.93 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=61.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeee----------c--------CCCCCCeEEcCccccc-cHHHHhhccCCcE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG----------V--------TPKKGGTEHLGLPVFN-SVAEAKAETKANA 118 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVag----------V--------dP~~~G~ei~GvPVy~-sl~e~~~~~~~DV 118 (181)
-.||+|++.+|-.|-..+..+.+.|+++... + ||-..+.. ..-..|. .++.+.+..++|.
T Consensus 3 G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~-~~~~~~~~~l~~~~~d~~vd~ 81 (163)
T d2csua3 3 GNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIAS-ARGEDYYRTAKLLLQDPNVDM 81 (163)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTT-CCHHHHHHHHHHHHHSTTCSE
T ss_pred CCeEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCC-CCHHHHHHHHHHHHcCCCcCE
Confidence 3689999999999999999998899887531 1 11111100 0112333 3665666567886
Q ss_pred EEE-eeCh--------HHHHHHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHHHhhhhch
Q 030220 119 SVI-YVPP--------PFAAAAIMEAMEAE--LDLVVCITEGIPQHDMVINFTRVNILLV 167 (181)
Q Consensus 119 aId-fVPp--------~~a~~~~~eaie~G--Ik~IV~iTtG~~~ed~~~l~~~ak~ipv 167 (181)
++. +.++ +.+...++.+.+.+ .+.++++..|...++..++.+.+ -||+
T Consensus 82 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~~l~~~-Gip~ 140 (163)
T d2csua3 82 LIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKN-GIPT 140 (163)
T ss_dssp EEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTT-TCCE
T ss_pred EEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHHHHHHC-CCCc
Confidence 543 3322 34555555555543 44555555665556655554443 3665
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.48 E-value=0.36 Score=34.95 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=53.1
Q ss_pred cCCceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCC---Ce--EE--------cCccccccHHHHhhccCCcEEE
Q 030220 56 DKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH--------LGLPVFNSVAEAKAETKANASV 120 (181)
Q Consensus 56 ~~~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~---G~--ei--------~GvPVy~sl~e~~~~~~~DVaI 120 (181)
+...||.|+|+ |+.|+..+-.+...+. +++ .+|.... |. ++ ..+.++..-.+..+ ++|++|
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~--daDvvv 79 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR--DADLVV 79 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT--TCSEEE
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeeccccccchhccHhhCccccCCCeEEEECCHHHhc--cceeEE
Confidence 34568999998 9999977776666543 444 5554321 10 11 12333332223344 789998
Q ss_pred EeeC----------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 121 IYVP----------------PPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 121 dfVP----------------p~~a~~~~~eaie~GIk~IV~iTt 148 (181)
++.- .+.+.+.++...+++.+.++++-+
T Consensus 80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 7543 344566677777888777666543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.44 E-value=0.33 Score=34.68 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=51.7
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc-ccc--c--c-HHHHhhc-cCCcEEEEee
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL-PVF--N--S-VAEAKAE-TKANASVIYV 123 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv-PVy--~--s-l~e~~~~-~~~DVaIdfV 123 (181)
.+++..+|+|+|+ |-.|....+..+..|.++++ +++.....+. .|. .++ . + .+++.+. .+.|..|+++
T Consensus 24 ~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~-~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 24 NARPGQWVAISGI-GGLGHVAVQYARAMGLHVAA-IDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCCCEEEEeec-cccHHHHHHHHHHcCCccce-ecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 4677788999998 99999999988888988774 4433211111 121 122 1 2 2333221 2567777887
Q ss_pred ChHHHHHHHHHHHHcC
Q 030220 124 PPPFAAAAIMEAMEAE 139 (181)
Q Consensus 124 Pp~~a~~~~~eaie~G 139 (181)
......+.+.+++..|
T Consensus 102 ~~~~~~~~~~~~l~~~ 117 (166)
T d1llua2 102 VSNSAFGQAIGMARRG 117 (166)
T ss_dssp SCHHHHHHHHTTEEEE
T ss_pred ccchHHHHHHHHhcCC
Confidence 7776666666666655
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.17 Score=39.56 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=55.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-C-CcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-K-ANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~-~DVaIdfVPp~~a~~~~~ea 135 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+. .+.+.. .++++.++. + .=+..|.+.++.+.++++++
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i-~~r~~~-----------~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVI-CDKDES-----------GGRALEQELPGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EESCHH-----------HHHHHHHHCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EECCHH-----------HHHHHHHhcCCCeEEEccCCCHHHHHHHHHHH
Confidence 356888899999999999999999999763 343210 122222211 1 12445778899999999999
Q ss_pred HHc--CCCEEEEeCCC
Q 030220 136 MEA--ELDLVVCITEG 149 (181)
Q Consensus 136 ie~--GIk~IV~iTtG 149 (181)
.+. ++..+|+ ..|
T Consensus 74 ~~~~g~iDilVn-nAG 88 (250)
T d1ydea1 74 IRRFGRLDCVVN-NAG 88 (250)
T ss_dssp HHHHSCCCEEEE-CCC
T ss_pred HHhcCCCCEEEe-ccc
Confidence 886 6888888 444
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.93 E-value=0.56 Score=40.76 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=58.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCC----------------eE-----------E-cCcc---cccc
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----------------TE-----------H-LGLP---VFNS 106 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G----------------~e-----------i-~GvP---Vy~s 106 (181)
+.+|+|+|+ |-.|..+++++.-.|..-+-.+|..... +. + ..+. +-.+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 368999999 8899999999988887644445543322 10 0 1222 2224
Q ss_pred HHHHhhc-----cCCcEEEEeeChHHHHH-HHHHHHHcCCCEEEEeCCCC
Q 030220 107 VAEAKAE-----TKANASVIYVPPPFAAA-AIMEAMEAELDLVVCITEGI 150 (181)
Q Consensus 107 l~e~~~~-----~~~DVaIdfVPp~~a~~-~~~eaie~GIk~IV~iTtG~ 150 (181)
+.+..+. .++|++|++..+..... .-+.|.+++|+.|.+-+.|+
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~ 153 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL 153 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 5443221 15899998876665544 56667788999987756554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.82 E-value=0.26 Score=38.66 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=53.9
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc----CC-cEEEEeeChHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET----KA-NASVIYVPPPFAAAAI 132 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~----~~-DVaIdfVPp~~a~~~~ 132 (181)
.+.++|.|+++-+|+.+++.+.+.|.+|+ .++.+... . -...+++.+.. ++ -+..|.+.++.+.+++
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~~~~--l-----~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVT-ITGRNEDR--L-----EETKQQILKAGVPAEKINAVVADVTEASGQDDII 75 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEESCHHH--H-----HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCHHH--H-----HHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHH
Confidence 35578889999999999999999999976 34433211 1 11122222110 11 2445778899999999
Q ss_pred HHHHHc--CCCEEEE
Q 030220 133 MEAMEA--ELDLVVC 145 (181)
Q Consensus 133 ~eaie~--GIk~IV~ 145 (181)
+++.+. ++..+|+
T Consensus 76 ~~~~~~~G~iDilVn 90 (274)
T d1xhla_ 76 NTTLAKFGKIDILVN 90 (274)
T ss_dssp HHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCceEEEe
Confidence 999976 6888887
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=0.4 Score=35.32 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 92 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~ 92 (181)
+..+|+|+|+ |-.|+.++..+.+.|.+-+..+|..
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~ 51 (182)
T d1vi2a1 17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRR 51 (182)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccc
Confidence 3468999999 9999999988988888755566644
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.69 E-value=0.074 Score=40.37 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeE-eeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~I-VagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
++|+|+|. |+.|+-+++.+...|.++ |..+||.+.=+ ...|+.+- +++++.. ..|+.+-++....+. -.+-+
T Consensus 25 k~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~--~adivvtaTGn~~vI--~~eh~ 98 (163)
T d1li4a1 25 KVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQ--EGNIFVTTTGCIDII--LGRHF 98 (163)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTT--TCSEEEECSSCSCSB--CHHHH
T ss_pred CEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhh--hccEEEecCCCccch--hHHHH
Confidence 45999999 999999999999999994 44688754211 12466665 5778777 789888887654432 22223
Q ss_pred H-cCCCEEEEeCCCCCHH-HHHHHHHHh
Q 030220 137 E-AELDLVVCITEGIPQH-DMVINFTRV 162 (181)
Q Consensus 137 e-~GIk~IV~iTtG~~~e-d~~~l~~~a 162 (181)
+ ..=..|++-..+|..| |+..|++.+
T Consensus 99 ~~MKdgaIL~N~Ghfd~EId~~~L~~~~ 126 (163)
T d1li4a1 99 EQMKDDAIVCNIGHFDVEIDVKWLNENA 126 (163)
T ss_dssp TTCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred HhccCCeEEEEeccccceecHHHHhhcc
Confidence 2 3445677767888766 677777765
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=86.41 E-value=1.9 Score=30.75 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=52.1
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecC--CCCCCeEE----cCcc------ccccHHHHhhccCCcEEEEee-
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVT--PKKGGTEH----LGLP------VFNSVAEAKAETKANASVIYV- 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVd--P~~~G~ei----~GvP------Vy~sl~e~~~~~~~DVaIdfV- 123 (181)
.||.|+|+ |+.|+...-.+...+. +++ .+| +.+...+. +..+ ++..-.+..+ ++|++|++.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~--~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELV-LIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK--DCDVIVVTAG 77 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT--TCSEEEECCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhC--CCceEEEecc
Confidence 47999998 9999977766666543 444 444 44322111 1222 2222122233 789999983
Q ss_pred -Ch--------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030220 124 -PP--------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 124 -Pp--------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~ 157 (181)
|. ..+.+.++.+.+.+.+.++++.|. |..-+..
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN-Pvdv~t~ 125 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN-PVDIITY 125 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS-SHHHHHH
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC-hHHHHHH
Confidence 22 234466777778888887665555 5544443
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.28 E-value=0.44 Score=36.74 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.7
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEee
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVG 87 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVa 87 (181)
+.++|.|+++.+|+.+++.+.+.|.+|+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~ 35 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIA 35 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence 45777899999999999999999999774
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.12 E-value=0.18 Score=41.41 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=28.4
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
..+|+|+|+ |+.|+..++.+.+.|.+||+.-|
T Consensus 36 gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 36 DKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 467999999 99999999999999999997543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=85.83 E-value=0.19 Score=38.76 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=50.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~ea 135 (181)
..+|+|+|+ |+.|+...+.+.+.|.+++. .+|+..... .-.|.++. +.+++.. .+||+.+-+--....-+ +.+
T Consensus 27 gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~-~~~DI~iPcA~~~~I~~--~~a 101 (201)
T d1c1da1 27 GLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLS-TPCDVFAPCAMGGVITT--EVA 101 (201)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGG-CCCSEEEECSCSCCBCH--HHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Ccccccc-ccceeeecccccccccH--HHH
Confidence 367999999 99999999999999999763 343322110 01233333 3456654 47898774432222111 122
Q ss_pred HHcCCCEEEEeCCC
Q 030220 136 MEAELDLVVCITEG 149 (181)
Q Consensus 136 ie~GIk~IV~iTtG 149 (181)
-.-+.+.|+. ..+
T Consensus 102 ~~i~ak~i~e-~AN 114 (201)
T d1c1da1 102 RTLDCSVVAG-AAN 114 (201)
T ss_dssp HHCCCSEECC-SCT
T ss_pred hhhhhheeec-cCC
Confidence 2336777776 444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.79 E-value=0.27 Score=35.82 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=56.4
Q ss_pred ceEEEEccCCCCcchhhHHHH-Hh--CCeEeeecC--CCCCCe--EE------cCccccc--cHHHHhhccCCcEEEEee
Q 030220 59 TRVICQGITGKNGTFHTEQAI-EY--GTKMVGGVT--PKKGGT--EH------LGLPVFN--SVAEAKAETKANASVIYV 123 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~-~~--g~~IVagVd--P~~~G~--ei------~GvPVy~--sl~e~~~~~~~DVaIdfV 123 (181)
+||.|+|++|+.|+..+-.+. +. .-+++ -+| +...|. ++ ...+.+. +..+..+ +.|++|++.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~-L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~--~aDvvvita 77 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELS-LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALE--GADVVLISA 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEE-EECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHT--TCSEEEECC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEE-EecccccchhHHHHHHCCccccCCcEEEcCCCccccC--CCCEEEECC
Confidence 589999988999996665443 32 34444 444 433221 11 1112221 2233344 789999986
Q ss_pred ----------------ChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHH
Q 030220 124 ----------------PPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVIN 158 (181)
Q Consensus 124 ----------------Pp~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~l 158 (181)
+.+.+.+.++.+.+.+.+.++++.+. |..-+..+
T Consensus 78 G~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN-PvD~m~~~ 127 (145)
T d2cmda1 78 GVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN-PVNTTVAI 127 (145)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS-SHHHHHHH
T ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC-CchHHHHH
Confidence 34566777888888888887765544 55544433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=85.75 E-value=0.32 Score=36.17 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=52.5
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCC---Ce--EE-c-----Ccccc---ccHHHHhhccCCcEEEE
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-L-----GLPVF---NSVAEAKAETKANASVI 121 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~---G~--ei-~-----GvPVy---~sl~e~~~~~~~DVaId 121 (181)
+.||.|+|+ |+.|+.+.-.+...|+ |++ .+|.... |+ ++ + +.+.. .+.++ .+ +.|++|+
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~Elv-LiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~-~~--~adiVVi 94 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSLADELA-LVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV-TA--NSKIVVV 94 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-GT--TCSEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEeccchhHHHHHHHhccccccCCCeEEeccchhh-cc--cccEEEE
Confidence 468999998 9999987777777655 444 5664321 11 11 1 11221 13333 23 6899988
Q ss_pred eeC----------------hHHHHHHHHHHHHcCCCEEEEeCC
Q 030220 122 YVP----------------PPFAAAAIMEAMEAELDLVVCITE 148 (181)
Q Consensus 122 fVP----------------p~~a~~~~~eaie~GIk~IV~iTt 148 (181)
+.- ...+.+.+....+.+.+.++++.+
T Consensus 95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 542 235566677778888888776554
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.70 E-value=0.13 Score=34.07 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=31.0
Q ss_pred ccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecC
Q 030220 55 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 90 (181)
Q Consensus 55 ~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVd 90 (181)
.++..+|+|.|++|-.|+...+..+..|+++++-..
T Consensus 29 ~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~ 64 (77)
T d1o8ca2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG 64 (77)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC
Confidence 456788999999999999999998889999887543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.40 E-value=0.16 Score=38.03 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=56.7
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeE-----E----------------------cCccccccHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H----------------------LGLPVFNSVAEA 110 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~e-----i----------------------~GvPVy~sl~e~ 110 (181)
-.||+|+|+ |.||+-++..+...|++++ .+|+.....+ + ..+..-.+.++
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 80 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPIL-MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD- 80 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-
Confidence 367999999 9999999988888899977 4444321100 0 01222223332
Q ss_pred hhccCCcEEEEeeChHHHHHH-HHHHHHcCCC--EE-EEeCCCCCHHHHHH
Q 030220 111 KAETKANASVIYVPPPFAAAA-IMEAMEAELD--LV-VCITEGIPQHDMVI 157 (181)
Q Consensus 111 ~~~~~~DVaIdfVPp~~a~~~-~~eaie~GIk--~I-V~iTtG~~~ed~~~ 157 (181)
+. ++|+++-.+|.+...+- +..-++.-++ .| ..-|.+++..++..
T Consensus 81 ~~--~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~ 129 (186)
T d1wdka3 81 FG--NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK 129 (186)
T ss_dssp GG--GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG
T ss_pred cc--ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH
Confidence 23 68999999998755443 2333444333 22 23367888766544
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.08 E-value=0.72 Score=31.65 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=47.0
Q ss_pred ceEEEEccCCCCcc---------hhhHHHHHhCCeEeeecCCCCCCeEE-cCccccccHHHHhhccCCcEEEEeeChH
Q 030220 59 TRVICQGITGKNGT---------FHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNSVAEAKAETKANASVIYVPPP 126 (181)
Q Consensus 59 ~rViVvGatGkmG~---------~~~k~~~~~g~~IVagVdP~~~G~ei-~GvPVy~sl~e~~~~~~~DVaIdfVPp~ 126 (181)
.+|.|.|.+=|.|. .+++.+.+.|.++. ..||.....+. .+..+..+++++.+ +.|++|......
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~-iyDP~v~~~~~~~~~~~~~~l~~~~~--~sDiII~~~~~~ 90 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKII-IYEPMLNKLESEDQSVLVNDLENFKK--QANIIVTNRYDN 90 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEE-EECTTCSCCCTTCCSEECCCHHHHHH--HCSEEECSSCCG
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhcccccee-eecCCcChhHhccCCEEEeCHHHHHh--hCCEEEEcCCch
Confidence 47999999977776 46666777899977 57887644222 35778889999988 689777655443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.02 E-value=0.3 Score=37.73 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=53.2
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CC-cEEEEeeChHHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~-DVaIdfVPp~~a~~~~~ea 135 (181)
.++++|.|+++-+|+.+++.+.+.|.+|+. ++... . .++++.++. ++ -+.+|.+.++.+.+++++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~~-~~r~~--~---------~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVVA-VTRTN--S---------DLVSLAKECPGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEE-EESCH--H---------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCH--H---------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc
Confidence 356788899999999999999999999773 34322 1 122222211 12 2344556666665554432
Q ss_pred HHcCCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 136 MEAELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 136 ie~GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
.++..+|+ ..|+ +.++..++.+.
T Consensus 73 --g~iDilVn-nAg~~~~~~~~~~~~~~~~~~~~v 104 (242)
T d1cyda_ 73 --GPVDLLVN-NAALVIMQPFLEVTKEAFDRSFSV 104 (242)
T ss_dssp --CCCSEEEE-CCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred --CCCeEEEE-CCccccchhHHHHHHHHHHHHHHH
Confidence 36777777 4443 55555555443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.79 E-value=0.17 Score=39.28 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhcc-CC-cEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAET-KA-NASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~-~~-DVaIdfVPp~~a~~~~~eai 136 (181)
++++|.|+++-+|+.+++.+.+.|.+|+ .++.+.. .++++.++. ++ -+.+|.+.++.+.+++++.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~-~~~r~~~-----------~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~- 74 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVV-AVSRTQA-----------DLDSLVRECPGIEPVCVDLGDWEATERALGSV- 74 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESCHH-----------HHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC-
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECCHH-----------HHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh-
Confidence 5688889999999999999999999976 3444321 122222221 12 2445666666655544332
Q ss_pred HcCCCEEEEeCCC---------CCHHHHHHHHHHh
Q 030220 137 EAELDLVVCITEG---------IPQHDMVINFTRV 162 (181)
Q Consensus 137 e~GIk~IV~iTtG---------~~~ed~~~l~~~a 162 (181)
.++..+|+ ..| ++.+|..+..+.-
T Consensus 75 -g~iDilVn-nAg~~~~~~~~~~~~~~~~~~~~vn 107 (244)
T d1pr9a_ 75 -GPVDLLVN-NAAVALLQPFLEVTKEAFDRSFEVN 107 (244)
T ss_dssp -CCCCEEEE-CCCCCCCBCGGGCCHHHHHHHHHHH
T ss_pred -CCceEEEe-ccccccccchhhhhHHHHHHHHHHh
Confidence 26777777 433 3455555555443
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=2.2 Score=30.58 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCceEEEEccC-CCCcc---------hhhHHHHHhCCeEeeecCCCCCC--eE--EcC----ccccc-cHHHHhhccCCc
Q 030220 57 KNTRVICQGIT-GKNGT---------FHTEQAIEYGTKMVGGVTPKKGG--TE--HLG----LPVFN-SVAEAKAETKAN 117 (181)
Q Consensus 57 ~~~rViVvGat-GkmG~---------~~~k~~~~~g~~IVagVdP~~~G--~e--i~G----vPVy~-sl~e~~~~~~~D 117 (181)
...||+|+|.- =+.|+ -..+.+++.|++.+ -||++..- .+ ..+ -|+.- ++.++++..+||
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~i-liN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~pd 84 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-NVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPD 84 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-EECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEE-EecCchHhhhcChhhcceeeeecCCHHHHHHHHHHhCcC
Confidence 34789999983 23455 34556777899976 56655422 11 111 13333 588888888999
Q ss_pred EEEEeeChHHHHHHHHHHHHcCC
Q 030220 118 ASVIYVPPPFAAAAIMEAMEAEL 140 (181)
Q Consensus 118 VaIdfVPp~~a~~~~~eaie~GI 140 (181)
.++...--+.+.+.+.++.++|+
T Consensus 85 ~il~~~GGQtalnla~~L~~~gi 107 (127)
T d1a9xa3 85 AVLPTMGGQTALNCALELERQGV 107 (127)
T ss_dssp EEECSSSHHHHHHHHHHHHHTTH
T ss_pred CeEEEeeeehHhHHHHHHHHcCc
Confidence 99999999999999999987763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.66 E-value=0.41 Score=35.91 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=43.5
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE---cCc---------cccccHHHHhhccCCcEEEE
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL---------PVFNSVAEAKAETKANASVI 121 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei---~Gv---------PVy~sl~e~~~~~~~DVaId 121 (181)
.+.+..+|+|+|+ |-.|...+......|...|..+|+...-.+. .|. +....+.+......+|++++
T Consensus 22 ~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 22 GVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 5677888999998 9999988888877777544445543311111 111 11112333333446899999
Q ss_pred eeCh
Q 030220 122 YVPP 125 (181)
Q Consensus 122 fVPp 125 (181)
++-.
T Consensus 101 ~vG~ 104 (195)
T d1kola2 101 AVGF 104 (195)
T ss_dssp CCCT
T ss_pred Cccc
Confidence 9863
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=84.35 E-value=0.24 Score=39.13 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=52.1
Q ss_pred CceEEEEccCCCCcchhhHHHHHhCCeEee-ecCCCCCCe--EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT--EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIME 134 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~~g~~IVa-gVdP~~~G~--ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~e 134 (181)
..+|+|+|+ |+.|+..++.+.+.|.++|+ ++|+..... ...|..++ +.+++.+ .+|||.+-+--.....+- .
T Consensus 39 g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~-~~cDIl~PcA~~~~I~~~--~ 113 (230)
T d1leha1 39 GLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYG-VTCDIFAPCALGAVLNDF--T 113 (230)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTT-CCCSEEEECSCSCCBSTT--H
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCccccc-ccccEecccccccccChH--H
Confidence 468999999 99999999999999999774 233322110 01222222 3345443 478988766433322211 1
Q ss_pred HHHcCCCEEEEeC-CCCC
Q 030220 135 AMEAELDLVVCIT-EGIP 151 (181)
Q Consensus 135 aie~GIk~IV~iT-tG~~ 151 (181)
+-+-..+.|+.-+ -+++
T Consensus 114 ~~~l~ak~Ive~ANn~~t 131 (230)
T d1leha1 114 IPQLKAKVIAGSADNQLK 131 (230)
T ss_dssp HHHCCCSEECCSCSCCBS
T ss_pred hhccCccEEEecccCCCC
Confidence 2233677777744 4454
|
| >d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.26 E-value=0.59 Score=37.43 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHhhhhchhchhh
Q 030220 130 AAIMEAMEAELDLVVCITEGIPQHDMVINFTRVNILLVAFLNF 172 (181)
Q Consensus 130 ~~~~eaie~GIk~IV~iTtG~~~ed~~~l~~~ak~ipv~~~~~ 172 (181)
++++++-+.++..+|++-.==+++-...-.+.|-+-.+||-|-
T Consensus 116 dvv~~Lk~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aFVN~ 158 (243)
T d1gr0a1 116 DVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNA 158 (243)
T ss_dssp CHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHHHHHHHcCceEEec
Confidence 4555555666666666544334454555555555555666553
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.61 E-value=0.56 Score=36.14 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=53.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEA 135 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~ea 135 (181)
+.|+|.|+++-.|+.+++.+.+.|.+++...+..... . +.+.+.+++...+ +-.|++.++.+.+.++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~--~------~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA--A------EEVVAELKKLGAQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--H------HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHH--H------HHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHH
Confidence 3577789999999999999999999987443332211 1 1112222222333 345677888999999988
Q ss_pred HHc--CCCEEEEeCCCC
Q 030220 136 MEA--ELDLVVCITEGI 150 (181)
Q Consensus 136 ie~--GIk~IV~iTtG~ 150 (181)
.+. ++..+|+ ..|+
T Consensus 79 ~~~~g~idilin-nag~ 94 (259)
T d1ja9a_ 79 VSHFGGLDFVMS-NSGM 94 (259)
T ss_dssp HHHHSCEEEEEC-CCCC
T ss_pred HHHcCCCcEEEe-cccc
Confidence 876 4666665 5443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=83.38 E-value=0.15 Score=38.74 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=68.5
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCe-EeeecCCCCCCe-EEcCccccccHHHHhhccCCcEEEEeeChHHHHHHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~-IVagVdP~~~G~-ei~GvPVy~sl~e~~~~~~~DVaIdfVPp~~a~~~~~eai 136 (181)
++++|+|+ |.-|+-+++.+...|.+ +|.-+||-+.=+ -.+|+.| .+++|+.+ ..|+.|-.+....+... +..-
T Consensus 24 k~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~--~aDi~vTaTGn~~vI~~-~h~~ 98 (163)
T d1v8ba1 24 KIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVD--KGDFFITCTGNVDVIKL-EHLL 98 (163)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTT--TCSEEEECCSSSSSBCH-HHHT
T ss_pred CEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccc--cCcEEEEcCCCCccccH-HHHH
Confidence 56999999 99999999999999998 555688855211 1368888 47788887 78999999887653221 1111
Q ss_pred HcCCCEEEEeCCCCCHH-HHHHHHHH
Q 030220 137 EAELDLVVCITEGIPQH-DMVINFTR 161 (181)
Q Consensus 137 e~GIk~IV~iTtG~~~e-d~~~l~~~ 161 (181)
..+=..|++-..||..| |+..|++.
T Consensus 99 ~MKdgaIl~N~GHfd~EIdv~~L~~~ 124 (163)
T d1v8ba1 99 KMKNNAVVGNIGHFDDEIQVNELFNY 124 (163)
T ss_dssp TCCTTCEEEECSSTTTSBCHHHHHTS
T ss_pred HhhCCeEEEeccccchhhhhHHHHhC
Confidence 22334577778999765 45555543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=83.25 E-value=1.4 Score=33.67 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=58.6
Q ss_pred EEEEccCCCCcchhhHHHHHhCCeE------eeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHH
Q 030220 61 VICQGITGKNGTFHTEQAIEYGTKM------VGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAA 131 (181)
Q Consensus 61 ViVvGatGkmG~~~~k~~~~~g~~I------VagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~ 131 (181)
|+|.|+++-+|+.+++.+.+.|.++ |...+.+... +. ...+++ ++...+ +..|.+.++.+.+.
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~--l~-----~~~~~~-~~~g~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD--LE-----KISLEC-RAEGALTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH--HH-----HHHHHH-HTTTCEEEEEECCTTSHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH--HH-----HHHHHH-HhcCCcEEEEEecCCCHHHHHHH
Confidence 4566999999999999999988872 3333433211 10 011222 212222 34578889999999
Q ss_pred HHHHHHc--CCCEEEEeCCCC---------CHHHHHHHHHH
Q 030220 132 IMEAMEA--ELDLVVCITEGI---------PQHDMVINFTR 161 (181)
Q Consensus 132 ~~eaie~--GIk~IV~iTtG~---------~~ed~~~l~~~ 161 (181)
++++.+. ++..+|+ ..|+ +.+|..++.+.
T Consensus 76 ~~~~~~~~g~iDilvn-nAg~~~~~~~~~~~~~~~~~~~~v 115 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVN-NAGVGRFGALSDLTEEDFDYTMNT 115 (240)
T ss_dssp HHHHHHHTSCCSEEEE-CCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHcCCcceeec-ccccccCCccccCCHHHHhhcCCE
Confidence 9999886 6888887 5553 56666655544
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=83.15 E-value=0.45 Score=36.37 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=51.7
Q ss_pred eEEEE-ccCCCCcchhhHHHHHhCCeEeeecCCCCCC-eE----E------cCccccccHHHHhh--ccCCcEEEEeeCh
Q 030220 60 RVICQ-GITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----H------LGLPVFNSVAEAKA--ETKANASVIYVPP 125 (181)
Q Consensus 60 rViVv-GatGkmG~~~~k~~~~~g~~IVagVdP~~~G-~e----i------~GvPVy~sl~e~~~--~~~~DVaIdfVPp 125 (181)
.|+|+ |+++.+|+.+++.+.+.|.+|+......... ++ + ..+.+..+...... -.-.+...|.+..
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 36655 9999999999999999999987432221100 00 0 00111111111100 0012344567778
Q ss_pred HHHHHHHHHHHHc--CCCEEEEeCCCC
Q 030220 126 PFAAAAIMEAMEA--ELDLVVCITEGI 150 (181)
Q Consensus 126 ~~a~~~~~eaie~--GIk~IV~iTtG~ 150 (181)
+.+.+.++++.+. ++..+|+ ..|+
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVn-nAG~ 108 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVN-NASS 108 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEe-cCCc
Confidence 8899999998876 6888888 5554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=82.71 E-value=2.6 Score=31.19 Aligned_cols=103 Identities=9% Similarity=-0.026 Sum_probs=58.6
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHh---CCe---EeeecCCCCCCe-------E--------EcCccccccHHHHhh
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEY---GTK---MVGGVTPKKGGT-------E--------HLGLPVFNSVAEAKA 112 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~---g~~---IVagVdP~~~G~-------e--------i~GvPVy~sl~e~~~ 112 (181)
-..+..||.|+||+|..|+..+-.+.+- |.. .+-.+|-..... + ...+.+.++..+..+
T Consensus 20 ~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~ 99 (175)
T d7mdha1 20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE 99 (175)
T ss_dssp -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred ccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhcc
Confidence 4455678999999999999666655542 221 111334211110 0 123455556777777
Q ss_pred ccCCcEEEEeeC----------------hHHHHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHH
Q 030220 113 ETKANASVIYVP----------------PPFAAAAIMEAMEAEL-DLVVCITEGIPQHDMVINF 159 (181)
Q Consensus 113 ~~~~DVaIdfVP----------------p~~a~~~~~eaie~GI-k~IV~iTtG~~~ed~~~l~ 159 (181)
+.|++|++-- ..-+.+.++.+.+..- ..+|.+.+. |+.-+..+.
T Consensus 100 --~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N-Pvd~~t~ia 160 (175)
T d7mdha1 100 --DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN-PCNTNALIC 160 (175)
T ss_dssp --TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SHHHHHHHH
T ss_pred --CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC-cHHHHHHHH
Confidence 8999998861 3446666666667543 343433444 766555543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=82.63 E-value=2.9 Score=29.33 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=55.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC--eEeeecCCCCCC--eE---E--------cCccccc-cHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGG--TE---H--------LGLPVFN-SVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~--~IVagVdP~~~G--~e---i--------~GvPVy~-sl~e~~~~~~~DVaIdf 122 (181)
+||.|+|+ |+.|+.....+...+. +++ .+|....- .+ + ....+.. +-.+..+ ++|++|++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~--dadvvvit 76 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTA--NSDIVIIT 76 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT--TCSEEEEC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEE-EeccccccchhhhhhhhcccchhcccceEEecCCHHHhc--CCeEEEEE
Confidence 58999998 9999987776666553 444 55543321 11 1 0122221 2233334 78999988
Q ss_pred eC----------------hHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030220 123 VP----------------PPFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 123 VP----------------p~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~ 157 (181)
.- .+...+.++.+.+.+.+.++++.|. |..-+..
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN-Pvd~~~~ 126 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN-PLDIMTH 126 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS-SHHHHHH
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC-ChHHHHH
Confidence 52 2335677778888888887765554 5554444
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.28 E-value=0.88 Score=34.93 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=48.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhc-cCCcEEEEeeChHHHHHHHHHHHHc
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAE-TKANASVIYVPPPFAAAAIMEAMEA 138 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~-~~~DVaIdfVPp~~a~~~~~eaie~ 138 (181)
.++|-|+++-+|+.+++.+.+.|.+|+. .+..... . +.+++.... ..+| .+..+.+.++++++.+.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i-~~r~~~~--~------~~~~~~~~~~~~~d----v~~~~~~~~~~~~~~~~ 68 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVAC-HDESFKQ--K------DELEAFAETYPQLK----PMSEQEPAELIEAVTSA 68 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEE-CCGGGGS--H------HHHHHHHHHCTTSE----ECCCCSHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHH--H------HHHHhhhCcEEEec----cCCHHHHHHHHHHHHHH
Confidence 3788899999999999999999999763 3432211 1 112222221 1344 45677788888888876
Q ss_pred --CCCEEEE
Q 030220 139 --ELDLVVC 145 (181)
Q Consensus 139 --GIk~IV~ 145 (181)
++..+|+
T Consensus 69 ~G~iDiLVn 77 (252)
T d1zmta1 69 YGQVDVLVS 77 (252)
T ss_dssp HSCCCEEEE
T ss_pred cCCCCEEEE
Confidence 6888876
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=81.41 E-value=0.72 Score=35.03 Aligned_cols=90 Identities=14% Similarity=-0.031 Sum_probs=53.8
Q ss_pred eccCCceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCcEE---EEeeChHHHHH
Q 030220 54 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANAS---VIYVPPPFAAA 130 (181)
Q Consensus 54 ~~~~~~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~DVa---IdfVPp~~a~~ 130 (181)
+|+|+..++|.|++|-+|+.+++.+.+.|.+.|..+...... .. ..-..++++. ...+++. .|.+.++.+.+
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~--~~--~~~~~~~~l~-~~g~~v~~~~~Dv~d~~~~~~ 79 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD--AD--GAGELVAELE-ALGARTTVAACDVTDRESVRE 79 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG--ST--THHHHHHHHH-HTTCEEEEEECCTTCHHHHHH
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccC--HH--HHHHHHHHHH-hccccccccccccchHHHHHH
Confidence 688988899999999999999999999998633344332100 00 0111233332 2234433 35666777777
Q ss_pred HHHHHHHcC-CCEEEEeCCC
Q 030220 131 AIMEAMEAE-LDLVVCITEG 149 (181)
Q Consensus 131 ~~~eaie~G-Ik~IV~iTtG 149 (181)
+.+++.+.+ +..|++ ..|
T Consensus 80 ~~~~i~~~~~i~~vv~-~ag 98 (259)
T d2fr1a1 80 LLGGIGDDVPLSAVFH-AAA 98 (259)
T ss_dssp HHHTSCTTSCEEEEEE-CCC
T ss_pred hhcccccccccccccc-ccc
Confidence 776655443 555666 444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=81.26 E-value=1.9 Score=30.59 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=55.0
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCC-eEeeecCCCCCC--eE---E-c-----C--cccc--ccHHHHhhccCCcEEEEe
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG--TE---H-L-----G--LPVF--NSVAEAKAETKANASVIY 122 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~-~IVagVdP~~~G--~e---i-~-----G--vPVy--~sl~e~~~~~~~DVaIdf 122 (181)
.||.|+|+ |+.|....-.+...++ +++ .+|....- .+ + + + ..|. ++.+++ + +.|++|++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~-~--~advvvit 76 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT-A--NSDVIVVT 76 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG-T--TCSEEEEC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEeeccccchhHHHHhhccccccCCCCEEEecCcHHHh-c--CCCEEEEe
Confidence 58999998 9999966665555554 544 56654421 11 1 1 1 1122 234443 3 68999998
Q ss_pred eCh----------------HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Q 030220 123 VPP----------------PFAAAAIMEAMEAELDLVVCITEGIPQHDMVI 157 (181)
Q Consensus 123 VPp----------------~~a~~~~~eaie~GIk~IV~iTtG~~~ed~~~ 157 (181)
... +.+.+.++...+.+.+.++++.|. |..-+..
T Consensus 77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN-PvDv~t~ 126 (142)
T d1uxja1 77 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN-PLDAMTY 126 (142)
T ss_dssp CSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS-SHHHHHH
T ss_pred eeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC-chHHHHH
Confidence 732 233567777778788887776553 4444333
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.06 E-value=2.2 Score=32.18 Aligned_cols=82 Identities=6% Similarity=0.071 Sum_probs=52.3
Q ss_pred CceEEEEccCCCCcchhhHHHHH---hCCeEee-ecCCCCCCeEEcCccccccHHHHhhc-cCCc-EEEEeeChHHHHHH
Q 030220 58 NTRVICQGITGKNGTFHTEQAIE---YGTKMVG-GVTPKKGGTEHLGLPVFNSVAEAKAE-TKAN-ASVIYVPPPFAAAA 131 (181)
Q Consensus 58 ~~rViVvGatGkmG~~~~k~~~~---~g~~IVa-gVdP~~~G~ei~GvPVy~sl~e~~~~-~~~D-VaIdfVPp~~a~~~ 131 (181)
|++|+|.|+++-+|+.+++.+.+ .|.+|+. +-++.+. + .+++..+. .++. +.+|.+.++.+.++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~-~---------~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 71 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA-K---------ELEDLAKNHSNIHILEIDLRNFDAYDKL 71 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC-H---------HHHHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-H---------HHHHHHhcCCcEEEEEEEeccHHHHHHH
Confidence 46799999999999999998875 4788664 2333321 1 23333322 1222 44577788888888
Q ss_pred HHHH--HH--cCCCEEEEeCCCC
Q 030220 132 IMEA--ME--AELDLVVCITEGI 150 (181)
Q Consensus 132 ~~ea--ie--~GIk~IV~iTtG~ 150 (181)
+++. .. .++..+|+ -.|+
T Consensus 72 ~~~i~~~~~~~~iDiLvn-NAg~ 93 (248)
T d1snya_ 72 VADIEGVTKDQGLNVLFN-NAGI 93 (248)
T ss_dssp HHHHHHHHGGGCCSEEEE-CCCC
T ss_pred HhhhHHHhhcCCcceEEe-eccc
Confidence 8865 22 35888887 4443
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=80.97 E-value=0.67 Score=38.35 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=45.8
Q ss_pred ceEEEEccCCCCcchhhHHHHH-hCCeEeeecCCCCCCe--------EEcCccc--cccHHHHhhccCCcEEEEeeC
Q 030220 59 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT--------EHLGLPV--FNSVAEAKAETKANASVIYVP 124 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~-~g~~IVagVdP~~~G~--------ei~GvPV--y~sl~e~~~~~~~DVaIdfVP 124 (181)
.++.|+|+ |.+++.+.+.+.. .+++-|-..++..... +..|+++ .++++++++ ++|+++.+++
T Consensus 129 ~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~--~ADIi~t~Ta 202 (340)
T d1x7da_ 129 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVK--GVDIITTVTA 202 (340)
T ss_dssp CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHT--TCSEEEECCC
T ss_pred ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHh--cCCceeeccc
Confidence 67999999 9999999998877 5887554444432110 1236655 669999998 8999998774
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.57 E-value=0.43 Score=37.43 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=27.4
Q ss_pred CCceEEEEccCCCCcchhhHHHH-HhCCeEeeecC
Q 030220 57 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVT 90 (181)
Q Consensus 57 ~~~rViVvGatGkmG~~~~k~~~-~~g~~IVagVd 90 (181)
+..+|+|+|+ |+.|+..++.+. +.|.++|+..|
T Consensus 30 ~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 30 KKATVAVQGF-GNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeec
Confidence 3578999999 999999999886 46999997544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.42 E-value=0.85 Score=35.25 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=53.5
Q ss_pred eEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEEcCccccccHHHHhhccCCc---EEEEeeChHHHHHHHHHHH
Q 030220 60 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKAN---ASVIYVPPPFAAAAIMEAM 136 (181)
Q Consensus 60 rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei~GvPVy~sl~e~~~~~~~D---VaIdfVPp~~a~~~~~eai 136 (181)
.++|.|+++-+|+.+++.+.+.|.+|+. ++.+... .. ...+++.+ ...+ +..|.+.++.+.+.++++.
T Consensus 9 v~lITGas~GIG~~ia~~la~~G~~V~l-~~r~~~~--l~-----~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLKSKLVL-WDINKHG--LE-----ETAAKCKG-LGAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEE-EESCHHH--HH-----HHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEE-EECCHHH--HH-----HHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 3666699999999999999999999663 4443311 10 11222221 1222 4567888999999999998
Q ss_pred Hc-C-CCEEEEeCCCCC
Q 030220 137 EA-E-LDLVVCITEGIP 151 (181)
Q Consensus 137 e~-G-Ik~IV~iTtG~~ 151 (181)
+. | +..+|+ ..|+.
T Consensus 80 ~~~g~idilin-nag~~ 95 (244)
T d1yb1a_ 80 AEIGDVSILVN-NAGVV 95 (244)
T ss_dssp HHTCCCSEEEE-CCCCC
T ss_pred HHcCCCceeEe-ecccc
Confidence 65 4 677776 54443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=0.06 Score=40.47 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=48.9
Q ss_pred ceEEEEccCCCCcchhhHHHHHhCCeEeeecCCCCCCeEE--cC---cccccc--HHHHhhccCCcEEEEeeChHHHHHH
Q 030220 59 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LG---LPVFNS--VAEAKAETKANASVIYVPPPFAAAA 131 (181)
Q Consensus 59 ~rViVvGatGkmG~~~~k~~~~~g~~IVagVdP~~~G~ei--~G---vPVy~s--l~e~~~~~~~DVaIdfVPp~~a~~~ 131 (181)
..|+|.|++|-.|+..++..+..|.++++-+.....-... .| +--|++ ..+.+.....|.++|+|-.+...+.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~~~~~ 112 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKV 112 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHHHHHHH
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchHHHHHH
Confidence 3699999999999999999999999988765432211111 11 112222 1222233457999999987765555
Q ss_pred HHHH
Q 030220 132 IMEA 135 (181)
Q Consensus 132 ~~ea 135 (181)
++.+
T Consensus 113 l~~l 116 (177)
T d1o89a2 113 LAQM 116 (177)
T ss_dssp HHTE
T ss_pred HHHh
Confidence 4443
|