Citrus Sinensis ID: 030245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIYYYVGVSKDF
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEEEEEEEEEccccccccccHHHHHHcccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEccHHHHHHHHHcccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEEEccccccHHccc
Coil and Loop (DISEMBL)
MANPKVFFdmtvggqpaGRIVMELFADVTPRTAENFRALCtgekgigksgkplhykgssfhrvipgfmcqggdftagngtggesiygskfadenfvkkhtgpgilsmanagpgtngsqffisagktewldgkhvAFGQVVEGMNVVKAIEKmgsrsgrtkkpvviadCGIYYYVGVSKDF
Flexible Loop (DISEMBL)
MANPKVFFdmtvggqpaGRIVMELFADVTPRTAENFRALCtgekgigksgkpLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIekmgsrsgrtkkpvviadCGIYYYVGVSKDF
Low Complexity Region (SEG)
MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQggdftagngtggESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIYYYVGVSKDF
Disordered region (IsUnstruct)
*****VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKM******TKKPVVIADCGIYYYVGV****
Disordered Region (DISOPRED)
*ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKA*EK******RT**PVVIADCGIYYY*******
Disordered Region (DISEMBL)
MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIYYYVGVSKDF
Disordered Region (DISPRO)
*ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIYYYVG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIYYYVGVSKDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q8W171	172	Peptidyl-prolyl cis-trans	no	no	0.938	0.982	0.887	2e-85
Q39613	172	Peptidyl-prolyl cis-trans	N/A	no	0.938	0.982	0.875	1e-84
P21568	171	Peptidyl-prolyl cis-trans	N/A	no	0.938	0.988	0.852	6e-83
O49886	172	Peptidyl-prolyl cis-trans	N/A	no	0.938	0.982	0.822	2e-81
Q38900	173	Peptidyl-prolyl cis-trans	yes	no	0.933	0.971	0.851	3e-81
P34790	172	Peptidyl-prolyl cis-trans	no	no	0.938	0.982	0.816	3e-78
Q9SKQ0	174	Peptidyl-prolyl cis-trans	no	no	0.933	0.965	0.809	7e-78
P24525	171	Peptidyl-prolyl cis-trans	N/A	no	0.938	0.988	0.816	2e-77
Q42406	172	Peptidyl-prolyl cis-trans	no	no	0.938	0.982	0.786	8e-76
P21569	172	Peptidyl-prolyl cis-trans	N/A	no	0.938	0.982	0.792	9e-76

>sp|Q8W171|CYP1_SOYBN Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max GN=Cyp1 PE=2 SV=1

 Score =  314 bits (804), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/169 (88%), Positives = 159/169 (94%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NPKVFFDMT+GGQ AGRIVMEL+ADVTPRTAENFRALCTGEKG+G+SGKPLHYKGSSF
Sbjct: 1   MPNPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFTAGNGTGGESIYG+KFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FGQV+EG+NVVK IEK+GS SGRT KPVVIA+CG
Sbjct: 121 ICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKPVVIANCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Glycine max (taxid: 3847)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1

 Score =  311 bits (797), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/169 (87%), Positives = 156/169 (92%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP+VFFDM+VGGQPAGRIVMELFAD TPRTAENFRALCTGEKG G+SGKPLHYK SSF
Sbjct: 1   MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYG+KFADENF+KKHTGPGILSMANAGP TNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT K VV+ DCG
Sbjct: 121 ICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Catharanthus roseus (taxid: 4058)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21568|CYPH_SOLLC Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1

 Score =  306 bits (783), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 144/169 (85%), Positives = 155/169 (91%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANPKVFFD+T+GG PAGR+VMELFAD TP+TAENFRALCTGEKG+GK GKPLHYKGS+F
Sbjct: 1   MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYG+KF DENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWL+GKHV FGQVVEGM+V+K  E +GS SGR  KPVVIADCG
Sbjct: 121 ICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Solanum lycopersicum (taxid: 4081)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O49886|CYPH_LUPLU Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1

 Score =  301 bits (771), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 154/169 (91%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+NPKVFFDM + G PAGRIVMEL+AD TPRTAENFRALCTGEKG+G+SGKPLHYKGS+F
Sbjct: 1   MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFTAGNGTG ESIYG+KFADENF+K+HTGPGILSMANAG GTNGSQFF
Sbjct: 61  HRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V+EGMNVV+ IEK+GS SG+T +PV IADCG
Sbjct: 121 ICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Lupinus luteus (taxid: 3873)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38900|CP19A_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1

 Score =  300 bits (769), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/168 (85%), Positives = 151/168 (89%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
            NPKV+FDMTVGG+ AGRIVMEL+AD TP TAENFRALCTGE+GIGK GKPLHYKGSSFH
Sbjct: 3   TNPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIP FMCQGGDFTAGNGTGGESIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFFI
Sbjct: 63  RVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              KT WLDGKHV FGQVVEG+NVV+ IEK+GS SGRT KPVVIADCG
Sbjct: 123 CTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCG 170

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1

 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 151/169 (89%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MA PKV+FDMT+ GQPAGRIVMEL+ D TPRTAENFRALCTGEKG+G +GKPLH+KGS F
Sbjct: 1   MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFTAGNGTGGESIYGSKF DENF +KHTGPGILSMANAG  TNGSQFF
Sbjct: 61  HRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT+WLDGKHV FGQVVEG++VVKAIEK+GS SG+  KPVV+ADCG
Sbjct: 121 ICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Triggers the activation of bacterial AvrRpt2 protease activity upon infection by P.syringae. Activated AvrRpt2 confers virulence in plant lacking the RPS2 resistance gene. In plants expressing RPS2, the AvrRpt2-mediated degradation of RIN4 activates RPS2, which induces hypersensitive response (HR) and plant resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1

 Score =  289 bits (740), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 152/168 (90%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           ++PKVFFDMT+GG PAG+IVMEL+ D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSFH
Sbjct: 3   SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIP FMCQGGDFT GNGTGGESIYG+KF DENF +KHTGPGILSMANAG  TNGSQFFI
Sbjct: 63  RVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              KT+WLDGKHV FGQVVEG++VVKAIEK+GS SG+  KPVVIADCG
Sbjct: 123 CTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCG 170

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24525|CYPH_BRANA Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2

 Score =  288 bits (736), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 146/169 (86%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NPKV+FDMTVG + AGRIVMEL+AD  P TAENFRALCTGE+GIGKSGKPLHYKGS+F
Sbjct: 1   MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFTAGNGTGGESIYG KF DENFVKKHTGPGILSM NAG  TNGSQFF
Sbjct: 61  HRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT WLDGKHV FGQVVEGM+VV+ IEK+GS SGRT K VV  DCG
Sbjct: 121 ICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Brassica napus (taxid: 3708)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q42406|CP18D_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1

 Score =  282 bits (721), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 147/169 (86%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+NP+VFFDM++ G P GRI MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS F
Sbjct: 1   MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTA NGTGGESIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT WLDGKHV FGQVV+G++VVKAIEK+GS SG+T K V I DCG
Sbjct: 121 ICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21569|CYPH_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1

 Score =  282 bits (721), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 147/169 (86%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANP+VFFDMTVGG PAGRIVMEL+A+  P+TAENFRALCTGEKG+GKSGKPLHYKGS+F
Sbjct: 1   MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFT GNGTGGESIYG KF DE FV+K   PG+LSMANAGP TNGSQFF
Sbjct: 61  HRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I    T WLDGKHV FGQVVEGM+VVKAIEK+G+R+G T K V +ADCG
Sbjct: 121 ICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCG 169

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
260401128	172	cyclophilin [Citrus sinensis]	0.938	0.982	0.940	5e-88
119367479	172	putative cyclophilin [Citrus hybrid cult	0.938	0.982	0.934	2e-87
194321208	173	cyclophilin [Gossypium hirsutum]	0.933	0.971	0.904	5e-86
317159551	172	cyclophilin [Hevea brasiliensis]	0.938	0.982	0.899	2e-85
343481065	172	cyclophilin [Momordica charantia]	0.938	0.982	0.887	4e-85
167599641	172	cyclophilin [Hevea brasiliensis]	0.938	0.982	0.899	5e-85
255538956	173	cyclophilin, putative [Ricinus communis]	0.933	0.971	0.898	7e-85
118489052	172	unknown [Populus trichocarpa x Populus d	0.938	0.982	0.893	9e-85
118489187	172	unknown [Populus trichocarpa x Populus d	0.938	0.982	0.881	1e-84
254047060	173	cydophilin [Gossypium hirsutum]	0.933	0.971	0.892	2e-84

>gi|260401128|gb|ACX37092.1| cyclophilin [Citrus sinensis]

 Score =  328 bits (841), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 159/169 (94%), Positives = 162/169 (95%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF
Sbjct: 1   MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT KPVVIADCG
Sbjct: 121 VCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 169

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119367479|gb|ABL67655.1| putative cyclophilin [Citrus hybrid cultivar]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/169 (93%), Positives = 162/169 (95%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NPKVFFDMTVGGQPAGRIVMELFA+VTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF
Sbjct: 1   MPNPKVFFDMTVGGQPAGRIVMELFAEVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT KPVVIADCG
Sbjct: 121 VCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 169

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194321208|gb|ACF48822.1| cyclophilin [Gossypium hirsutum]

 Score =  322 bits (824), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 152/168 (90%), Positives = 160/168 (95%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NPKVFFDMT+GGQPAGRIVMELFAD TPRTAENFRALCTGEKG+G+SGKPLHYKGSSFH
Sbjct: 3   SNPKVFFDMTIGGQPAGRIVMELFADCTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIP FMCQGGDFTAGNGTGGESIYGSKFADENF+KKHTGPGILSMANAGPGTNGSQFFI
Sbjct: 63  RVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT KPVV+ADCG
Sbjct: 123 CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTSKPVVVADCG 170

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317159551|gb|ADV04050.1| cyclophilin [Hevea brasiliensis]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/169 (89%), Positives = 160/169 (94%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANPKVFFDM+VGG PAG+IVMEL+ADV PRTAENFRALCTGEKGIGKSGKPLHYKGSSF
Sbjct: 1   MANPKVFFDMSVGGHPAGKIVMELYADVVPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYG+KFADENF KKHTGPG+LSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFTKKHTGPGVLSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT KPVVIADCG
Sbjct: 121 VCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTSKPVVIADCG 169

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343481065|gb|AEM44784.1| cyclophilin [Momordica charantia]

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/169 (88%), Positives = 161/169 (95%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANPKVFFDMT+GGQPAGRIVMEL+A+V PRTAENFRALCTGEKG G+SGKPLHYKGSSF
Sbjct: 1   MANPKVFFDMTIGGQPAGRIVMELYANVVPRTAENFRALCTGEKGNGRSGKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYG+KFADENFVKKHTGPG+LSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGVLSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FGQ+V+GM+VVKA+EK+GS SGRT KPVVIADCG
Sbjct: 121 ICTAKTEWLDGKHVVFGQIVDGMDVVKAVEKVGSSSGRTSKPVVIADCG 169

Source: Momordica charantia

Species: Momordica charantia

Genus: Momordica

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167599641|gb|ABZ88806.1| cyclophilin [Hevea brasiliensis]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/169 (89%), Positives = 159/169 (94%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANPKVFFDMT+GG PAGRIVMELFAD TPRTAENFRALCTGEKGIG+S KPLHYKGSSF
Sbjct: 1   MANPKVFFDMTIGGAPAGRIVMELFADTTPRTAENFRALCTGEKGIGRSRKPLHYKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYG+KFADENF+KKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+VVEGM+VVK IEK+GS SGRT KPVVIADCG
Sbjct: 121 ICTAKTEWLDGKHVVFGRVVEGMDVVKTIEKVGSSSGRTSKPVVIADCG 169

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538956|ref|XP_002510543.1| cyclophilin, putative [Ricinus communis] gi|18076088|emb|CAC80550.1| cyclophilin [Ricinus communis] gi|223551244|gb|EEF52730.1| cyclophilin, putative [Ricinus communis]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/168 (89%), Positives = 159/168 (94%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           ANPKVFFDMTVGG PAGRIVMELFAD TPRTAENFRALCTGEKG+G+SGKPLHYKGSSFH
Sbjct: 3   ANPKVFFDMTVGGAPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIPGFMCQGGDFTAGNGTGGESIYG+KFADENF+KKHTGPGILSMANAGPGTNGSQFFI
Sbjct: 63  RVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPGTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              KTEWLDGKHV FG+VVEGM++VKAIEK+GS SGRT KPV IADCG
Sbjct: 123 CTAKTEWLDGKHVVFGRVVEGMDIVKAIEKVGSSSGRTSKPVQIADCG 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489052|gb|ABK96333.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  317 bits (813), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 151/169 (89%), Positives = 161/169 (95%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+NPKVFFDMTVGGQPAGRIVMELFAD+ PRTAENFRALCTGEKG+GKSGKPLH+KGSSF
Sbjct: 1   MSNPKVFFDMTVGGQPAGRIVMELFADIVPRTAENFRALCTGEKGVGKSGKPLHFKGSSF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDFTAGNGTGGESIYG+KFADENFVKKHTGPG+LSMANAGPGTNGSQFF
Sbjct: 61  HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGVLSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FGQVVEGM+VVKAIEK+GS +GRT KPVV+ADCG
Sbjct: 121 ICTVKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSGNGRTSKPVVVADCG 169

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489187|gb|ABK96400.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  317 bits (811), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/169 (88%), Positives = 160/169 (94%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MANP+V+FDMT+GGQPAGRIVMELFAD TPRTAENFRALCTGEKG G+SGKPLHYKGS+F
Sbjct: 1   MANPRVYFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGKGRSGKPLHYKGSTF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENF+KKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FG+VVEG++VVKAIEK GS +GRT KPVVIADCG
Sbjct: 121 VCTAKTEWLDGKHVVFGRVVEGLDVVKAIEKFGSSNGRTSKPVVIADCG 169

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254047060|gb|ACT63839.1| cydophilin [Gossypium hirsutum]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/168 (89%), Positives = 158/168 (94%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NPKVFFDMT+GGQPAGRIVME FAD TPRTAENFRALCTGEKG+G+SGKPLHYK SSFH
Sbjct: 3   SNPKVFFDMTIGGQPAGRIVMEPFADCTPRTAENFRALCTGEKGVGRSGKPLHYKSSSFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIP FMCQGGDFTAGNGTGGESIYGSKFADENF+KKHTGPGILSMANAGPGTNGSQFFI
Sbjct: 63  RVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              KTEWLDGKHV FGQVVEGM+VVKAIEK+GS SGRT KPVV+ADCG
Sbjct: 123 CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTSKPVVVADCG 170

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2045076	173	ROC3 "rotamase CYP 3" [Arabido	0.927	0.965	0.784	1e-68
TAIR|locus:2047097	174	AT2G21130 [Arabidopsis thalian	0.933	0.965	0.744	8.2e-67
TAIR|locus:2141747	172	ROC1 "rotamase CYP 1" [Arabido	0.938	0.982	0.745	1.3e-66
TAIR|locus:2116880	172	ROC5 "rotamase cyclophilin 5"	0.938	0.982	0.721	1.1e-64
TAIR|locus:2078451	176	ROC2 "rotamase cyclophilin 2"	0.938	0.960	0.710	1.8e-62
WB|WBGene00000879	173	cyn-3 [Caenorhabditis elegans	0.938	0.976	0.674	1.9e-60
UNIPROTKB|P52011	173	cyn-3 "Peptidyl-prolyl cis-tra	0.938	0.976	0.674	1.9e-60
WB|WBGene00000883	171	cyn-7 [Caenorhabditis elegans	0.938	0.988	0.650	1.3e-59
DICTYBASE|DDB_G0282359	179	ppiA "cyclophilin-type peptidy	0.927	0.932	0.688	2.2e-59
WB|WBGene00000877	192	cyn-1 [Caenorhabditis elegans	0.922	0.864	0.674	6.6e-58

TAIR|locus:2045076 ROC3 "rotamase CYP 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 131/167 (78%), Positives = 139/167 (83%)

Query:     3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             NPKV+FDMTVGG+ AGRIVMEL+AD TP TAENFRALCTGE+GIGK GKPLHYKGSSFHR
Sbjct:     4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHR 63

Query:    63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
             VIP FMCQ            ESIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFFI 
Sbjct:    64 VIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFIC 123

Query:   123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
               KT WLDGKHV FGQVVEG+NVV+ IEK+GS SGRT KPVVIADCG
Sbjct:   124 TEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCG 170

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 125/168 (74%), Positives = 141/168 (83%)

Query:     2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
             ++PKVFFDMT+GG PAG+IVMEL+ D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSFH
Sbjct:     3 SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFH 62

Query:    62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
             RVIP FMCQ            ESIYG+KF DENF +KHTGPGILSMANAG  TNGSQFFI
Sbjct:    63 RVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFI 122

Query:   122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
                KT+WLDGKHV FGQVVEG++VVKAIEK+GS SG+  KPVVIADCG
Sbjct:   123 CTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCG 170

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2141747 ROC1 "rotamase CYP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 126/169 (74%), Positives = 139/169 (82%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             MA PKV+FDMT+ GQPAGRIVMEL+ D TPRTAENFRALCTGEKG+G +GKPLH+KGS F
Sbjct:     1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HRVIP FMCQ            ESIYGSKF DENF +KHTGPGILSMANAG  TNGSQFF
Sbjct:    61 HRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             I   KT+WLDGKHV FGQVVEG++VVKAIEK+GS SG+  KPVV+ADCG
Sbjct:   121 ICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCG 169

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009585 "red, far-red light phototransduction" evidence=IGI

GO:0009704 "de-etiolation" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009785 "blue light signaling pathway" evidence=IGI

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2116880 ROC5 "rotamase cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 122/169 (72%), Positives = 136/169 (80%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             M+NP+VFFDM++ G P GRI MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS F
Sbjct:     1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF
Sbjct:    61 HRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             I   KT WLDGKHV FGQVV+G++VVKAIEK+GS SG+T K V I DCG
Sbjct:   121 ICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCG 169

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2078451 ROC2 "rotamase cyclophilin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 120/169 (71%), Positives = 132/169 (78%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             MANPKVFFD+ +G   AGR+VMELFADVTPRTA NFRALCTGE GIGK+GK LHYKGS+F
Sbjct:     1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF
Sbjct:    61 HRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             I   KT WLDGKHV FG+VV+G NVVKA+E +GS  G   + VVI DCG
Sbjct:   121 ICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCG 169

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0016018 "cyclosporin A binding" evidence=ISS

WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 114/169 (67%), Positives = 133/169 (78%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             M+  KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct:     1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HR+IP FM Q            ESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct:    61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             +   KTEWLDGKHV FG+VVEG++VVKA+E  GS+SG+  K  +IADCG
Sbjct:   121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005623 "cell" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 114/169 (67%), Positives = 133/169 (78%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             M+  KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct:     1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HR+IP FM Q            ESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct:    61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             +   KTEWLDGKHV FG+VVEG++VVKA+E  GS+SG+  K  +IADCG
Sbjct:   121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 110/169 (65%), Positives = 130/169 (76%)

Query:     1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             M+ P+VFFD+T+ G+P GRIVMEL+ D+ P+TAENFRALCTGEKG+GKSGKPLH+KGS F
Sbjct:     1 MSRPRVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKF 60

Query:    61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
             HR+IP FM Q            ESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct:    61 HRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             +   KT WLDGKHV FG+VVEG+++V  +E  GS SG  K   +IADCG
Sbjct:   121 LCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCG 169

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

DICTYBASE|DDB_G0282359 ppiA "cyclophilin-type peptidylprolyl cis-trans isomerase (PPIase)" [Dictyostelium discoideum (taxid:44689)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 115/167 (68%), Positives = 130/167 (77%)

Query:     3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             NP+VFFD+T+GG  AG++VMEL+A+  P+TAENFRALCTGEKGIGKSGKPL YKGSSFHR
Sbjct:    11 NPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHR 70

Query:    63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
             VI  FMCQ            ESIYG+KFADENF  KH G G LSMANAG  TNGSQFFI 
Sbjct:    71 VITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFIC 130

Query:   123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
                T+WLDGKHV FG V EGM+VVK +E  GS+SG+T KPVVIA+CG
Sbjct:   131 VAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCG 177

GO:0030587 "sorocarp development" evidence=IMP

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00000877 cyn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 112/166 (67%), Positives = 125/166 (75%)

Query:     4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
             PKVFFD+++G +PAGR+ MELF DV P+TAENFRALCTGEKG+G+ G  LH+KGS FHR+
Sbjct:    22 PKVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRI 81

Query:    64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
             IP FM Q            ESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFFI  
Sbjct:    82 IPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICT 141

Query:   124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
               T WLDG HV FGQV +GM+VVK IEKMGSRSG   K V IADCG
Sbjct:   142 VDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCG 187

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17742	PPIA_MOUSE	5, ., 2, ., 1, ., 8	0.7041	0.9	0.9878	yes	no
Q39613	CYPH_CATRO	5, ., 2, ., 1, ., 8	0.8757	0.9388	0.9825	N/A	no
Q0ZQK3	PPIA_SAGOE	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9878	N/A	no
P52009	CYP1_CAEEL	5, ., 2, ., 1, ., 8	0.7349	0.9222	0.8645	no	no
P14851	PPIA_CRIGR	5, ., 2, ., 1, ., 8	0.7041	0.9	0.9878	yes	no
P0C1I7	CYP5_RHIO9	5, ., 2, ., 1, ., 8	0.6867	0.9222	0.9431	N/A	no
P54985	PPIA_BLAGE	5, ., 2, ., 1, ., 8	0.7041	0.9	0.9878	N/A	no
P62938	PPIA_CHLAE	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
P62936	PPIA_PIG	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9878	yes	no
P62937	PPIA_HUMAN	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	yes	no
P62935	PPIA_BOVIN	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9878	yes	no
P34790	CP18C_ARATH	5, ., 2, ., 1, ., 8	0.8165	0.9388	0.9825	no	no
Q38867	CP19C_ARATH	5, ., 2, ., 1, ., 8	0.7751	0.9388	0.9602	no	no
O49886	CYPH_LUPLU	5, ., 2, ., 1, ., 8	0.8224	0.9388	0.9825	N/A	no
Q0ZQL2	PPIA_PANPA	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
Q0ZQL0	PPIA_GORGO	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
Q0ZQL1	PPIA_PANTR	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	yes	no
P21568	CYPH_SOLLC	5, ., 2, ., 1, ., 8	0.8520	0.9388	0.9883	N/A	no
P21569	CYPH_MAIZE	5, ., 2, ., 1, ., 8	0.7928	0.9388	0.9825	N/A	no
Q38900	CP19A_ARATH	5, ., 2, ., 1, ., 8	0.8511	0.9333	0.9710	yes	no
Q5R8S7	PPIA_PONPY	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
Q8HXS3	PPIA_FELCA	5, ., 2, ., 1, ., 8	0.7041	0.9	0.9878	N/A	no
Q9SKQ0	CP19B_ARATH	5, ., 2, ., 1, ., 8	0.8095	0.9333	0.9655	no	no
P62941	PPIA_PAPAN	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
P62940	PPIA_MACMU	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	yes	no
P34887	CYPH_ALLCE	5, ., 2, ., 1, ., 8	0.8513	0.8166	0.98	N/A	no
P25007	PPIA_DROME	5, ., 2, ., 1, ., 8	0.6927	0.8833	0.7004	yes	no
P91791	PPIA_HEMPU	5, ., 2, ., 1, ., 8	0.6863	0.9	0.9878	N/A	no
P73789	PPI2_SYNY3	5, ., 2, ., 1, ., 8	0.7151	0.9166	0.9649	N/A	no
P52011	CYP3_CAEEL	5, ., 2, ., 1, ., 8	0.7396	0.9388	0.9768	yes	no
Q8W171	CYP1_SOYBN	5, ., 2, ., 1, ., 8	0.8875	0.9388	0.9825	no	no
P52015	CYP7_CAEEL	5, ., 2, ., 1, ., 8	0.7159	0.9388	0.9883	no	no
P24525	CYPH_BRANA	5, ., 2, ., 1, ., 8	0.8165	0.9388	0.9883	N/A	no
Q6DTV9	PPIA_AOTTR	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9878	N/A	no
Q0ZQK8	PPIA_HYLLA	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
Q0ZQK7	PPIA_NOMLE	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	yes	no
Q42406	CP18D_ARATH	5, ., 2, ., 1, ., 8	0.7869	0.9388	0.9825	no	no
Q9TTC6	PPIA_RABIT	5, ., 2, ., 1, ., 8	0.6923	0.9	0.9878	yes	no
P10111	PPIA_RAT	5, ., 2, ., 1, ., 8	0.7041	0.9	0.9878	yes	no
Q0ZQK6	PPIA_HYLSY	5, ., 2, ., 1, ., 8	0.7100	0.9	0.9818	N/A	no
Q54SM3	PPIA_DICDI	5, ., 2, ., 1, ., 8	0.7544	0.9277	0.9329	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II0204 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8;; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (173 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-113
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-100
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-79
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	8e-62
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	4e-59
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	6e-58
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-47
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	2e-45
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	4e-45
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	8e-42
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-37
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	7e-33
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	3e-29
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	8e-18
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-12
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	2e-12
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	2e-05

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  318 bits (818), Expect = e-113
 Identities = 130/166 (78%), Positives = 143/166 (86%), Gaps = 2/166 (1%)

Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           PKVFFD+T+GG+PAGRIVMELFADV P+TAENFRALCTGEKG G  GKP  YKGS+FHRV
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG--GKPFGYKGSTFHRV 58

Query: 64  IPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
           IP FM QGGDFT GNGTGG+SIYG KF DENF  KHTGPG+LSMANAGP TNGSQFFI+ 
Sbjct: 59  IPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITT 118

Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
            KT WLDGKHV FG+VVEGM+VVK IE +GS +G+ KK VVIADCG
Sbjct: 119 VKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  285 bits (731), Expect = e-100
 Identities = 118/169 (69%), Positives = 135/169 (79%), Gaps = 1/169 (0%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
              PKVFFD+++   PAGRIV ELF+DVTP+TAENFRALC G+K +G SGK LHYKGS F
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDK-VGSSGKNLHYKGSIF 71

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FMCQGGD T  NGTGGESIYG KF DENF  KH  PG+LSMANAGP TNGSQFF
Sbjct: 72  HRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFF 131

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I+     WLDGKHV FG+V+EGM VV+A+EK G++SG  KKPVV+ DCG
Sbjct: 132 ITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCG 180

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  234 bits (598), Expect = 1e-79
 Identities = 105/169 (62%), Positives = 126/169 (74%), Gaps = 4/169 (2%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+T+GG PAGRI MELFAD+ P+TAENFR  CTGE    K+G P  YKG  FHR
Sbjct: 18  NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGE--FRKAGLPQGYKGCQFHR 75

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDF  G+GTG  SIYGSKF DENF+ KHTGPG+LSMAN+GP TNG QFFI+
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 123 AGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGS-RSGRTKKPVVIADCG 169
             K +WLD KHV FG+V+ +G+ VV+ IE + +  + R K   VI++CG
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECG 184

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  187 bits (478), Expect = 8e-62
 Identities = 85/163 (52%), Positives = 97/163 (59%), Gaps = 19/163 (11%)

Query: 7   FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG 66
             D T G     RIV+EL+ D  P+T ENF +L  G            Y G++FHRVIPG
Sbjct: 1   TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPG 45

Query: 67  FMCQGGDFTAGNGTGGESIYGSKFADENFV-KKHTGPGILSMANAGPGTNGSQFFISAGK 125
           FM QGGD T     GG S  G KF DENF  K H   G LSMANAGP TNGSQFFI+   
Sbjct: 46  FMIQGGDPT--GTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAP 103

Query: 126 TEWLDGKHVAFGQVVEGMNVVKAIEKMG-SRSGRTKKPVVIAD 167
           T  LDGKH  FG+VVEGM+VV  IE+     +GR  KPV I+D
Sbjct: 104 TPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  180 bits (460), Expect = 4e-59
 Identities = 76/162 (46%), Positives = 91/162 (56%), Gaps = 18/162 (11%)

Query: 7   FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG 66
           F D+T      GRIV+ELF D  P+T ENF +LC  +KG         Y G+ FHRVIPG
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG--------FYDGTIFHRVIPG 47

Query: 67  FMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKT 126
           FM QGGD T     G  SI      DE   K     G LSMA +GP + GSQFFI+ G  
Sbjct: 48  FMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDA 102

Query: 127 EWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADC 168
             LDG +  FG+VVEGM+VV+ IEK+ +   R  K V I  C
Sbjct: 103 PHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  178 bits (453), Expect = 6e-58
 Identities = 72/167 (43%), Positives = 84/167 (50%), Gaps = 21/167 (12%)

Query: 12  VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQG 71
           +     G I +EL+ D  P+T  NF  L           K   Y G+ FHRVIPGFM QG
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQG 52

Query: 72  GDFTAGNGTGGESIYGSKFADENFVKKH--TGPGILSMANAG-PGTNGSQFFISAGKTEW 128
           GD T G+GTGG       F DENF         G LSMA AG P +NGSQFFI+     +
Sbjct: 53  GDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPF 109

Query: 129 LDGKHVAFGQVVEGMNVVKAIEK-----MGSRSGRTKKPVVIADCGI 170
           LDGK+  FGQVVEGM+VV  I+       G        PV I    I
Sbjct: 110 LDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  151 bits (382), Expect = 3e-47
 Identities = 72/148 (48%), Positives = 91/148 (61%), Gaps = 16/148 (10%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I + LF +  P+T ENF           ++G   +Y  + FHRVI GFM Q GD T G
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA-------RNG---YYNNTIFHRVIKGFMIQTGDPT-G 55

Query: 78  NGTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
           +GTGGESI+G +F DE F    KH  P  LSMANAGP TNGSQFFI+   T WLD KH  
Sbjct: 56  DGTGGESIWGKEFEDE-FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 136 FGQVVEGMNVVKAIEKMGSRSGRTKKPV 163
           FG+VV+GM+VV+ IE    ++ +  +P 
Sbjct: 115 FGRVVKGMDVVQRIEN--VKTDKNDRPY 140

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  146 bits (369), Expect = 2e-45
 Identities = 75/147 (51%), Positives = 91/147 (61%), Gaps = 15/147 (10%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I +EL+ +  P+T +NF  L    +G        +Y G+ FHR+I  FM QGGD T G
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG--------YYNGTIFHRLIKDFMIQGGDPT-G 55

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            G GG SIYG KF DE +   KHTG GILSMANAGP TNGSQFFI+   T WLDGKH  F
Sbjct: 56  TGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIF 115

Query: 137 GQVVEGMNVVKAIEKMGSRSGRTKKPV 163
           G+V +GM   K IE M     +T +P+
Sbjct: 116 GRVSKGM---KVIENMVEVQTQTDRPI 139

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  146 bits (369), Expect = 4e-45
 Identities = 70/156 (44%), Positives = 92/156 (58%), Gaps = 13/156 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G + +EL  D  P+  ENF  LC  +KG        +Y G+ FHR I  FM QGGD T G
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG--------YYDGTIFHRSIRNFMIQGGDPT-G 57

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            G GGESI+G  F DE      H G G+LSMAN+GP TNGSQFFI+    + LDGKH  F
Sbjct: 58  TGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVF 117

Query: 137 GQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
           G+VV G+  ++A+E +    + R K+ + I D  ++
Sbjct: 118 GRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  137 bits (346), Expect = 8e-42
 Identities = 68/135 (50%), Positives = 81/135 (60%), Gaps = 12/135 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I +ELF D  P+  ENF ALC        SG   +Y G  FHR I GFM Q GD T G
Sbjct: 10  GDIKIELFCDDCPKACENFLALCA-------SG---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 78  NGTGGESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            G GGESI+G KF DE     KH   G++SMAN GP TNGSQFFI+  K   LDGK+  F
Sbjct: 59  TGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVF 118

Query: 137 GQVVEGMNVVKAIEK 151
           G+V++G   +  +EK
Sbjct: 119 GKVIDGFETLDTLEK 133

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  127 bits (321), Expect = 1e-37
 Identities = 55/125 (44%), Positives = 72/125 (57%), Gaps = 12/125 (9%)

Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTA 76
           AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ QGGD T 
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 77  GNGTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
           G GTGGESIYG  F DE   + +    G++ MANAG  +NGSQFF +  K + L+ KH  
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 136 FGQVV 140
           FG+V 
Sbjct: 123 FGKVT 127

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  117 bits (294), Expect = 7e-33
 Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 17/173 (9%)

Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRV 63
           + F D+++G   AGR+V ELF DV P T ENFRAL TG  GI   +G  L Y  +  H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 64  IPGFMCQGGDFTAGNGTGGE------SIYGSKFADENFVKKHTGPGILSMANAGPGTNGS 117
                    D        GE      S  G+  ADE +  +HT  G+L+M + GP T+GS
Sbjct: 114 ---------DRNNNIIVLGELDSFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGS 164

Query: 118 QFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMG-SRSGRTKKPVVIADCG 169
            F I+ G +  LD K V FG+ V+ +++++ +E +     GR   PV ++ CG
Sbjct: 165 VFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217

Length = 249

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  105 bits (264), Expect = 3e-29
 Identities = 57/141 (40%), Positives = 74/141 (52%), Gaps = 20/141 (14%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G +V++LF D  P    NF  LC          K  +Y    F+ V   F+ Q GD T G
Sbjct: 7   GDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT-G 55

Query: 78  NGTGGESIYG-SKFADENFVK-------KHTGPGILSMANAGPGTNGSQFFISAGK-TEW 128
            G GGESIY         F +       KH+  G +SM NAG   NGSQF+I+ G+  ++
Sbjct: 56  TGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDY 115

Query: 129 LDGKHVAFGQVVEGMNVVKAI 149
           LDGKH  FGQVVEG +V++ I
Sbjct: 116 LDGKHTVFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 75.6 bits (186), Expect = 8e-18
 Identities = 52/162 (32%), Positives = 65/162 (40%), Gaps = 35/162 (21%)

Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTA 76
            G IV+EL+ D  P T ENF A     KG         Y  + FHRVI GF+ QGG FT 
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYV--RKG--------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 77  -------GNGTGGESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEW 128
                        E+  G               G ++MA    P +  SQFFI+      
Sbjct: 56  DLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNAS 105

Query: 129 LD-----GKHVAFGQVVEGMNVVKAIE--KMGSRSGRTKKPV 163
           LD       +  FG+V EGM+VV  I   +  S       PV
Sbjct: 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPV 147

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTA 76
           AG I +EL +   P + +NF            SG    Y  ++FHRVIPGFM QGG FT 
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 86

Query: 77  GNGTGGESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLD-GK-- 132
                  +      AD          G ++MA  A   +  SQFFI+     +LD G+  
Sbjct: 87  QMQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 143

Query: 133 --HVAFGQVVEGMNVVKAI-----EKMGSRSGRTKKPVVI 165
             +  FG+VV+GM+V   I       +G       KPVVI
Sbjct: 144 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 27/152 (17%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G IV++ F D  P T +NF   C       + G    Y  + FHRVI GFM QGG F  G
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFEPG 58

Query: 78  --NGTGGESIYGSKFADENFVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLDGK-- 132
                  E I   K    N +K     G L+MA    P +  +QFFI+    ++L+    
Sbjct: 59  MKQKATKEPI---KNEANNGLKNTR--GTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113

Query: 133 ------HVAFGQVVEGMNVVKAIEKMGS-RSG 157
                 +  F +VVEGM+VV  I+ + + RSG
Sbjct: 114 SLQGWGYCVFAEVVEGMDVVDKIKGVATGRSG 145

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 45/160 (28%)

Query: 30  PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG-------- 81
           P TA NF  L   E+G         Y G  FHRV  GF+ Q GD    N           
Sbjct: 19  PVTAGNFVDLV--ERGF--------YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKS 68

Query: 82  ------------GESIYGSKFA-----DENFVKKHTGPGILSMANA--GPGTNGSQFFIS 122
                        + +YG         DE  V      G ++MA     P +  SQFF  
Sbjct: 69  RTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFL 128

Query: 123 AGKTEW-------LDGKHVAFGQVVEGMNVVKAIEKMGSR 155
               E        LDG++  FG V +G+++++ + K+G +
Sbjct: 129 LKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL-KVGDK 167

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.89
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.75
PRK00969	508	hypothetical protein; Provisional	96.68
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.62
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.59
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	96.06
PRK00969	508	hypothetical protein; Provisional	95.31
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.67
PF04126	120	Cyclophil_like: Cyclophilin-like; InterPro: IPR007	84.59

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-59  Score=382.10  Aligned_cols=172  Identities=66%  Similarity=1.100  Sum_probs=166.2

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCC-cCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~-~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      ||+|||||++++...|||+||||.|.||+||+||..||+|++|.+ ..++...|+|+.||||+++|||||||++.++|++
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            899999999999999999999999999999999999999999853 3578899999999999999999999999999999


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      ++++||..|+||++.++|+++++|||||.|||+||||||||+.+.|||||+|+|||+||+|++|++.|+.+.++ ..+|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 55899


Q ss_pred             CCeEEeeeeEEeeC
Q 030245          161 KPVVIADCGIYYYV  174 (180)
Q Consensus       161 ~~i~I~~cg~l~~~  174 (180)
                      .+|.|.+||+|..-
T Consensus       168 ~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  168 ADVVISDCGELVKK  181 (372)
T ss_pred             cceEeccccccccc
Confidence            99999999999865

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-54  Score=325.81  Aligned_cols=167  Identities=64%  Similarity=1.080  Sum_probs=159.6

Q ss_pred             cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhc-CCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCT-GEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~-g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      .+|||||++++...|||+|+||++.+|+||+||.+||+ +.+++|       |.|++||||+|||+|||||++.+++.++
T Consensus        40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg  112 (217)
T KOG0880|consen   40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGG  112 (217)
T ss_pred             eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCC
Confidence            37999999999999999999999999999999999998 666654       9999999999999999999999999999


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK  161 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~  161 (180)
                      .++||.+|++|++.++|+++|.||||+.||++||||||||+...+|||++++|||+|++|||+|.+|+...++ +++|.+
T Consensus       113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e  192 (217)
T KOG0880|consen  113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE  192 (217)
T ss_pred             eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             CeEEeeeeEEeeCCCC
Q 030245          162 PVVIADCGIYYYVGVS  177 (180)
Q Consensus       162 ~i~I~~cg~l~~~~~~  177 (180)
                      +++|.+||.|....++
T Consensus       193 ~v~I~~~g~l~~~~~~  208 (217)
T KOG0880|consen  193 DVVIANCGELPVEYLE  208 (217)
T ss_pred             cEEEeecCcccccchh
Confidence            9999999998765543

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=8.6e-52  Score=319.41  Aligned_cols=171  Identities=68%  Similarity=1.156  Sum_probs=157.9

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |+||+||||+++++++.|+|+||||.+.||++|+||++||+|..... +++.++|+++.||||+|+++||+|++....+.
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~   91 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT   91 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence            46999999999999999999999999999999999999998765422 34678999999999999999999998766677


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++++..+++|...++|.++|+|||++.++++++|||||++++.|+||++|+|||||++|||||++|+++++.+++|.
T Consensus        92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~  171 (183)
T PTZ00060         92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK  171 (183)
T ss_pred             CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|+
T Consensus       172 ~~v~I~~cg~~~  183 (183)
T PTZ00060        172 KPVVVTDCGELQ  183 (183)
T ss_pred             CCeEEEEeEEcC
Confidence            999999999984

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=6.7e-51  Score=309.71  Aligned_cols=164  Identities=79%  Similarity=1.313  Sum_probs=151.9

Q ss_pred             cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCC
Q 030245            4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGE   83 (180)
Q Consensus         4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   83 (180)
                      |+|||||+++++++|+|+||||.+.||++|+||++||.+.++.++  +..+|+++.|||++|+++||+|++...++.++.
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~   78 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK   78 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence            899999999999999999999999999999999999987554322  345899999999999999999998766677778


Q ss_pred             cccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCe
Q 030245           84 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPV  163 (180)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~i  163 (180)
                      ++++..+++|...++|+++|+|||++.++++++|||||++++.++||++|+|||||++|||||++|+++++++++|.++|
T Consensus        79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i  158 (164)
T cd01926          79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV  158 (164)
T ss_pred             cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence            88888899888889999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEeeee
Q 030245          164 VIADCG  169 (180)
Q Consensus       164 ~I~~cg  169 (180)
                      +|.+||
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-51  Score=295.15  Aligned_cols=167  Identities=59%  Similarity=1.067  Sum_probs=159.5

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      ||.||||+++++..+|||.||||.+.+|+|++||.++|+|+.-  ..++..-|++++|||++++|+||+||+..+++++.
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~   87 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGV   87 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceE
Confidence            9999999999999999999999999999999999999999742  22356679999999999999999999999999999


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK  161 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~  161 (180)
                      .++|+.+|++|++.++|..+|+||||++|++++|.|||||.+.+.+||++|+|||||++|+.++++|+.+|+- +++|+-
T Consensus        88 ~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl  167 (177)
T KOG0879|consen   88 ASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKL  167 (177)
T ss_pred             EEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             CeEEeeeeEE
Q 030245          162 PVVIADCGIY  171 (180)
Q Consensus       162 ~i~I~~cg~l  171 (180)
                      +|.|..||.+
T Consensus       168 ~v~i~qCGem  177 (177)
T KOG0879|consen  168 PVVIVQCGEM  177 (177)
T ss_pred             cEEEeecccC
Confidence            9999999963

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=2.5e-50  Score=311.79  Aligned_cols=169  Identities=62%  Similarity=1.079  Sum_probs=153.6

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |.||+|||||++++++.|+|+||||.+.||++|+||++||+++...  .+....|+++.||||+|+++||+|++..+++.
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~--~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~   93 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK--AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGT   93 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc--cCcccccCCcEEEEEcCCcEEEcCCcccCCCC
Confidence            4689999999999999999999999999999999999999875421  11223499999999999999999998767778


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGR  158 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~  158 (180)
                      ++.++++..+++|...++|.++|+|||+++++++++|||||++++.|+||++|+|||||+ +||+||++|++++++ +++
T Consensus        94 g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~  173 (186)
T PLN03149         94 GCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR  173 (186)
T ss_pred             CcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCC
Confidence            888888888998888889999999999999999999999999999999999999999999 799999999999996 889


Q ss_pred             CCCCeEEeeeeEE
Q 030245          159 TKKPVVIADCGIY  171 (180)
Q Consensus       159 p~~~i~I~~cg~l  171 (180)
                      |.++|+|.+||++
T Consensus       174 P~~~i~I~~cG~~  186 (186)
T PLN03149        174 PKLACVISECGEM  186 (186)
T ss_pred             CcCCeEEEeCEeC
Confidence            9999999999984

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.6e-49  Score=317.08  Aligned_cols=171  Identities=36%  Similarity=0.571  Sum_probs=154.8

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecC-cEEEeCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPG-FMCQGGDFTAGNGT   80 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~-~~iq~G~~~~~~~~   80 (180)
                      +|+||||+++++++.|+|+||||.+.||+||+||++||+|.++.+. .+....|+|+.||||+++ ++||+||+..    
T Consensus        52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----  127 (249)
T PTZ00221         52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----  127 (249)
T ss_pred             CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence            8999999999999999999999999999999999999998876432 233456999999999985 8999999753    


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT  159 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p  159 (180)
                      .+.+.+|..|++|...++|+++|+|||++.+++++||||||||.++|+||++|+|||||++||+||++|++++++ +++|
T Consensus       128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP  207 (249)
T PTZ00221        128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP  207 (249)
T ss_pred             CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence            234566888999999999999999999999999999999999999999999999999999999999999999986 7899


Q ss_pred             CCCeEEeeeeEEeeCCCC
Q 030245          160 KKPVVIADCGIYYYVGVS  177 (180)
Q Consensus       160 ~~~i~I~~cg~l~~~~~~  177 (180)
                      .++|+|.+||+|+++...
T Consensus       208 ~~~V~I~~Cgvl~~~~p~  225 (249)
T PTZ00221        208 LLPVTVSFCGALTGEKPP  225 (249)
T ss_pred             CCCeEEEECeEecCCCCC
Confidence            999999999999987764

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-48  Score=301.34  Aligned_cols=165  Identities=67%  Similarity=1.149  Sum_probs=161.7

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |+||+||+++.++....|||+++|..+..|++++||..||+|++|+|       |+|+.||||+|.|++||||++.++++
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngt  206 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGT  206 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCC
Confidence            67999999999999999999999999999999999999999999987       99999999999999999999999999


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++||.+|.+|++.++|..+|+||||++|+|++||||||++....|||++|+|||.|++||+|++++++.+++.++|.
T Consensus       207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~  286 (298)
T KOG0111|consen  207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQ  286 (298)
T ss_pred             CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      +.|+|.+||.+.
T Consensus       287 qkv~i~~cge~~  298 (298)
T KOG0111|consen  287 QKVKIVECGEIE  298 (298)
T ss_pred             eEEEEEeccccC
Confidence            999999999873

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=8.3e-47  Score=285.82  Aligned_cols=151  Identities=46%  Similarity=0.753  Sum_probs=140.5

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~   74 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLC----------KKGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF   74 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHH----------hcCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence            89999999999999999999999999          5678999999999999999999986 567777888888888886


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEEe
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGIYY  172 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l~  172 (180)
                      . .++|+++|+|||+++++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|.++|+|.+|+++.
T Consensus        75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            5 678999999999999999999999999999999999999999999999999999999986 78999999999999999


Q ss_pred             eCCC
Q 030245          173 YVGV  176 (180)
Q Consensus       173 ~~~~  176 (180)
                      +|-.
T Consensus       155 dpf~  158 (159)
T cd01923         155 DPFE  158 (159)
T ss_pred             CCCC
Confidence            8743

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-48  Score=273.22  Aligned_cols=152  Identities=51%  Similarity=0.825  Sum_probs=145.0

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      -|.|+++     |+.|.|++|||-+.||+||+||.+|+          +.+||+|+.||||+++|+|||||++ +.+.++
T Consensus         9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGG   72 (164)
T KOG0881|consen    9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGG   72 (164)
T ss_pred             CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCc
Confidence            4788888     89999999999999999999999999          8889999999999999999999997 789999


Q ss_pred             CcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           83 ESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      .++||.+|++|.. .++|..+|.||||+.|||++||||||||++.++||+++++||||+.||+|+.+|-.+.++ .++|.
T Consensus        73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi  152 (164)
T KOG0881|consen   73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI  152 (164)
T ss_pred             cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence            9999999999988 899999999999999999999999999999999999999999999999999999999998 78999


Q ss_pred             CCeEEeeeeE
Q 030245          161 KPVVIADCGI  170 (180)
Q Consensus       161 ~~i~I~~cg~  170 (180)
                      .+++|.+.-.
T Consensus       153 ~~~kIika~~  162 (164)
T KOG0881|consen  153 DEVKIIKAYP  162 (164)
T ss_pred             cceeeEeeec
Confidence            9999988754

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=9.5e-46  Score=278.36  Aligned_cols=144  Identities=48%  Similarity=0.774  Sum_probs=134.1

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||++.||++|+||++||          +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   75 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALC----------ASGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF   75 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHH----------hcCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence            89999999999999999999999999          5568999999999999999999986 556677778888898887


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeee
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCG  169 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg  169 (180)
                      . .++|+++|+|||+++++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|..+|+|.+|.
T Consensus        76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            6 678889999999999999999999999999999999999999999999999999999986 78999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.9e-46  Score=277.42  Aligned_cols=145  Identities=49%  Similarity=0.782  Sum_probs=130.8

Q ss_pred             CEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCC
Q 030245           14 GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADE   93 (180)
Q Consensus        14 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (180)
                      .|+.|+|+||||++.||+||+||++||          +.++|+|+.||||+|+|+|||||+..+.+.++..   .++++|
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E   71 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDE   71 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccc
Confidence            489999999999999999999999999          6779999999999999999999998765766663   689999


Q ss_pred             ccccCCCC--ceEEEeeecC-CCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC-----CCCCCCeEE
Q 030245           94 NFVKKHTG--PGILSMANAG-PGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-----GRTKKPVVI  165 (180)
Q Consensus        94 ~~~~~~~~--~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~~~i~I  165 (180)
                      .+...|.+  +|+|||||.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|++..+..     ..|..+++|
T Consensus        72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i  151 (158)
T COG0652          72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI  151 (158)
T ss_pred             ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence            88887777  9999999999 999999999999999999999999999999999999999976652     356678888


Q ss_pred             eeeeEE
Q 030245          166 ADCGIY  171 (180)
Q Consensus       166 ~~cg~l  171 (180)
                      .+..++
T Consensus       152 ~~~~~~  157 (158)
T COG0652         152 LSVKIV  157 (158)
T ss_pred             eeeeee
Confidence            887764

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2e-45  Score=280.14  Aligned_cols=151  Identities=42%  Similarity=0.631  Sum_probs=134.8

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccC-------
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYG-------   87 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------   87 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+++.||||+|+++||+|++. .++.++.++++       
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~----------~~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~   72 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA   72 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHH----------hcCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence            89999999999999999999999999          5668999999999999999999986 44555555443       


Q ss_pred             CCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCC-CCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeE
Q 030245           88 SKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGK-TEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVV  164 (180)
Q Consensus        88 ~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~  164 (180)
                      ..+++|.. .++|+++|+||||+.++++++|||||++++ .++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus        73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~  152 (166)
T cd01921          73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR  152 (166)
T ss_pred             cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence            24566654 778999999999999999999999999975 799999999999999999999999999987 789999999


Q ss_pred             EeeeeEEeeCCC
Q 030245          165 IADCGIYYYVGV  176 (180)
Q Consensus       165 I~~cg~l~~~~~  176 (180)
                      |.+|++|.+|=.
T Consensus       153 I~~~~i~~~pf~  164 (166)
T cd01921         153 IKHTHILDDPFP  164 (166)
T ss_pred             EEEEEEECCCCC
Confidence            999999998754

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.7e-45  Score=275.57  Aligned_cols=142  Identities=50%  Similarity=0.809  Sum_probs=132.9

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||.+.||++|+||++||          +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   72 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHA----------RNGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF   72 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHh----------hcCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence            88999999999999999999999999          5668999999999999999999986 567777788888898887


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEee
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIAD  167 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~  167 (180)
                      . .++|.++|+|||++.++++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            6 788998999999999999999999999999999999999999999999999999999987 789999999986

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=3.6e-45  Score=273.22  Aligned_cols=142  Identities=51%  Similarity=0.855  Sum_probs=131.9

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~   72 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELA----------KRGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI   72 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence            89999999999999999999999999          5678999999999999999999976 456667778888888885


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEee
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIAD  167 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~i~I~~  167 (180)
                      . .++|.++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|+++++++++|.++|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~  146 (146)
T cd01922          73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK  146 (146)
T ss_pred             ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence            4 788999999999999999999999999999999999999999999999999999999998889999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=2.2e-43  Score=269.92  Aligned_cols=150  Identities=39%  Similarity=0.648  Sum_probs=138.3

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||.+.||++|+||++||          +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus        12 Ts~G~i~ieL~~~~~P~t~~nF~~L~----------~~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~   80 (171)
T cd01925          12 TTAGDIDIELWSKEAPKACRNFIQLC----------LEGYYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEF   80 (171)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHH----------hcCCCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCccc
Confidence            89999999999999999999999999          5668999999999999999999976 567777888888898887


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l  171 (180)
                      . .++|+++|+|||++.++++++|||||++++.++||++|+|||||+ ++++++++|++++++ +++|.++|+|.+|+++
T Consensus        81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~  160 (171)
T cd01925          81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL  160 (171)
T ss_pred             ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence            6 577899999999999999999999999999999999999999999 468899999999987 7899999999999999


Q ss_pred             eeCC
Q 030245          172 YYVG  175 (180)
Q Consensus       172 ~~~~  175 (180)
                      .++-
T Consensus       161 ~~pf  164 (171)
T cd01925         161 ENPF  164 (171)
T ss_pred             cCCc
Confidence            8764

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1.1e-42  Score=269.91  Aligned_cols=151  Identities=32%  Similarity=0.546  Sum_probs=130.6

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +++|.|+     |+.|+|+||||.+.||++|+||++||          +.+||+|+.|||++|+|++|||++....+   
T Consensus        28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---   89 (190)
T PRK10903         28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---   89 (190)
T ss_pred             CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---
Confidence            5667666     89999999999999999999999999          66799999999999999999999753221   


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLDG-----KHVAFGQVVEGMNVVKAIEKMGSRS  156 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~  156 (180)
                      ...++..+.+|.....|+.+|+|||++.+ +++++|||||++++.++||+     +|+|||+|++|||||++|+++++++
T Consensus        90 ~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~  169 (190)
T PRK10903         90 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  169 (190)
T ss_pred             CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCC
Confidence            12234567777665567779999999865 89999999999999999984     8999999999999999999998863


Q ss_pred             -----CCCCCCeEEeeeeEE
Q 030245          157 -----GRTKKPVVIADCGIY  171 (180)
Q Consensus       157 -----~~p~~~i~I~~cg~l  171 (180)
                           ++|.++|+|.+|+++
T Consensus       170 ~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        170 VGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCcccCCeEEEEEEEe
Confidence                 689999999999886

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-43  Score=290.32  Aligned_cols=153  Identities=44%  Similarity=0.719  Sum_probs=146.7

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|.+.|||+.+.+|++|+||++||          +++||+|+.|||.+.||+|||||++ +.|.|++++||.+|.+|.
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf  352 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF  352 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCcccccc
Confidence            88999999999999999999999999          7889999999999999999999997 789999999999999998


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEEe
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGIYY  172 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l~  172 (180)
                      . .+.|+.||+||||++|||++||||||+..++.+||++|+|||||+.|+++|.+|++++++ +++|+.+|+|.+.-|+.
T Consensus       353 ~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFV  432 (518)
T KOG0883|consen  353 CSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFV  432 (518)
T ss_pred             CCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEee
Confidence            7 889999999999999999999999999999999999999999999999999999999999 88999999999999999


Q ss_pred             eCCCCC
Q 030245          173 YVGVSK  178 (180)
Q Consensus       173 ~~~~~~  178 (180)
                      +|=.|.
T Consensus       433 dPfeEa  438 (518)
T KOG0883|consen  433 DPFEEA  438 (518)
T ss_pred             CcHHHH
Confidence            875443

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.2e-41  Score=258.48  Aligned_cols=144  Identities=33%  Similarity=0.562  Sum_probs=122.9

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+|+||.++||++|+||++||          +.+||+++.||||+|+++||||++..+.+.   ..++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~   72 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA   72 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence            89999999999999999999999999          667999999999999999999997533221   12345667775


Q ss_pred             cccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCC-------C-CccEEEEEEcCHHHHHHHHhCCCCC-----CCCC
Q 030245           95 FVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLD-------G-KHVAFGQVVEGMNVVKAIEKMGSRS-----GRTK  160 (180)
Q Consensus        95 ~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~  160 (180)
                      ....++.+|+||||+.+ |++++|||||++++.++||       + +|+|||||++|||||++|++++++.     ++|.
T Consensus        73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~  152 (164)
T PRK10791         73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_pred             cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence            54444579999999875 9999999999999988776       3 6999999999999999999998863     6899


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      .+|+|.+|.+.
T Consensus       153 ~~v~I~~~~i~  163 (164)
T PRK10791        153 EDVIIESVTVS  163 (164)
T ss_pred             CCeEEEEEEEe
Confidence            99999999763

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=4.2e-41  Score=253.64  Aligned_cols=140  Identities=35%  Similarity=0.498  Sum_probs=121.6

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+++.||||+|++++|+|++....+.   ..++..+.+|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~   70 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYV----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA   70 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence            88999999999999999999999999          667999999999999999999997643222   22345667776


Q ss_pred             cccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC-----CCCCCCe
Q 030245           95 FVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLDG-----KHVAFGQVVEGMNVVKAIEKMGSRS-----GRTKKPV  163 (180)
Q Consensus        95 ~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~~~i  163 (180)
                      ....|+++|+||||+.+ +++++|||||++++.++||+     +|+|||+|++|||||++|++++++.     ++|..+|
T Consensus        71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v  150 (155)
T cd01920          71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV  150 (155)
T ss_pred             cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence            65566789999999965 89999999999999999995     7999999999999999999999873     5888899


Q ss_pred             EEee
Q 030245          164 VIAD  167 (180)
Q Consensus       164 ~I~~  167 (180)
                      +|.+
T Consensus       151 ~i~~  154 (155)
T cd01920         151 IIES  154 (155)
T ss_pred             EEEE
Confidence            8876

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=9.4e-41  Score=251.32  Aligned_cols=151  Identities=46%  Similarity=0.795  Sum_probs=130.0

Q ss_pred             EEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC-Ccc
Q 030245            7 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG-ESI   85 (180)
Q Consensus         7 ~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~-~~~   85 (180)
                      ||+|++++  +|+|+||||+++||++|+||++||          +.++|+++.|||++|++++|+|++......+. ...
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~----------~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~   68 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLC----------TSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST   68 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHH----------HTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh----------cccccCCceeecccccceeeeeeccCCCCccccccc
Confidence            78888754  999999999999999999999999          44589999999999999999999765433111 122


Q ss_pred             cCCCCCCCcc-ccCCCCceEEEeeecC--CCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 030245           86 YGSKFADENF-VKKHTGPGILSMANAG--PGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP  162 (180)
Q Consensus        86 ~~~~~~~e~~-~~~~~~~G~vs~~~~g--~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~  162 (180)
                      .+.++++|.. ...++++|+|+|++.+  +++++|||||+|++.++||++|+|||+|++||++|++|++++++. +|.++
T Consensus        69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~  147 (155)
T PF00160_consen   69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD  147 (155)
T ss_dssp             TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred             CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence            3446777874 3344479999999976  889999999999999999999999999999999999999998888 99999


Q ss_pred             eEEeeeeE
Q 030245          163 VVIADCGI  170 (180)
Q Consensus       163 i~I~~cg~  170 (180)
                      |+|.+|||
T Consensus       148 v~I~~cgv  155 (155)
T PF00160_consen  148 VTISSCGV  155 (155)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeEC
Confidence            99999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-42  Score=286.39  Aligned_cols=148  Identities=45%  Similarity=0.756  Sum_probs=141.3

Q ss_pred             ECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCC
Q 030245           12 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFA   91 (180)
Q Consensus        12 ~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~   91 (180)
                      +--|+.|+|.|.||+++||+||+||...|          ++|||+|..||||+++||||+||++ ++|+|++++||..|+
T Consensus       408 iihtt~gdi~~kl~p~ecpktvenf~th~----------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfe  476 (558)
T KOG0882|consen  408 IIHTTQGDIHIKLYPEECPKTVENFTTHS----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFE  476 (558)
T ss_pred             EEEecccceEEEecccccchhhhhhhccc----------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccch
Confidence            33489999999999999999999999999          8899999999999999999999998 789999999999999


Q ss_pred             CCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeee
Q 030245           92 DENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCG  169 (180)
Q Consensus        92 ~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg  169 (180)
                      +|.+ .++|+++-+||||+.|||+||||||||+.+.||||++++|||||+.||||+.+|+++.++ +++|.+++.|.+.-
T Consensus       477 defh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis  556 (558)
T KOG0882|consen  477 DEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS  556 (558)
T ss_pred             hhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence            9998 899999999999999999999999999999999999999999999999999999999998 88999999999865


Q ss_pred             E
Q 030245          170 I  170 (180)
Q Consensus       170 ~  170 (180)
                      +
T Consensus       557 v  557 (558)
T KOG0882|consen  557 V  557 (558)
T ss_pred             c
Confidence            3

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-41  Score=236.69  Aligned_cols=147  Identities=47%  Similarity=0.730  Sum_probs=138.6

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |..|+|.||||.+.+|++|+||+.+|          ...||++|.|||-+|+|++|+|++. ..|.++.+++|.+|++|.
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~----------~~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~   75 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALC----------ASDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY   75 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHh----------hhhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence            77899999999999999999999999          4558999999999999999999986 678999999999999998


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~cg~l  171 (180)
                      . .++|+.||+||||+.||++++|||||+.+..|+||-+|++||+||+|+|.|++|++++.+  ..+|..++.|.+..+.
T Consensus        76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih  155 (161)
T KOG0884|consen   76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_pred             HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence            8 789999999999999999999999999999999999999999999999999999999998  4799999999988765


Q ss_pred             e
Q 030245          172 Y  172 (180)
Q Consensus       172 ~  172 (180)
                      -
T Consensus       156 a  156 (161)
T KOG0884|consen  156 A  156 (161)
T ss_pred             c
Confidence            3

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.6e-39  Score=242.41  Aligned_cols=141  Identities=58%  Similarity=0.913  Sum_probs=126.7

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+++.|||++|++++|+|++......+  +.++..+++|.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~----------~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLA----------RGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHH----------hcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            78899999999999999999999999          4558999999999999999999986443222  34566788888


Q ss_pred             cccC-CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEee
Q 030245           95 FVKK-HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIAD  167 (180)
Q Consensus        95 ~~~~-~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~  167 (180)
                      .... |+++|+|+|++.++++++|||||++++.++||++|+|||||++||++|++|++.+++ +++|.++|+|.+
T Consensus        72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            8655 888999999999999999999999999999999999999999999999999999998 899999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-40  Score=250.85  Aligned_cols=164  Identities=74%  Similarity=1.303  Sum_probs=157.1

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEE---eecCcEEEeCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR---VIPGFMCQGGDFTAG   77 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~r---v~~~~~iq~G~~~~~   77 (180)
                      |-||+||||++++++++|++.++|+.+..|+|++||..||+|+++.+       |++..|||   ..+++++|+||.+..
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~h   73 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCH   73 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCccccc
Confidence            77999999999999999999999999999999999999999988764       99999999   344799999999999


Q ss_pred             CCCCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCC
Q 030245           78 NGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG  157 (180)
Q Consensus        78 ~~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  157 (180)
                      +++++.++|+++|++|++.++|..+|.||||+.+|++++|||||+++...|||++++|||+|.+||+++++|+.....++
T Consensus        74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g  153 (167)
T KOG0865|consen   74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG  153 (167)
T ss_pred             CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCCeEEeeeeEE
Q 030245          158 RTKKPVVIADCGIY  171 (180)
Q Consensus       158 ~p~~~i~I~~cg~l  171 (180)
                      ++.++|+|.+||.|
T Consensus       154 k~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  154 KTSKKITIADCGQL  167 (167)
T ss_pred             cccccEEEecCCcC
Confidence            99999999999975

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=4.3e-38  Score=241.51  Aligned_cols=128  Identities=32%  Similarity=0.518  Sum_probs=108.6

Q ss_pred             CEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCC--------------
Q 030245           14 GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNG--------------   79 (180)
Q Consensus        14 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~--------------   79 (180)
                      .|+.|+|+||||++.||++|+||++||          +.++|+++.||||+|++++|+|++...+.              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p   72 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP   72 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence            488999999999999999999999999          67799999999999999999999864311              


Q ss_pred             ------CCCCcccCCCC-----CCCccccCCCCceEEEeeecC--CCCCCccEEEEcC-------CCCCCCCCccEEEEE
Q 030245           80 ------TGGESIYGSKF-----ADENFVKKHTGPGILSMANAG--PGTNGSQFFISAG-------KTEWLDGKHVAFGQV  139 (180)
Q Consensus        80 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~vs~~~~g--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~V  139 (180)
                            ..+.+.++..+     .++...+.|+++|+|||++++  +++++|||||+++       +.++||++|+|||||
T Consensus        73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V  152 (176)
T cd01924          73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV  152 (176)
T ss_pred             ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence                  01223343333     244556788889999999987  7999999999998       789999999999999


Q ss_pred             EcCHHHHHHHHh
Q 030245          140 VEGMNVVKAIEK  151 (180)
Q Consensus       140 i~G~~vl~~I~~  151 (180)
                      ++|||||++|+.
T Consensus       153 veG~dvl~~I~~  164 (176)
T cd01924         153 TDGLDILRELKV  164 (176)
T ss_pred             ecCHHHHHhhcC
Confidence            999999999976

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-37  Score=252.14  Aligned_cols=149  Identities=40%  Similarity=0.675  Sum_probs=139.8

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|.||||+..||++|+||++||          ..+||+|+.|||++|+|.+|||++. ++++|+.++||.+|.+|.
T Consensus        19 TT~G~I~iELW~kE~P~acrnFiqKO----------Gegyy~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~   87 (439)
T KOG0885|consen   19 TTKGDIDIELWAKECPKACRNFIQLC----------LEGYYDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEF   87 (439)
T ss_pred             eccCceeeeehhhhhhHHHHHHHHHH----------HhccccCceeeeeccchhcccCCCC-CCCCCccccccccchhhc
Confidence            88999999999999999999999999          6789999999999999999999996 789999999999999998


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l  171 (180)
                      + +++++++|+|+||+.+.+.||||||+||++.|+|++++++||+|+ +-+-.+-+|..+.++ +.+|..+-+|.+|.|+
T Consensus        88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~  167 (439)
T KOG0885|consen   88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL  167 (439)
T ss_pred             CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence            8 889999999999999999999999999999999999999999998 456677888888887 8899999999999998


Q ss_pred             eeC
Q 030245          172 YYV  174 (180)
Q Consensus       172 ~~~  174 (180)
                      ..+
T Consensus       168 ~np  170 (439)
T KOG0885|consen  168 INP  170 (439)
T ss_pred             cCc
Confidence            643

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-36  Score=248.28  Aligned_cols=149  Identities=42%  Similarity=0.638  Sum_probs=138.6

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCC------
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGS------   88 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~------   88 (180)
                      |++|+|+|+||-+.+|.+|.||++||          +..||+.|.||-|..+|.+|.||++ +.|.|+.++|+.      
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~   75 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA   75 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence            89999999999999999999999999          7889999999999999999999998 588999998863      


Q ss_pred             -CCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCC-CCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeE
Q 030245           89 -KFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKT-EWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVV  164 (180)
Q Consensus        89 -~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~-~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~  164 (180)
                       .|+.|.. .++|.+.|+|||++.|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+..-++ +++|.++|+
T Consensus        76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR  155 (479)
T KOG0415|consen   76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR  155 (479)
T ss_pred             hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence             2456655 8899999999999999999999999999876 89999999999999999999999998777 899999999


Q ss_pred             EeeeeEEeeC
Q 030245          165 IADCGIYYYV  174 (180)
Q Consensus       165 I~~cg~l~~~  174 (180)
                      |.+.-+|+||
T Consensus       156 I~HTiiLdDP  165 (479)
T KOG0415|consen  156 IKHTIILDDP  165 (479)
T ss_pred             eeeeEEecCC
Confidence            9999999976

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=6.9e-06  Score=70.43  Aligned_cols=149  Identities=19%  Similarity=0.218  Sum_probs=117.1

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC--CcccCC---CCCC-
Q 030245           19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG--ESIYGS---KFAD-   92 (180)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~--~~~~~~---~~~~-   92 (180)
                      .|.|+|+.+-+|.-++-|..+|          ..+++++..|.||...+++|.||..-....++  +.+.++   .+++ 
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFC----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcC----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence            8999999999999999999999          67789999999999999999998643322222  111111   1232 


Q ss_pred             -CccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeE
Q 030245           93 -ENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGI  170 (180)
Q Consensus        93 -e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~  170 (180)
                       ....++|. .-++.+.+......+-+|++.-...+.+..+..|+|++.++-++++.|....++ ...|+.++.|.+..+
T Consensus       183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel  261 (558)
T KOG0882|consen  183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL  261 (558)
T ss_pred             ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence             23356665 567777776666778899999999999999999999999999999999999888 678999999999887


Q ss_pred             EeeCCCCC
Q 030245          171 YYYVGVSK  178 (180)
Q Consensus       171 l~~~~~~~  178 (180)
                      ..+=..|+
T Consensus       262 gRRmaver  269 (558)
T KOG0882|consen  262 GRRMAVER  269 (558)
T ss_pred             hhhhhHHh
Confidence            76555444

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.75  E-value=0.012  Score=51.62  Aligned_cols=102  Identities=21%  Similarity=0.342  Sum_probs=63.5

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245           19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK   98 (180)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~   98 (180)
                      .+.+||.++ ||.++++|+.+..          .+++.   +.+. .+-+|.           .....+...+.|+... 
T Consensus       202 y~evE~~~~-~p~s~EH~la~~~----------~G~~~---Vd~~-tsTfi~-----------d~~L~g~~~p~En~~~-  254 (503)
T TIGR03268       202 YVEVELDPN-APVSVEHFLALME----------DGTFR---VDYR-TSTFIS-----------DDSLRGLDKPEENIEK-  254 (503)
T ss_pred             EEEEEEcCC-CChhHHHHHHHHh----------CCeEE---Eeee-ecceEe-----------cccccCccCCccccCc-
Confidence            567788777 8999999999983          22221   1111 111111           0111233344444332 


Q ss_pred             CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245           99 HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                       ..+|+|++.+.|.+  ....||-..+.+. .-.|+|+|+|+.|||+++--+.
T Consensus       255 -R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       255 -RRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             -ccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence             33899999998754  3578888877653 2358999999999999875444

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.68  E-value=0.013  Score=51.54  Aligned_cols=102  Identities=21%  Similarity=0.348  Sum_probs=63.8

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245           19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK   98 (180)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~   98 (180)
                      .+.+||.++ ||.++++|+.+..          .+.+.   +.+. .+-+|.           .....+...+.|+... 
T Consensus       205 y~eve~~~~-~p~s~EH~la~~~----------~G~f~---Vd~~-tstfI~-----------d~~L~g~~~p~En~~~-  257 (508)
T PRK00969        205 YVEVELDPG-APKSVEHFLALLE----------DGTFE---VDFE-TSTFIA-----------DDRLQGLKIPEENFEP-  257 (508)
T ss_pred             EEEEEEcCC-CCchHHHHHHHHh----------CCeEE---Eeee-ecceEe-----------eccccCccCCccccCc-
Confidence            567788877 7999999999983          22221   1111 111111           0111133344444433 


Q ss_pred             CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245           99 HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                       .++|+|++.+.|.+  ....||-..+.+. .-.|+|+|+|+.|||+++--.+
T Consensus       258 -R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        258 -RRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             -cccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence             33899999998654  3578998877653 2358999999999999875443

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0095  Score=50.80  Aligned_cols=103  Identities=25%  Similarity=0.414  Sum_probs=65.8

Q ss_pred             EEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 030245           18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVK   97 (180)
Q Consensus        18 G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (180)
                      =.+.+||.+. +|+++++|+.|..              +|..=.....|-++.  +         .+....+.+.|+..+
T Consensus       203 Ty~eve~s~n-sP~saEH~lalme--------------dG~lri~~~tntfis--~---------~~lq~~~~~~en~d~  256 (512)
T COG4070         203 TYFEVELSRN-SPKSAEHFLALME--------------DGTLRIDVTTNTFIS--D---------DTLQEEKVPEENFDL  256 (512)
T ss_pred             EEEEEEeCCC-CchhHHHHHHHhh--------------cceEEEEEeccceee--c---------cccccccCChhhhhh
Confidence            3678888887 7999999999982              222222223333322  1         111233455555554


Q ss_pred             CCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245           98 KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        98 ~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      .  .+|.|+..+.|-+  ...-||--.+.+.- -.|.|+|||++||++++--..
T Consensus       257 R--erG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         257 R--ERGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             h--hcceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence            4  3899999987643  34778877665432 358899999999999876554

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.59  E-value=0.028  Score=49.31  Aligned_cols=113  Identities=25%  Similarity=0.373  Sum_probs=66.7

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245           19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK   98 (180)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~   98 (180)
                      -|.|+||.+.||.++..|.++. |-..     +.  ==-..+|=..++..+.=|+.          .+...+.+|+..-.
T Consensus       376 vi~IeLydd~AP~s~~yFRk~t-GL~~-----~~--VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~  437 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFT-GLKT-----KP--VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPED  437 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhc-CCcc-----cc--cceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCC
Confidence            6899999999999999999876 2110     00  00124555556654442222          22345566666555


Q ss_pred             CCCceEEEeeecCCCCCCccEEEEcCCC-------CCCCCCccEEEEEEcCHHHHHHHHh
Q 030245           99 HTGPGILSMANAGPGTNGSQFFISAGKT-------EWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~-------~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      ...+|.|++-|......| -.=|-|.++       ..+++.+ ++|+|+++++.|+++..
T Consensus       438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE  495 (503)
T ss_pred             ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence            556888888775321111 112223332       2445544 68999999999988765

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=96.06  E-value=0.043  Score=40.88  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=56.1

Q ss_pred             EEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecC--cEEEeCCCCCCCCCCCCcccCCCCCCCcc
Q 030245           18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG--FMCQGGDFTAGNGTGGESIYGSKFADENF   95 (180)
Q Consensus        18 G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~--~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   95 (180)
                      -.++.+|..|.||+||+.|.+.-             =|.+..+|-...+  .++.-+++.           ......|+.
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~   63 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENH   63 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SE
T ss_pred             eEEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcC
Confidence            36899999999999999999987             2666677766554  344444432           012233444


Q ss_pred             ccCCCCceEEEee--e-cCCC--CC-CccEEEEcCCCCC-CCC-----CccEEEEEEcCHHHHHHHHh
Q 030245           96 VKKHTGPGILSMA--N-AGPG--TN-GSQFFISAGKTEW-LDG-----KHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        96 ~~~~~~~G~vs~~--~-~g~~--~~-~sqFfI~l~~~~~-ld~-----~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      .... .+|-|.+.  . ...+  .. =++.-|..+-..- +.+     .-.+|++|++|+|-|.++.+
T Consensus        64 T~~P-~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   64 TVTP-IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR  130 (147)
T ss_dssp             ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred             cccC-CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence            3333 37777776  1 1111  11 1344444433221 111     13579999999997777765

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>PRK00969 hypothetical protein; Provisional

Probab=95.31  E-value=0.12  Score=45.66  Aligned_cols=109  Identities=16%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|.|+|||.  .+..++..++..+.            -|.|..++=..+ ..+.+|.+..            .++++.
T Consensus        57 TtkG~i~Iel~--~~~~~~~~w~e~yk------------~~e~~~i~W~s~-~~vAfGp~~s------------~l~p~~  109 (508)
T PRK00969         57 TTKGEIVIELT--EENESVDFWLENYK------------EFEGKSLRWTSR-SAVAFGPFES------------DLEPSR  109 (508)
T ss_pred             ccCceEEEEEc--cCcchhhHHHHhHH------------hhcCCceEeccc-cceeEccccc------------Cccccc
Confidence            88999999999  34556666666552            245555443333 3344454321            122222


Q ss_pred             cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCC--ccEEEEEEcCHHHHHHHHh
Q 030245           95 FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK--HVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        95 ~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~--~~vfG~Vi~G~~vl~~I~~  151 (180)
                      ... ...++-|.+.-+|=+...+.+.|+..++...-+-  --+||+|+.|..+|++|..
T Consensus       110 ~~~-~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~  167 (508)
T PRK00969        110 EEY-EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD  167 (508)
T ss_pred             Ccc-eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence            222 2337888888888777777888887776322111  1799999999999999976

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.13  Score=44.09  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhcCC-CCCCcCCCceeecCCEEEEeecCcE--EEeCCCCCCCCCCCCcccCCCCCCCcc
Q 030245           19 RIVMELFADVTPRTAENFRALCTGE-KGIGKSGKPLHYKGSSFHRVIPGFM--CQGGDFTAGNGTGGESIYGSKFADENF   95 (180)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~g~-~~~~~~~~~~~Y~g~~f~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~~   95 (180)
                      -|.||||.+.||.++..|.++..-. +..|         ...+|-+.++..  +.=|+.          .++..+.+|+.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~~kpVG---------kL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVG---------KLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccccccccc---------ceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence            5899999999999999999876211 1111         234555555521  111221          12334445555


Q ss_pred             ccCCCCceEEEeeecCCCCCCccEEEEcCCC-------CCCCCCccEEEEEEcCHHHHHHHHh
Q 030245           96 VKKHTGPGILSMANAGPGTNGSQFFISAGKT-------EWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus        96 ~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~-------~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      ......+|.|+..|....-.| -.-+-|.++       ..+.+ --++|+|++|.+-|..|..
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             chhheecccccccccchhccc-eeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence            444444555544432110000 111222222       12333 3479999999999988876

>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function

Probab=84.59  E-value=12  Score=26.67  Aligned_cols=47  Identities=17%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             CCceEEEeeecCCCCCCccEEEEcCCCC-------CCCCCccEEEEEEcCHHHHHHHHh
Q 030245          100 TGPGILSMANAGPGTNGSQFFISAGKTE-------WLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus       100 ~~~G~vs~~~~g~~~~~sqFfI~l~~~~-------~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      ...|-|+.-..+.     .|.|-+++.|       .+-....++||+.+|.+.++++..
T Consensus        60 ~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~  113 (120)
T PF04126_consen   60 VEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG  113 (120)
T ss_dssp             B-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred             ccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence            4588888876544     6888887774       344568899999999999888765

; PDB: 2KA0_A 1ZX8_C 2NNZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-63
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-60
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		2e-60
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-60
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		2e-60
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-60
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		3e-60
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-60
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		4e-60
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		8e-60
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		9e-60
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		9e-60
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		1e-59
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-59
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-59
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		3e-59
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-59
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		1e-58
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-58
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-58
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-58
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		3e-57
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-56
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-56
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		9e-56
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-55
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		2e-55
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		5e-53
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		8e-53
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		9e-52
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-50
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-48
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		1e-47
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		5e-47
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-46
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-46
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		2e-45
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		8e-43
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		9e-43
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-42
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		1e-42
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		6e-42
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		7e-42
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		8e-42
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-41
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		7e-40
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-39
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		4e-39
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		6e-39
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		8e-39
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-38
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-38
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		9e-37
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-36
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		7e-23
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		8e-23
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		2e-22
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		2e-22
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		3e-22
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		2e-21
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		2e-21
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		3e-20
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		4e-19
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		3e-18
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		7e-16
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-15
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		7e-14
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		7e-10
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		3e-08
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		6e-07
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		6e-07
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-06
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		1e-05
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		8e-05
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		4e-04

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 133/169 (78%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+  KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FM Q            ESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FG+VVEG++VVKA+E  GS+SG+  K  +IADCG
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 73  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 181

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  227 bits (578), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 61
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 62  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 121
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 122 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 170

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  227 bits (578), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGIL+MANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           H++IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  226 bits (575), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 124/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  225 bits (574), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI 
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  225 bits (574), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 161

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 129/172 (75%), Gaps = 3/172 (1%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NPKVFFD+++  + AGRIVMEL+AD  P+TAENFRALCTGEKG G+SGKPLHYK S F
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVF 64
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKK---HTGPGILSMANAGPGTNGS 117
           HRVIP FM Q            ESIYG+ F DE+F  K   HTG G LSMANAGP TNGS
Sbjct: 65  HRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGS 124
Query: 118 QFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           QFFI    T WLDGKHV FG+V++G++VVK +E++GS SG+T+  +V++DCG
Sbjct: 125 QFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCG 176

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 124/169 (73%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT+WLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 123/169 (72%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+F
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 162

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  223 bits (569), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KTEWLDGKHV FG+V EGMN+V+A+++ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCG 161

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  223 bits (567), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 123/167 (73%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCG 161

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 123/167 (73%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 7   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI 
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 166

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHR
Sbjct: 3   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 55
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFFI 
Sbjct: 56  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 162

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHR
Sbjct: 4   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 56
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFFI 
Sbjct: 57  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 163

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHR
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 54
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 161

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IPGF CQ            +SIYG KF DENF+ KHTGPGILS ANAGP TNGSQFFI 
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KTEWLDGKHV FG+V EG N+V+A E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCG 161

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KVFFD+++    AGRI+ ELF+D+TPRT ENFRALCTGEK IG  GK LHYK S FHR+I
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
           P FMCQ            ESIYG  F DENF  KH  PG+LSMANAGP TN SQFFI+  
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              WLDGKHV FG+V+EGMNVV+ +EK G++SG  K+ VVI DCG
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCG 168

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 122/168 (72%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP V+FD+++G  PAGRI MELFAD  P TAENFRALCTGEKG+G+SGKPL Y GS FHR
Sbjct: 19  NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 63  VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IP FM Q            ESIYGSKF DENFV  H  P +LSMANAGP TNGSQFFI+
Sbjct: 79  IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
                WLDGKHV FG+V+EGM VVK+IEK GS++G+  K V I   G+
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASGV 186

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 119/167 (71%), Gaps = 1/167 (0%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KVFFD+++    AGRI+ ELF+D+TPRT ENFRALCTGEK IG  GK LHYK S FHR+I
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
           P FMCQ            ESIYG  F DENF  KH  PG+LSMANAGP TN SQF I+  
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
              WLDGKHV FG+V+EGMNVV+ +EK G++SG  K+ VVI DCG +
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEW 170

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG G       +KGSSFH
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 54
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           R+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+
Sbjct: 55  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 114
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
           +  KT+WLDGKHV FG+V EG++V++ IE  GS+ G+ K+ V+IADCG Y
Sbjct: 115 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 164

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG G       +KGSSFH
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 62
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           R+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+
Sbjct: 63  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
           +  KT+WLDGKHV FG+V EG++V++ IE  GS+ G+ K+ V+IADCG Y
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NP+V+ D+ +G +PAGRI   L +DV P TAENFR LCT EKG G       +KGSSFH
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFH 63
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           R+IP F CQ            +SIYG KF DENF+ KHTGPG+LS AN+GP TNGSQFF+
Sbjct: 64  RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
           +  KT+WLDGKHV FG+V EG++V++ IE  GS+ G+ K+ V+IADCG Y
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 173

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           P+VFFD+ +G   AGRIVMEL +D+ PRTAENFRALCTGE+G G       Y    FHRV
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRV 63
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
           IP FMCQ            +SIYG KF DENF  +H G G+LSMAN+GP TNGSQFFI  
Sbjct: 64  IPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICT 123
Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
            K +WLDGKHV FG+VV+G NVVK +E +GS+SG+ K+PV+I+ CG
Sbjct: 124 TKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCG 169

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  199 bits (505), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 99/169 (58%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSF 60
           +NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKGIG  +GKPLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAG  TNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I+   T  LDGKHV FGQV++GM V K +E +  +  +  K  VIA+CG
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECG 182

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
            VFFD+T  G P G I  +LF DV P+TA NFRALCTGEKG G       Y GS FHRVI
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
           P FM Q            +SIYG+KFADENF  KH  PG+LSMANAGP TNGSQFFI+  
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
            T WLDGKHV FG+V++GMNVVKAIE  GS SG+ +  + IA CG+
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCGV 161

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 112/165 (67%), Gaps = 7/165 (4%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           +V+FD+   GQP GR+V +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVI
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
           P FM Q            +SIYG KF DENF K H  PG+LSMANAGP TNGSQFFI+  
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
              WLDGKHV FG+VV+G ++VK +E +GS SG TK  +V+A  G
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSG 160

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+   G+P GRI MELF+++ PRTAENFRALCTGEKG G       +K S F
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIF 56
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQF 
Sbjct: 57  HRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I+  K E LD KHV FG V +GM+ VK IE  GS  G   + + I +CG
Sbjct: 117 ITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECG 165

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
            NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FH
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCG 169
           +  K +WLDGKHV FG++++G+ V++ IE + +  + + K PVVI+ CG
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MAN  VFF++++  +P GRIV +L+ +  P+TA+NFR L TG+ G G       YK S F
Sbjct: 3   MAN--VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIF 53
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FM Q            +SIYG KFADENF  KHT PG+LSMANAG  TNGSQFF
Sbjct: 54  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I+   T WLDGKHV FG+V+EG+++V+ +E  GS SG+T   + I DCG
Sbjct: 114 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           MAN  VFF++++  +P GRIV +L+ +  P+TA+NFR L TG+ G G       YK S F
Sbjct: 2   MAN--VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIF 52
Query: 61  HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FM Q            +SIYG KFADENF  KHT PG+LSMANAG  TNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I+   T WLDGKHV FG+V+EG+++V+ +E  GS SG+T   + I DCG
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 111/171 (64%), Gaps = 9/171 (5%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           A+  V+FD+    +  GRIVM+L  D+ P+TA+NFR LC   KG G       YKGS+FH
Sbjct: 26  ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFH 78
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           R+IPGFM Q             SIYG KF DENF  KHT  GILSMAN G  TNGSQFFI
Sbjct: 79  RIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFI 138
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK--PVVIADCGI 170
           + GKT+WLD KHV FG+VVEGM+VV  I K GS SG+ KK   + I DCG+
Sbjct: 139 TLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGV 189

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
           +  P+ FFD+ +  QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 60  FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
           FI+   T  LDG HV FGQV+ G  VV+ IE    ++    KP   V I  CG
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIEN--QKTDAASKPFAEVRILSCG 194

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
           +  P+ FFD+ +  QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 60  FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
           FI+   T  LDG HV FGQV+ G  VV+ IE    ++    KP   V I  CG
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQ--KTDAASKPFAEVRILSCG 177

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
           +  P+ FFD+ +  QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 60  FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
           FI+   T  LDG HV FGQV+ G  VV+ IE    ++    KP   V I  CG
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQ--KTDAASKPFAEVRILSCG 177

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRV 63
           +VF D+T+ G  AGRIVMEL+ D+ PRT  NF  LCTG  G GK SGKPLHYKGS+FHRV
Sbjct: 8   RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
           I  FM Q            ESIYG  F DE FV KH  P ++SMAN GP TNGSQFFI+ 
Sbjct: 68  IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
                L+  HV FG+VV G  VV  IE + + S  R    VVI +CG
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  166 bits (420), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +G +  GR+V+ LF    P+T +NF AL TGEKG G       YK S FHRVI
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGSQFFI+  
Sbjct: 67  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK--KPVVIADCG 169
           KT WLDGKHV FG+V+EGM VV+ +E   +  GR K  K V IADCG
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKT-DGRDKPLKDVTIADCG 172

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +G +  GR+V+ LF    P+T +NF AL TGEKG G       YK S FHRVI
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGSQFFI+  
Sbjct: 67  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK--KPVVIADCG 169
           KT WLDGKHV FG+V+EGM VV+ +E   +  GR K  K V IADCG
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKT-DGRDKPLKDVTIADCG 172

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +G +  GR++  LF    P+T +NF AL TGEKG G       YK S FHRVI
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 59
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGSQFFI+  
Sbjct: 60  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
           KT WLDGKHV FG+V+EGM VV+ +E   + S  +  K V+IADCG
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 165

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +G +  GR++  LF    P+T +NF AL TGEKG G       YK S FHRVI
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 69
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGSQFFI+  
Sbjct: 70  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIE--KMGSRSGRTKKPVVIADCG 169
           KT WLDGKHV FG+V+EGM VV+ +E  K  SR  +  K V+IADCG
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRD-KPLKDVIIADCG 175

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  159 bits (402), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+T+G +P GR+V+ LF +  P+T ENF+ L +GE G G       YKGS FHRVI
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVI 59
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG++F DEN   KH   G +SMANAGP +NGSQFF++  
Sbjct: 60  RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGI 170
            T WLDG+HV FG+VVEGM+VVK +E   +  + + KK V I DCG+
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGV 165

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           +V+FDM +GG+P GRIV+ LF    P+TA NF  L    KG G       Y GS FHRVI
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVI 60
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q             SIYG KFADENF  KH G G LSMANAG  TNGSQFFI+  
Sbjct: 61  ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCG 169
           KT WLDG+HV FG+++EGM+VV+ IE+     G R K+ V+IA  G
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASG 166

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 103/166 (62%), Gaps = 11/166 (6%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KVFFD+ +G +  GRIV+ LF +V P+T ENF AL TGEKG G       YKGS FHRVI
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVI 61
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q             SIYG  F DENF  KH G G +SMANAGP TNGSQFFI+  
Sbjct: 62  KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
           K  WLDGKHV FG+V++GM VV +IE + +  G  +    + DC I
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIE-LQATDGHDRP---LTDCTI 163

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 94/146 (64%), Gaps = 7/146 (4%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KVFFD+ +G +  GRIV+ LF  V P+T ENF AL TGEKG G       YKGS FHRVI
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVI 69
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q             SIYG  F DENF  KH G G +SMANAGP TNGSQFFI+  
Sbjct: 70  KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIE 150
           K  WLDGKHV FG+V++GM VV +IE
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIE 155

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFH 61
           +P+  FD+ +  +P GRI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FH
Sbjct: 19  SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RV+  FM Q            ESIYG  F DENF+ KH    +LSMAN G  TNGSQFFI
Sbjct: 79  RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCGI 170
           +      LDG HV FG V+ G  V++ IE + + +  R    V + DCG+
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 100/166 (60%), Gaps = 9/166 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +  +P GRI + LF    P T ENFR LCTGE G G       YK S FHRVI
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG KFADEN   KH   G LSMANAGP TNGSQFFI+  
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
            T WLDG+HV FG+V++GM+VV  IEK  + S  R  KPV I   G
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 5   KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
           KV+FD+ +  +P GRI + LF    P T ENFR LCTGE G G       YK S FHRVI
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65  PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
             FM Q            +SIYG KFADEN   KH   G LSMANAGP TNGSQFFI+  
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
            T WLDG HV FG+V++GM+VV  IEK  + S  R  KPV I   G
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 5   KVFFDMT-----VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSS 59
           +VFFD+            GRIV  LF    P+TA+NFR LC    G G       Y+ S+
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 60  FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHR+IP FM Q             SIYG KFADENF +KH   GILSMANAGP TNGSQF
Sbjct: 57  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 120 FISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKMGSRSG--RTKKPVVIADCG 169
           FI+   T WLDGKHV FG+V +    +VVK IE +GS SG  R+     I +CG
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NP VF D+ +G    G+   ELF ++ P+T+ENFR  CTGE  +  +  P+ YK + FH
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFH 115
Query: 62  RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVI  FM Q             SIYG KF DENF  KH   G+LSMAN+GP TNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 122 SAGKTEWLDGKHVAFGQVVEG--MNVVKAIEKMGSRS--GRTKKPVVIADCG 169
           +  K EWLDGK+V FG++++   + ++K IE +       + K P+ + +CG
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
            G I +E+F + TP+T ENF ALC             +Y G  FHR I GFM Q      
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 77  XXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
                  SI+G KF DE +   KH   G++SMAN GP TNGSQFFI+ GK   LD K+  
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 136 FGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
           FG+V++G+  +  +EK+    ++ R    V I D  I+
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
            G I +E+F + TP+T ENF ALC             +Y G  FHR I GFM Q      
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 77  XXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
                  SI+G KF DE +   KH   G++SMAN GP TNGSQFFI+ GK   LD K+  
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 136 FGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
           FG+V++G+  +  +EK+    ++ R    V I D  I+
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 161

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           P V+ + ++G      IV+EL+    P+T +NF  L    +G        +Y G+ FHR+
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
           I  FM Q             SIYG +F DE     K TG GIL+MANAGP TNGSQFF++
Sbjct: 57  IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
              T+WLDGKH  FG+V +G+ +V  +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           P V+ + ++G      IV+EL+    P+T +NF  L    +G        +Y G+ FHR+
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
           I  FM Q             SIYG +F DE     K TG GIL+MANAGP TNGSQFF++
Sbjct: 57  IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
              T+WLDGKH  FG+V +G+ +V  +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           P V+ + ++G      IV+EL+    P+T +NF  L    +G        +Y G+ FHR+
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
           I  FM Q             SIYG +F DE     K TG GIL+MANAGP TNGSQFF++
Sbjct: 57  IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
              T+WLDGKH  FG+V +G+ +V  +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 18/159 (11%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G + +EL  D+TP+T ENF  LC          K  +Y G+ FHR I  F+ Q       
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 78  XXXXXESIYGSKFADE---NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHV 134
                ES +G  F DE   N    HTG GILSMAN+GP +N SQFFI+     +LD KH 
Sbjct: 79  GTGG-ESYWGKPFKDEFRPNL--SHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 135 AFGQVVEGMNVVKAIEKMGS--RSGRTKKPVVIADCGIY 171
            FG+VV G +V+ A+E + S  ++ R K+ + I    ++
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 174

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
           PK   D  +     G I  +LF    P+T ENF   C   +         +Y G +FHR+
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRI 66
Query: 64  IPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFFI+
Sbjct: 67  IKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 125
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP 162
              T WLD KH  FG+V +GM VV+ I  +   + +T KP
Sbjct: 126 VVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 164

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGK---SGKPL--HYKGSSFHRVIPGFMCQXX 72
           G I + LF +  P+T  NF  L  G K       SG P    Y G+ FHRVI GFM Q  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 73  XXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK 132
                        +  +F  E    K   P +L+MANAGPGTNGSQFFI+ GKT  L+ +
Sbjct: 93  DPTGTGRGGPGYKFADEFHPELQFDK---PYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 133 HVAFGQVV--EGMNVVKAIEKMGSR-SGRTKKPVVIADCGI 170
           H  FG+V+  E   VV+AI K  +  + R   PVVI    I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G   +EL+   +P+T  NF  LC  E G         Y  + FHRVIP F+ Q       
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPTGT 97
Query: 78  XXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
                +SIYG  F DE N   KHTG GILSM+N GP TN SQFFI+      LDGKH  F
Sbjct: 98  GKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156
Query: 137 GQVVEGMNVVKAIEKMGSRSGRTKKPV 163
            +V + M  ++ I  +  ++  T KP+
Sbjct: 157 ARVSKNMTCIENIASV--QTTATNKPI 181

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G I + LF     +T +NF                 +Y    FHRVI  FM Q       
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 78  XXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
                ESI+G++F DE F    H+ P ++SMAN GP TNGSQFFI+     WLD KH  F
Sbjct: 65  GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 137 GQVVEGMNVVKAIEKMGSRSGRTKKPV 163
           G+V +G  +V  IEK+  R+ +  KP+
Sbjct: 124 GKVTQGSKIVLDIEKV--RTDKRDKPL 148

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
           AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q      
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 77  XXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
                 ESIYG+ F DE   + +    G+++MANAG   NGSQFF + G+ + L+ KH  
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 136 FGQVVEGM--NVVKAIEKMGSRSGRTKKPVVIADCGIYY 172
           FG+V      N+++  E       R   P  I  C + +
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLF 180

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G +  ELF    P+  +NF AL         SG   +YK + FH+ I GF+ Q       
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 78  XXXXXESIYGSKFADENFVK-KHTGPGILSMANAG----PGTNGSQFFISAGKTEWLDGK 132
                ESIYG  F DE + + K+   GILSMA+ G    P TNGSQFFI+      L+G+
Sbjct: 76  GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 133 HVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
           +V FG++++G   +  +E   S +S +    ++I D  I+
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH 174

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G + +EL AD+ PR  ++F  LC  +          ++  + FHR I  FM Q       
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 78  XXXXXESIY-----------GSKFADENFVKK--HTGPGILSMANAGPGTNGSQFFISAG 124
                + +            G+ F DE F  +  H G G+LSMAN G  +N S+FFI+  
Sbjct: 66  QPSKKKEVQQSPRSISGFPGGAPFEDE-FDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKM 152
             E L+ KH  FG+VV G++V++  EK+
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G I ++LFAD  P TA NF              K  HY G+ FHRVI GFM Q       
Sbjct: 9   GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQGGGFEPG 58
Query: 78  XXXXXESIYGSKFADENFV-KKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK--- 132
                        A+     KK+T    ++MA    P +  +QFFI+     +LD     
Sbjct: 59  MKQKSTRAPIKNEANNGLSNKKYT----IAMARTPDPHSASAQFFINVKDNAFLDHTAPT 114
Query: 133 -----HVAFGQVVEGMNVVKAIEKM--GSRSGRTKKPV 163
                +  FG+VVEG +VV  I+ +  GSR+G    PV
Sbjct: 115 AHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPV 152

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGE------KGIGKSGKPLH-- 54
           NP+V+ D+ +  +  GR+ ++LF D  P   ENF  L  G+       G GK     H  
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 55  --YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-------NFVKKHTGPGIL 105
             Y+G  FH V    +               S  G+ + DE       ++   H   G+L
Sbjct: 74  RTYEGCKFHNV----LHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLL 129
Query: 106 SMA----NAGPGTNGSQFFIS------AGKTEWLDGKHVAFGQVVEGMNVVKAIEKM-GS 154
           S+      +G     S F I+      +   + LD   V  GQV  G++V+  I  M   
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189
Query: 155 RSGRTKKPVVIADCGIY 171
            +GR      I  CG Y
Sbjct: 190 YAGRKYPTFSIGKCGAY 206

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
           AG I +EL     P + +NF            SG    Y  ++FHRVIPGFM Q      
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYV-------NSG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 77  XXXXXXESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLD-GK-- 132
                  +      AD          G ++MA  A   +  SQFFI+     +LD G+  
Sbjct: 63  QMQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 133 --HVAFGQVVEGMNVVKAIEK-----MGSRSGRTKKPVVIADCGI 170
             +  FG+VV+GM+V   I +     +G       KPVVI    +
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
           AG I +EL     P + +NF            SG    Y  ++FHRVIPGFM Q      
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 77  XXXXXXESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLD-GK-- 132
                  +      AD          G ++MA  A   +  SQFFI+     +LD G+  
Sbjct: 63  QMQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 133 --HVAFGQVVEGMNVVKAIEK-----MGSRSGRTKKPVVIADCGI 170
             +  FG+VV+GM+V   I +     +G       KPVVI    +
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV 164

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G I +EL     P+T ENF  L   +KG        HY G+ FHRVI GFM Q       
Sbjct: 13  GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQ---GGGF 59
Query: 78  XXXXXESIYGSKFADE--NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK--- 132
                +    +  A+E  N +K  T    ++  N  P +  +QFFI+    E+L+     
Sbjct: 60  EPGLKQKPTDAPIANEANNGLKNDTYTIAMARTN-DPHSATAQFFINVNDNEFLNHSSPT 118
Query: 133 -----HVAFGQVVEGMNVVKAIE--KMGSR 155
                +  FG+VVEG ++V  I+  K GS+
Sbjct: 119 PQGWGYAVFGKVVEGQDIVDKIKAVKTGSK 148

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXX-- 75
           G IV++ F D  P T +NF   C          +   Y  + FHRVI GFM Q       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 76  XXXXXXXESIYGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK-- 132
                  E I      + N   K+T  G L+MA    P +  +QFFI+    ++L+    
Sbjct: 59  MKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 133 ------HVAFGQVVEGMNVVKAIEKMGS-RSG 157
                 +  F +VV+GM+VV  I+ + + RSG
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSG 145

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXX-- 75
           G IV++ F D  P T +NF   C          +   Y  + FHRVI GFM Q       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 76  XXXXXXXESIYGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK-- 132
                  E I      + N   K+T  G L+MA    P +  +QFFI+    ++L+    
Sbjct: 59  MKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 133 ------HVAFGQVVEGMNVVKAIEKMGS-RSG 157
                 +  F +VV+GM+ V  I+ + + RSG
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSG 145

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 26/139 (18%)
Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
           G + +EL+A   P    NF  LC   +G        +Y  + FHRV+  F+ Q       
Sbjct: 31  GDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIFHRVVKDFIVQGGDPTGT 80
Query: 78  XXXXXESIY-GSKFADENFVK-KHTGPGILSMANAGP--------------GTNGSQFFI 121
                ++ + G  F  E   + K    G++ +AN G               GTNG+QFFI
Sbjct: 81  GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFI 140
Query: 122 SAGKTEWLDGKHVAFGQVV 140
           +  + + L+  +  FG+V 
Sbjct: 141 TLARADVLNNAYTLFGKVT 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-133
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-133
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-128
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-125
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-125
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-124
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-124
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-124
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-123
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-123
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-123
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-122
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-121
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-120
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-119
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-117
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-116
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-112
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-73
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-71
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-70
2b71_A	196	Cyclophilin-like protein; structural genomics, str	4e-68
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	5e-68
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	6e-65
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	6e-65
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	6e-64
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-62
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-60
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	5e-57
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	7e-54
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-40
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	1e-39
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	7e-38
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	6e-34

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  368 bits (948), Expect = e-133
 Identities = 116/170 (68%), Positives = 133/170 (78%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             NP V+FD+++G  PAGRI MELFAD  P TAENFRALCTGEKG+G+SGKPL Y GS F
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FM QGGDFT G+GTGGESIYGSKF DENFV  H  P +LSMANAGP TNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
           I+     WLDGKHV FG+V+EGM VVK+IEK GS++G+  K V I   G+
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASGV 186

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  367 bits (946), Expect = e-133
 Identities = 125/169 (73%), Positives = 144/169 (85%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+  KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FM QGGDFT GNGTGGESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FG+VVEG++VVKA+E  GS+SG+  K  +IADCG
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  356 bits (916), Expect = e-128
 Identities = 111/167 (66%), Positives = 128/167 (76%), Gaps = 1/167 (0%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KVFFD+++    AGRI+ ELF+D+TPRT ENFRALCTGEK  G  GK LHYK S FHR
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHR 61

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IP FMCQGGD T GNG+GGESIYG  F DENF  KH  PG+LSMANAGP TN SQFFI+
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
                WLDGKHV FG+V+EGMNVV+ +EK G++SG  K+ VVI DCG
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCG 168

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  348 bits (895), Expect = e-125
 Identities = 97/171 (56%), Positives = 114/171 (66%), Gaps = 2/171 (1%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSS 59
           +  P+ FFD+ +  QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 60  FHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHRV+  FM QGGDF+ GNG GGESIYG  F DE+F  KH    +LSMAN G  TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCG 169
           FI+   T  LDG HV FGQV+ G  VV+ IE   + +  +    V I  CG
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  354 bits (911), Expect = e-125
 Identities = 108/170 (63%), Positives = 129/170 (75%), Gaps = 1/170 (0%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSS 59
            +NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKGIG  +GKPLH+KG  
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 60  FHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHR+I  FM QGGDF+  NGTGGESIYG KF DENF  KH   G+LSMANAG  TNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           FI+   T  LDGKHV FGQV++GM V K +E +  +  +  K  VIA+CG
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECG 182

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  347 bits (893), Expect = e-124
 Identities = 88/171 (51%), Positives = 115/171 (67%), Gaps = 2/171 (1%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSS 59
             +P+  FD+ +  +P GRI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 60  FHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHRV+  FM QGGDF+ GNG GGESIYG  F DENF+ KH    +LSMAN G  TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCG 169
           FI+      LDG HV FG V+ G  V++ IE + + +  R    V + DCG
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  346 bits (891), Expect = e-124
 Identities = 100/169 (59%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFH 61
             +VF D+T+ G  AGRIVMEL+ D+ PRT  NF  LCTG  G GK SGKPLHYKGS+FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVI  FM QGGDFT G+GTGGESIYG  F DE FV KH  P ++SMAN GP TNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
           +      L+  HV FG+VV G  VV  IE + + S  R    VVI +CG
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  345 bits (888), Expect = e-124
 Identities = 117/169 (69%), Positives = 132/169 (78%), Gaps = 7/169 (4%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+F
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQ GDFT  NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 162

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  346 bits (889), Expect = e-124
 Identities = 98/168 (58%), Positives = 125/168 (74%), Gaps = 3/168 (1%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHR
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTFHR 67

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDF  G+GTG  SIY   FADENF  +H+ PG+LSMAN+GP TNG QFFI+
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCG 169
             K +WLDGKHV FG++++G+ V++ IE + +  + + K PVVI+ CG
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  344 bits (885), Expect = e-123
 Identities = 108/169 (63%), Positives = 133/169 (78%), Gaps = 7/169 (4%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
            +NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG G       +KGSSF
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSF 61

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FMCQGGDFT  NGTGG+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           ++  KT+WLDGKHV FG+V EG++V++ IE  GS+ G+ K+ V+IADCG
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCG 170

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  344 bits (885), Expect = e-123
 Identities = 120/169 (71%), Positives = 135/169 (79%), Gaps = 7/169 (4%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M NP VFFD+ V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS F
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFMCQGGDFT  NGTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 73  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 181

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  343 bits (883), Expect = e-123
 Identities = 107/169 (63%), Positives = 128/169 (75%), Gaps = 7/169 (4%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
              P+VFFD+ +G   AGRIVMEL +D+ PRTAENFRALCTGE+G G       Y    F
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVIP FMCQGGDF  G+GTGG+SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF
Sbjct: 61  HRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           I   K +WLDGKHV FG+VV+G NVVK +E +GS+SG+ K+PV+I+ CG
Sbjct: 121 ICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCG 169

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  341 bits (878), Expect = e-122
 Identities = 98/168 (58%), Positives = 121/168 (72%), Gaps = 7/168 (4%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           A   VFF++++  +P GRIV +L+ +  P+TA+NFR L TG+ G G       YK S FH
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFH 53

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVIP FM QGGDFT  NGTGG+SIYG KFADENF  KHT PG+LSMANAG  TNGSQFFI
Sbjct: 54  RVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFI 113

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   T WLDGKHV FG+V+EG+++V+ +E  GS SG+T   + I DCG
Sbjct: 114 TTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  340 bits (874), Expect = e-121
 Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 6/173 (3%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
            +NP VF D+ +G    G+   ELF ++ P+T+ENFR  CTGE  +  +  P+ YK + F
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIF 114

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVI  FM QGGDF   NG+G  SIYG KF DENF  KH   G+LSMAN+GP TNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174

Query: 121 ISAGKTEWLDGKHVAFGQVV--EGMNVVKAIEKMGSRS--GRTKKPVVIADCG 169
           I+  K EWLDGK+V FG+++  + + ++K IE +       + K P+ + +CG
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  336 bits (864), Expect = e-120
 Identities = 104/171 (60%), Positives = 121/171 (70%), Gaps = 9/171 (5%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
            A+  V+FD+    +  GRIVM+L  D+ P+TA+NFR LC   KG G       YKGS+F
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTF 77

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IPGFM QGGD+TA NGTGG SIYG KF DENF  KHT  GILSMAN G  TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK--PVVIADCG 169
           I+ GKT+WLD KHV FG+VVEGM+VV  I K GS SG+ KK   + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  333 bits (857), Expect = e-119
 Identities = 96/168 (57%), Positives = 116/168 (69%), Gaps = 8/168 (4%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KV+FD+ +G +  GR++  LF    P+T +NF AL TGEKG G       YK S FHR
Sbjct: 15  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDFT G+GTGG+SIYG +F DENF  KH GPG +SMANAG  TNGSQFFI+
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
             KT WLDGKHV FG+V+EGM VV+ +E   + S  +  K V+IADCG
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 175

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  327 bits (841), Expect = e-117
 Identities = 96/168 (57%), Positives = 110/168 (65%), Gaps = 9/168 (5%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KV+FD+ +  +P GRI + LF    P T ENFR LCTGE G G       YK S FHR
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHR 63

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDFT  +GTGG+SIYG KFADEN   KH   G LSMANAGP TNGSQFFI+
Sbjct: 64  VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFIT 122

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
              T WLDG+HV FG+V++GM+VV  IEK  + S  R  KPV I   G
Sbjct: 123 TAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  326 bits (837), Expect = e-116
 Identities = 96/177 (54%), Positives = 112/177 (63%), Gaps = 16/177 (9%)

Query: 2   ANPKVFFDMT-----VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYK 56
           +  +VFFD+            GRIV  LF    P+TA+NFR LC    G G       Y+
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YR 53

Query: 57  GSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNG 116
            S+FHR+IP FM QGGDFT GNGTGG SIYG KFADENF +KH   GILSMANAGP TNG
Sbjct: 54  ESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNG 113

Query: 117 SQFFISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKMGSRSG--RTKKPVVIADCG 169
           SQFFI+   T WLDGKHV FG+V +    +VVK IE +GS SG  R+     I +CG
Sbjct: 114 SQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  317 bits (815), Expect = e-112
 Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGE------KGIGKSGK----P 52
           NP+V+ D+ +  +  GR+ ++LF D  P   ENF  L  G+       G GK        
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 53  LHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFAD---ENFVKKHTGPGILSMA- 108
             Y+G  FH V+       GD    NG+   ++Y  +       ++   H   G+LS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 109 ---NAGPGTNGSQFFISAG------KTEWLDGKHVAFGQVVEGMNVVKAIEKM-GSRSGR 158
               +G     S F I+          + LD   V  GQV  G++V+  I  M    +GR
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 159 TKKPVVIADCG 169
                 I  CG
Sbjct: 194 KYPTFSIGKCG 204

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  218 bits (557), Expect = 1e-73
 Identities = 70/171 (40%), Positives = 93/171 (54%), Gaps = 14/171 (8%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
            PK   D  +     G I  +LF    P+T ENF           ++G   +Y G +FHR
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-------RNG---YYNGHTFHR 65

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFI 121
           +I GFM Q GD T G G GGESI+G +F DE +   +H  P  LSMANAG  TNGSQFFI
Sbjct: 66  IIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGI 170
           +   T WLD KH  FG+V +GM VV+ I  +    ++ +  + V I +  +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  212 bits (542), Expect = 1e-71
 Identities = 62/155 (40%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I + LF     +T +NF                 +Y    FHRVI  FM Q GD + G
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-G 63

Query: 78  NGTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
           +GTGGESI+G++F DE F    H+ P ++SMAN GP TNGSQFFI+     WLD KH  F
Sbjct: 64  DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123

Query: 137 GQVVEGMNVVKAIEKMG-SRSGRTKKPVVIADCGI 170
           G+V +G  +V  IEK+   +  +  + + I +  I
Sbjct: 124 GKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 158

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  211 bits (538), Expect = 2e-70
 Identities = 71/170 (41%), Positives = 96/170 (56%), Gaps = 18/170 (10%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
            P V+ + ++G      IV+EL+    P+T +NF  L    +G        +Y G+ FHR
Sbjct: 11  PPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHR 55

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFI 121
           +I  FM QGGD T G G GG SIYG +F DE +   K TG GIL+MANAGP TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGI 170
           +   T+WLDGKH  FG+V +G+ +V  +  + +    R    V I     
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYP 164

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  204 bits (522), Expect = 4e-68
 Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 13/156 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G   +EL+   +P+T  NF  LC  E G         Y  + FHRVIP F+ QGGD T G
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPT-G 96

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            G GG+SIYG  F DE N   KHTG GILSM+N GP TN SQFFI+      LDGKH  F
Sbjct: 97  TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156

Query: 137 GQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
            +V + M  ++ I  + +  + +    + I      
Sbjct: 157 ARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTA 192

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  203 bits (519), Expect = 5e-68
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
            P V+ + ++G      IV+EL+    P+T +NF  L    +G        +Y G+ FHR
Sbjct: 11  PPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHR 55

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFI 121
           +I  FM QGGD T G G GG SIYG +F DE +   K TG GIL+MANAGP TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVI 165
           +   T+WLDGKH  FG+V +G+ +V  +  + +    R    V I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  196 bits (501), Expect = 6e-65
 Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 17/176 (9%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
               ++F         G +  ELF    P+  +NF AL         SG   +YK + FH
Sbjct: 10  GRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS-------ASG---YYKNTIFH 59

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVK-KHTGPGILSMANAG----PGTNG 116
           + I GF+ QGGD T G G GGESIYG  F DE + + K+   GILSMA+ G    P TNG
Sbjct: 60  KNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNG 118

Query: 117 SQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
           SQFFI+      L+G++V FG++++G   +  +E   S +S +    ++I D  I+
Sbjct: 119 SQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH 174

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  195 bits (498), Expect = 6e-65
 Identities = 71/157 (45%), Positives = 92/157 (58%), Gaps = 14/157 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I +E+F + TP+T ENF ALC        S    +Y G  FHR I GFM Q GD T G
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC-------ASN---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            G GG SI+G KF DE +   KH   G++SMAN GP TNGSQFFI+ GK   LD K+  F
Sbjct: 59  TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118

Query: 137 GQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
           G+V++G+  +  +EK+    ++ R    V I D  I+
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  194 bits (495), Expect = 6e-64
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 23/167 (13%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTA- 76
           G + +EL AD+ PR  ++F  LC  +          ++  + FHR I  FM QGG     
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65

Query: 77  ---GNGTGGESIY-------GSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGK 125
                    +S         G+ F DE +    H G G+LSMAN G  +N S+FFI+   
Sbjct: 66  QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125

Query: 126 TEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
            E L+ KH  FG+VV G++V++  EK+ + +  +  KP  + +  ++
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVF 172

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  191 bits (487), Expect = 1e-62
 Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 14/157 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G + +EL  D+TP+T ENF  LC  +K         +Y G+ FHR I  F+ QGGD T G
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH--------YYDGTIFHRSIRNFVIQGGDPT-G 77

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            GTGGES +G  F DE      HTG GILSMAN+GP +N SQFFI+     +LD KH  F
Sbjct: 78  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 137

Query: 137 GQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
           G+VV G +V+ A+E +    ++ R K+ + I    ++
Sbjct: 138 GRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 174

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  185 bits (473), Expect = 1e-60
 Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 16/158 (10%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ QGGD T G
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-------LEA---YYDNTIFHRVVPGFIVQGGDPT-G 82

Query: 78  NGTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
            G+GGESIYG+ F DE F    +    G+++MANAG   NGSQFF + G+ + L+ KH  
Sbjct: 83  TGSGGESIYGAPFKDE-FHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141

Query: 136 FGQVV-EGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
           FG+V  + +  +  + ++      R   P  I  C + 
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  176 bits (448), Expect = 5e-57
 Identities = 73/158 (46%), Positives = 88/158 (55%), Gaps = 15/158 (9%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEK-----GIGKSGKPLHYKGSSFHRVIPGFMCQGG 72
           G I + LF +  P+T  NF  L  G K               Y G+ FHRVI GFM QGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 73  DFTAGNGTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFISAGKTEWLD 130
           D T G G GG    G KFADE F    +   P +L+MANAGPGTNGSQFFI+ GKT  L+
Sbjct: 93  DPT-GTGRGGP---GYKFADE-FHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147

Query: 131 GKHVAFGQVV--EGMNVVKAIEKMGS-RSGRTKKPVVI 165
            +H  FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct: 148 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  169 bits (431), Expect = 7e-54
 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 32/174 (18%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G + +EL+A   P    NF  LC         G   +Y  + FHRV+  F+ QGGD T G
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPT-G 79

Query: 78  NGTGG--ESIYGSKFADENFVK--KHTGPGILSMANAGP--------------GTNGSQF 119
            G GG   +  G  F  E      K    G++ +AN G               GTNG+QF
Sbjct: 80  TGRGGADTTFDGKPFDVE-THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 120 FISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
           FI+  + + L+  +  FG+V    +  +     +   +  R   P  I    + 
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVL 192

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  133 bits (337), Expect = 2e-40
 Identities = 51/177 (28%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
              V           G I +EL     P+T ENF           K G   HY G+ FHR
Sbjct: 3   GSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYV-------KKG---HYDGTIFHR 47

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFI 121
           VI GFM QGG F         +   +  A+E           ++MA    P +  +QFFI
Sbjct: 48  VINGFMIQGGGFE-PGLKQKPT--DAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFI 104

Query: 122 SAGKTEWLDGK--------HVAFGQVVEGMNVVKAIEKM--GSRSGRT---KKPVVI 165
           +    E+L+          +  FG+VVEG ++V  I+ +  GS+          VVI
Sbjct: 105 NVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  131 bits (332), Expect = 1e-39
 Identities = 51/175 (29%), Positives = 71/175 (40%), Gaps = 29/175 (16%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
            +P V    + G      I +EL     P + +NF            SG    Y  ++FH
Sbjct: 3   GDPHVLLTTSAG-----NIELELDKQKAPVSVQNFVDYV-------NSG---FYNNTTFH 47

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFF 120
           RVIPGFM QGG FT       +        +E         G ++MA  A   +  SQFF
Sbjct: 48  RVIPGFMIQGGGFT-EQMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 121 ISAGKTEWLDG-----KHVAFGQVVEGMNVVKAIEKM--GSRSG---RTKKPVVI 165
           I+     +LD       +  FG+VV+GM+V   I ++             KPVVI
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  126 bits (320), Expect = 7e-38
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 27/162 (16%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G IV++ F D  P T +NF   C       + G    Y  + FHRVI GFM QGG F   
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFE-P 57

Query: 78  NGTGGESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLDGK---- 132
                 +       +E         G L+MA    P +  +QFFI+    ++L+      
Sbjct: 58  GMKQKAT--KEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 133 ----HVAFGQVVEGMNVVKAIEKM--GSRSG---RTKKPVVI 165
               +  F +VV+GM+ V  I+ +  G         K+ V+I
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  122 bits (306), Expect = 6e-34
 Identities = 34/188 (18%), Positives = 52/188 (27%), Gaps = 48/188 (25%)

Query: 1   MANPKVFFDMTVGGQP---AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKG 57
                V   + +   P        + L     P TA NF  L   E+          Y G
Sbjct: 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF--------YDG 217

Query: 58  SSFHRVIPGFMCQGGDFTAGNGTG--------------------GESIYGSKFAD----- 92
               R   GF+ Q GD                                YGS   +     
Sbjct: 218 MEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYK 276

Query: 93  ENFVKKHTGPGILSMANAG--PGTNGSQFFI-------SAGKTEWLDGKHVAFGQVVEGM 143
              V      G ++MA       +  SQ F        +   +  LDG++  FG V +  
Sbjct: 277 AQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNE 336

Query: 144 NVVKAIEK 151
           + +  ++ 
Sbjct: 337 DFLADLKV 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	96.3
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	95.2

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=4.2e-58  Score=350.51  Aligned_cols=172  Identities=73%  Similarity=1.244  Sum_probs=164.4

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |.||+||||++++++++|+|+||||++.||+||+||++||++++|.+..++..+|+|+.||||+|+|+|||||+..+++.
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCC
Confidence            89999999999999999999999999999999999999999877766666777999999999999999999999877888


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++|+..|++|+..++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        81 gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~  160 (173)
T 2igv_A           81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPV  160 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|+
T Consensus       161 ~~v~I~~~g~l~  172 (173)
T 2igv_A          161 KDCMIADCGQLK  172 (173)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCEEEEEeEEEc
Confidence            999999999986

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=5.8e-57  Score=345.34  Aligned_cols=170  Identities=58%  Similarity=0.970  Sum_probs=160.2

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcC-CCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~-~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      ||+|||||++++|++|+|+||||++.||+||+||++||+++++.++. ++..+|+|+.||||+|+|+|||||+..+++.+
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            89999999999999999999999999999999999999988776532 34558999999999999999999998788888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      +.++|+..|++|...++|+++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++ +++|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998 68999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|.
T Consensus       166 ~~v~I~~~G~l~  177 (177)
T 1a58_A          166 ADVVILNCGELV  177 (177)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCeEEEEeEEEC
Confidence            999999999984

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=7.4e-57  Score=345.20  Aligned_cols=169  Identities=57%  Similarity=0.979  Sum_probs=160.9

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      ||+|||||++++|++|+|+||||++.||+||+||++||+|+++.+. .++.++|+|+.||||+|+|+||+||+..+++.+
T Consensus         9 ~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   88 (179)
T 2wfi_A            9 RPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRG   88 (179)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCC
Confidence            9999999999999999999999999999999999999999887654 356789999999999999999999998778888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.
T Consensus        89 g~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~  168 (179)
T 2wfi_A           89 GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF  168 (179)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred             CCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 68999


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      ++|+|.+||+|
T Consensus       169 ~~v~I~~~G~l  179 (179)
T 2wfi_A          169 AEVRILSCGEL  179 (179)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeCeeC
Confidence            99999999986

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.3e-56  Score=339.91  Aligned_cols=164  Identities=70%  Similarity=1.194  Sum_probs=155.7

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNG   79 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~   79 (180)
                      |.||+|||||++++|++|+|+||||+++||++|+||++||+|++        ++ |+|+.|||++|+|+||+||+..+++
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g   72 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHRVIPSFMCQAGDFTNHNG   72 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCC--------CccCcCCEEEEEECCCEEEeCCccCCCC
Confidence            88999999999999999999999999999999999999997654        46 9999999999999999999987788


Q ss_pred             CCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCC
Q 030245           80 TGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRT  159 (180)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p  159 (180)
                      .++.++++..+++|...++|.++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|+++++.+++|
T Consensus        73 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P  152 (165)
T 2z6w_A           73 TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRT  152 (165)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCC
T ss_pred             CCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCC
Confidence            88889999999999989999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             CCCeEEeeeeEEe
Q 030245          160 KKPVVIADCGIYY  172 (180)
Q Consensus       160 ~~~i~I~~cg~l~  172 (180)
                      .++|+|.+||+|.
T Consensus       153 ~~~v~I~~~g~l~  165 (165)
T 2z6w_A          153 SKKIVITDCGQLS  165 (165)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCcEEEEEeEEEC
Confidence            9999999999983

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-56  Score=346.48  Aligned_cols=172  Identities=51%  Similarity=0.944  Sum_probs=162.1

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      .||+|||||++++|++|+|+||||++.||+||+||++||+|+++.+. .++.++|+|+.||||+|+|+|||||+..+++.
T Consensus        18 ~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~   97 (192)
T 2he9_A           18 GSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGK   97 (192)
T ss_dssp             -CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCC
Confidence            48999999999999999999999999999999999999999887654 35678999999999999999999999877888


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT  159 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p  159 (180)
                      ++.++|+..|++|+..++|+++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++ +++|
T Consensus        98 gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  177 (192)
T 2he9_A           98 GGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRP  177 (192)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998 6899


Q ss_pred             CCCeEEeeeeEEee
Q 030245          160 KKPVVIADCGIYYY  173 (180)
Q Consensus       160 ~~~i~I~~cg~l~~  173 (180)
                      .++|+|.+||+|.+
T Consensus       178 ~~~v~I~~~g~l~~  191 (192)
T 2he9_A          178 YADVRVIDCGVLAT  191 (192)
T ss_dssp             SSCEEEEEEEECC-
T ss_pred             cCCeEEEEeEEEcc
Confidence            99999999999864

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.9e-56  Score=340.51  Aligned_cols=169  Identities=66%  Similarity=1.144  Sum_probs=158.8

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+||||+++++++.|+|+||||+++||+||+||++||+++ ++++.++..+|+|+.||||+|+|+||+||+..+++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            489999999999999999999999999999999999999765 4444456666999999999999999999998778888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK  161 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~  161 (180)
                      +.++|+..|++|...++|.++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|+++++.+++|.+
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~  160 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             CeEEeeeeEE
Q 030245          162 PVVIADCGIY  171 (180)
Q Consensus       162 ~i~I~~cg~l  171 (180)
                      +|+|.+||+|
T Consensus       161 ~v~I~~cG~l  170 (170)
T 1qng_A          161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeceeC
Confidence            9999999986

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=4.4e-56  Score=336.85  Aligned_cols=163  Identities=60%  Similarity=1.048  Sum_probs=155.7

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      +||+|||||.+++|++|+|+||||++.||+||+||++||+|+++        + |+|+.|||++|+|++|+||+..+++.
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~   72 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG--------FGYKDSIFHRVIPQFMLQGGDFTRHNGT   72 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC--------CcccCCEEEEEECCCeEEeCCCCCCCCC
Confidence            69999999999999999999999999999999999999976544        5 99999999999999999998778889


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++++..+++|...++|.++|+||||+.+|++++|||||++++.++||++|+|||||++|||||++|+++++++++|.
T Consensus        73 gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~  152 (164)
T 3pmp_A           73 GGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN  152 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCS
T ss_pred             CCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|.
T Consensus       153 ~~v~I~~cg~l~  164 (164)
T 3pmp_A          153 ATIKITDCGTVA  164 (164)
T ss_dssp             SCEEEEEEEEC-
T ss_pred             cCEEEEeCeEEC
Confidence            999999999984

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=5.2e-56  Score=338.38  Aligned_cols=164  Identities=65%  Similarity=1.158  Sum_probs=155.7

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNG   79 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~   79 (180)
                      |.||+|||||++++|+.|+|+||||++.||++|+||++||++++|        + |+|+.||||+|+|+|||||+..+++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG--------FGYHNCCFHRVIPQFMCQGGDFVKGDG   79 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC--------ceECCCEEEEEECCCEEEcCCccCCCC
Confidence            569999999999999999999999999999999999999976543        5 9999999999999999999987788


Q ss_pred             CCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCC
Q 030245           80 TGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRT  159 (180)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p  159 (180)
                      .++.++|+..|++|...++|.++|+||||+++|++++|||||+++++++||++|+|||+|++|||||++|+++++++++|
T Consensus        80 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P  159 (172)
T 2cmt_A           80 TGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKV  159 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCC
T ss_pred             CCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEeeeeEEe
Q 030245          160 KKPVVIADCGIYY  172 (180)
Q Consensus       160 ~~~i~I~~cg~l~  172 (180)
                      .++|+|.+||+|.
T Consensus       160 ~~~v~I~~~g~l~  172 (172)
T 2cmt_A          160 KEPVIISRCGELI  172 (172)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCEEEEEeEeEC
Confidence            9999999999984

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=4.3e-56  Score=342.37  Aligned_cols=169  Identities=69%  Similarity=1.156  Sum_probs=160.6

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+||||+++++|+.|+|+||||++.||++|+||++||++++|+++.++..+|+|+.||||+|+|+||+||+..+++.+
T Consensus        18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~g   97 (186)
T 2poy_A           18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTG   97 (186)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCC
Confidence            48999999999999999999999999999999999999998887766677778999999999999999999998778888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK  161 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~  161 (180)
                      +.++|+..|++|+..++|.++|+||||+.+|++++|||||++++.|+||++|+|||+|++|||||++|+++++.+++|.+
T Consensus        98 g~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~  177 (186)
T 2poy_A           98 GESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTK  177 (186)
T ss_dssp             CCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEeeeeE
Q 030245          162 PVVIADCGI  170 (180)
Q Consensus       162 ~i~I~~cg~  170 (180)
                      +|+|.+||+
T Consensus       178 ~v~I~~cG~  186 (186)
T 2poy_A          178 SVCITASGV  186 (186)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEeCCC
Confidence            999999995

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=9.1e-56  Score=337.47  Aligned_cols=164  Identities=66%  Similarity=1.187  Sum_probs=155.9

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNG   79 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~   79 (180)
                      |.||+||||+++++|++|+|+||||++.||++|+||++||+++++        + |+|+.||||+|+|+|||||+..+++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~g   80 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHNG   80 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC--------ceecCCEEEEeeCCCEEEeCCcCCCCC
Confidence            569999999999999999999999999999999999999987544        4 9999999999999999999987788


Q ss_pred             CCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCC
Q 030245           80 TGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRT  159 (180)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p  159 (180)
                      .++.++|+..|++|...++|+++|+||||+.+|++++|||||++++.++||++|+|||+|++|||||++|+++++++++|
T Consensus        81 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P  160 (173)
T 2r99_A           81 TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKP  160 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCC
T ss_pred             CCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEeeeeEEe
Q 030245          160 KKPVVIADCGIYY  172 (180)
Q Consensus       160 ~~~i~I~~cg~l~  172 (180)
                      .++|+|.+||+|.
T Consensus       161 ~~~v~I~~cG~l~  173 (173)
T 2r99_A          161 KQKVIIADCGEYV  173 (173)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCeEEEEeeeEC
Confidence            9999999999974

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=2.5e-55  Score=334.27  Aligned_cols=162  Identities=58%  Similarity=0.958  Sum_probs=154.0

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNG   79 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~   79 (180)
                      |.+|+|||||++++|++|+|+||||+++||++|+||++||+|+++        + |+|+.||||+|+|+||||++..+++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~g   80 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG--------FGYKDSIFHRVIQNFMIQGGDFTNFDG   80 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEECCCEEecCCccCCCC
Confidence            569999999999999999999999999999999999999987554        6 9999999999999999999777788


Q ss_pred             CCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCC
Q 030245           80 TGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGR  158 (180)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~  158 (180)
                      .++.++|+..+++|...++|. +|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|++++++ +++
T Consensus        81 ~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~  159 (172)
T 2haq_A           81 TGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDR  159 (172)
T ss_dssp             SCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGC
T ss_pred             CCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCc
Confidence            888999999999998899999 999999999999999999999999999999999999999999999999999998 569


Q ss_pred             CCCCeEEeeeeEE
Q 030245          159 TKKPVVIADCGIY  171 (180)
Q Consensus       159 p~~~i~I~~cg~l  171 (180)
                      |.++|+|.+||+|
T Consensus       160 P~~~v~I~~~g~l  172 (172)
T 2haq_A          160 PVKPVKIVASGEL  172 (172)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCeEEEEeEEC
Confidence            9999999999986

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=4.5e-55  Score=336.46  Aligned_cols=165  Identities=73%  Similarity=1.259  Sum_probs=156.3

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |.||+||||++++++++|+|+||||++.||++|+||++||++++|++       |+|+.||||+|+|+|||||+..+++.
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~   92 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGT   92 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc-------cCCCEEEEccCCcEEEeCCCCCCCCC
Confidence            56999999999999999999999999999999999999998765421       99999999999999999998878889


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++++..+++|...++|.++|+||||+.+|++++|||||++++.++||++|+|||+|++|||||++|+++++++++|.
T Consensus        93 gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~  172 (184)
T 3rdd_A           93 GGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTS  172 (184)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|+
T Consensus       173 ~~v~I~~cG~l~  184 (184)
T 3rdd_A          173 KKITIADCGQLE  184 (184)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCeEEEeCeEEC
Confidence            999999999984

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.2e-54  Score=336.34  Aligned_cols=165  Identities=62%  Similarity=1.021  Sum_probs=156.4

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |.||+|||||++++|++|+|+||||+++||++|+||++||++++++       .|+|+.||||+|+|+|||||+..+++.
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g~   97 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE-------GYKGSTFHRIIPGFMVQGGDYTAHNGT   97 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS-------SSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC-------cccCCEEEEEeCCCEEEeCCCCCCCCc
Confidence            5699999999999999999999999999999999999999775542       299999999999999999998878888


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      ++.++++..+++|...++|+++|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|+++++++++|.
T Consensus        98 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~  177 (193)
T 3k2c_A           98 GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVK  177 (193)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCC
T ss_pred             CCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --CCeEEeeeeEEe
Q 030245          161 --KPVVIADCGIYY  172 (180)
Q Consensus       161 --~~i~I~~cg~l~  172 (180)
                        ++|+|.+||+|.
T Consensus       178 ~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          178 KGYRIEIRDCGVLG  191 (193)
T ss_dssp             TTCCEEEEEEEECC
T ss_pred             cCccEEEEEceEeC
Confidence              999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=9.8e-55  Score=332.86  Aligned_cols=168  Identities=58%  Similarity=1.060  Sum_probs=156.7

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+||||+++++|+.|+|+||||++.||+||+||++||++..+.  .++..+|+|+.||||+|+|+|||||+..+++.+
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   86 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence            389999999999999999999999999999999999999776432  123445999999999999999999998788888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      +.++|+..|++|...++|+++|+||||+.+|++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|.
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~  166 (177)
T 1mzw_A           87 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  166 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999996 88999


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      ++|+|.+||+|
T Consensus       167 ~~v~I~~cG~l  177 (177)
T 1mzw_A          167 LPVVISQCGEM  177 (177)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeceeC
Confidence            99999999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.9e-54  Score=332.89  Aligned_cols=163  Identities=58%  Similarity=1.003  Sum_probs=154.5

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      +|+|||||++++|++|+|+||||.+.||+||+||++||+|+++        + |+|+.||||+|+|+||||++..+++.+
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   86 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG--------FGYKNSKFHRVIKDFMIQGGDFTRGDGTG   86 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC--------ccccCCEEEEEECCCEEEcCCccCCCCCC
Confidence            6899999999999999999999999999999999999987544        6 999999999999999999977788888


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      +.++|+..|++|...++|+++|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|++++++ +++|.
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~  166 (188)
T 3ich_A           87 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL  166 (188)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeEC
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998 56999


Q ss_pred             CCeEEeeeeEEee
Q 030245          161 KPVVIADCGIYYY  173 (180)
Q Consensus       161 ~~i~I~~cg~l~~  173 (180)
                      ++|+|.+|++|..
T Consensus       167 ~~v~I~~~~~l~~  179 (188)
T 3ich_A          167 KDVIIADCGKIEV  179 (188)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CCEEEEEeEEEec
Confidence            9999999999943

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=8.8e-54  Score=329.90  Aligned_cols=164  Identities=58%  Similarity=0.992  Sum_probs=155.8

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +|+|||||+++++++|+|+||||++.||++|+||++||++++|       .+|+|+.|||++|+|+||||++..+++.++
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g-------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   84 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKG-------FGYKDSKFHRVIKDFMIQGGDFTRGDGTGG   84 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS-------CCSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCC-------CeEcCCEEEEeeCCCeEEECCCCCCCCCCC
Confidence            7899999999999999999999999999999999999976543       169999999999999999999987888999


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK  161 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~  161 (180)
                      .++++..+++|...++|+++|+||||+.++++++|||||++++.++||++|+|||||++|||||++|++++++ +++|.+
T Consensus        85 ~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~  164 (185)
T 4fru_A           85 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLK  164 (185)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             ccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 689999


Q ss_pred             CeEEeeeeEEee
Q 030245          162 PVVIADCGIYYY  173 (180)
Q Consensus       162 ~i~I~~cg~l~~  173 (180)
                      +|+|.+||+|..
T Consensus       165 ~v~I~~~g~l~~  176 (185)
T 4fru_A          165 DVTIADCGKIEV  176 (185)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             CEEEEEceEEec
Confidence            999999999963

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.6e-53  Score=335.45  Aligned_cols=168  Identities=49%  Similarity=0.911  Sum_probs=157.7

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+||||+++++|++|+|+||||++.||+||+||++||++.++.+  ++..+|+|+.||||+|+|+|||||+..+++.+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G  135 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG  135 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence            3899999999999999999999999999999999999998776432  34558999999999999999999998788889


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE--cCHHHHHHHHhCCCCC--C
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV--EGMNVVKAIEKMGSRS--G  157 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~--~  157 (180)
                      +.++|+..|++|+..++|+++|+||||+.+|++++|||||++++.++||++|+|||||+  +|||||++|++++++.  +
T Consensus       136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~  215 (229)
T 1z81_A          136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  215 (229)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999  9999999999999984  8


Q ss_pred             CCCCCeEEeeeeEE
Q 030245          158 RTKKPVVIADCGIY  171 (180)
Q Consensus       158 ~p~~~i~I~~cg~l  171 (180)
                      +|.++|+|.+||+|
T Consensus       216 ~P~~~V~I~~cG~l  229 (229)
T 1z81_A          216 KPKIPINVVECGEL  229 (229)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999986

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2e-52  Score=318.68  Aligned_cols=159  Identities=60%  Similarity=1.056  Sum_probs=121.0

Q ss_pred             EEEEEEEEC--C---EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCcee-ecCCEEEEeecCcEEEeCCCCCCC
Q 030245            5 KVFFDMTVG--G---QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLH-YKGSSFHRVIPGFMCQGGDFTAGN   78 (180)
Q Consensus         5 ~v~~di~~~--~---t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~   78 (180)
                      +|||||+++  +   |++|+|+||||++.||++|+||++||+|+++        + |+|+.||||+|+|+||+|++..++
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~   75 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG--------EGYRESTFHRIIPNFMIQGGDFTRGN   75 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECC-----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEeCCCEEEeCCcCCCC
Confidence            799999998  5   5669999999999999999999999987654        4 999999999999999999976678


Q ss_pred             CCCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEc--CHHHHHHHHhCCCCC
Q 030245           79 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKMGSRS  156 (180)
Q Consensus        79 ~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~~~~  156 (180)
                      +.++.++|+..+++|...++|+++|+||||+.+|++++|||||+++++|+||++|+|||||++  |||||++|++++++.
T Consensus        76 g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~  155 (172)
T 2c3b_A           76 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  155 (172)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCC
Confidence            888889999999999889999999999999999999999999999999999999999999999  999999999999985


Q ss_pred             C--CCCCCeEEeeeeEE
Q 030245          157 G--RTKKPVVIADCGIY  171 (180)
Q Consensus       157 ~--~p~~~i~I~~cg~l  171 (180)
                      +  +|.++|+|.+||+|
T Consensus       156 ~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          156 GSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCccCCCCeEEEeCeeC
Confidence            5  99999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.4e-51  Score=327.31  Aligned_cols=171  Identities=31%  Similarity=0.557  Sum_probs=148.6

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcC---CCc----e--e-ecCCEEEEeecCcEEEe
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS---GKP----L--H-YKGSSFHRVIPGFMCQG   71 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~---~~~----~--~-Y~g~~f~rv~~~~~iq~   71 (180)
                      .||+|||||.+++|++|+|+||||.+.||+||+||++||++++.+..+   ++.    +  + |+|+.||||+|+|+|||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg   92 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS   92 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence            489999999999999999999999999999999999999876221100   011    3  5 99999999999999999


Q ss_pred             CCCCCCCCCCCCcccCCC-----CCCCccccCCCCceEEEeee----cCCCCCCccEEEEcCC------CCCCCCCccEE
Q 030245           72 GDFTAGNGTGGESIYGSK-----FADENFVKKHTGPGILSMAN----AGPGTNGSQFFISAGK------TEWLDGKHVAF  136 (180)
Q Consensus        72 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~G~vs~~~----~g~~~~~sqFfI~l~~------~~~ld~~~~vf  136 (180)
                      ||+..+++.++.++|+..     |+  .+.++|.++|+||||+    .+|++++|||||++++      .++||++|+||
T Consensus        93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF  170 (234)
T 2ose_A           93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI  170 (234)
T ss_dssp             CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred             CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence            997778888888888876     65  4588999999999999    8999999999999999      89999999999


Q ss_pred             EEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEEeeC
Q 030245          137 GQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGIYYYV  174 (180)
Q Consensus       137 G~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l~~~  174 (180)
                      |+|++|||||++|++++++ +++|.++|+|.+|+++.++
T Consensus       171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p  209 (234)
T 2ose_A          171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDS  209 (234)
T ss_dssp             EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCH
T ss_pred             EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCC
Confidence            9999999999999999998 5999999999999999865

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=2.4e-50  Score=339.58  Aligned_cols=172  Identities=63%  Similarity=1.060  Sum_probs=162.7

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcC-CCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~-~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      ||+||||+++++++.|+|+||||++.||+||+||++||+++++.+.. ++..+|+|+.||||+|+|+|||||+..+++++
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998877543 44558999999999999999999998788999


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK  161 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~  161 (180)
                      +.++++..|++|+..++|+++|+|||++.+|+++||||||++++.|+||++|+|||+|++||+||++|++.+++.++|..
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~  174 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAK  174 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESS
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             CeEEeeeeEEeeC
Q 030245          162 PVVIADCGIYYYV  174 (180)
Q Consensus       162 ~i~I~~cg~l~~~  174 (180)
                      +|+|.+|+++.++
T Consensus       175 ~v~I~~~g~l~~~  187 (370)
T 1ihg_A          175 LCVIAECGELKEG  187 (370)
T ss_dssp             CEEEEEEEEECTT
T ss_pred             eEEEEEEEEeccC
Confidence            9999999999754

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3.4e-50  Score=311.47  Aligned_cols=157  Identities=39%  Similarity=0.617  Sum_probs=143.6

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +++|.|+     |++|+|+||||+++||++|+||++||          +.++|+|+.||||+|+|+||||++. +++.++
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~----------~~g~Y~g~~FhRVi~~f~iQgGd~~-~~g~gg  101 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLC----------EMGFYDNTIFHRVIPNFVIQGGDPT-GTGKGG  101 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHh----------hcCCcCCCEEEEEeCCcEEEcCCCC-CCCCCC
Confidence            6788888     89999999999999999999999999          4568999999999999999999986 678888


Q ss_pred             CcccCCCCCCCc-cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           83 ESIYGSKFADEN-FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        83 ~~~~~~~~~~e~-~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      .++++..+++|. ..++|+++|+||||+.+|++++|||||+++++++||++|+|||||++||+||++|++++++ +++|.
T Consensus       102 ~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~  181 (196)
T 2b71_A          102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI  181 (196)
T ss_dssp             CBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBS
T ss_pred             CccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCC
Confidence            889999999996 4789999999999999999999999999999999999999999999999999999999998 68999


Q ss_pred             CCeEEeeeeEEeeCC
Q 030245          161 KPVVIADCGIYYYVG  175 (180)
Q Consensus       161 ~~i~I~~cg~l~~~~  175 (180)
                      ++|+|.+|.++.+|+
T Consensus       182 ~~i~I~~~~i~~dP~  196 (196)
T 2b71_A          182 FDLKILRTSTAVNAD  196 (196)
T ss_dssp             SCCEEEEEEC-----
T ss_pred             CCeEEEEEEEecCCC
Confidence            999999999998874

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=8.7e-50  Score=307.15  Aligned_cols=154  Identities=40%  Similarity=0.627  Sum_probs=141.4

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||+++||++|+||++||          +.++|+|+.||||+|+|+||||++. +++.++.++|+..+++|.
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   91 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALS----------ASGYYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEI   91 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHh----------ccCCCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence            89999999999999999999999999          4568999999999999999999987 677888889999999998


Q ss_pred             -cccCCCCceEEEeeecC----CCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeee
Q 030245           95 -FVKKHTGPGILSMANAG----PGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADC  168 (180)
Q Consensus        95 -~~~~~~~~G~vs~~~~g----~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~c  168 (180)
                       ..++|+++|+||||+.+    |++++|||||+++++++||++|+|||+|++||+||++|++++++ +++|.++|+|.+|
T Consensus        92 ~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~  171 (185)
T 2poe_A           92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI  171 (185)
T ss_dssp             CTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEE
T ss_pred             cCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEE
Confidence             68899999999999999    99999999999999999999999999999999999999999998 6899999999999


Q ss_pred             eEEeeCCCCCC
Q 030245          169 GIYYYVGVSKD  179 (180)
Q Consensus       169 g~l~~~~~~~~  179 (180)
                      +++.+|=.+.|
T Consensus       172 ~i~~dPf~d~~  182 (185)
T 2poe_A          172 VIHSNPIADQE  182 (185)
T ss_dssp             EEECCC-----
T ss_pred             EEECCCCCCcc
Confidence            99987654443

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=5.6e-50  Score=303.62  Aligned_cols=154  Identities=45%  Similarity=0.791  Sum_probs=145.0

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .+++|.|+     |++|+|+||||++.||++|+||++||          +.++|+|+.||||+|+|+|||||+. +++.+
T Consensus        10 ~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   73 (166)
T 2x7k_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA----------RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HHTTTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHH----------hcCCCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            47889998     89999999999999999999999999          5568999999999999999999986 67788


Q ss_pred             CCcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245           82 GESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT  159 (180)
Q Consensus        82 ~~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p  159 (180)
                      +.++++..+++|.. .++|.++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|++++++ +++|
T Consensus        74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  153 (166)
T 2x7k_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCB
T ss_pred             CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            88999999999985 889999999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             CCCeEEeeeeEE
Q 030245          160 KKPVVIADCGIY  171 (180)
Q Consensus       160 ~~~i~I~~cg~l  171 (180)
                      .++|+|.+|.++
T Consensus       154 ~~~i~I~~~~i~  165 (166)
T 2x7k_A          154 VDDVKIIKAYPS  165 (166)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999986

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.5e-49  Score=306.87  Aligned_cols=162  Identities=45%  Similarity=0.718  Sum_probs=144.9

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcC-----CCceeecCCEEEEeecCcEEEeCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-----GKPLHYKGSSFHRVIPGFMCQGGDFT   75 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~-----~~~~~Y~g~~f~rv~~~~~iq~G~~~   75 (180)
                      |.+++|.|+     |+.|+|+||||+++||++|+||++||+|+++....     .+.++|+|+.||||+|+|+|||||+.
T Consensus        21 ~~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           21 LATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CCSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred             CCCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence            346777777     89999999999999999999999999998875321     13579999999999999999999975


Q ss_pred             CCCCCCCCcccCCCCCCCc-cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEc--CHHHHHHHHhC
Q 030245           76 AGNGTGGESIYGSKFADEN-FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKM  152 (180)
Q Consensus        76 ~~~~~~~~~~~~~~~~~e~-~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~  152 (180)
                       +++.++   ++..|++|. ..++|+++|+||||+.+|++++|||||++++.|+||++|+|||||++  ||+||++|+++
T Consensus        96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~  171 (191)
T 1w74_A           96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT  171 (191)
T ss_dssp             -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred             -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence             455554   577899995 58999999999999999999999999999999999999999999999  99999999999


Q ss_pred             CCC-CCCCCCCeEEeeeeEE
Q 030245          153 GSR-SGRTKKPVVIADCGIY  171 (180)
Q Consensus       153 ~~~-~~~p~~~i~I~~cg~l  171 (180)
                      +++ +++|.++|+|.+|+++
T Consensus       172 ~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          172 ATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             CBCTTSCBSSCCEEEEEEEC
T ss_pred             CcCCCCCcCCCeEEEEEEEC
Confidence            997 6899999999999984

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.1e-49  Score=300.93  Aligned_cols=149  Identities=47%  Similarity=0.730  Sum_probs=140.7

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||+++||++|+||++||          +.++|+|+.|||++|+|++|||++. +++.++.++++..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   75 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEY   75 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHh----------hhcccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccccc
Confidence            89999999999999999999999999          4458999999999999999999987 667888889999999998


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-C-CCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-S-GRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~-~~p~~~i~I~~cg~l  171 (180)
                      . .++|+++|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|++++++ + ++|.++|+|.+|.++
T Consensus        76 ~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~  155 (161)
T 2ok3_A           76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             CcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe
Confidence            6 789999999999999999999999999999999999999999999999999999999998 4 899999999999999


Q ss_pred             eeC
Q 030245          172 YYV  174 (180)
Q Consensus       172 ~~~  174 (180)
                      .+|
T Consensus       156 ~~P  158 (161)
T 2ok3_A          156 ANP  158 (161)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            865

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.6e-49  Score=306.61  Aligned_cols=150  Identities=47%  Similarity=0.746  Sum_probs=141.3

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||+++||++|+||++||          +.++|+|+.||||+|+|+|||||+. +++.++.++++..|++|.
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~----------~~g~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~   94 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   94 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence            88999999999999999999999999          4568999999999999999999986 678888899999999995


Q ss_pred             -cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC--CCCCCCeEEeeeeEE
Q 030245           95 -FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS--GRTKKPVVIADCGIY  171 (180)
Q Consensus        95 -~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~--~~p~~~i~I~~cg~l  171 (180)
                       ..++|+++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|++++++.  ++|.++|+|.+|+++
T Consensus        95 ~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~  174 (197)
T 1zkc_A           95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  174 (197)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             CcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence             68899999999999999999999999999999999999999999999999999999999984  899999999999999


Q ss_pred             eeCC
Q 030245          172 YYVG  175 (180)
Q Consensus       172 ~~~~  175 (180)
                      .+|-
T Consensus       175 ~dPf  178 (197)
T 1zkc_A          175 VDPY  178 (197)
T ss_dssp             ECTT
T ss_pred             cCCc
Confidence            8763

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.8e-49  Score=299.17  Aligned_cols=153  Identities=41%  Similarity=0.642  Sum_probs=143.0

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      .+.|.|+     |+.|+|+||||+++||++|+||++||          +.++|+|+.|||++|+|+||||++. +++.++
T Consensus         5 ~~~v~~~-----T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg   68 (160)
T 2fu0_A            5 PKSAIIY-----TTMGDIHISLFYKECKKTVQNFSVHS----------INGYYNNCIFHRVIKHFMVQTGDPS-GDGTGG   68 (160)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHh----------ccCccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence            4566666     89999999999999999999999999          5568999999999999999999985 677888


Q ss_pred             CcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           83 ESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      .++|+..+++|.. .++|.++|+||||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.
T Consensus        69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~  148 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL  148 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcC
Confidence            8899999999988 689999999999999999999999999999999999999999999999999999999998 78999


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      ++|+|.+|.++
T Consensus       149 ~~v~I~~~~v~  159 (160)
T 2fu0_A          149 EDIKILNIKIN  159 (160)
T ss_dssp             SCCBEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            99999999986

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3e-49  Score=307.29  Aligned_cols=157  Identities=45%  Similarity=0.752  Sum_probs=146.9

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .+++|.|+     |++|+|+||||+++||++|+||++||          +.++|+++.||||+|+|+||+|++. +++.+
T Consensus        10 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~----------~~g~Ydg~~FhRVi~~F~iQgGd~~-~~g~g   73 (203)
T 2k7n_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA----------RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (203)
T ss_dssp             CCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHH----------HHTCGGGCEEEEEETTTEEEEECSS-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHH----------hcCccCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            47899998     88999999999999999999999999          5568999999999999999999986 56778


Q ss_pred             CCcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245           82 GESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT  159 (180)
Q Consensus        82 ~~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p  159 (180)
                      +.++++..|++|.. .++|.++|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|++++++ +++|
T Consensus        74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P  153 (203)
T 2k7n_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (203)
T ss_dssp             CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEE
T ss_pred             CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            88899999999985 889999999999999999999999999999999999999999999999999999999988 6899


Q ss_pred             CCCeEEeeeeEEeeC
Q 030245          160 KKPVVIADCGIYYYV  174 (180)
Q Consensus       160 ~~~i~I~~cg~l~~~  174 (180)
                      .++|+|.+|+++...
T Consensus       154 ~~~V~I~~~~v~~~~  168 (203)
T 2k7n_A          154 VDDVKIIKAYPSGGG  168 (203)
T ss_dssp             CCCCBEEEEEECCCC
T ss_pred             CCCeEEEEEEEEecC
Confidence            999999999998753

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=5.1e-49  Score=306.73  Aligned_cols=157  Identities=33%  Similarity=0.509  Sum_probs=139.1

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeC-----CCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGG-----DFTAG   77 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G-----~~~~~   77 (180)
                      +.+|.|+     |+.|+|+||||+++||+||+||++||          +.++|+|+.||||+|+|+||||     |+. +
T Consensus         6 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~   69 (201)
T 3bo7_A            6 KGYLRIV-----TTQGSLNIELHADMAPRACDSFLRLC----------AVKYFDDTIFHRCIRNFMIQGGRAELRQPS-K   69 (201)
T ss_dssp             CEEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBEEEEETTTEEEECCGGGCCC---
T ss_pred             ceEEEEE-----eCCCCEEEEEcCCCCcHHHHHHHHHH----------hcCccCCCEEEEeeCCCEEEcCcccccCCC-C
Confidence            4455565     88999999999999999999999999          4568999999999999999999     876 5


Q ss_pred             CCCCCCccc-------CCCCCCCc-cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHH
Q 030245           78 NGTGGESIY-------GSKFADEN-FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAI  149 (180)
Q Consensus        78 ~~~~~~~~~-------~~~~~~e~-~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I  149 (180)
                      ++.++.++|       +..|++|. ..++|+++|+||||+++|++++|||||+++++++||++|+|||+|++|||||++|
T Consensus        70 ~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I  149 (201)
T 3bo7_A           70 KKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQW  149 (201)
T ss_dssp             -----CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             CCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHH
Confidence            677788888       78899995 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCC-CCCCCCCeEEeeeeEEeeCC
Q 030245          150 EKMGSR-SGRTKKPVVIADCGIYYYVG  175 (180)
Q Consensus       150 ~~~~~~-~~~p~~~i~I~~cg~l~~~~  175 (180)
                      ++++++ +++|.++|+|.+|+++.+|=
T Consensus       150 ~~~~t~~~~~P~~~i~I~~~~v~~dPf  176 (201)
T 3bo7_A          150 EKLETDKKDKPLKPPKVEEIIVFKNPF  176 (201)
T ss_dssp             TTCCBCTTSCBSSCCBEEEEEEEECCC
T ss_pred             HhCCcCCCCCcCCCeEEEEEEEEcCCc
Confidence            999998 68999999999999998763

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1e-48  Score=299.07  Aligned_cols=146  Identities=45%  Similarity=0.731  Sum_probs=138.0

Q ss_pred             CEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCC
Q 030245           14 GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADE   93 (180)
Q Consensus        14 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (180)
                      .|++|+|+||||+++||++|+||++||          +.++|+|+.||||+|+|+|||||+. +++.++.++|+..+++|
T Consensus        27 ~t~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   95 (176)
T 2a2n_A           27 HTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDE   95 (176)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             EecCccEEEEEeCCCChHHHHHHHHHh----------hcCccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCccccc
Confidence            389999999999999999999999999          4568999999999999999999986 67788889999999999


Q ss_pred             cc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeeeeE
Q 030245           94 NF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADCGI  170 (180)
Q Consensus        94 ~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~cg~  170 (180)
                      .. .++|.++|+||||+.+|++++|||||+++++++||++|+|||||++|||||++|++++++  +++|.++|+|.+|.+
T Consensus        96 ~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A           96 FHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             CCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            88 689999999999999999999999999999999999999999999999999999999998  789999999999976

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=7.2e-48  Score=296.33  Aligned_cols=155  Identities=41%  Similarity=0.741  Sum_probs=143.1

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +++|+|+     |++|+|+||||+++||++|+||++||          +.++|+|+.||||+|+|+||||++. +++.++
T Consensus        24 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   87 (185)
T 2hq6_A           24 NGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLC----------LEAYYDNTIFHRVVPGFIVQGGDPT-GTGSGG   87 (185)
T ss_dssp             BCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH----------HTTTTTTEECCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHh----------hcCccCCCEEEEEECCCEEEcCCCC-CCCCCC
Confidence            6789998     78999999999999999999999999          4568999999999999999999986 677888


Q ss_pred             CcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHH--HHHHhCCCC-CCC
Q 030245           83 ESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVV--KAIEKMGSR-SGR  158 (180)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl--~~I~~~~~~-~~~  158 (180)
                      .++|+..+++|.. .++|+++|+||||+.++++++|||||+++++++||++|+|||||+ ||+++  ++|++++++ +++
T Consensus        88 ~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~  166 (185)
T 2hq6_A           88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDER  166 (185)
T ss_dssp             CCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSC
T ss_pred             CcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCC
Confidence            8899999999986 688999999999999999999999999999999999999999999 88764  688888886 789


Q ss_pred             CCCCeEEeeeeEEeeC
Q 030245          159 TKKPVVIADCGIYYYV  174 (180)
Q Consensus       159 p~~~i~I~~cg~l~~~  174 (180)
                      |.++|+|.+|+++.+|
T Consensus       167 P~~~v~I~~~~v~~~P  182 (185)
T 2hq6_A          167 PHNPHKIKSCEVLFNP  182 (185)
T ss_dssp             BSSCCEEEEEEEEECT
T ss_pred             CCCCeEEEEEEEeCCC
Confidence            9999999999999865

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.1e-47  Score=291.26  Aligned_cols=152  Identities=32%  Similarity=0.538  Sum_probs=136.2

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+|+|+     |++|+|+||||+++||+||+||++||          +.++|+|+.||||+|+|+||||++....+  
T Consensus         3 ~~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--   65 (166)
T 1v9t_A            3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--   65 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBEEEEETTTEEEESSBCTTCC--
T ss_pred             CCeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHh----------ccCCCCCCEEEEEECCcEEEcCCcCcCCC--
Confidence            48999999     89999999999999999999999999          55689999999999999999999864322  


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeec-CCCCCCccEEEEcCCCCCCCCC-----ccEEEEEEcCHHHHHHHHhCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK-----HVAFGQVVEGMNVVKAIEKMGSR  155 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~-g~~~~~sqFfI~l~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~  155 (180)
                       ...++.++++|.....++.+|+||||+. +|++++|||||++++.++||++     |+|||+|++|||||++|++++++
T Consensus        66 -~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~  144 (166)
T 1v9t_A           66 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             -BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             -CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCC
Confidence             2234677888887655667999999997 6999999999999999999998     99999999999999999999987


Q ss_pred             C-----CCCCCCeEEeeeeEE
Q 030245          156 S-----GRTKKPVVIADCGIY  171 (180)
Q Consensus       156 ~-----~~p~~~i~I~~cg~l  171 (180)
                      .     ++|.++|+|.+|.++
T Consensus       145 ~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          145 DVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EETTEEEEESSCCBEEEEEEC
T ss_pred             CCCccCCCcCCCeEEEEEEEe
Confidence            3     689999999999986

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=6.8e-47  Score=287.32  Aligned_cols=152  Identities=33%  Similarity=0.495  Sum_probs=134.9

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      ++|+|.|+     |++|+|+||||+++||+||+||++||          +.++|+|+.||||+|+|+||||++....+  
T Consensus         2 p~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--   64 (167)
T 3s6m_A            2 PGSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYV----------KKGHYDGTIFHRVINGFMIQGGGFEPGLK--   64 (167)
T ss_dssp             CCCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HHTTTTTEECCEEETTTEEEESSEETTTE--
T ss_pred             CCcEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHh----------hhcccCCCEeEEecCCcEEEeccccCCCC--
Confidence            58899998     99999999999999999999999999          55689999999999999999999864322  


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeee-cCCCCCCccEEEEcCCCCCCCCC--------ccEEEEEEcCHHHHHHHHhC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMAN-AGPGTNGSQFFISAGKTEWLDGK--------HVAFGQVVEGMNVVKAIEKM  152 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~-~g~~~~~sqFfI~l~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~  152 (180)
                       ...++..+++|.....++.+|+||||+ .+|++++|||||++.++++||++        |+|||+|++|||||++|+++
T Consensus        65 -~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~  143 (167)
T 3s6m_A           65 -QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAV  143 (167)
T ss_dssp             -ECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTS
T ss_pred             -CCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcC
Confidence             234466788887644445799999999 67999999999999999999998        99999999999999999999


Q ss_pred             CCCC-----CCCCCCeEEeeeeEE
Q 030245          153 GSRS-----GRTKKPVVIADCGIY  171 (180)
Q Consensus       153 ~~~~-----~~p~~~i~I~~cg~l  171 (180)
                      +++.     ++|.++|+|.+|.+|
T Consensus       144 ~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          144 KTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             CBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CcCCCcccCCCcCCCeEEEEEEEC
Confidence            9874     799999999999885

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=6.4e-47  Score=286.58  Aligned_cols=143  Identities=32%  Similarity=0.544  Sum_probs=129.5

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||+++||+||+||++||          +.++|+|+.||||+|+|+||||++..+.   +.+.++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~   72 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccc
Confidence            89999999999999999999999999          5568999999999999999999986432   3456788899998


Q ss_pred             cc-cCCCCceEEEeeec-CCCCCCccEEEEcCCCCCCCCC--------ccEEEEEEcCHHHHHHHHhCCCCC-----CCC
Q 030245           95 FV-KKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK--------HVAFGQVVEGMNVVKAIEKMGSRS-----GRT  159 (180)
Q Consensus        95 ~~-~~~~~~G~vs~~~~-g~~~~~sqFfI~l~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p  159 (180)
                      .. ++| .+|+||||+. +|++++|||||+++++++||++        |+|||+|++|||||++|++++++.     ++|
T Consensus        73 ~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P  151 (164)
T 1lop_A           73 NNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             cccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence            74 555 6999999975 7999999999999999999998        999999999999999999999873     799


Q ss_pred             CCCeEEeeeeEE
Q 030245          160 KKPVVIADCGIY  171 (180)
Q Consensus       160 ~~~i~I~~cg~l  171 (180)
                      .++|+|.+|+++
T Consensus       152 ~~~v~I~~~~v~  163 (164)
T 1lop_A          152 KEDVIIESVTVS  163 (164)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999987

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.1e-46  Score=297.07  Aligned_cols=155  Identities=32%  Similarity=0.554  Sum_probs=141.7

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +++|+|+     |++|+|+||||++.||++|+||++||          +.+||+|+.||||+|+|+||||++. +++.++
T Consensus        21 ~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~----------~~g~Ydgt~FhRVi~~FmiQgGdp~-~~G~Gg   84 (232)
T 3bkp_A           21 RGKVVLH-----TSLGDLDVELWARECPLACRNFVQLC----------LEGYYVNTIFHRVVKDFIVQGGDPT-GTGRGG   84 (232)
T ss_dssp             BCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH----------HHTTTTTCBEEEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHh----------hcCccCCCEEEEEeCCCEEEcCCCC-CCCCCC
Confidence            5788888     88999999999999999999999999          4568999999999999999999987 678888


Q ss_pred             Cccc--CCCCCCCcc-ccCCCCceEEEeeecCC--------------CCCCccEEEEcCCCCCCCCCccEEEEEEcCHHH
Q 030245           83 ESIY--GSKFADENF-VKKHTGPGILSMANAGP--------------GTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNV  145 (180)
Q Consensus        83 ~~~~--~~~~~~e~~-~~~~~~~G~vs~~~~g~--------------~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~v  145 (180)
                      .+++  +..|++|.. .++|+.+|+||||+.++              ++++|||||+++++++||++|+|||+|+ ||++
T Consensus        85 ~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v  163 (232)
T 3bkp_A           85 ADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTL  163 (232)
T ss_dssp             CCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGH
T ss_pred             CccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCch
Confidence            8888  888999986 78899999999999987              6999999999999999999999999999 7765


Q ss_pred             --HHHHHhCCCC-CCCCCCCeEEeeeeEEeeC
Q 030245          146 --VKAIEKMGSR-SGRTKKPVVIADCGIYYYV  174 (180)
Q Consensus       146 --l~~I~~~~~~-~~~p~~~i~I~~cg~l~~~  174 (180)
                        |++|++++++ +++|.++|+|.+|+++.+|
T Consensus       164 ~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dP  195 (232)
T 3bkp_A          164 YNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNP  195 (232)
T ss_dssp             HHHHHHTTSCBCGGGCBSSCCBEEEEEEEECC
T ss_pred             HHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCC
Confidence              8999999997 7899999999999999976

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=3.4e-39  Score=269.45  Aligned_cols=137  Identities=24%  Similarity=0.356  Sum_probs=116.8

Q ss_pred             CcEEEEEEEECC---EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCC
Q 030245            3 NPKVFFDMTVGG---QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNG   79 (180)
Q Consensus         3 ~p~v~~di~~~~---t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~   79 (180)
                      ++.|.|++.+.+   ++.|+|+|+||++.||+||+||++||          +.+||+|+.|||+ |+|+|||||+.. ++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~----------~~GfYdGt~FHRV-~gFmIQgGDp~g-~G  237 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV----------ERHFYDGMEIQRS-DGFVVQTGDPEG-PA  237 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHH----------HTTTTTTEECEEE-EEEEECCCCCCC-CC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHh----------hcCCcCCCeeeee-CCeeEecCCCCC-CC
Confidence            456667665443   36899999999999999999999999          5678999999999 999999999863 43


Q ss_pred             CC---------------------CCcccCCCCCCCc-----cccCCCCceEEEeeec--CCCCCCccEEEEc-------C
Q 030245           80 TG---------------------GESIYGSKFADEN-----FVKKHTGPGILSMANA--GPGTNGSQFFISA-------G  124 (180)
Q Consensus        80 ~~---------------------~~~~~~~~~~~e~-----~~~~~~~~G~vs~~~~--g~~~~~sqFfI~l-------~  124 (180)
                      .+                     +.++|+..+++|.     ..++|+++|+||||++  +||+++|||||++       +
T Consensus       238 ~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~  317 (369)
T 3rfy_A          238 EGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPS  317 (369)
T ss_dssp             SCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSC
T ss_pred             CCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCC
Confidence            33                     3455666677664     3788999999999998  8999999999999       4


Q ss_pred             CCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245          125 KTEWLDGKHVAFGQVVEGMNVVKAIEK  151 (180)
Q Consensus       125 ~~~~ld~~~~vfG~Vi~G~~vl~~I~~  151 (180)
                      +.++||++|+|||+|++|||||++|++
T Consensus       318 ~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          318 NSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            689999999999999999999999998

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=96.30  E-value=0.062  Score=40.24  Aligned_cols=119  Identities=19%  Similarity=0.248  Sum_probs=67.0

Q ss_pred             EEEEEEECCEEeE-EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecC--cEEEeCCCCCCCCCCC
Q 030245            6 VFFDMTVGGQPAG-RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG--FMCQGGDFTAGNGTGG   82 (180)
Q Consensus         6 v~~di~~~~t~~G-~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~--~~iq~G~~~~~~~~~~   82 (180)
                      .|++|++..  .| +++.+|..+.||+||+.|.++-             =|.+..+|-..-+  .|+-.++...      
T Consensus        22 r~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~L-------------P~~~~viHarwSGeeVy~~lp~f~~------   80 (188)
T 3kop_A           22 RYINITLEK--RGVTCKALLLDDVAPRTSKAVWDAL-------------PQSSQVFHGKYARNEIYNLVPAFAP------   80 (188)
T ss_dssp             CEEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHC-------------CEEEECEECSSSSSEEEEEEECCSS------
T ss_pred             eEEEEEEec--CCeEEEEEEccccChHHHHHHHHhC-------------CCCcceEEEEEecceEEEECCcccc------
Confidence            467776653  23 4889999999999999999976             1333333333322  2222222110      


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeec-----C-------------CCCCCccEEEEcCCCCC-CCCC-----ccEEEE
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANA-----G-------------PGTNGSQFFISAGKTEW-LDGK-----HVAFGQ  138 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~-----g-------------~~~~~sqFfI~l~~~~~-ld~~-----~~vfG~  138 (180)
                           .....|+...... +|-|++-.-     |             ..+...++.|-.+.+.. +.++     -.+|++
T Consensus        81 -----~~~g~EN~T~~P~-pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~T  154 (188)
T 3kop_A           81 -----KEPGAENTTVTPI-PGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFAT  154 (188)
T ss_dssp             -----SCCCSCSEESSCC-TTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEE
T ss_pred             -----cCCCcCCCCCCCC-CCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEE
Confidence                 1233444444333 787876310     1             01122466666665442 2221     357999


Q ss_pred             EEcCHHHHHHHHh
Q 030245          139 VVEGMNVVKAIEK  151 (180)
Q Consensus       139 Vi~G~~vl~~I~~  151 (180)
                      |++|+|-|.++.+
T Consensus       155 IveGle~la~~c~  167 (188)
T 3kop_A          155 IVEGLDEMAAACQ  167 (188)
T ss_dssp             EEESHHHHHHHHH
T ss_pred             EecCHHHHHHHHH
Confidence            9999998877765

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=95.20  E-value=0.051  Score=39.75  Aligned_cols=104  Identities=18%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             EEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccC
Q 030245            8 FDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYG   87 (180)
Q Consensus         8 ~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~   87 (180)
                      +.|.+++   ..+.++|+.+.||+||+.|+++-=             +... +.+. .+- +-+ +..            
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------------l~~~-~~~~-g~E-~y~-~lp------------   79 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALP-------------IKST-ANRW-GDE-IYF-TTQ------------   79 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------------EEEE-EEEE-TTE-EEE-CCS------------
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------------cEEE-HHhh-CCc-EEE-ECC------------
Confidence            4555666   569999999999999999999861             1111 1121 110 100 000            


Q ss_pred             CCCCC-CccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCC------CCccEEEEEEcCHHHHHHH
Q 030245           88 SKFAD-ENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLD------GKHVAFGQVVEGMNVVKAI  149 (180)
Q Consensus        88 ~~~~~-e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld------~~~~vfG~Vi~G~~vl~~I  149 (180)
                      ..+.. |+. .....+|-|++-..+.     .+.|-.++.|...      ..-.+||+|.+|++.|.++
T Consensus        80 ~~l~~~en~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~  142 (153)
T 2nnz_A           80 VAVEKEENS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV  142 (153)
T ss_dssp             CCCCCSSCC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred             CCCCCCCCC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence            01111 222 2234588888876543     4888787774322      2247899999998776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	9e-67
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-62
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-62
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	3e-62
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	2e-61
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-56
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	5e-56
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-53
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	3e-52
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-51
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	9e-51
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	5e-49
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	2e-44
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	8e-43
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-38
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	6e-38
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	9e-35
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	4e-30
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-30
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-29
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	6e-29

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  199 bits (507), Expect = 9e-67
 Identities = 125/169 (73%), Positives = 144/169 (85%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
           M+  KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HR+IP FM QGGDFT GNGTGGESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
           +   KTEWLDGKHV FG+VVEG++VVKA+E  GS+SG+  K  +IADCG
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  188 bits (479), Expect = 1e-62
 Identities = 111/167 (66%), Positives = 125/167 (74%), Gaps = 7/167 (4%)

Query: 4   PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
             VFFD+T  G P G I  +LF DV P+TA NFRALCTGEKG G       Y GS FHRV
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRV 54

Query: 64  IPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
           IP FM QGGDFTAGNGTGG+SIYG+KFADENF  KH  PG+LSMANAGP TNGSQFFI+ 
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITT 114

Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
             T WLDGKHV FG+V++GMNVVKAIE  GS SG+ +  + IA CG+
Sbjct: 115 VVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCGV 161

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  188 bits (478), Expect = 2e-62
 Identities = 110/167 (65%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KVFFD+++    AGRI+ ELF+D+TPRT ENFRALCTGEK     GK LHYK S FHR
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHR 61

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IP FMCQGGD T GNG+GGESIYG  F DENF  KH  PG+LSMANAGP TN SQFFI+
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
                WLDGKHV FG+V+EGMNVV+ +EK G++SG  K+ VVI DCG
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCG 168

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  188 bits (479), Expect = 3e-62
 Identities = 108/171 (63%), Positives = 129/171 (75%), Gaps = 1/171 (0%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSS 59
            +NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKGIG  +GKPLH+KG  
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 60  FHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
           FHR+I  FM QGGDF+  NGTGGESIYG KF DENF  KH   G+LSMANAG  TNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
           FI+   T  LDGKHV FGQV++GM V K +E +  +  +  K  VIA+CG 
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGE 182

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  186 bits (472), Expect = 2e-61
 Identities = 100/169 (59%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFH 61
             +VF D+T+ G  AGRIVMEL+ D+ PRT  NF  LCTG  G GK SGKPLHYKGS+FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVI  FM QGGDFT G+GTGGESIYG  F DE FV KH  P ++SMAN GP TNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
           +      L+  HV FG+VV G  VV  IE + + S  R    VVI +CG
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 171

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (437), Expect = 3e-56
 Identities = 115/167 (68%), Positives = 130/167 (77%), Gaps = 7/167 (4%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP V+ D+   G+P GR+V+EL ADV P+TAENFRALCTGEKG         YKGS+FHR
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF-------GYKGSTFHR 54

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VIP FMCQ GDFT  NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG V+EGM+VVK IE  GS+SGRT K +VI DCG
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 161

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  171 bits (435), Expect = 5e-56
 Identities = 107/167 (64%), Positives = 131/167 (78%), Gaps = 7/167 (4%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG         +KGSSFHR
Sbjct: 1   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHR 53

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +IP FMCQGGDFT  NGTGG+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF++
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
             KT+WLDGKHV FG+V EG++V++ IE  GS+ G+ K+ V+IADCG
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCG 160

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  166 bits (421), Expect = 1e-53
 Identities = 98/170 (57%), Positives = 125/170 (73%), Gaps = 3/170 (1%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
             NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+F
Sbjct: 4   PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTF 61

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
           HRVI  FM QGGDF  G+GTG  SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF
Sbjct: 62  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 121

Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCG 169
           I+  K +WLDGKHV FG++++G+ V++ IE + +  + + K PVVI+ CG
Sbjct: 122 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 171

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  163 bits (413), Expect = 3e-52
 Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 6/172 (3%)

Query: 2   ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
           +NP VF D+ +G    G+   ELF ++ P+T+ENFR  CTG      +  P+ YK + FH
Sbjct: 15  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG--EYKVNNLPVGYKNTIFH 72

Query: 62  RVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
           RVI  FM QGGDF   NG+G  SIYG KF DENF  KH   G+LSMAN+GP TNG QFFI
Sbjct: 73  RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 132

Query: 122 SAGKTEWLDGKHVAFGQVVEG--MNVVKAIEKM--GSRSGRTKKPVVIADCG 169
           +  K EWLDGK+V FG++++   + ++K IE +       + K P+ + +CG
Sbjct: 133 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 184

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  161 bits (407), Expect = 2e-51
 Identities = 97/168 (57%), Positives = 114/168 (67%), Gaps = 8/168 (4%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             +V+FDM +GG+P GRIV+ LF    P+TA NF  L    KG G       Y GS FHR
Sbjct: 6   TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHR 58

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDFT G+GTGG SIYG KFADENF  KH G G LSMANAG  TNGSQFFI+
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCG 169
             KT WLDG+HV FG+++EGM+VV+ IE+     G R K+ V+IA  G
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASG 166

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  159 bits (403), Expect = 9e-51
 Identities = 96/168 (57%), Positives = 110/168 (65%), Gaps = 8/168 (4%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KVFFD+ +G +  GRIV+ LF +V P+T ENF AL TGEKG G       YKGS FHR
Sbjct: 7   TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHR 59

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDFTA +GTGG SIYG  F DENF  KH G G +SMANAGP TNGSQFFI+
Sbjct: 60  VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 119

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMG-SRSGRTKKPVVIADCG 169
             K  WLDGKHV FG+V++GM VV +IE        R      I + G
Sbjct: 120 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSG 167

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  156 bits (395), Expect = 1e-49
 Identities = 95/175 (54%), Positives = 110/175 (62%), Gaps = 16/175 (9%)

Query: 4   PKVFFDMT-----VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGS 58
            +VFFD+            GRIV  LF    P+TA+NFR LC    G         Y+ S
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRES 54

Query: 59  SFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQ 118
           +FHR+IP FM QGGDFT GNGTGG SIYG KFADENF +KH   GILSMANAGP TNGSQ
Sbjct: 55  TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 114

Query: 119 FFISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKMGSRSG--RTKKPVVIADCG 169
           FFI+   T WLDGKHV FG+V +    +VVK IE +GS SG  R+     I +CG
Sbjct: 115 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 169

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  154 bits (389), Expect = 5e-49
 Identities = 92/169 (54%), Positives = 118/169 (69%), Gaps = 9/169 (5%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
             KV+FD+T+G +P GR+V+ LF +  P+T ENF+ L +GE G G       YKGS FHR
Sbjct: 5   TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHR 57

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VI  FM QGGDFT  +GTGG+SIYG++F DEN   KH   G +SMANAGP +NGSQFF++
Sbjct: 58  VIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVT 116

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGI 170
              T WLDG+HV FG+VVEGM+VVK +E   +  + + KK V I DCG+
Sbjct: 117 TAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGV 165

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 2e-44
 Identities = 68/156 (43%), Positives = 90/156 (57%), Gaps = 14/156 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G + +EL  D+TP+T ENF  LC             +Y G+ FHR I  F+ QGGD T G
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-G 58

Query: 78  NGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
            GTGGES +G  F DE      HTG GILSMAN+GP +N SQFFI+     +LD KH  F
Sbjct: 59  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 118

Query: 137 GQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGI 170
           G+VV G +V+ A+E +    ++ R K+ + I    +
Sbjct: 119 GRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 154

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 8e-43
 Identities = 70/167 (41%), Positives = 94/167 (56%), Gaps = 18/167 (10%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
              P V+ + ++G      IV+EL+    P+T +NF  L              +Y G+ F
Sbjct: 9   WQPPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRG----------YYNGTKF 53

Query: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQF 119
           HR+I  FM QGGD T G G GG SIYG +F DE +   K TG GIL+MANAGP TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112

Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMG-SRSGRTKKPVVI 165
           F++   T+WLDGKH  FG+V +G+ +V  +  +  +   R    V I
Sbjct: 113 FVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  127 bits (320), Expect = 2e-38
 Identities = 68/178 (38%), Positives = 86/178 (48%), Gaps = 16/178 (8%)

Query: 1   MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-----KPLHY 55
           +A               G I + LF +  P+T  NF  L  G K               Y
Sbjct: 1   LATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFY 55

Query: 56  KGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTN 115
            G+ FHRVI GFM QGGD T G G GG         + +   +   P +L+MANAGPGTN
Sbjct: 56  DGAVFHRVIQGFMIQGGDPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTN 112

Query: 116 GSQFFISAGKTEWLDGKHVAFGQVV--EGMNVVKAIEKMGS-RSGRTKKPVVIADCGI 170
           GSQFFI+ GKT  L+ +H  FG+V+  E   VV+AI K  +  + R   PVVI    I
Sbjct: 113 GSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 170

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 6e-38
 Identities = 60/155 (38%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I +E+F + TP+T ENF ALC             +Y G  FHR I GFM Q GD T  
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPTGT 59

Query: 78  NGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFG 137
              G          + +   KH   G++SMAN GP TNGSQFFI+ GK   LD K+  FG
Sbjct: 60  GRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFG 119

Query: 138 QVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGI 170
           +V++G+  +  +EK+    ++ R    V I D  I
Sbjct: 120 KVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 9e-35
 Identities = 60/170 (35%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
            PK   D  +     G I  +LF    P+T ENF              +  +Y G +FHR
Sbjct: 4   GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHR 53

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           +I GFM Q GD T     G     G    + +   +H  P  LSMANAG  TNGSQFFI+
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGI 170
              T WLD KH  FG+V +GM VV+ I  +    ++ +  + V I +  +
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 163

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 53/153 (34%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G   +EL+   +P+T  NF  LC              Y  + FHRVIP F+ QGGD T  
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNTIFHRVIPNFVIQGGDPTGT 75

Query: 78  NGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFG 137
              G          + N   KHTG GILSM+N GP TN SQFFI+      LDGKH  F 
Sbjct: 76  GKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFA 135

Query: 138 QVVEGMNVVKAIEKMG-SRSGRTKKPVVIADCG 169
           +V + M  ++ I  +  + + +    + I    
Sbjct: 136 RVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 7e-30
 Identities = 51/178 (28%), Positives = 71/178 (39%), Gaps = 27/178 (15%)

Query: 3   NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
           +P V    +     AG I +EL     P + +NF                  Y  ++FHR
Sbjct: 4   DPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHR 48

Query: 63  VIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
           VIPGFM QGG FT        +      AD     ++T   I     A   +  SQFFI+
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGL--RNTRGTIAMARTADKDSATSQFFIN 106

Query: 123 AGKTEWLD-----GKHVAFGQVVEGMNVVKAIEKM-----GSRSGRTKKPVVIADCGI 170
                +LD       +  FG+VV+GM+V   I ++     G       KPVVI    +
Sbjct: 107 VADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (258), Expect = 3e-29
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 17  AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTA 76
            G IV++ F D  P T +NF   C          +   Y  + FHRVI GFM QGG F  
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEP 57

Query: 77  GNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWL------- 129
           G      +       + N   K+T   +       P +  +QFFI+    ++L       
Sbjct: 58  GMKQK--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 130 -DGKHVAFGQVVEGMNVVKAIEKM-----GSRSGRTKKPVVIADCGI 170
               +  F +VV+GM+ V  I+ +     G      K+ V+I    +
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  102 bits (255), Expect = 6e-29
 Identities = 62/155 (40%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAG 77
           G I + LF     +T +NF                 +Y    FHRVI  FM Q GD + G
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-G 59

Query: 78  NGTGGESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
           +GTGGESI+G++F DE F    H+ P ++SMAN GP TNGSQFFI+     WLD KH  F
Sbjct: 60  DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 119

Query: 137 GQVVEGMNVVKAIEKMG-SRSGRTKKPVVIADCGI 170
           G+V +G  +V  IEK+   +  +  + + I +  I
Sbjct: 120 GKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=3e-54  Score=327.58  Aligned_cols=172  Identities=73%  Similarity=1.244  Sum_probs=164.0

Q ss_pred             CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      |+||+|||||+++++++|+|+||||.++||+||+||++||+++.+.....+.++|+++.|||++|++++|+|+....++.
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCC
Confidence            99999999999999999999999999999999999999999987776667889999999999999999999999888888


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      +....++..+++|.....|+.+|+|||++.++++++|||||++++.|+||++|+|||+|++|||||++|++.++++++|.
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~  160 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPV  160 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCC
Confidence            88888888899999988999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             CCeEEeeeeEEe
Q 030245          161 KPVVIADCGIYY  172 (180)
Q Consensus       161 ~~i~I~~cg~l~  172 (180)
                      ++|+|.+||+|+
T Consensus       161 ~~i~I~~cG~l~  172 (172)
T d2igva1         161 KDCMIADCGQLK  172 (172)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCeEEEeccccC
Confidence            999999999984

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-51  Score=308.31  Aligned_cols=161  Identities=66%  Similarity=1.181  Sum_probs=151.6

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      ||+|||||+++++.+|+|+||||.++||++|+||++||.+.       +.++|+++.|||++|++++|+|+.....+.+.
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~-------~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~   73 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-------KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG   73 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTT-------TSCCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhc-------cccccCCcEEEEEEEeeeEEeeeccCCCCCCC
Confidence            89999999999999999999999999999999999999765       34689999999999999999999987777777


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP  162 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~  162 (180)
                      ...++..+.++....+|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..++.+++|.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~  153 (161)
T d2r99a1          74 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK  153 (161)
T ss_dssp             CBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSC
T ss_pred             ccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCC
Confidence            77788888888889999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             eEEeeeeE
Q 030245          163 VVIADCGI  170 (180)
Q Consensus       163 i~I~~cg~  170 (180)
                      |+|.+||+
T Consensus       154 i~I~~CGe  161 (161)
T d2r99a1         154 VIIADCGE  161 (161)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999995

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.1e-51  Score=312.83  Aligned_cols=169  Identities=65%  Similarity=1.115  Sum_probs=157.5

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      +||+|||||++++|++|+|+||||++.||++|+||++||++..... ..+.++|+++.|||+++++++|+|+...+++.+
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~-~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~   80 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccc-cCccCccCcccceEEEeCceEEecCccCCCCCC
Confidence            5899999999999999999999999999999999999998764321 236789999999999999999999998777777


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK  161 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~  161 (180)
                      ....++..++++...+.|+++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~  160 (170)
T d1qnga_          81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCcc
Confidence            77888888899989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEeeeeEE
Q 030245          162 PVVIADCGIY  171 (180)
Q Consensus       162 ~i~I~~cg~l  171 (180)
                      +|+|.+||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999986

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-51  Score=307.84  Aligned_cols=164  Identities=70%  Similarity=1.192  Sum_probs=153.6

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+|||||+++++++|+|+||||.++||++|+||++||.+.       +..+|+++.|||++|++++|+|+....++.+
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~-------~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~   73 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE-------KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTG   73 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTT-------TSCCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcC-------CCcccCCcEEEEecccceEecCCccCCCCCC
Confidence            499999999999999999999999999999999999999655       3347999999999999999999988777777


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK  161 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~  161 (180)
                      ....++..++++.....|+.+|+|||++.++++++|||||++.+.++||++|+|||+|++|||||++|+++++++++|.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~  153 (164)
T d2z6wa1          74 GKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK  153 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCC
Confidence            78888888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEeeeeEEe
Q 030245          162 PVVIADCGIYY  172 (180)
Q Consensus       162 ~i~I~~cg~l~  172 (180)
                      +|+|.+||+|.
T Consensus       154 ~i~I~~cG~l~  164 (164)
T d2z6wa1         154 KIVITDCGQLS  164 (164)
T ss_dssp             CEEEEEEEECC
T ss_pred             CEEEEeCeecC
Confidence            99999999984

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-50  Score=313.61  Aligned_cols=174  Identities=62%  Similarity=1.050  Sum_probs=160.8

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      +||+|||||+++++.+|+|+||||.+.||++|+||++||+++.+... ..+.++|+|+.|||++|++++|+|+.....+.
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCC
Confidence            49999999999999999999999999999999999999987765332 34678999999999999999999998777777


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK  160 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~  160 (180)
                      +....++..++++.....|+.+|+|+|++.++++++|||||+|++.++||++|+|||||++|||||++|+++++++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~  172 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPA  172 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEES
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcC
Confidence            77777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeeeeEEeeCC
Q 030245          161 KPVVIADCGIYYYVG  175 (180)
Q Consensus       161 ~~i~I~~cg~l~~~~  175 (180)
                      ++|+|.+||+|.+.+
T Consensus       173 ~~i~I~~cG~l~~~~  187 (195)
T d1ihga2         173 KLCVIAECGELKEGD  187 (195)
T ss_dssp             SCEEEEEEEEECTTC
T ss_pred             CCeEEEECcccCCCC
Confidence            999999999998643

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=4.9e-50  Score=304.60  Aligned_cols=171  Identities=58%  Similarity=0.972  Sum_probs=158.0

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT   80 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~   80 (180)
                      .|++|||||+++++.+|+|+||||.+.||++|+||++||.+..+.+. ..+.++|+++.|||++|++++|+|+...+++.
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            48999999999999999999999999999999999999998776543 35778999999999999999999998877777


Q ss_pred             CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245           81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT  159 (180)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p  159 (180)
                      +..+.+.....++....+|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            777777777777888999999999999999999999999999999999999999999999999999999999997 8899


Q ss_pred             CCCeEEeeeeEEe
Q 030245          160 KKPVVIADCGIYY  172 (180)
Q Consensus       160 ~~~i~I~~cg~l~  172 (180)
                      .++|+|.+||+|.
T Consensus       162 ~~~i~I~~cGel~  174 (174)
T d1a33a_         162 LADVVILNCGELV  174 (174)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEeeEEEC
Confidence            9999999999973

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.2e-49  Score=297.07  Aligned_cols=160  Identities=69%  Similarity=1.164  Sum_probs=149.8

Q ss_pred             EEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCc
Q 030245            5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGES   84 (180)
Q Consensus         5 ~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~   84 (180)
                      +|||||+++++++|+|+||||.++||++|+||++||.++.+.       +|+++.|||++|++++|+|++..+++.++.+
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~   75 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS   75 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCcc
Confidence            689999999999999999999999999999999999765432       5999999999999999999998777777777


Q ss_pred             ccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCeE
Q 030245           85 IYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVV  164 (180)
Q Consensus        85 ~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~i~  164 (180)
                      .+...+.+|...++|+++|+|||++.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|.++|+
T Consensus        76 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~  155 (162)
T d2cfea1          76 IYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIE  155 (162)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEE
T ss_pred             cCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeE
Confidence            88888889988999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             EeeeeEE
Q 030245          165 IADCGIY  171 (180)
Q Consensus       165 I~~cg~l  171 (180)
                      |.+|||.
T Consensus       156 I~~cgv~  162 (162)
T d2cfea1         156 IAKCGVC  162 (162)
T ss_dssp             EEEEEEC
T ss_pred             EEeeEcC
Confidence            9999983

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=2.2e-49  Score=300.68  Aligned_cols=168  Identities=58%  Similarity=1.071  Sum_probs=149.3

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+|||||+++++++|+|+||||.+.||++|+||++||+...  ...++...|+++.|||++|++++|+|+...+.+..
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~--~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~   82 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF--RKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   82 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCC--EETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccc--cccCCCCCcCCcccceeccceeeccCCcccCCcce
Confidence            3999999999999999999999999999999999999995431  01112223999999999999999999987666666


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      .......+++++.....|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  162 (173)
T d1qoia_          83 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  162 (173)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             eecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCC
Confidence            66666677888888888889999999999999999999999999999999999999999999999999999997 89999


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      ++|+|.+||+|
T Consensus       163 ~~i~I~~cGel  173 (173)
T d1qoia_         163 LPVVISQCGEM  173 (173)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEcccCC
Confidence            99999999986

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=7.8e-49  Score=295.98  Aligned_cols=161  Identities=55%  Similarity=0.999  Sum_probs=145.2

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      .++|||||+++++++|+|+||||.+.||++|+||++||.+..+       ..|+|+.|||++|++++|+|+....++.+.
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~-------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   77 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENG-------FGYKGSIFHRVIRNFMIQGGDFTNFDGTGG   77 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS-------CCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccccc-------ccccCcEEEEEcCCCEEEeCCCCCCCCCCC
Confidence            6899999999999999999999999999999999999976543       249999999999999999999887777776


Q ss_pred             CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245           83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK  161 (180)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~  161 (180)
                      ...++..++++... .++.+|+|+|++.++++++|||||+++++++||++|+|||||++|||+|++|++++++ +++|.+
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~  156 (166)
T d1xo7a_          78 KSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKK  156 (166)
T ss_dssp             CBTTBSCBCCCCCC-SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred             CCCCCccccccccc-ccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCC
Confidence            66666666655554 4556999999999999999999999999999999999999999999999999999987 889999


Q ss_pred             CeEEeeeeEE
Q 030245          162 PVVIADCGIY  171 (180)
Q Consensus       162 ~i~I~~cg~l  171 (180)
                      +|+|.+||+|
T Consensus       157 ~i~I~~cgvl  166 (166)
T d1xo7a_         157 AVKINDCGVL  166 (166)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEeC
Confidence            9999999997

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.7e-48  Score=297.04  Aligned_cols=163  Identities=58%  Similarity=0.929  Sum_probs=152.5

Q ss_pred             cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCC
Q 030245            4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGE   83 (180)
Q Consensus         4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   83 (180)
                      .+|||||+++++++|+|+||||.+.||++|+||++||.+.       +..+|+++.|||++|++++|+|+....++.++.
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~-------k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   80 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE-------KGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGM   80 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTT-------TSCSSTTCBEEEEETTTEEEECCCSSSSSSCCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcC-------CCccccCceeeeeecCceEEcCCCCCCCCCCCC
Confidence            5799999999999999999999999999999999999765       345799999999999999999998877777778


Q ss_pred             cccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCC
Q 030245           84 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKP  162 (180)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~  162 (180)
                      ..++..++++.....|+.+|+|||++.++++++|||||++++.++||++|+|||||++|||||++|++++++ +++|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~  160 (182)
T d2rmca_          81 SIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTD  160 (182)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSC
T ss_pred             CCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCC
Confidence            888888888888889999999999999999999999999999999999999999999999999999999987 8999999


Q ss_pred             eEEeeeeEEee
Q 030245          163 VVIADCGIYYY  173 (180)
Q Consensus       163 i~I~~cg~l~~  173 (180)
                      |+|.+||+|+.
T Consensus       161 v~I~~~g~l~~  171 (182)
T d2rmca_         161 CTIVNSGKIDV  171 (182)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEeeEEeC
Confidence            99999999963

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=7.8e-49  Score=300.03  Aligned_cols=165  Identities=57%  Similarity=0.939  Sum_probs=153.4

Q ss_pred             cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCC
Q 030245            4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGE   83 (180)
Q Consensus         4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   83 (180)
                      .+|||||+++++++|+|+||||.+.||++|+||++||.+.       +..+|+++.|||++|++++|+|+...+++.++.
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g-------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~   79 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKP-------KGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSC-------TTTSSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhc-------ccCCcCCceEEEEEecceEEcCCCCCCCCCCCC
Confidence            3799999999999999999999999999999999999654       345799999999999999999999887888888


Q ss_pred             cccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCC
Q 030245           84 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKP  162 (180)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~  162 (180)
                      ..++..+.++.....|+.+|+++|++.++++++|||||+++++++||++|+|||||++|||+|++|++++++ +++|.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~  159 (182)
T d1h0pa_          80 SIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQD  159 (182)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSC
T ss_pred             CCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCC
Confidence            888888888888899999999999999999999999999999999999999999999999999999999988 6799999


Q ss_pred             eEEeeeeEEeeCC
Q 030245          163 VVIADCGIYYYVG  175 (180)
Q Consensus       163 i~I~~cg~l~~~~  175 (180)
                      |+|.+||+|...+
T Consensus       160 v~I~~cG~l~~~~  172 (182)
T d1h0pa_         160 VIIAASGHIAVDT  172 (182)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             EEEEECCeEeCCC
Confidence            9999999998443

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.9e-48  Score=297.79  Aligned_cols=168  Identities=49%  Similarity=0.907  Sum_probs=153.8

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      +||+|||||+++++.+|+|+||||.+.||++|+||++||++..+.+  .+...|+|+.|||++|++++|+|+.....+..
T Consensus        15 ~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~--~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~   92 (186)
T d1z81a1          15 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG   92 (186)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccC--CcccccCCCeeeeeecceeeecCCccccCCcc
Confidence            3899999999999999999999999999999999999998764322  23445999999999999999999987777777


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcC--HHHHHHHHhCCCC--CC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEG--MNVVKAIEKMGSR--SG  157 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G--~~vl~~I~~~~~~--~~  157 (180)
                      ....++..++++.....|+++|+++|++.++++++|||||++++.|+||++|+|||||++|  ||+|++|++++++  .+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~  172 (186)
T d1z81a1          93 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  172 (186)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             cccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCC
Confidence            7777888888899999999999999999999999999999999999999999999999999  9999999999886  57


Q ss_pred             CCCCCeEEeeeeEE
Q 030245          158 RTKKPVVIADCGIY  171 (180)
Q Consensus       158 ~p~~~i~I~~cg~l  171 (180)
                      +|.++|+|.+||+|
T Consensus       173 ~P~~~i~I~~CGel  186 (186)
T d1z81a1         173 KPKIPINVVECGEL  186 (186)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             ccCCCEEEEeCCcC
Confidence            99999999999986

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-46  Score=278.27  Aligned_cols=149  Identities=46%  Similarity=0.716  Sum_probs=134.0

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||.+.||++|+||++||          +.++|+++.|||++|+++||+|+.... ..++...++..++.|.
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~----------~~g~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~   75 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEY   75 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHH----------hhhcccceeEecccCCeEEEeCCcccc-CCCCcccCCCcccccc
Confidence            89999999999999999999999999          556899999999999999999997643 3344445566666665


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~cg~l  171 (180)
                      . .++|+++|+|||++.++++++|||||++++.|+||++|+|||||++||++|++|++++++  +++|.++|+|.+|++|
T Consensus        76 ~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~  155 (159)
T d2ok3a1          76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (159)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             ccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEE
Confidence            5 678999999999999999999999999999999999999999999999999999999986  5689999999999999


Q ss_pred             eeC
Q 030245          172 YYV  174 (180)
Q Consensus       172 ~~~  174 (180)
                      .+|
T Consensus       156 ~~P  158 (159)
T d2ok3a1         156 ANP  158 (159)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            876

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=2.5e-46  Score=283.43  Aligned_cols=161  Identities=59%  Similarity=1.018  Sum_probs=119.5

Q ss_pred             cEEEEEEE-----ECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCC
Q 030245            4 PKVFFDMT-----VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGN   78 (180)
Q Consensus         4 p~v~~di~-----~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~   78 (180)
                      |+|||||+     ++.|++|+|+||||.++||++|+||++||++..+       ..|+++.|||++|++++|+|++...+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~-------~~y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG-------EGYRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT-------TSSTTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccc-------ccccCceeeEEEEEEeeEcCCccCCC
Confidence            68999998     6678999999999999999999999999965432       24999999999999999999988777


Q ss_pred             CCCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE--cCHHHHHHHHhCCCCC
Q 030245           79 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV--EGMNVVKAIEKMGSRS  156 (180)
Q Consensus        79 ~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~  156 (180)
                      +.++...++..+.++...+.|+++|+|||+++++++++|||||++++.|+||++|+|||||+  +||+||++|+++++++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~  154 (171)
T d2c3ba1          75 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  154 (171)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCC
Confidence            77777777777778888899999999999999999999999999999999999999999999  4999999999999884


Q ss_pred             C--CCCCCeEEeeeeEE
Q 030245          157 G--RTKKPVVIADCGIY  171 (180)
Q Consensus       157 ~--~p~~~i~I~~cg~l  171 (180)
                      +  +|..+|+|.+||+|
T Consensus       155 g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         155 GSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCcCCCCCEEEEeCccC
Confidence            3  68999999999986

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-45  Score=276.31  Aligned_cols=149  Identities=47%  Similarity=0.764  Sum_probs=138.0

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||.+.||++|+||++||          +.++|+|+.|||++|++++|+|+.. ..+.+....++..+.+|.
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~----------~~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~   75 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   75 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHH----------hcCCcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCcc
Confidence            89999999999999999999999999          5668999999999999999999976 456667777788888876


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeeeeEE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADCGIY  171 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~cg~l  171 (180)
                      . .++|.++|+|||+++++++++|||||+++++++||++|+|||||++|||+|++|++++++  +++|.++|+|.+|.+|
T Consensus        76 ~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il  155 (178)
T d1zkca1          76 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  155 (178)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             ccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence            5 688999999999999999999999999999999999999999999999999999999885  6899999999999999


Q ss_pred             eeC
Q 030245          172 YYV  174 (180)
Q Consensus       172 ~~~  174 (180)
                      .+|
T Consensus       156 ~~p  158 (178)
T d1zkca1         156 VDP  158 (178)
T ss_dssp             ECT
T ss_pred             cCC
Confidence            876

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-45  Score=273.54  Aligned_cols=151  Identities=46%  Similarity=0.817  Sum_probs=138.8

Q ss_pred             CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245            3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG   82 (180)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   82 (180)
                      +|+|+|+     |++|+|+||||.+.||++|+||++||          +.++|+|+.|||+++++++|+|++. ..+.++
T Consensus        11 ~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~----------~~g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~   74 (166)
T d1xwna1          11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA----------RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRGG   74 (166)
T ss_dssp             CCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHH----------HHTSSTTCCEEEEETTTEEEECCST-TTTSSC
T ss_pred             CCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHH----------hcCCcCceeeeEEcccEEEEeCCCC-CCCCCC
Confidence            7999999     88999999999999999999999999          6678999999999999999999985 455666


Q ss_pred             CcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245           83 ESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK  160 (180)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~  160 (180)
                      ...++..+++|.. .+.|+++|+|||+++++++++|||||++++.++||++|+|||+|++|||||++|++++++ +++|.
T Consensus        75 ~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  154 (166)
T d1xwna1          75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPV  154 (166)
T ss_dssp             CCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBS
T ss_pred             ccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCC
Confidence            6677777877755 788899999999999999999999999999999999999999999999999999999987 89999


Q ss_pred             CCeEEeeee
Q 030245          161 KPVVIADCG  169 (180)
Q Consensus       161 ~~i~I~~cg  169 (180)
                      ++|+|.+.-
T Consensus       155 ~~I~I~~a~  163 (166)
T d1xwna1         155 DDVKIIKAY  163 (166)
T ss_dssp             SCCCEEEEE
T ss_pred             CCeEEEEee
Confidence            999998864

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=9.8e-44  Score=265.07  Aligned_cols=145  Identities=43%  Similarity=0.685  Sum_probs=133.3

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||.+.||++|+||++||          +.++|+|+.|||++|++++|+|++. +.+.++.+.++..++++.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~----------~~g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~   76 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHS----------INGYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEF   76 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHh----------hCCccccceeeeeeecceeeccCCC-CCCcCCcccCCCcccccc
Confidence            89999999999999999999999999          4568999999999999999999986 445566677777888777


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeE
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGI  170 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~  170 (180)
                      . .+.|.++|+++|++.++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|.++|+|.+|.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          77 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             BTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             ccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            7 678888999999999999999999999999999999999999999999999999999987 899999999999965

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.8e-43  Score=266.11  Aligned_cols=144  Identities=42%  Similarity=0.680  Sum_probs=130.5

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |++|+|+||||+++||++|+||++||          +.++|+++.|||+++++++|+|+... ...++.+.....++.|.
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~----------~~g~Y~~~~f~rv~~~~~iq~g~~~~-~~~~~~~~~~~~~~~e~   91 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLC----------EMGFYDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEI   91 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCC
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHh----------hCCccceeeeccccceeeEecccccc-ccCCCcccccccccccc
Confidence            88999999999999999999999999          66789999999999999999999764 33444555566666665


Q ss_pred             c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeee
Q 030245           95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCG  169 (180)
Q Consensus        95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg  169 (180)
                      . .++|.++|+|+|++++|++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|..+|+|.+|+
T Consensus        92 ~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          92 NKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             ccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            5 688999999999999999999999999999999999999999999999999999999987 89999999999985

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-43  Score=265.14  Aligned_cols=152  Identities=33%  Similarity=0.535  Sum_probs=133.5

Q ss_pred             CCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245            2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG   81 (180)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   81 (180)
                      .||+|.|+     |+.|+|+||||.++||++|+||++||          +.++|+|+.|||++|++++|+|+.....+.+
T Consensus         3 g~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~----------~~~~Y~g~~fhRv~~~~~iq~G~~~~~~~~~   67 (166)
T d1v9ta_           3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK   67 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBEEEEETTTEEEESSBCTTCCBC
T ss_pred             CCCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHh----------hCCccccceeeEEEEEeecccCCcCCccccc
Confidence            48999999     89999999999999999999999999          5568999999999999999999976543332


Q ss_pred             CCcccCCCCCCCccccCCCCceEEEeee-cCCCCCCccEEEEcCCCCCCCCC-----ccEEEEEEcCHHHHHHHHhCCCC
Q 030245           82 GESIYGSKFADENFVKKHTGPGILSMAN-AGPGTNGSQFFISAGKTEWLDGK-----HVAFGQVVEGMNVVKAIEKMGSR  155 (180)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~-~g~~~~~sqFfI~l~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~  155 (180)
                         .++..+++|.....++.+|.|+|++ .++++++|||||++++.++||+.     |+|||+|++|||+|++|++++++
T Consensus        68 ---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~  144 (166)
T d1v9ta_          68 ---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             ---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             ---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCccc
Confidence               3456788888766666799999998 56899999999999999988864     89999999999999999999876


Q ss_pred             C-----CCCCCCeEEeeeeEE
Q 030245          156 S-----GRTKKPVVIADCGIY  171 (180)
Q Consensus       156 ~-----~~p~~~i~I~~cg~l  171 (180)
                      .     ++|.++|+|.+|++|
T Consensus       145 ~~~~~~~~P~~~v~I~~~~vl  165 (166)
T d1v9ta_         145 DVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCCCCccCCCeEEEEEEEc
Confidence            2     489999999999997

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-42  Score=258.88  Aligned_cols=148  Identities=40%  Similarity=0.609  Sum_probs=129.2

Q ss_pred             ECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCC
Q 030245           12 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFA   91 (180)
Q Consensus        12 ~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~   91 (180)
                      +-.|+.|+|+||||.+.||++|+||++||          +.++|+|+.|||+.+++++|+|++......+.... ...+.
T Consensus        13 ~~~T~~G~i~ieL~~~~aP~tv~nF~~l~----------~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~-~~~~~   81 (164)
T d2a2na1          13 IIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIW-GGEFE   81 (164)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHH----------HTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTT-SSCBC
T ss_pred             EEEeceeEEEEEEcCCCChHHHHHHHHHH----------hCCCcccceeeEEeeeeeEeecccccccCCCceee-ecccc
Confidence            33499999999999999999999999999          66789999999999999999999864433333332 33444


Q ss_pred             C-CccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeee
Q 030245           92 D-ENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADC  168 (180)
Q Consensus        92 ~-e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~c  168 (180)
                      + +...++|+++|+++|++.++++++|||||++++.|+||++|+|||+|++||+||++|++++++  +++|.++|+|.+|
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v  161 (164)
T d2a2na1          82 DEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI  161 (164)
T ss_dssp             CCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEE
T ss_pred             cccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEE
Confidence            4 344788999999999999999999999999999999999999999999999999999999986  5799999999999


Q ss_pred             eE
Q 030245          169 GI  170 (180)
Q Consensus       169 g~  170 (180)
                      .+
T Consensus       162 ~i  163 (164)
T d2a2na1         162 TV  163 (164)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.3e-41  Score=252.77  Aligned_cols=152  Identities=47%  Similarity=0.759  Sum_probs=130.1

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-----CCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCC
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-----SGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSK   89 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-----~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   89 (180)
                      |+.|+|+||||+++||++|+||++||.+.++.+.     ..+..+|+++.|||+++++++|+|++.. .+.+..   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            8999999999999999999999999987755432     2344589999999999999999999753 222221   123


Q ss_pred             CCCC-ccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE--cCHHHHHHHHhCCCC-CCCCCCCeEE
Q 030245           90 FADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV--EGMNVVKAIEKMGSR-SGRTKKPVVI  165 (180)
Q Consensus        90 ~~~e-~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~-~~~p~~~i~I  165 (180)
                      +.+| ...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||+  +|||||++|++++++ +++|.++|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            3444 44788999999999999999999999999999999999999999999  499999999999988 8999999999


Q ss_pred             eeeeE
Q 030245          166 ADCGI  170 (180)
Q Consensus       166 ~~cg~  170 (180)
                      .+|.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99976

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-40  Score=246.98  Aligned_cols=144  Identities=31%  Similarity=0.498  Sum_probs=123.6

Q ss_pred             EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245           15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN   94 (180)
Q Consensus        15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (180)
                      |+.|+|+||||.+.||++|+||++||          +.++|+|+.|||++|++++|+|+.....+.   ...+.++++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~----------~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~---~~~~~~~~~e~   72 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEECCEEETTTEEEESSEETTTEE---CCCCCCBCCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHH----------HccCcCCceeeEEcCCceeeeeccccCCcC---CccCCCccccc
Confidence            89999999999999999999999999          667899999999999999999987543222   22355677776


Q ss_pred             cccCCCCceEEEeeec-CCCCCCccEEEEcCCC--------CCCCCCccEEEEEEcCHHHHHHHHhCCCC-C----CCCC
Q 030245           95 FVKKHTGPGILSMANA-GPGTNGSQFFISAGKT--------EWLDGKHVAFGQVVEGMNVVKAIEKMGSR-S----GRTK  160 (180)
Q Consensus        95 ~~~~~~~~G~vs~~~~-g~~~~~sqFfI~l~~~--------~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~----~~p~  160 (180)
                      ....++.+|.|+|+++ ++++++|||||++.+.        +++|++|+|||+|++|||+|++|++++++ .    ++|.
T Consensus        73 ~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~  152 (164)
T d1lopa_          73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_dssp             CSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEES
T ss_pred             cccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcC
Confidence            6555556899999975 6899999999999875        77889999999999999999999999886 3    3899


Q ss_pred             CCeEEeeeeEE
Q 030245          161 KPVVIADCGIY  171 (180)
Q Consensus       161 ~~i~I~~cg~l  171 (180)
                      ++|+|.++.+.
T Consensus       153 ~~v~I~~v~I~  163 (164)
T d1lopa_         153 EDVIIESVTVS  163 (164)
T ss_dssp             SCCEEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            99999999875