Citrus Sinensis ID: 030248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Secondary Structure (PSIPRED)
cccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEEEEcccccccccEEEEEEccccEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEHccccccEEEEEccccccccccccEEEEEccccccEEcEEEEEEEccccccEEEEEEEEEcccccccEEEEEccccccccccHcccccccEccHccEEEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSgsmepgfkrgDILFLhmskdpirageivvfnvdgreipiVHRVIKVherqdtgevevltkgdnnygddrlLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Flexible Loop (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHrvikvherqdtgevevltkgdnnygdDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Low Complexity Region (SEG)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Disordered region (IsUnstruct)
***IGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVIT***
Disordered Region (DISOPRED)
*******IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Disordered Region (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Disordered Region (DISPRO)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q5RC30	192	Signal peptidase complex	yes	no	0.944	0.885	0.593	4e-54
Q9BY50	192	Signal peptidase complex	yes	no	0.944	0.885	0.593	4e-54
Q9WTR7	192	Signal peptidase complex	yes	no	0.944	0.885	0.587	5e-54
Q9D8V7	192	Signal peptidase complex	yes	no	0.944	0.885	0.587	7e-54
P13679	192	Signal peptidase complex	yes	no	0.944	0.885	0.587	8e-54
Q9R0P6	179	Signal peptidase complex	no	no	0.883	0.888	0.602	5e-52
Q5R9C7	179	Signal peptidase complex	no	no	0.883	0.888	0.596	2e-51
P67812	179	Signal peptidase complex	no	no	0.883	0.888	0.596	2e-51
P67811	179	Signal peptidase complex	no	no	0.883	0.888	0.596	2e-51
P67810	179	Signal peptidase complex	no	no	0.883	0.888	0.596	2e-51

>sp|Q5RC30|SC11C_PONAB Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            +K +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9

>sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            +K +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9WTR7|SC11C_RAT Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3

 Score =  210 bits (534), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9D8V7|SC11C_MOUSE Signal peptidase complex catalytic subunit SEC11C OS=Mus musculus GN=Sec11c PE=2 SV=3

 Score =  209 bits (533), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P13679|SC11C_CANFA Signal peptidase complex catalytic subunit SEC11C OS=Canis familiaris GN=SEC11C PE=1 SV=3

 Score =  209 bits (532), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9R0P6|SC11A_MOUSE Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus GN=Sec11a PE=2 SV=1

 Score =  203 bits (516), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 6   ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
           + ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RG
Sbjct: 5   DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64

Query: 66  DILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 124
           D+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR
Sbjct: 65  DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDR 123

Query: 125 LLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 165
            LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q5R9C7|SC11A_PONAB Signal peptidase complex catalytic subunit SEC11A OS=Pongo abelii GN=SEC11A PE=2 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 6   ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
           + ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RG
Sbjct: 5   DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64

Query: 66  DILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 124
           D+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR
Sbjct: 65  DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDR 123

Query: 125 LLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 165
            LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67812|SC11A_HUMAN Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens GN=SEC11A PE=1 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 6   ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
           + ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RG
Sbjct: 5   DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64

Query: 66  DILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 124
           D+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR
Sbjct: 65  DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDR 123

Query: 125 LLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 165
            LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67811|SC11A_CANFA Signal peptidase complex catalytic subunit SEC11A OS=Canis familiaris GN=SEC11A PE=1 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 6   ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
           + ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RG
Sbjct: 5   DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64

Query: 66  DILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 124
           D+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR
Sbjct: 65  DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDR 123

Query: 125 LLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 165
            LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67810|SC11A_BOVIN Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus GN=SEC11A PE=2 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 6   ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
           + ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RG
Sbjct: 5   DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64

Query: 66  DILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 124
           D+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR
Sbjct: 65  DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDR 123

Query: 125 LLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 165
            LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
356561967	180	PREDICTED: signal peptidase complex cata	1.0	1.0	0.955	2e-94
317106733	180	JHL06P13.9 [Jatropha curcas]	1.0	1.0	0.944	7e-94
224070829	180	predicted protein [Populus trichocarpa]	1.0	1.0	0.938	8e-94
449468994	180	PREDICTED: signal peptidase complex cata	1.0	1.0	0.95	1e-93
224054124	180	predicted protein [Populus trichocarpa]	1.0	1.0	0.938	2e-93
255553143	180	Microsomal signal peptidase 18 kDa subun	1.0	1.0	0.938	2e-93
363808256	180	uncharacterized protein LOC100807064 [Gl	1.0	1.0	0.938	3e-93
225443007	180	PREDICTED: signal peptidase complex cata	1.0	1.0	0.933	3e-93
118483871	180	unknown [Populus trichocarpa]	1.0	1.0	0.927	4e-93
255637768	180	unknown [Glycine max]	1.0	1.0	0.933	7e-93

>gi|356561967|ref|XP_003549247.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Glycine max]

 Score =  349 bits (896), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/180 (95%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGES++SIKSLQIRQVLTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGESVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYA GQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106733|dbj|BAJ53229.1| JHL06P13.9 [Jatropha curcas]

 Score =  348 bits (892), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 170/180 (94%), Positives = 178/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDNVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070829|ref|XP_002303254.1| predicted protein [Populus trichocarpa] gi|222840686|gb|EEE78233.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (892), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 178/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++S+KS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDTVDSVKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468994|ref|XP_004152206.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus] gi|449484166|ref|XP_004156804.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus]

 Score =  347 bits (889), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/180 (95%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSLQIRQVL+Q VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETMDSIKSLQIRQVLSQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER DTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERPDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054124|ref|XP_002298104.1| predicted protein [Populus trichocarpa] gi|222845362|gb|EEE82909.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIR GEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553143|ref|XP_002517614.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis] gi|223543246|gb|EEF44778.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis]

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIR GEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808256|ref|NP_001242493.1| uncharacterized protein LOC100807064 [Glycine max] gi|255635143|gb|ACU17928.1| unknown [Glycine max]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSL+IRQVLTQ VSLGMIVTSALIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSLRIRQVLTQAVSLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYA GQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443007|ref|XP_002269449.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C [Vitis vinifera] gi|297743433|emb|CBI36300.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/180 (93%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKS+QIRQVL+Q VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQVLSQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYA GQLWL+R HIMGRAVGFLPYVGWVTIIMTEKP+IKY+LIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPLIKYVLIGALGLLVITSKD 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483871|gb|ABK93826.1| unknown [Populus trichocarpa]

 Score =  345 bits (885), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/180 (92%), Positives = 177/180 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++SIKS+QIRQ+LTQ VSLGMIVTSAL++WKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALVVWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIR GEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYAQGQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637768|gb|ACU19206.1| unknown [Glycine max]

 Score =  344 bits (883), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 168/180 (93%), Positives = 175/180 (97%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSLQIRQVLTQ VSLGMIVTS LIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSLQIRQVLTQAVSLGMIVTSVLIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNY
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
           GDDRLLYA GQLWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYI IGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYIFIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2035139	180	AT1G52600 [Arabidopsis thalian	1.0	1.0	0.911	1.3e-86
TAIR|locus:2093202	180	AT3G15710 [Arabidopsis thalian	1.0	1.0	0.833	8.1e-76
MGI|MGI:1929464	179	Sec11a "SEC11 homolog A (S. ce	0.955	0.960	0.580	5.1e-51
UNIPROTKB|P67810	179	SEC11A "Signal peptidase compl	0.955	0.960	0.574	1.7e-50
UNIPROTKB|P67811	179	SEC11A "Signal peptidase compl	0.955	0.960	0.574	1.7e-50
UNIPROTKB|P67812	179	SEC11A "Signal peptidase compl	0.955	0.960	0.574	1.7e-50
UNIPROTKB|Q9BY50	192	SEC11C "Signal peptidase compl	0.938	0.880	0.596	1.7e-50
RGD|69360	179	Sec11a "SEC11 homolog A (S. ce	0.955	0.960	0.574	1.7e-50
RGD|628665	192	Sec11c "SEC11 homolog C (S. ce	0.938	0.880	0.590	2.8e-50
UNIPROTKB|Q9WTR7	192	Sec11c "Signal peptidase compl	0.938	0.880	0.590	2.8e-50

TAIR|locus:2035139 AT1G52600 [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 164/180 (91%), Positives = 176/180 (97%)

Query:     1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
             MGWIGE+++SIKS+QIRQ+ TQ +SLGMIVTSALIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct:     1 MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
             GFKRGDILFLHMSKDPIRAGEIVVFNVDGR+IPIVHRVIKVHER++TGEV+VLTKGDNNY
Sbjct:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNY 120

Query:   121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             GDDRLLYA+GQLWL R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   121 GDDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2093202 AT3G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 150/180 (83%), Positives = 166/180 (92%)

Query:     1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
             MG+IGE+++SIKS++IRQVLTQ ++LGMIVTSALIIWKAL+C+TGSESPVVVVLS SMEP
Sbjct:     1 MGFIGETVDSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEP 60

Query:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNY 120
             GF+RGDILFL M+ +PIRAGEIVVF+VDGREIPIVHR IKVHER DT  V+VLTKGDNN 
Sbjct:    61 GFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNND 120

Query:   121 GDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
              DD  LYA+GQLWL R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   121 IDDIGLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1929464 Sec11a "SEC11 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 101/174 (58%), Positives = 136/174 (78%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 126
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|P67810 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Bos taurus (taxid:9913)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 100/174 (57%), Positives = 136/174 (78%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 126
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P67811 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 100/174 (57%), Positives = 136/174 (78%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 126
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P67812 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 100/174 (57%), Positives = 136/174 (78%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 126
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

UNIPROTKB|Q9BY50 SEC11C "Signal peptidase complex catalytic subunit SEC11C" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 102/171 (59%), Positives = 133/171 (77%)

Query:    11 IKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL 70
             +K +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL
Sbjct:    22 LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFL 81

Query:    71 -HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ 129
              +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +
Sbjct:    82 TNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKE 140

Query:   130 GQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   141 GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

RGD|69360 Sec11a "SEC11 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 100/174 (57%), Positives = 135/174 (77%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMLITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 126
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G VTI+M + P   Y ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFSYAVLFLLGLFVLVHRE 179

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|628665 Sec11c "SEC11 homolog C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 101/171 (59%), Positives = 133/171 (77%)

Query:    11 IKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL 70
             ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL
Sbjct:    22 LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFL 81

Query:    71 -HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ 129
              +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +
Sbjct:    82 TNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKE 140

Query:   130 GQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   141 GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9WTR7 Sec11c "Signal peptidase complex catalytic subunit SEC11C" [Rattus norvegicus (taxid:10116)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 101/171 (59%), Positives = 133/171 (77%)

Query:    11 IKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL 70
             ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL
Sbjct:    22 LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFL 81

Query:    71 -HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ 129
              +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +
Sbjct:    82 TNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKE 140

Query:   130 GQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180
             GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   141 GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BY50	SC11C_HUMAN	3, ., 4, ., 2, 1, ., 8, 9	0.5930	0.9444	0.8854	yes	no
Q9WTR7	SC11C_RAT	3, ., 4, ., 2, 1, ., 8, 9	0.5872	0.9444	0.8854	yes	no
Q4WYF4	SEC11_ASPFU	3, ., 4, ., 2, 1, ., 8, 9	0.4469	0.9111	0.8541	yes	no
P13679	SC11C_CANFA	3, ., 4, ., 2, 1, ., 8, 9	0.5872	0.9444	0.8854	yes	no
Q86JD4	SEC11_DICDI	3, ., 4, ., 2, 1, ., 8, 9	0.5166	0.9944	1.0	yes	no
Q5B8K4	SEC11_EMENI	3, ., 4, ., 2, 1, ., 8, 9	0.4395	0.9222	0.8645	yes	no
A3LXS1	SEC11_PICST	3, ., 4, ., 2, 1, ., 8, 9	0.5	0.8888	0.9638	yes	no
Q5RC30	SC11C_PONAB	3, ., 4, ., 2, 1, ., 8, 9	0.5930	0.9444	0.8854	yes	no
Q9D8V7	SC11C_MOUSE	3, ., 4, ., 2, 1, ., 8, 9	0.5872	0.9444	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III0301 hypothetical protein (180 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	2e-17
TIGR02228	158	TIGR02228, sigpep_I_arch, signal peptidase I, arch	5e-17
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	1e-16
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	5e-10
COG2932	214	COG2932, COG2932, Predicted transcriptional regula	0.001
cd06529	81	cd06529, S24_LexA-like, Peptidase S24 LexA-like pr	0.001

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 49  PVVVVLSGSMEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER 104
             VVV  GSMEP  + GD++ ++         + G++VVF   G    PI+ RVI     
Sbjct: 1   EPVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVI----- 55

Query: 105 QDTGEVEVLTKGDN--NYGDDRLLYAQGQLWLKRQHIMGRA 143
                      GDN  N  D R         +    I+G+ 
Sbjct: 56  ------GYFVLGDNRNNSLDSRYWGP-----VPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|131283 TIGR02228, sigpep_I_arch, signal peptidase I, archaeal type

 Score = 73.6 bits (181), Expect = 5e-17
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 20/141 (14%)

Query: 39  ALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDP--IRAGEIVVFNVDGREIPIVH 96
            L+       PVVVVLSGSMEP F  GD++ +    DP  I+ G+++ +   G   P+ H
Sbjct: 22  GLVSKASGPDPVVVVLSGSMEPTFNTGDLILV-TGADPNDIQVGDVITYKSPGFNTPVTH 80

Query: 97  RVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGF-LPYVGWVTI 155
           RVI+++     GE+  +TKGDNN   D          +  ++++G+ +GF +P+ G+V +
Sbjct: 81  RVIEINNSG--GELGFITKGDNNPAPD-------GEPVPSENVIGKYLGFTIPFAGYVLV 131

Query: 156 IMTEKPIIKYILIGALGLLVI 176
              +        IGA  LL+I
Sbjct: 132 FAPQA-------IGAAALLII 145

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I. Length = 158

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 70.8 bits (174), Expect = 1e-16
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 49  PVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTG 108
             + V   SMEP    GD++ +  S    + G+IVVF + G E   V RVI +      G
Sbjct: 1   FALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPGGE-LTVKRVIGLP-----G 54

Query: 109 EVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRA 143
           E      GDN N  D R+             I+G  
Sbjct: 55  EGHYFLLGDNPNSPDSRIDGP------PELDIVGVV 84

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 53.0 bits (128), Expect = 5e-10
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 52  VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVE 111
            V   SMEP    GD+L +  + +P R G+IVV  +DG E   V R+I +          
Sbjct: 1   RVKGDSMEPTIPDGDLLLVDKTSEPKR-GDIVVARLDGEE-ATVKRLIGLPGDI------ 52

Query: 112 VLTKGDNNYGD 122
           +L   +  Y  
Sbjct: 53  ILLPSNPEYPP 63

Length = 69

>gnl|CDD|225484 COG2932, COG2932, Predicted transcriptional regulator [Transcription]

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 50  VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGE 109
            + V   SMEP ++ GD L +    +  R   + V    G         +K  +R+  G 
Sbjct: 125 ALRVTGDSMEPTYEDGDTLLVDPGVNTRRGDRVYVETDGGELY------VKKLQREPGGL 178

Query: 110 VEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG 145
           + +++   N +Y  D +      +      I+GR V 
Sbjct: 179 LRLVS--LNPDYYPDEIFSEDDDV-----EIIGRVVW 208

Length = 214

>gnl|CDD|119397 cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 57  SMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVL 113
           SMEP    GD++ +  S D  R G+IVV  +DG         +K  +R+  G + ++
Sbjct: 9   SMEPTIPDGDLVLVDPS-DTPRDGDIVVARLDG------ELTVKRLQRRGGGRLRLI 58

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	100.0
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.97
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	99.85
PRK10861	324	signal peptidase I; Provisional	99.75
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.7
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.7
KOG0171	176	consensus Mitochondrial inner membrane protease, s	99.68
KOG1568	174	consensus Mitochondrial inner membrane protease, s	99.4
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.37
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.35
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	99.14
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.07
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.06
COG2932	214	Predicted transcriptional regulator [Transcription	99.06
PRK00215	205	LexA repressor; Validated	98.87
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	98.84
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.8
PRK12423	202	LexA repressor; Provisional	98.78
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.72
PRK13884	178	conjugal transfer peptidase TraF; Provisional	98.61
COG1974	201	LexA SOS-response transcriptional repressors (RecA	98.35
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	98.26
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	94.65

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-41  Score=258.45  Aligned_cols=179  Identities=59%  Similarity=0.984  Sum_probs=169.8

Q ss_pred             CcchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccccCCCEEEEee-cCCCCCc
Q 030248            1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHM-SKDPIRA   79 (180)
Q Consensus         1 ~~~~~~~~~~~~~~~~r~~~~~i~~i~~~i~v~~li~~~l~~~~~~~~p~~~V~g~SM~Ptl~~GD~v~v~~-~~~~~~~   79 (180)
                      |.|..|.+..+|+|++|+.+..++++++++..++++|..+.+.+|+++|+++|.|+||||.++.||+++... ..++.+.
T Consensus         1 ~~~~~~~~~~~k~mn~Rq~l~Q~ln~~mivssA~MiwK~l~vvt~seSPiVVVLSgSMePaF~RGDlLfL~N~~~~p~~v   80 (180)
T KOG3342|consen    1 MLVSLEMFDDLKRMNIRQLLYQVLNFAMIVSSAYMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNRNEDPIRV   80 (180)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeCCCCCEEEEEcCCcCcccccccEEEEecCCCCccee
Confidence            679999999999999999999999999999999999999999999999999999999999999999999875 5677899


Q ss_pred             CcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhccCCccccceeEeeEEEEEecCcceeeeeccc
Q 030248           80 GEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTE  159 (180)
Q Consensus        80 GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~~~~~v~~~~IiG~v~~~iP~~G~v~~~~~~  159 (180)
                      |||++|+.++.+.+++|||+.+.+. ++++..+.||||||...|..+|++++-++++++|+|++.+.+||+|++++|+++
T Consensus        81 GdivVf~vegR~IPiVHRviK~he~-~~~~~~~LTKGDNN~~dD~~Ly~~gq~~L~r~~Ivg~~~G~~Py~G~itI~mnd  159 (180)
T KOG3342|consen   81 GDIVVFKVEGREIPIVHRVIKQHEK-SNGHIKFLTKGDNNAVDDRGLYAQGQNWLERKDIVGRVRGYLPYVGMITIWMND  159 (180)
T ss_pred             ccEEEEEECCccCchhHHHHHHhcc-cCCcEEEEecCCCCcccchhcccccccceeccceeeEEeeccccceEEEEEecC
Confidence            9999999999999999999998764 256778999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhhcCC
Q 030248          160 KPIIKYILIGALGLLVITSKD  180 (180)
Q Consensus       160 ~p~~~~~~~~~~~~~~~~~~~  180 (180)
                      .|.++|+++|.+|+.+|.+||
T Consensus       160 ~p~~KyalL~~lGl~vL~~rE  180 (180)
T KOG3342|consen  160 YPKLKYALLGGLGLSVLLHRE  180 (180)
T ss_pred             CcchHHHHHHHHHHheeeccC
Confidence            999999999999999999997

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.97  E-value=1.5e-29  Score=198.03  Aligned_cols=123  Identities=31%  Similarity=0.568  Sum_probs=101.5

Q ss_pred             HHHHHhhCCCCCeEEEeCCCccccccCCCEEEEee-cCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEec
Q 030248           38 KALMCITGSESPVVVVLSGSMEPGFKRGDILFLHM-SKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKG  116 (180)
Q Consensus        38 ~~l~~~~~~~~p~~~V~g~SM~Ptl~~GD~v~v~~-~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~G  116 (180)
                      ..+....+++.|.+.|.|+||+|++++||++++++ ..+++++||||+|+.++++.+++|||+++.++  +++..|+|||
T Consensus        21 ~~l~~~~~~~~p~v~V~g~SM~Ptl~~GD~vlv~~~~~~~~~~GDIVvf~~~~~~~~iihRVi~v~~~--~g~~~~~tkG   98 (158)
T TIGR02228        21 YGLVSKASGPDPVVVVLSGSMEPTFNTGDLILVTGADPNDIQVGDVITYKSPGFNTPVTHRVIEINNS--GGELGFITKG   98 (158)
T ss_pred             HHheeeccCCCcEEEEcCCCCcCCccCCCEEEEEecccCCCCCCCEEEEEECCCCccEEEEEEEEECC--CCcEEEEEEe
Confidence            33344456677877899999999999999999998 45789999999999887656899999999865  2456799999


Q ss_pred             CCCCCCCchhhccCCccccceeEeeEEE-EEecCcceeeeecccchhHHHHHHHH
Q 030248          117 DNNYGDDRLLYAQGQLWLKRQHIMGRAV-GFLPYVGWVTIIMTEKPIIKYILIGA  170 (180)
Q Consensus       117 Dnn~~~D~~~y~~~~~~v~~~~IiG~v~-~~iP~~G~v~~~~~~~p~~~~~~~~~  170 (180)
                      |||+.+|+.       ++++++++|++. +++||+|++..++++... ..+++++
T Consensus        99 DnN~~~D~~-------~v~~~~IiG~v~~~~iP~~G~~~~~~~~~~~-~~~~~~~  145 (158)
T TIGR02228        99 DNNPAPDGE-------PVPSENVIGKYLGFTIPFAGYVLVFAPQAIG-AAALLII  145 (158)
T ss_pred             cCCCCCCcc-------cCCHHHEEEEEEEeccCcccEEEEEeecCch-hhhhHHh
Confidence            999999964       479999999999 789999999999999654 4444443

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=99.85  E-value=3.1e-21  Score=151.41  Aligned_cols=115  Identities=25%  Similarity=0.326  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccccCCCEEEEeec---CCCCCcCcEEEEEeCCC-CcCEEEE
Q 030248           22 QGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---KDPIRAGEIVVFNVDGR-EIPIVHR   97 (180)
Q Consensus        22 ~i~~i~~~i~v~~li~~~l~~~~~~~~p~~~V~g~SM~Ptl~~GD~v~v~~~---~~~~~~GDIVvf~~~~~-~~~~ihR   97 (180)
                      |+..++++++++++++.|++..       +.|+|+||+|||++||++++++.   ..++++||+|+|+.++. ...++||
T Consensus         1 ~~~~~~~~~~~~~~i~~~~~~~-------~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKR   73 (163)
T TIGR02227         1 LILSLLIAILLALLIRTFVFFP-------YKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKR   73 (163)
T ss_pred             CHHHHHHHHHHHHHHHhhEEEE-------EEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEE
Confidence            3455666777777777777653       99999999999999999999983   37899999999998642 3579999


Q ss_pred             EEEeCCCC----C-----------------------------------CCeeEEEEecCC-CCCCCchhhccCCccccce
Q 030248           98 VIKVHERQ----D-----------------------------------TGEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQ  137 (180)
Q Consensus        98 Vi~~~~~~----~-----------------------------------~g~~~~~t~GDn-n~~~D~~~y~~~~~~v~~~  137 (180)
                      |++++||.    +                                   .++++|+++||| +.|.|||.+    ++|+++
T Consensus        74 Vig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~----G~V~~~  149 (163)
T TIGR02227        74 VIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYF----GFVPID  149 (163)
T ss_pred             EEecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCc----CcCCHH
Confidence            99999872    0                                   025579999999 578999975    689999


Q ss_pred             eEeeEEEEEe
Q 030248          138 HIMGRAVGFL  147 (180)
Q Consensus       138 ~IiG~v~~~i  147 (180)
                      +|+||+..++
T Consensus       150 ~I~Gk~~~~~  159 (163)
T TIGR02227       150 DIIGKVSFVF  159 (163)
T ss_pred             HeEEEEEEEE
Confidence            9999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>PRK10861 signal peptidase I; Provisional

Probab=99.75  E-value=7.8e-18  Score=144.90  Aligned_cols=80  Identities=24%  Similarity=0.347  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccccCCCEEEEeec---------------CCCCCcCcE
Q 030248           18 QVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEI   82 (180)
Q Consensus        18 ~~~~~i~~i~~~i~v~~li~~~l~~~~~~~~p~~~V~g~SM~Ptl~~GD~v~v~~~---------------~~~~~~GDI   82 (180)
                      .++.++..++.+++++++++.|++..       +.|+|+||+|||..||.++++|.               ..++++|||
T Consensus        59 ~~~~~~~~~~~~l~i~~~ir~fv~~~-------~~Ips~SM~PTL~~GD~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDI  131 (324)
T PRK10861         59 GWLETGASVFPVLAIVLIVRSFIYEP-------FQIPSGSMMPTLLIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDI  131 (324)
T ss_pred             hHHHHHHHHHHHHhHHHHHHhhEEEE-------EEECCCcCcCcccCCCEEEEEEeecCccCccccccccccCCCCCCCE
Confidence            36778888888888888888888863       99999999999999999999992               146899999


Q ss_pred             EEEEeCCC-CcCEEEEEEEeCCC
Q 030248           83 VVFNVDGR-EIPIVHRVIKVHER  104 (180)
Q Consensus        83 Vvf~~~~~-~~~~ihRVi~~~~~  104 (180)
                      |+|+.|.+ ...+||||+++|||
T Consensus       132 VVF~~P~~~~~~yIKRVIGlPGD  154 (324)
T PRK10861        132 VVFKYPEDPKLDYIKRVVGLPGD  154 (324)
T ss_pred             EEEecCCCCCCcEEEEeeecCCc
Confidence            99997753 35799999999987

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.70  E-value=6.1e-17  Score=113.32  Aligned_cols=78  Identities=36%  Similarity=0.557  Sum_probs=64.3

Q ss_pred             eEEEeCCCccccccCCCEEEEeecCC---CCCcCcEEEEEeCCC-CcCEEEEEEEeCCCCCCCeeEEEEecCC--CCCCC
Q 030248           50 VVVVLSGSMEPGFKRGDILFLHMSKD---PIRAGEIVVFNVDGR-EIPIVHRVIKVHERQDTGEVEVLTKGDN--NYGDD  123 (180)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~v~v~~~~~---~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~~~~g~~~~~t~GDn--n~~~D  123 (180)
                      .+.|.|+||+|++++||++++++...   +++.||+|+|+.++. ..+++||+++           |+++|||  |+..|
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~-----------~~~~gDn~~ns~d~   70 (85)
T cd06530           2 PVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG-----------YFVLGDNRNNSLDS   70 (85)
T ss_pred             eeEEcCCCCcCcccCCCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE-----------EEEeeCCCCCCCcc
Confidence            38999999999999999999998433   699999999999874 3589999988           7899999  55444


Q ss_pred             chhhccCCccccceeEeeEE
Q 030248          124 RLLYAQGQLWLKRQHIMGRA  143 (180)
Q Consensus       124 ~~~y~~~~~~v~~~~IiG~v  143 (180)
                      +..     ++++.++|+|++
T Consensus        71 ~~~-----g~~~~~~i~G~~   85 (85)
T cd06530          71 RYW-----GPVPEDDIVGKV   85 (85)
T ss_pred             CCc-----CCCcHHHeEEeC
Confidence            433     457899999975

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.70  E-value=1.2e-16  Score=113.28  Aligned_cols=84  Identities=21%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             EEeCCCccccccCCCEEEEee---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCCCCCCeeEEEEecCCCC-CCCchh
Q 030248           52 VVLSGSMEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHERQDTGEVEVLTKGDNNY-GDDRLL  126 (180)
Q Consensus        52 ~V~g~SM~Ptl~~GD~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~-~~D~~~  126 (180)
                      .|.|+||+|+|++||.+++++   ....++.||+++|+.+++ ...++||+++.+++      .+++.|||+. +.|++.
T Consensus         2 ~V~g~SM~P~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~~------~~~l~~dN~~~~~d~~~   75 (90)
T TIGR02754         2 KVTGVSMSPTLPPGDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDDN------GLFLLGDNPKASTDSRQ   75 (90)
T ss_pred             EeeCCCccCccCCCCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcCC------eEEEeCCCCCCCCcccc
Confidence            589999999999999999997   234456799999998753 36899999999764      6899999954 577765


Q ss_pred             hccCCccccceeEeeEEEE
Q 030248          127 YAQGQLWLKRQHIMGRAVG  145 (180)
Q Consensus       127 y~~~~~~v~~~~IiG~v~~  145 (180)
                      +    ++++..+|+|+|++
T Consensus        76 ~----g~v~~~~I~G~v~~   90 (90)
T TIGR02754        76 L----GPVPRSLLLGKVLW   90 (90)
T ss_pred             c----CCCcHHHEEEEEEC
Confidence            4    57899999999864

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.8e-16  Score=123.36  Aligned_cols=93  Identities=27%  Similarity=0.295  Sum_probs=77.1

Q ss_pred             EEEeCCCccccccCCCEEEE-ee---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCCC----------C---------
Q 030248           51 VVVLSGSMEPGFKRGDILFL-HM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHERQ----------D---------  106 (180)
Q Consensus        51 ~~V~g~SM~Ptl~~GD~v~v-~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~~----------~---------  106 (180)
                      ....|.||+||+.+++.+++ ++   .+..+++||||+++.|.+ .+.++|||++.+||-          +         
T Consensus        36 ~~~~gpSM~PTl~~~gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~cKRIva~eGD~v~v~~~~~~~n~~~e~~~~~  115 (176)
T KOG0171|consen   36 VMCSGPSMEPTLHDGGDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHICKRIVAMEGDLVEVHDGPLVVNDLVEKFSTP  115 (176)
T ss_pred             eeccCCCcCceecCCCcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhhhheeeccCCceEEEecCCcccchhhhhccce
Confidence            78899999998887755554 66   356679999999998743 367999999999981          1         


Q ss_pred             --CCeeEEEEecCC-CCCCCchhhccCCccccceeEeeEEEEEe
Q 030248          107 --TGEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGFL  147 (180)
Q Consensus       107 --~g~~~~~t~GDn-n~~~D~~~y~~~~~~v~~~~IiG~v~~~i  147 (180)
                        .+++++++.||| |.+.|++.|    +|++...|.||+++++
T Consensus       116 i~VP~GhVfv~GDN~~nS~DSr~y----GplP~glI~gRvv~r~  155 (176)
T KOG0171|consen  116 IRVPEGHVFVEGDNRNNSLDSRNY----GPLPMGLIQGRVVFRI  155 (176)
T ss_pred             eeccCceEEEecCCCCCccccccc----CCCchhheeeeEEEEe
Confidence              267789999999 889999987    5899999999999985

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.7e-12  Score=101.08  Aligned_cols=93  Identities=24%  Similarity=0.321  Sum_probs=78.0

Q ss_pred             EEEeCCCccccccCC------CEEEEee---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCCC-----------CCCe
Q 030248           51 VVVLSGSMEPGFKRG------DILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHERQ-----------DTGE  109 (180)
Q Consensus        51 ~~V~g~SM~Ptl~~G------D~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~~-----------~~g~  109 (180)
                      ..|.|.||.|++.++      |.|++.+   ....+.+||||+|.+|.+ ++++||||.+++++.           ..++
T Consensus        34 a~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpk  113 (174)
T KOG1568|consen   34 AQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPK  113 (174)
T ss_pred             eEEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCChhheeeeeeecccccEeccCCCCCCceecCC
Confidence            589999999999876      8999988   234588999999998843 478999999999982           0367


Q ss_pred             eEEEEecCCC-CCCCchhhccCCccccceeEeeEEEEEe
Q 030248          110 VEVLTKGDNN-YGDDRLLYAQGQLWLKRQHIMGRAVGFL  147 (180)
Q Consensus       110 ~~~~t~GDnn-~~~D~~~y~~~~~~v~~~~IiG~v~~~i  147 (180)
                      +++++.|||. .+.||+.+    |||+-..|.|+++..+
T Consensus       114 ghcWVegDn~~hs~DSntF----GPVS~gli~grai~il  148 (174)
T KOG1568|consen  114 GHCWVEGDNQKHSYDSNTF----GPVSTGLIVGRAIYIL  148 (174)
T ss_pred             CcEEEecCCcccccccCcc----CCcchhheeeeEEEEE
Confidence            8999999994 57999754    7899999999999874

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.37  E-value=2.3e-12  Score=86.53  Aligned_cols=60  Identities=35%  Similarity=0.516  Sum_probs=48.0

Q ss_pred             EEeCCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCC
Q 030248           52 VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDN  118 (180)
Q Consensus        52 ~V~g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDn  118 (180)
                      .|.|+||+|+|++||++++++. .+++.||+|+|+.++....++||+.+.+++      .+.+..+|
T Consensus         1 ~V~GdSM~P~i~~Gd~v~v~~~-~~~~~gdivv~~~~~~~~~~iKrv~~~~~~------~~~~~~~n   60 (70)
T PF00717_consen    1 RVEGDSMEPTIKDGDIVLVDPS-SEPKDGDIVVVKIDGDEELYIKRVVGEPGG------IILISSNN   60 (70)
T ss_dssp             EEESSTTGGTSSTTEEEEEEET-S---TTSEEEEEETTEESEEEEEEEEETTE------EEEE-SST
T ss_pred             CeECcCcccCeeCCCEEEEEEc-CCCccCeEEEEEECCceeeEEEEEEEeCCC------EEEEeccC
Confidence            4899999999999999999984 588999999999987634799999998864      57777655

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.35  E-value=8.1e-12  Score=85.96  Aligned_cols=83  Identities=30%  Similarity=0.409  Sum_probs=62.4

Q ss_pred             eEEEeCCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhcc
Q 030248           50 VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ  129 (180)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~  129 (180)
                      .+.|.|+||+|++.+||++++++....++.||+++++.++ ...++||+...++.     ..+.+++||....+....  
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~i~~~~~~~~~G~iv~~~~~~-~~~~ikrl~~~~~~-----~~~~l~~~N~~~~~~~~~--   73 (84)
T cd06462           2 ALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPG-GELTVKRVIGLPGE-----GHYFLLGDNPNSPDSRID--   73 (84)
T ss_pred             eeEEcCCCccCcccCCCEEEEEecCCCCcCCEEEEEEcCC-CcEEEEEEEEECCC-----CEEEEECCCCCCCccccc--
Confidence            3789999999999999999999854458999999999887 34799999998751     279999998333332221  


Q ss_pred             CCccccceeEeeEE
Q 030248          130 GQLWLKRQHIMGRA  143 (180)
Q Consensus       130 ~~~~v~~~~IiG~v  143 (180)
                      .   -++.+++|++
T Consensus        74 ~---~~~~~i~g~v   84 (84)
T cd06462          74 G---PPELDIVGVV   84 (84)
T ss_pred             C---CCHHHEEEeC
Confidence            0   1456677753

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=99.14  E-value=7.3e-10  Score=76.02  Aligned_cols=78  Identities=28%  Similarity=0.323  Sum_probs=60.3

Q ss_pred             EEEeCCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhccC
Q 030248           51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQG  130 (180)
Q Consensus        51 ~~V~g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~~  130 (180)
                      +.|.|+||+|++++||.+++++. ..++.||++++..++  ..++||+...+++      .+.+++||+...+.. .+  
T Consensus         3 ~~v~g~sM~p~i~~gd~lii~~~-~~~~~g~i~~~~~~~--~~~ikr~~~~~~~------~~~L~s~N~~~~~~~-~~--   70 (81)
T cd06529           3 LRVKGDSMEPTIPDGDLVLVDPS-DTPRDGDIVVARLDG--ELTVKRLQRRGGG------RLRLISDNPAYPPIE-ID--   70 (81)
T ss_pred             EEEECCCcCCccCCCCEEEEcCC-CCCCCCCEEEEEECC--EEEEEEEEECCCC------cEEEEeCCCCCCCEe-eC--
Confidence            78999999999999999999984 448999999999987  4699999988743      688999986443322 11  


Q ss_pred             CccccceeEeeEE
Q 030248          131 QLWLKRQHIMGRA  143 (180)
Q Consensus       131 ~~~v~~~~IiG~v  143 (180)
                         -+.-+++|++
T Consensus        71 ---~~~~~~ig~v   80 (81)
T cd06529          71 ---EEELEIVGVV   80 (81)
T ss_pred             ---hhhEEEEEEE
Confidence               1246666654

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.07  E-value=2.1e-10  Score=88.66  Aligned_cols=78  Identities=31%  Similarity=0.346  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHhhCCCCCeEEEeCCCccccccCCCEEEEeec---CCCCCcCcEEEEEeCCCCcC
Q 030248           19 VLTQGVSLGMIVTSALII--WKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---KDPIRAGEIVVFNVDGREIP   93 (180)
Q Consensus        19 ~~~~i~~i~~~i~v~~li--~~~l~~~~~~~~p~~~V~g~SM~Ptl~~GD~v~v~~~---~~~~~~GDIVvf~~~~~~~~   93 (180)
                      ...++..++.++++++++  +.+.+.       .+.|+|+||+||++.||++++++.   ...+..+|++.+-... ...
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~V~s~SM~Ptl~~GD~v~v~k~~~~~~~~~~~~~~~~~~~~-~~~   78 (166)
T COG0681           7 FLELISSLLIAIILALIIGVRTFVFE-------PVVVPSGSMEPTLNVGDRVLVKKFSYGFGKLKVPDIIVLPAVV-EGD   78 (166)
T ss_pred             HHHHHHHHHHHHHHhheeeeEEEEEE-------EEEECCCccccccccCCEEEEEeccccccCCccceeeecCCCC-Ccc
Confidence            456666777777777776  444443       499999999999999999999993   2235666665332222 245


Q ss_pred             EEEEEEEeCCC
Q 030248           94 IVHRVIKVHER  104 (180)
Q Consensus        94 ~ihRVi~~~~~  104 (180)
                      +++|+++.+||
T Consensus        79 ~~kr~~~~~GD   89 (166)
T COG0681          79 LIKRVIGLRGD   89 (166)
T ss_pred             eEEEeccCCCC
Confidence            88888888776

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.06  E-value=1.3e-09  Score=86.74  Aligned_cols=68  Identities=12%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             CCCCCcCcEEEEEeCCCC--------------------cCEEEEEEEeCCCC----C-----------------------
Q 030248           74 KDPIRAGEIVVFNVDGRE--------------------IPIVHRVIKVHERQ----D-----------------------  106 (180)
Q Consensus        74 ~~~~~~GDIVvf~~~~~~--------------------~~~ihRVi~~~~~~----~-----------------------  106 (180)
                      ..++++||+|+|+.+...                    .+++|||++++||.    +                       
T Consensus        48 ~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i~~~v~iNg~~~~~~~~~~~~~~g~~  127 (176)
T PRK13838         48 DRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEIGGSVSIDGRPLPSSSVRRRDGEGRP  127 (176)
T ss_pred             CCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEECCEEEECCEEccccccccccccCCc
Confidence            467899999999865421                    25999999999983    0                       


Q ss_pred             --------CCeeEEEEecCCCCCCCchhhccCCccccceeEeeEEEE
Q 030248          107 --------TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVG  145 (180)
Q Consensus       107 --------~g~~~~~t~GDnn~~~D~~~y~~~~~~v~~~~IiG~v~~  145 (180)
                              .++++|+++|||+.|.|+|.+    ++|++++|+|++.-
T Consensus       128 l~~~~~~~vp~g~~fvlgd~~~S~DSRy~----G~V~~~~I~G~a~p  170 (176)
T PRK13838        128 LTPFPGGVVPPGHLFLHSSFAGSYDSRYF----GPVPASGLLGLARP  170 (176)
T ss_pred             CCCCCccCcCCCeEEEECCCCCCCccccc----CcccHHHeEEEEEE
Confidence                    145679999999889999975    68999999999864

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=99.06  E-value=1.7e-09  Score=87.97  Aligned_cols=85  Identities=22%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             eEEEeCCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhcc
Q 030248           50 VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ  129 (180)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~  129 (180)
                      .+.|.|+||+|++++||.++|++. .+...||.+++...++ ..++||+...++.      .+.+..+|...++...+. 
T Consensus       125 ~i~V~GDSMeP~~~~Gd~ilVd~~-~~~~~gd~v~v~~~g~-~~~VK~l~~~~~~------~~~l~S~N~~~~~~~~~~-  195 (214)
T COG2932         125 ALRVTGDSMEPTYEDGDTLLVDPG-VNTRRGDRVYVETDGG-ELYVKKLQREPGG------LLRLVSLNPDYYPDEIFS-  195 (214)
T ss_pred             EEEEeCCcccccccCCCEEEECCC-CceeeCCEEEEEEeCC-eEEEEEEEEecCC------eEEEEeCCCCCCcccccC-
Confidence            379999999999999999999984 5567888777666653 4799999999864      566889875542322221 


Q ss_pred             CCccccc-eeEeeEEEEEe
Q 030248          130 GQLWLKR-QHIMGRAVGFL  147 (180)
Q Consensus       130 ~~~~v~~-~~IiG~v~~~i  147 (180)
                          -.. -+++|+|++..
T Consensus       196 ----~~~~v~iIgrVv~~~  210 (214)
T COG2932         196 ----EDDDVEIIGRVVWVS  210 (214)
T ss_pred             ----ccceEEEEEEEEEEe
Confidence                112 56899999864

>PRK00215 LexA repressor; Validated

Probab=98.87  E-value=3.4e-08  Score=79.67  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=63.5

Q ss_pred             eEEEeCCCcc-ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |++++||++++++. ..++.||++++..++  ..++||+....+       .+.+..||.. +++..+.
T Consensus       120 ~~~V~GdSM~~~~i~~Gd~v~v~~~-~~~~~G~ivv~~~~~--~~~vKrl~~~~~-------~~~L~s~Np~-y~~~~~~  188 (205)
T PRK00215        120 LLRVRGDSMIDAGILDGDLVIVRKQ-QTARNGQIVVALIDD--EATVKRFRREGG-------HIRLEPENPA-YEPIIVD  188 (205)
T ss_pred             EEEEccCCCCCCCcCCCCEEEEeCC-CCCCCCCEEEEEECC--EEEEEEEEEeCC-------EEEEEcCCCC-CCCEEeC
Confidence            4789999995 79999999999984 567899999999876  479999987532       5889998644 4443321


Q ss_pred             cCCccccceeEeeEEEEEec
Q 030248          129 QGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP  148 (180)
                      .     +.-.|+|+|++.+.
T Consensus       189 ~-----~~~~IiG~Vv~~~r  203 (205)
T PRK00215        189 P-----DRVTIEGKVVGLIR  203 (205)
T ss_pred             C-----CcEEEEEEEEEEEE
Confidence            1     15789999998764

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=98.84  E-value=2.2e-08  Score=79.34  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             EEeCCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCc--------------------CEEEEEEEeCCCC----C-
Q 030248           52 VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREI--------------------PIVHRVIKVHERQ----D-  106 (180)
Q Consensus        52 ~V~g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~--------------------~~ihRVi~~~~~~----~-  106 (180)
                      .=.++||-..+-    . ..+ ..++++||+|+|+.++...                    .++|||++++||.    + 
T Consensus        28 ~N~T~S~P~g~Y----~-~~~-~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpGD~V~i~~~  101 (171)
T TIGR02771        28 INTTKSLPLGLY----W-TTS-SKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPGDRVTVRAD  101 (171)
T ss_pred             EECCCCCcceEE----E-eCC-CCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCCCEEEEECC
Confidence            345567766553    2 222 4679999999999765321                    6999999999983    0 


Q ss_pred             ----C---------------------------CeeEEEEecCC-CCCCCchhhccCCccccceeEeeEEEE
Q 030248          107 ----T---------------------------GEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG  145 (180)
Q Consensus       107 ----~---------------------------g~~~~~t~GDn-n~~~D~~~y~~~~~~v~~~~IiG~v~~  145 (180)
                          |                           +++ |++.||| +.|.|||.+    ++|++++|+||+.-
T Consensus       102 ~v~INg~~~~~~~~~~~~~~g~~l~~~~~~~vp~g-yf~lgdn~~~S~DSRy~----G~V~~~~IiGk~~p  167 (171)
T TIGR02771       102 VVAINGQLLPYSKPLATDSSGRPLPPFPEGVIPPG-FFVVHDTSPTSFDSRYF----GPISREQVIGRVKP  167 (171)
T ss_pred             EEEECCEEcccccccccccCCCccccCCCcEECCC-EEEECCCCCCCCccccc----ceecHHHeEEEEEE
Confidence                0                           233 8888998 458999975    68999999999873

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.80  E-value=9.3e-08  Score=73.07  Aligned_cols=83  Identities=20%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             eEEEeCCCcc-ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |++++||++++++. ..++.||+++...++  ...+||+... +       .++++.+|.. +.+..+.
T Consensus        53 ~l~V~GdSM~~~~I~~GD~liVd~~-~~~~~Gdivv~~~~g--~~~vKrl~~~-~-------~~~L~s~N~~-y~~i~i~  120 (139)
T PRK10276         53 FVKASGDSMIDAGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLR-P-------TVQLIPMNSA-YSPITIS  120 (139)
T ss_pred             EEEEecCCCCCCCCCCCCEEEEECC-CCCCCCCEEEEEECC--EEEEEEEEEC-C-------cEEEEcCCCC-CCCEEcC
Confidence            4799999998 68999999999984 457899999998865  3689998752 2       3778888643 3333221


Q ss_pred             cCCccccceeEeeEEEEEec
Q 030248          129 QGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP  148 (180)
                          .-+.-+|+|+|++.+.
T Consensus       121 ----~~~~~~IiG~V~~~~~  136 (139)
T PRK10276        121 ----SEDTLDVFGVVTHIVK  136 (139)
T ss_pred             ----CCCcEEEEEEEEEEEE
Confidence                0124589999998763

>PRK12423 LexA repressor; Provisional

Probab=98.78  E-value=9.7e-08  Score=77.29  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=63.9

Q ss_pred             eEEEeCCCcc-ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |+|.+||.+++++. .+++.||++++..++  ..++||+.... +      .+.++.+| +.+++..+.
T Consensus       116 ~l~V~GdSM~~~~i~~Gd~viv~~~-~~~~~Gdivv~~~~~--~~~vKrl~~~~-~------~~~L~s~N-~~y~~i~~~  184 (202)
T PRK12423        116 LLQVQGDSMIDDGILDGDLVGVHRS-PEARDGQIVVARLDG--EVTIKRLERSG-D------RIRLLPRN-PAYAPIVVA  184 (202)
T ss_pred             EEEEecCcCCCCCcCCCCEEEEeCC-CcCCCCCEEEEEECC--EEEEEEEEEeC-C------EEEEEcCC-CCCCCEEcC
Confidence            4799999997 79999999999984 678899999998865  36899997653 2      58889985 444444321


Q ss_pred             cCCccccceeEeeEEEEEec
Q 030248          129 QGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP  148 (180)
                      .    -+.-.|+|+|++.+.
T Consensus       185 ~----~~~~~I~Gvv~g~~r  200 (202)
T PRK12423        185 P----DQDFAIEGVFCGLIR  200 (202)
T ss_pred             C----CCcEEEEEEEEEEEE
Confidence            1    135689999998764

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.72  E-value=1.9e-07  Score=74.91  Aligned_cols=83  Identities=30%  Similarity=0.426  Sum_probs=62.9

Q ss_pred             eEEEeCCCcc-ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |.+.+||++++++. .+++.||++++..++  ..++||+....+       .+++..||.. +.+....
T Consensus       113 ~~~V~GdSM~~~~i~~Gd~v~v~~~-~~~~~G~ivvv~~~~--~~~vKrl~~~~~-------~i~L~s~N~~-y~~i~~~  181 (199)
T TIGR00498       113 LLKVMGDSMVDAGICDGDLLIVRSQ-KDARNGEIVAAMIDG--EVTVKRFYKDGT-------KVELKPENPE-FDPIVLN  181 (199)
T ss_pred             EEEecCCCCCCCCCCCCCEEEEecC-CCCCCCCEEEEEECC--EEEEEEEEEECC-------EEEEEcCCCC-CcCCcCC
Confidence            4799999996 68999999999984 678999999999854  479999876422       5788898644 3333221


Q ss_pred             cCCccccceeEeeEEEEEec
Q 030248          129 QGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP  148 (180)
                           -+.-+|+|+|++.+.
T Consensus       182 -----~~~~~IiG~Vv~~~r  196 (199)
T TIGR00498       182 -----AEDVTILGKVVGVIR  196 (199)
T ss_pred             -----CCcEEEEEEEEEEEE
Confidence                 125789999998764

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=98.61  E-value=6.2e-07  Score=71.54  Aligned_cols=33  Identities=21%  Similarity=0.082  Sum_probs=27.9

Q ss_pred             eeEEEEecCC-CCCCCchhhccCCccccceeEeeEEEE
Q 030248          109 EVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG  145 (180)
Q Consensus       109 ~~~~~t~GDn-n~~~D~~~y~~~~~~v~~~~IiG~v~~  145 (180)
                      +++|++.||| +.+.|+|.+    ++|++++|+|++.-
T Consensus       141 ~g~~fvlgd~~~~S~DSRYf----G~V~~~~I~G~~~P  174 (178)
T PRK13884        141 ESELLLMSDVSATSFDGRYF----GPINRSQIKTVIRP  174 (178)
T ss_pred             CCEEEEECCCCCCCCccccc----CcccHHHEEEEEEE
Confidence            5689999998 568999975    68999999999863

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=98.35  E-value=6.4e-06  Score=66.97  Aligned_cols=82  Identities=27%  Similarity=0.427  Sum_probs=65.3

Q ss_pred             eEEEeCCCcc-ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. +.+.+||+|+|++ ..+.+.||+|+-..++ +...+||...-.+       .+.++-- |+.+.+..  
T Consensus       114 ~L~V~GdSM~~~gi~dGDlvvV~~-~~~a~~GdiVvA~i~g-~e~TvKrl~~~g~-------~i~L~p~-Np~~~~i~--  181 (201)
T COG1974         114 FLRVSGDSMIDAGILDGDLVVVDP-TEDAENGDIVVALIDG-EEATVKRLYRDGN-------QILLKPE-NPAYPPIP--  181 (201)
T ss_pred             EEEecCCccccCcCCCCCEEEEcC-CCCCCCCCEEEEEcCC-CcEEEEEEEEeCC-------EEEEEeC-CCCCCCcc--
Confidence            4799999998 7899999999998 4778999999999998 4589999988643       4677764 55565543  


Q ss_pred             cCCcccc--ceeEeeEEEEEec
Q 030248          129 QGQLWLK--RQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~--~~~IiG~v~~~iP  148 (180)
                           ++  .-.|+|++++.+.
T Consensus       182 -----~~~~~~~I~G~vvgv~r  198 (201)
T COG1974         182 -----VDADSVTILGKVVGVIR  198 (201)
T ss_pred             -----cCccceEEEEEEEEEEe
Confidence                 23  5789999998763

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.26  E-value=6.6e-07  Score=68.50  Aligned_cols=51  Identities=29%  Similarity=0.372  Sum_probs=24.8

Q ss_pred             cCEEEEEEEeCCCC----C-------------------------------CCeeEEEEecCC-CCCCCchhhccCCcccc
Q 030248           92 IPIVHRVIKVHERQ----D-------------------------------TGEVEVLTKGDN-NYGDDRLLYAQGQLWLK  135 (180)
Q Consensus        92 ~~~ihRVi~~~~~~----~-------------------------------~g~~~~~t~GDn-n~~~D~~~y~~~~~~v~  135 (180)
                      ..++|||++++||.    +                               .++++|++.||| ..|.|||.|    ++|+
T Consensus        50 ~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~g~~l~~~~~~~~vp~g~~~v~gd~~~~S~DSRy~----G~V~  125 (138)
T PF10502_consen   50 QPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSDGRPLPQFSGSGTVPEGEYFVLGDNRPNSFDSRYF----GPVP  125 (138)
T ss_dssp             ---------------------------------------S-T----TEEE--TTEEEEE-SBTTS--SHHHH------EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCceEeCCCEEEEecCCCCCccccCEe----cccC
Confidence            37999999999983    0                               146789999988 457999986    6899


Q ss_pred             ceeEeeEEEEE
Q 030248          136 RQHIMGRAVGF  146 (180)
Q Consensus       136 ~~~IiG~v~~~  146 (180)
                      .++|+|++.-.
T Consensus       126 ~~~I~g~~~pl  136 (138)
T PF10502_consen  126 RSQIIGKARPL  136 (138)
T ss_dssp             GGGEEEEEEEE
T ss_pred             HHHEEEEEEEE
Confidence            99999999754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.65  E-value=0.017  Score=45.21  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=26.2

Q ss_pred             eeEEEEecCC-CCCCCchhhccCCccccceeEeeEEEE
Q 030248          109 EVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG  145 (180)
Q Consensus       109 ~~~~~t~GDn-n~~~D~~~y~~~~~~v~~~~IiG~v~~  145 (180)
                      +.++++++|. +.|.|++.+    ++++.++|+|.+.=
T Consensus       134 ~~el~lL~~~~~~SfDsRYf----Gpipas~vig~aRP  167 (173)
T COG4959         134 PSELLLLTDRSSTSFDSRYF----GPIPASQVIGVARP  167 (173)
T ss_pred             CCeEEEEeccCCccccccee----cccCHHHcceeeee
Confidence            4567888886 568999975    68999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	99.74
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.34
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.32
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	99.26
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	99.19
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.99
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.95
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	97.57

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=99.74  E-value=2.1e-18  Score=142.17  Aligned_cols=54  Identities=24%  Similarity=0.421  Sum_probs=47.5

Q ss_pred             EEEeCCCccccccCCCEEEEeec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCC
Q 030248           51 VVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER  104 (180)
Q Consensus        51 ~~V~g~SM~Ptl~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~  104 (180)
                      +.|+|+||+|||++||.|++++.               ..++++||||+|+.+.. ...++|||++++||
T Consensus         9 ~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD   78 (248)
T 1b12_A            9 FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGD   78 (248)
T ss_dssp             EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTC
T ss_pred             EEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCC
Confidence            89999999999999999999983               25789999999998743 35799999999886

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.34  E-value=1.1e-11  Score=89.98  Aligned_cols=83  Identities=14%  Similarity=0.234  Sum_probs=65.3

Q ss_pred             eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD  123 (180)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|++||++++++. .+++.||+++++.++ +..++||++...+       .+++.+||+...+
T Consensus        15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~~-------~~~L~s~N~~y~~   85 (109)
T 1kca_A           15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFKKLIRDSG-------QVFLQPLNPQYPM   85 (109)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECST-TCEEEEEEEEETT-------EEEEECSSTTSCC
T ss_pred             EEEEeCcCcCCCCCCCCeeCCCCEEEEecC-CcCCCCCEEEEEECC-CeEEEEEEEEeCC-------EEEEEECCCCCCC
Confidence            4799999999      99999999999984 468999999999876 3579999998532       5789999755443


Q ss_pred             chhhccCCccccceeEeeEEEEEec
Q 030248          124 RLLYAQGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       124 ~~~y~~~~~~v~~~~IiG~v~~~iP  148 (180)
                       ...      -+..+|+|+|++.+.
T Consensus        86 -~~~------~~~~~IiG~Vv~~~~  103 (109)
T 1kca_A           86 -IPC------NESCSVVGKVIASQW  103 (109)
T ss_dssp             -EEC------CTTCEEEEEEEEEEC
T ss_pred             -EEc------CCCcEEEEEEEEEEe
Confidence             221      145789999998753

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.32  E-value=1.2e-11  Score=90.32  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             eEEEeCCCccc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~P-tl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+| ++++||++++++. .+++.||+++++.++  ..++||+...+        .+++++||+...+ ..+.
T Consensus        29 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~gdivv~~~~~--~~~vKr~~~~~--------~~~L~s~N~~y~~-~~i~   96 (116)
T 1umu_A           29 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLRP--------TVQLIPMNSAYSP-ITIS   96 (116)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETT--EEEEEEEECSS--------SCEEECSSTTSCC-EECC
T ss_pred             EEEECCCCcCCCCCCCCCEEEEEcC-CCCCCCCEEEEEECC--EEEEEEEEeCC--------cEEEECCCCCCCC-EEcC
Confidence            47899999999 8999999999984 458999999999876  47999999753        3778899754433 2221


Q ss_pred             cCCccccceeEeeEEEEEecC
Q 030248          129 QGQLWLKRQHIMGRAVGFLPY  149 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP~  149 (180)
                      .    -+.-+|+|+|++.+..
T Consensus        97 ~----~~~~~IiG~Vv~~~r~  113 (116)
T 1umu_A           97 S----EDTLDVFGVVIHVVKA  113 (116)
T ss_dssp             T----TSCEEEEEEEEEEEC-
T ss_pred             C----CCeEEEEEEEEEEEEe
Confidence            1    1356899999987643

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=99.26  E-value=5.5e-11  Score=88.85  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD  123 (180)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|++||++++++. .+++.||+++++.++. ..++||+....+       .+.+++||+...+
T Consensus        46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~-~~~~~Gdivv~~~~~~-~~~vKrl~~~~~-------~~~L~s~N~~y~~  116 (133)
T 2hnf_A           46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFAKLIRDSG-------QVFLQPLNPQYPM  116 (133)
T ss_dssp             EEECCSSTTCCC---CCCCCTTCEEEEETT-SCCCTTSEEEEEETTT-EEEEEEEEEETT-------EEEEECSSTTSCC
T ss_pred             EEEEeCCCcCCCcCCCCccCCCCEEEEccC-CCCCCCCEEEEEECCC-EEEEEEEEEeCC-------eEEEEECCCCCCC
Confidence            4789999999      99999999999984 5689999999998763 579999997532       5889999755443


Q ss_pred             chhhccCCccccceeEeeEEEEE
Q 030248          124 RLLYAQGQLWLKRQHIMGRAVGF  146 (180)
Q Consensus       124 ~~~y~~~~~~v~~~~IiG~v~~~  146 (180)
                       ...      -.+.+|+|+|++.
T Consensus       117 -~~~------~~~~~IiG~Vv~~  132 (133)
T 2hnf_A          117 -IPC------NESCSVVGKVIAS  132 (133)
T ss_dssp             -EEC------STTEEEEEEEEEE
T ss_pred             -EEc------CCCCEEEEEEEEE
Confidence             221      1467899999874

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=99.19  E-value=1.4e-10  Score=91.64  Aligned_cols=89  Identities=26%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             eEEEeCCCcccc-ccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~Pt-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+|+ |++||++++++. .+++.||++++..++  ..++||+.. +++      .+.+.+||+. +.+..+.
T Consensus       112 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~G~i~v~~~~~--~~~vKrl~~-~~~------~~~l~s~N~~-y~~~~~~  180 (202)
T 1jhf_A          112 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDD--EVTVKRLKK-QGN------KVELLPENSE-FKPIVVD  180 (202)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETT--EEEEEEEEE-ETT------EEEEECSSTT-CCCEEEE
T ss_pred             EEEECCCCCCCCCCCCCCEEEEecc-CCcCCCeEEEEEECC--EEEEEEEEE-eCC------EEEEEECCCC-CCCEEcc
Confidence            468899999999 999999999984 468999999999865  479999994 443      6889999744 3333221


Q ss_pred             cCCccccceeEeeEEEEEecCcce
Q 030248          129 QGQLWLKRQHIMGRAVGFLPYVGW  152 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP~~G~  152 (180)
                      ..   -..-+|+|+|++.+...+|
T Consensus       181 ~~---~~~~~IiG~Vv~~~r~~~~  201 (202)
T 1jhf_A          181 LR---QQSFTIEGLAVGVIRNGDW  201 (202)
T ss_dssp             TT---TSCEEEEEEEEEEEEC---
T ss_pred             CC---CCceEEEEEEEEEEEcccc
Confidence            11   1356799999998766554

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.99  E-value=4.3e-09  Score=83.10  Aligned_cols=83  Identities=23%  Similarity=0.364  Sum_probs=64.7

Q ss_pred             eEEEeCCCc-cccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM-~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+|| +|++.+||++++++. ..++.||++++..++  ..++||+....+       .+.+..||... .+..++
T Consensus       111 ~l~v~GdSM~~p~i~~GD~viv~~~-~~~~~G~ivv~~~~~--~~~vKr~~~~~~-------~~~L~~~N~~y-~~i~i~  179 (196)
T 3k2z_A          111 LLKVKGESMIEEHICDGDLVLVRRQ-DWAQNGDIVAAMVDG--EVTLAKFYQRGD-------TVELRPANREM-SSMFFR  179 (196)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTCEEEEEETT--EEEEEEEEEETT-------EEEEECSCTTS-CCEEEE
T ss_pred             EEEEeCCCcCCCCCCCCCEEEEecc-CcCCCCCEEEEEECC--cEEEEEEEEECC-------EEEEEECCCCC-CCEEec
Confidence            478999999 699999999999984 568999999999876  479999987532       68899997543 333221


Q ss_pred             cCCccccceeEeeEEEEEec
Q 030248          129 QGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~iP  148 (180)
                           -..-.|+|+|++.+.
T Consensus       180 -----~~~~~i~G~Vv~~~r  194 (196)
T 3k2z_A          180 -----AEKVKILGKVVGVFR  194 (196)
T ss_dssp             -----GGGCEEEEEEEEEEE
T ss_pred             -----CCCEEEEEEEEEEEE
Confidence                 245689999998764

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.95  E-value=2.4e-09  Score=85.91  Aligned_cols=83  Identities=14%  Similarity=0.241  Sum_probs=62.9

Q ss_pred             eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD  123 (180)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|.+||+|+|++. .+++.||++++..++. ..++||+...++       .+++..||.. +.
T Consensus       142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~-~~~~~g~ivv~~~~~~-~~~vKrl~~~~~-------~~~L~s~N~~-y~  211 (236)
T 3bdn_A          142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFKKLIRGSG-------QVFLQPLNPQ-YP  211 (236)
T ss_dssp             EEECCSSSSCCCSSCSSCCCSSCEEEECCS-SCCCTTSEEEEESTTT-CCCCEEEECCSS-------SCEEECSSTT-SC
T ss_pred             EEEEeCCCcCCCCCCCCcCCCCCEEEECCC-CCCCCCcEEEEEECCC-eEEEEEEEEcCC-------cEEEEeCCCC-CC
Confidence            3589999999      99999999999984 4789999999987643 479999997433       3668899744 33


Q ss_pred             chhhccCCccccceeEeeEEEEEec
Q 030248          124 RLLYAQGQLWLKRQHIMGRAVGFLP  148 (180)
Q Consensus       124 ~~~y~~~~~~v~~~~IiG~v~~~iP  148 (180)
                      +..+.      ..-.|+|+|++.+.
T Consensus       212 ~~~~~------~~~~IiG~Vv~~~~  230 (236)
T 3bdn_A          212 MIPCN------ESCSVVGKVIASQW  230 (236)
T ss_dssp             CBC--------CCCEEEEEEEECCC
T ss_pred             CeecC------CCcEEEEEEEEEEc
Confidence            33221      45789999998754

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=97.57  E-value=0.00026  Score=54.44  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             CCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhccCCccc
Q 030248           55 SGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWL  134 (180)
Q Consensus        55 g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~~~~~v  134 (180)
                      +++|.+.-.+||+|+|++.  ....|+++++..++  ..++||+...+++      .+.+..||.    +..++     .
T Consensus       112 ~~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~------~i~L~s~N~----~~~i~-----~  172 (189)
T 2fjr_A          112 LTDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR------KLHVAGGKV----PFECG-----I  172 (189)
T ss_dssp             CSSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT------EEEEESSSS----CEEEE-----T
T ss_pred             CCCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC------EEEEEeCCC----CeEec-----c
Confidence            3466666689999999986  47889999999876  4799999986543      688899974    22211     1


Q ss_pred             cceeEeeEEEEEec
Q 030248          135 KRQHIMGRAVGFLP  148 (180)
Q Consensus       135 ~~~~IiG~v~~~iP  148 (180)
                      ..-.|+|+|++.+.
T Consensus       173 ~~i~IiG~Vv~~~r  186 (189)
T 2fjr_A          173 DDIKTLGRVVGVYS  186 (189)
T ss_dssp             TSSEEEEEEEEEEE
T ss_pred             cceEEEEEEEEEEE
Confidence            45679999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	99.7
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	99.19
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	99.18
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.84

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2e-17  Score=133.20  Aligned_cols=54  Identities=24%  Similarity=0.421  Sum_probs=46.6

Q ss_pred             EEEeCCCccccccCCCEEEEeec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCC
Q 030248           51 VVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER  104 (180)
Q Consensus        51 ~~V~g~SM~Ptl~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~  104 (180)
                      +.|+|+||+|||+.||+++|+|.               ...+++||+|+|+.+.. ...++|||++++||
T Consensus         8 f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pGD   77 (247)
T d1b12a_           8 FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGD   77 (247)
T ss_dssp             EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTC
T ss_pred             EEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCccccccccCCCCC
Confidence            99999999999999999999872               13579999999997753 35799999999876

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.19  E-value=1.3e-10  Score=81.55  Aligned_cols=80  Identities=15%  Similarity=0.279  Sum_probs=61.9

Q ss_pred             EEEeCCCc------cccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCc
Q 030248           51 VVVLSGSM------EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR  124 (180)
Q Consensus        51 ~~V~g~SM------~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~  124 (180)
                      +.|.|+||      +|.|++||+|++++. .+++.||+|++..++. ..++||+....+       .++++.||... .+
T Consensus         8 l~V~GdSM~~~~~~ep~i~~Gd~viVd~~-~~~~~g~ivva~~~~~-~~~vKr~~~~~~-------~~~L~s~N~~y-~~   77 (101)
T d1f39a_           8 LEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFKKLIRDSG-------QVFLQPLNPQY-PM   77 (101)
T ss_dssp             EECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECTTS-CEEEEEEEEETT-------EEEEECSSTTS-CC
T ss_pred             EEEeCCccCCCcccCCCcCCCCEEEEEec-CccCCCCEEEEEECCC-eEEEEEEEEcCC-------EEEEEECCCCC-CC
Confidence            68999999      899999999999984 6789999998877765 368999986533       57889997543 33


Q ss_pred             hhhccCCccccceeEeeEEEEE
Q 030248          125 LLYAQGQLWLKRQHIMGRAVGF  146 (180)
Q Consensus       125 ~~y~~~~~~v~~~~IiG~v~~~  146 (180)
                      ...      -...+|+|+|+++
T Consensus        78 i~~------~~~~~IiG~Vv~s   93 (101)
T d1f39a_          78 IPC------NESCSVVGKVIAS   93 (101)
T ss_dssp             EEC------STTCEEEEEEEEE
T ss_pred             CcC------CCCcEEEEEEEEE
Confidence            221      1356899999986

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.2e-10  Score=84.74  Aligned_cols=84  Identities=27%  Similarity=0.338  Sum_probs=65.0

Q ss_pred             eEEEeCCCcccc-ccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM~Pt-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+|+ +++||++++++. .+++.||++++..++.  .++||+....+       .+++..||+. +.+..+.
T Consensus        40 ~lrV~GdSM~~~~i~~gd~viv~~~-~~~~~G~ivv~~~~ge--~~vKrl~~~~~-------~~~L~s~N~~-y~pi~~~  108 (126)
T d1jhfa2          40 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDDE--VTVKRLKKQGN-------KVELLPENSE-FKPIVVD  108 (126)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETTE--EEEEEEEEETT-------EEEEECSSTT-CCCEEEE
T ss_pred             EEEEcCCcccCcccCCCEEEEEecc-ccccCCCEEEEEECCE--EEEEEEEEcCC-------EEEEecCCcC-CCCeEcc
Confidence            479999999997 999999999984 6789999999999863  69999987543       5889999644 4443222


Q ss_pred             cCCccccceeEeeEEEEEe
Q 030248          129 QGQLWLKRQHIMGRAVGFL  147 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~i  147 (180)
                      ..+   ..-.|+|+|++.+
T Consensus       109 ~~~---~~~~IiG~Vv~vi  124 (126)
T d1jhfa2         109 LRQ---QSFTIEGLAVGVI  124 (126)
T ss_dssp             TTT---SCEEEEEEEEEEE
T ss_pred             CCC---CcEEEEEEEEEEE
Confidence            111   3457999999876

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.2e-08  Score=71.95  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=60.8

Q ss_pred             eEEEeCCCc-cccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248           50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA  128 (180)
Q Consensus        50 ~~~V~g~SM-~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+|| .|.+.+||++++++. .+++.||+++...++.  .++||... .+       ...++.+| +.+++....
T Consensus        22 ~~rV~GdSM~~~gI~~GDlliVd~~-~~~~~g~ivva~i~ge--~~vKrl~~-~~-------~~~L~~~N-~~y~~i~i~   89 (105)
T d1umua_          22 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDGE--FTVKKLQL-RP-------TVQLIPMN-SAYSPITIS   89 (105)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETTE--EEEEEEEC-SS-------SCEEECSS-TTSCCEECC
T ss_pred             EEEEcCCccccCccCCCCEEEEEcc-cccccCcEEEEEECCE--EEEEEEEE-CC-------cEEEECCC-CCCCCEEcC
Confidence            379999999 588999999999994 6789999999999874  69999753 22       24466775 445544322


Q ss_pred             cCCccccceeEeeEEEEEe
Q 030248          129 QGQLWLKRQHIMGRAVGFL  147 (180)
Q Consensus       129 ~~~~~v~~~~IiG~v~~~i  147 (180)
                      .    -+.-.|+|+|++.+
T Consensus        90 ~----~~~~~I~GvVv~vi  104 (105)
T d1umua_          90 S----EDTLDVFGVVIHVV  104 (105)
T ss_dssp             T----TSCEEEEEEEEEEE
T ss_pred             C----CCCEEEEEEEEEEE
Confidence            1    13467999999876