Citrus Sinensis ID: 030246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Secondary Structure (PSIPRED)
cccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSwlakqplpvEAAIVTATTAINGAAIGAFLGVMtqdltsslptpppqsslnpdavapfqqvqavaggplvqARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLvsgmgganpavnAFTSGLLFAIFQgcsfkvnr
Flexible Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQgcsfkvnr
Low Complexity Region (SEG)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEaaivtattaingaaigaFLGVMtqdltsslptpppqsslNPDavapfqqvqavaGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQssvvaafgsgaafslvsgMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Disordered region (IsUnstruct)
************QLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQ**********************FQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK***
Disordered Region (DISOPRED)
******************************NGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLT*******************************VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Disordered Region (DISEMBL)
********MSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLT************NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Disordered Region (DISPRO)
******KVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224118566	262	predicted protein [Populus trichocarpa]	0.905	0.622	0.711	3e-61
449456433	253	PREDICTED: uncharacterized protein LOC10	0.966	0.687	0.666	6e-59
449497426	253	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.966	0.687	0.666	8e-59
356509122	260	PREDICTED: uncharacterized protein LOC10	0.988	0.684	0.623	2e-58
255557172	261	protein translocase, putative [Ricinus c	0.916	0.632	0.678	4e-58
224134921	260	predicted protein [Populus trichocarpa]	0.977	0.676	0.651	4e-58
356516192	260	PREDICTED: uncharacterized protein LOC10	0.988	0.684	0.612	7e-58
225455153	254	PREDICTED: uncharacterized protein LOC10	0.966	0.685	0.657	1e-54
357464317	263	SAM domain family protein [Medicago trun	0.988	0.676	0.613	1e-52
226494803	270	SAM domain family protein [Zea mays] gi|	0.866	0.577	0.570	4e-46

>gi|224118566|ref|XP_002317852.1| predicted protein [Populus trichocarpa] gi|222858525|gb|EEE96072.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 138/163 (84%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           Q  IK VQFK KELE+G+KSWL+KQ LPVEAA+VTAT  + GAAIGA +G +T D++SS+
Sbjct: 19  QDPIKLVQFKFKELEDGFKSWLSKQSLPVEAAVVTATGGVQGAAIGAIMGTLTPDISSSM 78

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPPQ+SLNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+C+MKRLRGKED+QSS
Sbjct: 79  PTPPPQASLNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIACIMKRLRGKEDVQSS 138

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           +VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 139 MVAAFGSGAMFSLVSGMGGPNLATNAITSGLFFALVQGGLFKL 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456433|ref|XP_004145954.1| PREDICTED: uncharacterized protein LOC101208652 [Cucumis sativus]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 6/180 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKL 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497426|ref|XP_004160398.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208652 [Cucumis sativus]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 6/180 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLXFALVQGGLFKL 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509122|ref|XP_003523301.1| PREDICTED: uncharacterized protein LOC100775460 [Glycine max]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 140/178 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + KELE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVTSQSQNPIEQIQARFKELETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLVQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F++
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFQI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557172|ref|XP_002519617.1| protein translocase, putative [Ricinus communis] gi|223541207|gb|EEF42762.1| protein translocase, putative [Ricinus communis]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 138/165 (83%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           +  I+ +Q K+KELENG+KSWL+KQ L VEAA+VTAT+A  GAAIGA +G +  D++SSL
Sbjct: 17  ENPIQQLQAKMKELENGFKSWLSKQSLAVEAAVVTATSATQGAAIGAIMGTLAPDISSSL 76

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPP ++LNP A+A  +Q QA++GGPLVQARNFAV+TGVNAGIS VMKRLRGKED+QSS
Sbjct: 77  PTPPPDAALNPQAMASIKQAQALSGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSS 136

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR 180
           +VAAFGSGA FSLVSG+GG NPA NA TSGL FA+ QG  F++ +
Sbjct: 137 MVAAFGSGAMFSLVSGVGGPNPAANAITSGLFFALVQGGLFQLGQ 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134921|ref|XP_002321938.1| predicted protein [Populus trichocarpa] gi|222868934|gb|EEF06065.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 145/178 (81%), Gaps = 2/178 (1%)

Query: 2   EKGNEKVMSLVQLP-QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ++G + V+    LP Q  +K VQFK KELE+G+KSWL+KQ L VEAA+VTAT+ + GAAI
Sbjct: 3   QQGKQGVIVSKLLPNQDPVKFVQFKYKELEDGFKSWLSKQSLLVEAAVVTATSGVQGAAI 62

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GA +G +T D++SS+PTPP Q++LNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+
Sbjct: 63  GAIMGTITPDISSSMPTPP-QAALNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIA 121

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           C+MKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 122 CIMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNNATNAITSGLFFALVQGGLFKL 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516192|ref|XP_003526780.1| PREDICTED: uncharacterized protein LOC100813121 [Glycine max]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 140/178 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + K+LE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVASQSQNPIEQIQARFKDLETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPL+QARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLIQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F++
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNQATNALTSGLFFALVQGGLFQI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455153|ref|XP_002267996.1| PREDICTED: uncharacterized protein LOC100267522 [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 145/178 (81%), Gaps = 4/178 (2%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           M++G + VM   Q P   I  +Q + K+LENG+++WLAKQ LPVEAA+VTAT+A  GAAI
Sbjct: 1   MDEGKQGVMVAAQNP---IAQLQARFKDLENGFRAWLAKQSLPVEAAVVTATSAAQGAAI 57

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D TS++PTPP Q++L+P A+A F+Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 58  GAFMGTLTNDATSAIPTPP-QANLSPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 116

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CVMKR+RGKED+QSS+VAAFGSGA FSLVSGMGG N A N  TSGL FA+ QG  F++
Sbjct: 117 CVMKRIRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNVITSGLFFALIQGGIFQI 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464317|ref|XP_003602440.1| SAM domain family protein [Medicago truncatula] gi|355491488|gb|AES72691.1| SAM domain family protein [Medicago truncatula]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 139/181 (76%), Gaps = 3/181 (1%)

Query: 1   MEKGNEKVMSLVQLPQK---AIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAING 57
           ME+G +  M L  LPQ+    I  +Q + K LENG+K WL+KQ + VEAA+VT T A  G
Sbjct: 1   MEQGKQGAMVLKGLPQQLQNPIDQIQTRYKHLENGFKLWLSKQSIAVEAAVVTTTGAAQG 60

Query: 58  AAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA 117
           AAIGAFLG +T D +S+ PTPPP +SLNP A+A  QQ QA+AGGPL+QARNFA++TGV+A
Sbjct: 61  AAIGAFLGTLTGDASSAFPTPPPNASLNPQAMASLQQAQALAGGPLIQARNFAILTGVSA 120

Query: 118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           GI+CV++RLRGKED++SS+ AAFGSG  FSLVSGMGG N   NA TSGL FA+FQG  F+
Sbjct: 121 GITCVLRRLRGKEDVKSSMAAAFGSGVTFSLVSGMGGPNKVGNAVTSGLFFALFQGGVFQ 180

Query: 178 V 178
           +
Sbjct: 181 I 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226494803|ref|NP_001146865.1| SAM domain family protein [Zea mays] gi|195604410|gb|ACG24035.1| SAM domain family protein [Zea mays] gi|413922575|gb|AFW62507.1| SAM domain protein [Zea mays]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 119/156 (76%)

Query: 25  KLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSL 84
           ++K +E G+++W+AKQP+ +EAA+ TA  A+ G A+G  +G +T D  S  P P P S+ 
Sbjct: 39  RVKAIEAGFRAWMAKQPIHIEAAVSTAVGAVQGGALGGLMGSLTADGGSPFPIPQPPSNA 98

Query: 85  NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGA 144
           N DA+A F+Q QA+A GPLVQARNFAV+TG NAGISCVM+RLRG+ED+Q S+ AAFGSGA
Sbjct: 99  NSDAMASFKQAQALAAGPLVQARNFAVMTGANAGISCVMRRLRGQEDIQGSMTAAFGSGA 158

Query: 145 AFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR 180
            FS+VSGMG  NP +NA T+G+ FA+FQG  F + +
Sbjct: 159 LFSIVSGMGTPNPVLNAITTGVAFAVFQGGFFMIGQ 194

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2153959	259	AT5G24650 [Arabidopsis thalian	0.9	0.625	0.380	1.8e-23
TAIR|locus:2114723	261	AT3G49560 "AT3G49560" [Arabido	0.888	0.613	0.337	4e-19

TAIR|locus:2153959 AT5G24650 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/171 (38%), Positives = 81/171 (47%)

Query:     8 VMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVM 67
             VMSL++  Q  I+  Q K KE+E G+KSWL+KQ LPVE                  +G +
Sbjct:    16 VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query:    68 XXXXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLR 127
                              +P             GGPLVQARNFA ITGVNAGI+CVMKR+R
Sbjct:    76 SPEMPQAGI--------DPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIR 127

Query:   128 GKEDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKV 178
             GKEDL+                   G     +NA T+   FA+FQG  FK+
Sbjct:   128 GKEDLESAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKL 177

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2114723 AT3G49560 "AT3G49560" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 57/169 (33%), Positives = 74/169 (43%)

Query:    10 SLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVMXX 69
             SL    Q  I+  Q K KE+E  +K+WL+KQ +PVE                  +G +  
Sbjct:    23 SLFNDQQNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSP 82

Query:    70 XXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLRGK 129
                            +P             GGP VQARNFA ITGVNAGI+ VMKR+RGK
Sbjct:    83 EMPQAGV--------DPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGK 134

Query:   130 EDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKV 178
             ED++                   G     +NA T+   FA+FQG  FK+
Sbjct:   135 EDIESAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKL 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       116   0.00091  102 3  11 22  0.48    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  112 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.43u 0.12s 9.55t   Elapsed:  00:00:01
  Total cpu time:  9.43u 0.12s 9.55t   Elapsed:  00:00:01
  Start:  Mon May 20 16:16:36 2013   End:  Mon May 20 16:16:37 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0031027502 hypothetical protein (263 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	3e-13
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	2e-05
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	2e-04
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	6e-04

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 43  PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
           P      T    + GA  G F G     L ++L + P +  LN         + A     
Sbjct: 3   PERIVYDTGGGFLMGAVYGGFFGAP-HGLVNALRSGPLKLRLN-------GVLNATGRRG 54

Query: 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAF 162
                NFAV  G+ +GI C +++LRGKED  +S++A   +GA   L  G   A  AV A 
Sbjct: 55  PSHGNNFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAA--AVGAA 112

Query: 163 TSGLLFAIF 171
                 A  
Sbjct: 113 VGAAFSAAI 121

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
           NFA+  G+ +   C ++ LRGKED  +++ + F +G   ++  G   A    NA   G+L
Sbjct: 65  NFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSA--VRNAIFGGIL 122

Query: 168 FAIFQGCSFKVNR 180
             I +  S  +NR
Sbjct: 123 LGIIELVSIGMNR 135

Length = 164

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 50  TATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNF 109
           T T  + G AIGA  G+    L  +   P  +  LN       ++      GP       
Sbjct: 38  TGTCYLTGLAIGALNGLR-LGLKETQSMPWTKLRLNQILNMVTRR------GPFW-GNTL 89

Query: 110 AVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155
            ++  V  GI+ +++  RGK D  +SV A   +GA +    G+ G 
Sbjct: 90  GILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGM 135

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
           NFAV  G+ + I C +  +R KED  +S+++ F +GAA ++  G   M G+     A   
Sbjct: 63  NFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGS-----AILG 117

Query: 165 GLLFAIFQGCSFKVNR 180
             + A+ +G    + R
Sbjct: 118 ACILAVIEGVGLVLTR 133

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.94
PTZ00236	164	mitochondrial import inner membrane translocase su	99.93
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.88
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.81
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.76
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.53
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.91
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.87
KOG1398	460	consensus Uncharacterized conserved protein [Funct	94.53
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	94.01
KOG4096	75	consensus Uncharacterized conserved protein [Funct	83.31
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	82.02

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.1e-33  Score=218.53  Aligned_cols=149  Identities=20%  Similarity=0.215  Sum_probs=124.9

Q ss_pred             CCchhhhhHHHHHHHHHHHHHHHH-hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC-CCcchhhhhh
Q 030246           14 LPQKAIKDVQFKLKELENGYKSWL-AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQ-SSLNPDAVAP   91 (180)
Q Consensus        14 ~~~~~~~~~q~~~~~~~~~~k~~~-~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~-~~~~~~~~~~   91 (180)
                      ..++++..+.|+ |+-+.+..+++ .+++|++|+.+++|+|+.+|+++|+|++++.....    .|++. .++++|+   
T Consensus        14 ~~p~~~~~l~pe-~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~----dP~i~~~~ar~q~---   85 (168)
T KOG3225|consen   14 NSPKQYSLLTPE-EVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPN----DPTIYRMPARKQV---   85 (168)
T ss_pred             CCCccccccCcc-ccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCC----CCchhhhhhHHHH---
Confidence            334555666666 55555555555 78899999999999999999999999999985411    11111 2345565   


Q ss_pred             hhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHH
Q 030246           92 FQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIF  171 (180)
Q Consensus        92 ~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~  171 (180)
                      ++   +|+.|++++++||+++|.+|+++||++|++|.|+||+|++++||+||+.++.|+|      +++++.||++|++|
T Consensus        86 ~k---dMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raG------p~a~~~G~agfa~f  156 (168)
T KOG3225|consen   86 AK---DMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAG------PKAAAIGCAGFAAF  156 (168)
T ss_pred             HH---HHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhccc------chhhhhchhHHHHH
Confidence            44   7999999999999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             HHhHhhhc
Q 030246          172 QGCSFKVN  179 (180)
Q Consensus       172 s~a~~~~~  179 (180)
                      |++|.++-
T Consensus       157 S~~id~y~  164 (168)
T KOG3225|consen  157 SAAIDKYM  164 (168)
T ss_pred             HHHHHHhh
Confidence            99999873

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.94  E-value=5.7e-26  Score=183.05  Aligned_cols=124  Identities=24%  Similarity=0.280  Sum_probs=109.4

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030246           38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA  117 (180)
Q Consensus        38 ~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys  117 (180)
                      ..|||+++...+++.++.+|.++|.+++++.+....     |    ..++++..++   +++.+.++++++||++|++|+
T Consensus         5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rns-----p----~g~rl~g~l~---av~~rap~~g~~Fav~g~lys   72 (170)
T TIGR00980         5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNS-----P----KGEKLVGAMR---AIKTRAPVLGGNFAVWGGLFS   72 (170)
T ss_pred             ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcC-----C----ccchhhHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence            378999999999999999999999999999864221     1    1346667776   578899999999999999999


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhc
Q 030246          118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVN  179 (180)
Q Consensus       118 g~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~  179 (180)
                      ++||+++++|+|||+||+++|||+||++|++++|      +++++.+|+++++|.++|+.++
T Consensus        73 ~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G------~~a~~~~aa~gg~~la~ie~~g  128 (170)
T TIGR00980        73 TIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGG------PRAMRGSAILGACILAVIEGVG  128 (170)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999      8999999999999988888654

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.93  E-value=3.9e-25  Score=177.20  Aligned_cols=129  Identities=22%  Similarity=0.331  Sum_probs=104.6

Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHH
Q 030246           37 LAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVN  116 (180)
Q Consensus        37 ~~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~y  116 (180)
                      ...|||+.+...+...++.+|.+.|.++..+.+....     |    ..+++...++   +++.+.++++++||++|++|
T Consensus         6 ~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rns-----p----~g~rl~g~l~---~~~~rap~~g~~FAv~G~~y   73 (164)
T PTZ00236          6 LSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNS-----P----KGERFSGGFY---LLRKRAPILGGNFAIWGGLF   73 (164)
T ss_pred             hCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhC-----C----CcchHHHHHH---HHHhhhhhHHHHHHHHHHHH
Confidence            3589999999999999999988888888888864221     1    1445666666   57789999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhc
Q 030246          117 AGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVN  179 (180)
Q Consensus       117 sg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~  179 (180)
                      +++||+++++|+|||+||+++|||+||++|+++.|.  ++...+++.+|++++++.++-+.++
T Consensus        74 s~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~--~~~~~~a~~Gg~~~~~ie~~~i~~~  134 (164)
T PTZ00236         74 STFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGW--RSAVRNAIFGGILLGIIELVSIGMN  134 (164)
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999992  2223367777777776666655543

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=2.1e-23  Score=159.07  Aligned_cols=126  Identities=28%  Similarity=0.397  Sum_probs=110.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030246           41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS  120 (180)
Q Consensus        41 ~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e  120 (180)
                      ||.-+.+.+++.+++.|.++|++.++++.....     +...+.+++++..++   .++++...++.+||.++++|+++|
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~y~~~~   72 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRP-----PRGSPLRPRLRSILN---AVGRRGPRHGARFGSFGGLYSGIE   72 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCCcHhHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999652111     111234667888887   577888889999999999999999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhcC
Q 030246          121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR  180 (180)
Q Consensus       121 c~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~~  180 (180)
                      |.++++|+|||+||+++||++||++++.+.+      ++.++.+++++++++.++++++|
T Consensus        73 ~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g------~~~~~~~~~~~a~~~~~~~~~~~  126 (128)
T PF02466_consen   73 CALERLRGKDDPWNSAIAGAAAGAVLGLRSG------PRGMASGAALGAAFAAAVEYYGR  126 (128)
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998      99999999999999999999875

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.88  E-value=4e-22  Score=157.88  Aligned_cols=115  Identities=23%  Similarity=0.212  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 030246           46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKR  125 (180)
Q Consensus        46 ~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~  125 (180)
                      .|..++.++++|.++|.+++.+++....+    + ..+.++++...++   +++++.++++++||+++.+|+++||.+++
T Consensus        34 ~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln---~~~~~g~~~G~~~g~~g~lys~~e~~i~~  105 (149)
T TIGR00983        34 LCFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILN---MVTRRGPFWGNTLGILALVYNGINSIIEA  105 (149)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34488888888888888888888654321    1 1233678888887   58899999999999999999999999999


Q ss_pred             HhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHh
Q 030246          126 LRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC  174 (180)
Q Consensus       126 ~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a  174 (180)
                      +|+|||+||+++||++||++|..++|      +++++.+|++-+++.++
T Consensus       106 ~R~k~D~~Nsv~AGa~TGal~~~~~G------~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       106 TRGKHDDFNSVAAGALTGALYKSTRG------LRGMARSGALGATAAGV  148 (149)
T ss_pred             HhccchhhHhHHHHHHHHHHHHhccC------hHHHHHHhHHHHHHhhc
Confidence            99999999999999999999999999      99999999888777654

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.4e-21  Score=156.16  Aligned_cols=123  Identities=19%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030246           38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA  117 (180)
Q Consensus        38 ~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys  117 (180)
                      ..++|+.+....+...+.||.+-|..+..+..-...     |.    .......++   ....+.+.++++||+||++||
T Consensus         5 sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~na-----p~----G~r~~gg~~---av~~~ap~~ggsFAvwgglfS   72 (183)
T KOG1652|consen    5 SREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNA-----PS----GARLVGGIS---AVKMRAPQSGGSFAVWGGLFS   72 (183)
T ss_pred             cCCCCCceeeccccchhhhcccccceeeeeeeeecC-----Cc----ccccccchh---hhhccCcccccceeeeechhh
Confidence            468999999999999999999999888888864222     11    123333333   345677899999999999999


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhh
Q 030246          118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV  178 (180)
Q Consensus       118 g~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~  178 (180)
                      .++|++..+|+|||.||++++|++||++|+.|.|      +++++.+++.|+++.+.|+=+
T Consensus        73 t~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g------~~a~~~sa~~~g~~lamieg~  127 (183)
T KOG1652|consen   73 TVDCALVAIRKKEDPWNSIVSGAATGGLLAARGG------PKAMLTSAITGGLLLAMIEGL  127 (183)
T ss_pred             HHHHHHHHHhcccchHHHHHHHhhccceeecccc------HHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999      888888888888887777644

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.1e-20  Score=149.71  Aligned_cols=158  Identities=15%  Similarity=0.115  Sum_probs=132.7

Q ss_pred             ccCCCchhhhhHHHHHHHHHHHHHHHHhhC-----CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-------
Q 030246           11 LVQLPQKAIKDVQFKLKELENGYKSWLAKQ-----PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTP-------   78 (180)
Q Consensus        11 ~~~~~~~~~~~~q~~~~~~~~~~k~~~~~~-----~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~-------   78 (180)
                      ++++.+++.+.+++. |+-..+++......     +|+-|++++++.|+.+|...|.|.+++.......-..+       
T Consensus        11 ~~~~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vw   89 (191)
T COG5596          11 LSPPSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVW   89 (191)
T ss_pred             cCCCCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccc
Confidence            455567888888888 77777777766433     59999999999999999999999999986543211111       


Q ss_pred             ------CCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCC
Q 030246           79 ------PPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM  152 (180)
Q Consensus        79 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~  152 (180)
                            ....+.+++++.+++   ++..+...+++||+++|..|++.+|+++.+|+|||+.|++.+|++||+.+..+.| 
T Consensus        90 Ggl~~~i~~~~~r~q~~~~~~---n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g-  165 (191)
T COG5596          90 GGLFSTIDCTPFRLQLKEQLN---NAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG-  165 (191)
T ss_pred             cceeeccccchHHHHHhhccc---cccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc-
Confidence                  001355888888888   6889999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCchhHHHHHHHHHHHHHHHhHhhh
Q 030246          153 GGANPAVNAFTSGLLFAIFQGCSFKV  178 (180)
Q Consensus       153 ~~~~~~~~a~~gg~~fa~~s~a~~~~  178 (180)
                           ++++..++++|++|++.+.++
T Consensus       166 -----~qa~~~~~a~~aa~s~~~~~~  186 (191)
T COG5596         166 -----PQAMPMGGAGFAAFSAGITLA  186 (191)
T ss_pred             -----ccccccCccchhhhhhhHHhh
Confidence                 999999999999999998765

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-14  Score=118.08  Aligned_cols=117  Identities=21%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHH
Q 030246           45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM  123 (180)
Q Consensus        45 e~~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~  123 (180)
                      |.+. .+..++..|.++|.|.|.+......     +...+.++++..++.   +..++....+++.++++.+|+.+|..+
T Consensus        75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~-----e~~~~~Klr~nrILN---~~t~~G~~~gN~lG~laL~YsaiesgI  146 (206)
T KOG3324|consen   75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNT-----ENGASGKLRLNRILN---SVTRRGRFWGNTLGSLALMYSAIESGI  146 (206)
T ss_pred             hhhheeccchhccchhhhhHHHHHHhhhcC-----CCCCccchhHHHHhh---hccccccccccchhHHHHHHHHHHHHH
Confidence            6666 8888899999999999999874332     112344677777766   345666678999999999999999999


Q ss_pred             HHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246          124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS  175 (180)
Q Consensus       124 e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~  175 (180)
                      +..|+|||++|+++||.+||+++....|      ++++..+++.-+...++.
T Consensus       147 ~~~R~~dd~lnsv~AGalTGalyrs~~G------lr~~av~ga~g~~aa~aw  192 (206)
T KOG3324|consen  147 EATRGKDDDLNSVAAGALTGALYRSTRG------LRAAAVAGAVGGTAAAAW  192 (206)
T ss_pred             HHhhccccchhhhhhhhhhhhhhhcCCC------chHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999      888887777766665554

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=6.4e-07  Score=73.20  Aligned_cols=73  Identities=22%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             hhhhhHHH-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHH---------HHHHHHHHH
Q 030246          103 LVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAIFQ  172 (180)
Q Consensus       103 ~~~~~~fa-~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~---------gg~~fa~~s  172 (180)
                      .-.+.||+ ++|++++.+.|..+++|.+.|.||....|+++|..++.....  .+-..+.|.         +.+.+++|.
T Consensus        79 ~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~~T  156 (191)
T COG5596          79 HLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGAFT  156 (191)
T ss_pred             cccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhhhh
Confidence            45678888 899999999999999999999999999999999988877654  222444444         666677776


Q ss_pred             HhHhh
Q 030246          173 GCSFK  177 (180)
Q Consensus       173 ~a~~~  177 (180)
                      ++.++
T Consensus       157 Ga~~~  161 (191)
T COG5596         157 GAALA  161 (191)
T ss_pred             hHHHH
Confidence            66554

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.00011  Score=62.61  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             hhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccC
Q 030246           98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG  151 (180)
Q Consensus        98 ~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g  151 (180)
                      +.++.+..+=-.|++.+.|-++...+.-+|+|+|.||-+++|.+||+++.+.-|
T Consensus       127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g  180 (270)
T KOG4608|consen  127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG  180 (270)
T ss_pred             HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence            345666677777899999999999999999999999999999999999887766

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.083  Score=48.18  Aligned_cols=119  Identities=13%  Similarity=0.127  Sum_probs=68.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhCCc-hHHH-HH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhh
Q 030246           19 IKDVQFKLKELENGYKSWLAKQPL-PVEA-AI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQV   95 (180)
Q Consensus        19 ~~~~q~~~~~~~~~~k~~~~~~~~-~~e~-~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (180)
                      +-..+.+++.+....  ..+-++| |.++ |+ .++.|+.--+..|+-....-.-..+. +.-- +   ++..+..+-  
T Consensus       224 f~~vr~fv~~~~~~~--~akhe~C~h~hsnCisys~~gfik~f~~g~~lq~~Lt~v~nv-r~i~-~---~pm~l~sll--  294 (460)
T KOG1398|consen  224 FISVRNFVSDVKVEE--FAKHEPCAHIHSNCISYSANGFIKTFKKGFPLQFSLTFVPNV-RLIL-Q---KPMALTSLL--  294 (460)
T ss_pred             HHHHHHHHHHHHhhh--ccccccccCCCchHHHHHHHHhHhhcccceeeEEEEEecHHH-HHHh-c---CchhhhhHh--
Confidence            444466654444322  1245565 4556 88 67777665555555433322111100 0000 0   011111110  


Q ss_pred             HHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhh
Q 030246           96 QAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL  148 (180)
Q Consensus        96 ~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~  148 (180)
                        .-+.....+.-.+.+-++|..+.|++.++|-+||..|+++||++++..+..
T Consensus       295 --~nrenlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf  345 (460)
T KOG1398|consen  295 --ANRENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF  345 (460)
T ss_pred             --hccccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence              123445567778899999999999999999999999999999998865443

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=94.01  E-value=0.75  Score=37.42  Aligned_cols=120  Identities=13%  Similarity=0.048  Sum_probs=88.5

Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHH
Q 030246           43 PVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC  121 (180)
Q Consensus        43 ~~e~~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec  121 (180)
                      +++++. ...+|.+.|++++++-+..+......+         +-.+..+.++.-.   -..+.+.--++..++...++.
T Consensus        13 ~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl---------~g~l~av~~rap~---~g~~Fav~g~lys~~ec~i~~   80 (170)
T TIGR00980        13 ILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL---------VGAMRAIKTRAPV---LGGNFAVWGGLFSTIDCAVVA   80 (170)
T ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh---------hHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence            456777 677777788888887777665454431         2233334444322   234566667888899999998


Q ss_pred             HHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhcC
Q 030246          122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR  180 (180)
Q Consensus       122 ~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~~  180 (180)
                      .-++-=-.+-++-..+.|.+-++-=+.+.-      +..++.+++++++|.++-+.++|
T Consensus        81 ~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~  133 (170)
T TIGR00980        81 IRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTR  133 (170)
T ss_pred             HhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766788899999999998888777776      88999999999999999888764

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.31  E-value=1  Score=31.80  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=43.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHH
Q 030246           40 QPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI  119 (180)
Q Consensus        40 ~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~  119 (180)
                      .||.-|.-+..++|...|.+.|.++|.+... .+.+   +    -+.-++.       +++-+..++..|+.+=++=+++
T Consensus         5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~l-R~g~---~----g~~~vr~-------iGkt~~~SagtFG~FM~igs~I   69 (75)
T KOG4096|consen    5 PSCFDKIKMGLMMGGAVGGATGALFGGFAAL-RYGP---R----GRGLVRT-------IGKTMLQSAGTFGLFMGIGSGI   69 (75)
T ss_pred             ccHHHHHHHHHHHHhhhhhhhhhhccchhhe-eecC---C----hhHHHHH-------HhHHHHhccchhhhhhhhhhhe
Confidence            4566666666777777777777777777753 2211   1    1333332       4556677888899888888888


Q ss_pred             HHH
Q 030246          120 SCV  122 (180)
Q Consensus       120 ec~  122 (180)
                      +|-
T Consensus        70 r~~   72 (75)
T KOG4096|consen   70 RCG   72 (75)
T ss_pred             ecC
Confidence            774

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=82.02  E-value=1.7  Score=30.19  Aligned_cols=66  Identities=14%  Similarity=0.118  Sum_probs=34.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030246           41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS  120 (180)
Q Consensus        41 ~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e  120 (180)
                      +|.-|.-+...+|+..|..+|.++|.++.- .+.  .++     +.-++.       +++-+...+..|+.+=++=+.++
T Consensus         2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~-r~g--~~~-----~~~~~~-------lg~~~l~sg~tFG~Fm~iGs~IR   66 (67)
T PF10247_consen    2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAF-RYG--ARG-----RGLMRT-------LGKYMLGSGATFGFFMSIGSVIR   66 (67)
T ss_pred             cHHHHHHHHHHHhhHHHhhhhhhhhhHHHh-ccC--CCC-----cchHhH-------HhHHHhcchhHHHHHHhhhcccc
Confidence            455555556666666666666666666642 221  111     223322       34444566777776655555444


Q ss_pred             H
Q 030246          121 C  121 (180)
Q Consensus       121 c  121 (180)
                      |
T Consensus        67 c   67 (67)
T PF10247_consen   67 C   67 (67)
T ss_pred             C
Confidence            3

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAK--------QPLPVEAA--IVT 50
            +   + ++S+ +     + +  F  K++++  KS L+K            V     +  
Sbjct: 14  HQYQYKDILSVFE--DAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 51  ATTAINGAAIGAFLG-VMTQD---LTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQA 106
              +     +  F+  V+  +   L S + T   Q S+        +Q   +     V A
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFA 127

Query: 107 RNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGG------ANPAVN 160
           +       V+        RL+    L+ +++      A   L+ G+ G      A     
Sbjct: 128 KYN-----VS--------RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 161 A--FTSGLLFAIF 171
           +      + F IF
Sbjct: 173 SYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00