Citrus Sinensis ID: 030254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEcccccccccEEEEEEccccccEEEEEEEEEEEEcccEEEEEEEccccccccHHHHcccccccEEEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccEEEEEccccccccccccEEEEEccccccEEcEEEEEEEccccccEEEEEEEEEcccccccEEEEEccccccccccHcccccccEccHccEEEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLmcitgsesPVVVVLSesmepgfqrgDILFLQmskdpirtgeIVVFNiqgrdipiVHRVIEVHEqrqsgevriltkgdnndvddrMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Flexible Loop (DISEMBL)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEvheqrqsgevriltkgdnndvDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Low Complexity Region (SEG)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGsespvvvvlsesmePGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Disordered region (IsUnstruct)
************SMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVIT***
Disordered Region (DISOPRED)
*******IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Disordered Region (DISEMBL)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Disordered Region (DISPRO)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q5RC30	192	Signal peptidase complex	yes	no	0.944	0.885	0.581	4e-54
Q9BY50	192	Signal peptidase complex	yes	no	0.944	0.885	0.581	4e-54
Q9WTR7	192	Signal peptidase complex	yes	no	0.944	0.885	0.575	7e-54
P13679	192	Signal peptidase complex	yes	no	0.944	0.885	0.575	7e-54
Q9D8V7	192	Signal peptidase complex	yes	no	0.944	0.885	0.575	8e-54
Q5R9C7	179	Signal peptidase complex	no	no	0.872	0.877	0.610	6e-52
P67812	179	Signal peptidase complex	no	no	0.872	0.877	0.610	6e-52
P67811	179	Signal peptidase complex	no	no	0.872	0.877	0.610	6e-52
P67810	179	Signal peptidase complex	no	no	0.872	0.877	0.610	6e-52
Q9R0P6	179	Signal peptidase complex	no	no	0.872	0.877	0.610	1e-51

>sp|Q5RC30|SC11C_PONAB Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 130/172 (75%), Gaps = 2/172 (1%)

Query: 10  SVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILF 69
            +K M  R   +Q +   MIVSSAL+IWKGL+ +TGSESP+VVVLS SMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128
           L    +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9

>sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 130/172 (75%), Gaps = 2/172 (1%)

Query: 10  SVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILF 69
            +K M  R   +Q +   MIVSSAL+IWKGL+ +TGSESP+VVVLS SMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128
           L    +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9WTR7|SC11C_RAT Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3

 Score =  209 bits (533), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 130/172 (75%), Gaps = 2/172 (1%)

Query: 10  SVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILF 69
            ++ M  R   +Q +   MIVSSAL+IWKGL+ +TGSESP+VVVLS SMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128
           L    +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P13679|SC11C_CANFA Signal peptidase complex catalytic subunit SEC11C OS=Canis familiaris GN=SEC11C PE=1 SV=3

 Score =  209 bits (533), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 130/172 (75%), Gaps = 2/172 (1%)

Query: 10  SVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILF 69
            ++ M  R   +Q +   MIVSSAL+IWKGL+ +TGSESP+VVVLS SMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128
           L    +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9D8V7|SC11C_MOUSE Signal peptidase complex catalytic subunit SEC11C OS=Mus musculus GN=Sec11c PE=2 SV=3

 Score =  209 bits (532), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 130/172 (75%), Gaps = 2/172 (1%)

Query: 10  SVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILF 69
            ++ M  R   +Q +   MIVSSAL+IWKGL+ +TGSESP+VVVLS SMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128
           L    +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY 
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYK 139

Query: 129 QGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
           +GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct: 140 EGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q5R9C7|SC11A_PONAB Signal peptidase complex catalytic subunit SEC11A OS=Pongo abelii GN=SEC11A PE=2 SV=1

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 8   IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDI 67
           ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITGSESP+VVVLS SMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
           LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query: 127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKY 165
           Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY
Sbjct: 126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67812|SC11A_HUMAN Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens GN=SEC11A PE=1 SV=1

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 8   IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDI 67
           ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITGSESP+VVVLS SMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
           LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query: 127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKY 165
           Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY
Sbjct: 126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67811|SC11A_CANFA Signal peptidase complex catalytic subunit SEC11A OS=Canis familiaris GN=SEC11A PE=1 SV=1

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 8   IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDI 67
           ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITGSESP+VVVLS SMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
           LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query: 127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKY 165
           Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY
Sbjct: 126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67810|SC11A_BOVIN Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus GN=SEC11A PE=2 SV=1

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 8   IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDI 67
           ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITGSESP+VVVLS SMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
           LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query: 127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKY 165
           Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY
Sbjct: 126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9R0P6|SC11A_MOUSE Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus GN=Sec11a PE=2 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 123/159 (77%), Gaps = 2/159 (1%)

Query: 8   IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDI 67
           ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITGSESP+VVVLS SMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
           LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q G ++ LTKGDNN VDDR L
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQDGHIKFLTKGDNNAVDDRGL 125

Query: 127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKY 165
           Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY
Sbjct: 126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
255553143	180	Microsomal signal peptidase 18 kDa subun	1.0	1.0	0.805	7e-80
224054124	180	predicted protein [Populus trichocarpa]	1.0	1.0	0.8	1e-79
356561967	180	PREDICTED: signal peptidase complex cata	1.0	1.0	0.8	2e-79
118483871	180	unknown [Populus trichocarpa]	1.0	1.0	0.788	3e-79
224070829	180	predicted protein [Populus trichocarpa]	1.0	1.0	0.8	3e-79
317106733	180	JHL06P13.9 [Jatropha curcas]	1.0	1.0	0.794	4e-79
449468994	180	PREDICTED: signal peptidase complex cata	1.0	1.0	0.8	5e-79
363808256	180	uncharacterized protein LOC100807064 [Gl	1.0	1.0	0.788	5e-79
388510744	180	unknown [Lotus japonicus]	1.0	1.0	0.794	5e-79
15219044	180	signal peptidase, endoplasmic reticulum-	1.0	1.0	0.794	5e-79

>gi|255553143|ref|XP_002517614.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis] gi|223543246|gb|EEF44778.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis]

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 164/180 (91%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGE+++S+KS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIRTGEIVVFN+ GR+IPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054124|ref|XP_002298104.1| predicted protein [Populus trichocarpa] gi|222845362|gb|EEE82909.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 165/180 (91%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIG++++S+KS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIRTGEIVVFN+ GR+IPIVHRVI+VHE++ +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561967|ref|XP_003549247.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Glycine max]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 162/180 (90%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGES++S+KS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGESVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GR+IPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYA GQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483871|gb|ABK93826.1| unknown [Populus trichocarpa]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 165/180 (91%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIG++++S+KS++IR  L Q ++LGMIV+SAL++WK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALVVWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIRTGEIVVFN+ GR+IPIVHRVI+VHE++ +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070829|ref|XP_002303254.1| predicted protein [Populus trichocarpa] gi|222840686|gb|EEE78233.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 164/180 (91%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIG++++SVKS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGDTVDSVKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GR+IPIVHRVI+VHE++ +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106733|dbj|BAJ53229.1| JHL06P13.9 [Jatropha curcas]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 164/180 (91%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIG++++S+KS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGDNVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GR+IPIVHRVI+VHE++ +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468994|ref|XP_004152206.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus] gi|449484166|ref|XP_004156804.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 163/180 (90%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGE+++S+KS++IR  L Q ++LGMIV+SALIIWK LMCITGSESPVVVVLS SMEP
Sbjct: 1   MGWIGETMDSIKSLQIRQVLSQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GR+IPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERPDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYAQGQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808256|ref|NP_001242493.1| uncharacterized protein LOC100807064 [Glycine max] gi|255635143|gb|ACU17928.1| unknown [Glycine max]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 162/180 (90%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGE+++S+KS++IR  L Q ++LGMIV+SALIIWK LMC+TGSESPVVVVLS SMEP
Sbjct: 1   MGWIGETVDSIKSLRIRQVLTQAVSLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GR+IPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYA GQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510744|gb|AFK43438.1| unknown [Lotus japonicus]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 163/180 (90%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGE+++SVKS++IR  L Q +TLGMIV+SALIIWK LMC+TGSESPVVVVLS SMEP
Sbjct: 1   MGWIGETVDSVKSLQIRQVLTQAVTLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL+MSK+PIR GEIVVFN+ GR+IPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLRMSKEPIRAGEIVVFNVDGREIPIVHRVIKVHEREDNGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYA GQ WL++ HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219044|ref|NP_175669.1| signal peptidase, endoplasmic reticulum-type [Arabidopsis thaliana] gi|297847646|ref|XP_002891704.1| hypothetical protein ARALYDRAFT_474386 [Arabidopsis lyrata subsp. lyrata] gi|5903045|gb|AAD55604.1|AC008016_14 Similar to gb|AF108945 signal peptidase 18 kDa subunit from Homo sapiens. ESTs gb|H76629, gb|H76949 and gb|H76216 come from this gene [Arabidopsis thaliana] gi|17381152|gb|AAL36388.1| putative signal peptidase subunit [Arabidopsis thaliana] gi|20465737|gb|AAM20337.1| putative signal peptidase subunit [Arabidopsis thaliana] gi|21536563|gb|AAM60895.1| signal peptidase subunit, putative [Arabidopsis thaliana] gi|297337546|gb|EFH67963.1| hypothetical protein ARALYDRAFT_474386 [Arabidopsis lyrata subsp. lyrata] gi|332194707|gb|AEE32828.1| signal peptidase, endoplasmic reticulum-type [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 161/180 (89%)

Query: 1   MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEP 60
           MGWIGE+++S+KS++IR    Q I+LGMIV+SALIIWK LMC+TGSESPVVVVLS SMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
           GF+RGDILFL MSKDPIR GEIVVFN+ GRDIPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNY 120

Query: 121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
            DDR+LYA+GQ WL + HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 121 GDDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2035139	180	AT1G52600 [Arabidopsis thalian	1.0	1.0	0.722	1.5e-67
TAIR|locus:2093202	180	AT3G15710 [Arabidopsis thalian	1.0	1.0	0.688	1.2e-63
UNIPROTKB|P67810	179	SEC11A "Signal peptidase compl	0.955	0.960	0.511	5e-44
UNIPROTKB|P67811	179	SEC11A "Signal peptidase compl	0.955	0.960	0.511	5e-44
UNIPROTKB|P67812	179	SEC11A "Signal peptidase compl	0.955	0.960	0.511	5e-44
MGI|MGI:1929464	179	Sec11a "SEC11 homolog A (S. ce	0.955	0.960	0.511	6.4e-44
UNIPROTKB|F1NHX6	192	SEC11A "Uncharacterized protei	0.955	0.895	0.5	1e-43
UNIPROTKB|Q5ZMQ3	179	SEC11A "Uncharacterized protei	0.955	0.960	0.5	1e-43
UNIPROTKB|Q9BY50	192	SEC11C "Signal peptidase compl	0.938	0.880	0.514	1.3e-43
RGD|628665	192	Sec11c "SEC11 homolog C (S. ce	0.938	0.880	0.508	2.2e-43

TAIR|locus:2035139 AT1G52600 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 130/180 (72%), Positives = 148/180 (82%)

Query:     1 MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXP 60
             MGWIGE+++S+KS++IR    Q I+LGMIV+SALIIWK LMC+TG              P
Sbjct:     1 MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query:    61 GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
             GF+RGDILFL MSKDPIR GEIVVFN+ GRDIPIVHRVI+VHE+  +GEV +LTKGDNN 
Sbjct:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNY 120

Query:   121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
              DDR+LYA+GQ WL + HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   121 GDDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2093202 AT3G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 124/180 (68%), Positives = 146/180 (81%)

Query:     1 MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXP 60
             MG+IGE+++S+KS+KIR  L Q ITLGMIV+SALIIWK L+C+TG              P
Sbjct:     1 MGFIGETVDSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEP 60

Query:    61 GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND 120
             GFQRGDILFL+M+ +PIR GEIVVF++ GR+IPIVHR I+VHE+  +  V +LTKGDNND
Sbjct:    61 GFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNND 120

Query:   121 VDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             +DD  LYA+GQ WL + HIMGRAVGFLPYVGW TIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   121 IDDIGLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P67810 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/174 (51%), Positives = 120/174 (68%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITG              P F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P67811 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Canis lupus familiaris (taxid:9615)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/174 (51%), Positives = 120/174 (68%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITG              P F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P67812 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/174 (51%), Positives = 120/174 (68%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITG              P F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G ++ LTKGDNN VDDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

MGI|MGI:1929464 Sec11a "SEC11 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 89/174 (51%), Positives = 119/174 (68%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM ITG              P F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q G ++ LTKGDNN VDDR L
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQDGHIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y QGQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|F1NHX6 SEC11A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 87/174 (50%), Positives = 121/174 (69%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM +TG              P F RGD+
Sbjct:    20 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDL 79

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G+++ LTKGDNN VDDR L
Sbjct:    80 LFLTNRIEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGDIKFLTKGDNNAVDDRGL 138

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y +GQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   139 YKRGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 192

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZMQ3 SEC11A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 87/174 (50%), Positives = 121/174 (69%)

Query:     8 IESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDI 67
             ++ V+ M  R   +Q +  GMIVSSAL+IWKGLM +TG              P F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRML 126
             LFL    +DPIR GEIVVF I+GR+IPIVHRV+++HE +Q+G+++ LTKGDNN VDDR L
Sbjct:    67 LFLTNRIEDPIRVGEIVVFRIEGREIPIVHRVLKIHE-KQNGDIKFLTKGDNNAVDDRGL 125

Query:   127 YAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             Y +GQ WL+++ ++GRA GF+PY+G  TI+M + P  KY ++  LGL V+  ++
Sbjct:   126 YKRGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BY50 SEC11C "Signal peptidase complex catalytic subunit SEC11C" [Homo sapiens (taxid:9606)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 88/171 (51%), Positives = 117/171 (68%)

Query:    11 VKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDILFL 70
             +K M  R   +Q +   MIVSSAL+IWKGL+ +TG              P F RGD+LFL
Sbjct:    22 LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFL 81

Query:    71 -QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQ 129
                 +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY +
Sbjct:    82 TNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYKE 140

Query:   130 GQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct:   141 GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

RGD|628665 Sec11c "SEC11 homolog C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 87/171 (50%), Positives = 117/171 (68%)

Query:    11 VKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGXXXXXXXXXXXXXXPGFQRGDILFL 70
             ++ M  R   +Q +   MIVSSAL+IWKGL+ +TG              P F RGD+LFL
Sbjct:    22 LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFL 81

Query:    71 -QMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQ 129
                 +DPIR GEIVVF ++GRDIPIVHRVI+VHE + +G+++ LTKGDNN+VDDR LY +
Sbjct:    82 TNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE-KDNGDIKFLTKGDNNEVDDRGLYKE 140

Query:   130 GQFWLKQEHIMGRAVGFLPYVGWATIIMTEKPIIKYILIGALGLLVITSKD 180
             GQ WL+++ ++GRA GFLPYVG  TIIM + P  KY L+  +G  V+  ++
Sbjct:   141 GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BY50	SC11C_HUMAN	3, ., 4, ., 2, 1, ., 8, 9	0.5813	0.9444	0.8854	yes	no
Q9WTR7	SC11C_RAT	3, ., 4, ., 2, 1, ., 8, 9	0.5755	0.9444	0.8854	yes	no
Q4WYF4	SEC11_ASPFU	3, ., 4, ., 2, 1, ., 8, 9	0.4469	0.9111	0.8541	yes	no
P13679	SC11C_CANFA	3, ., 4, ., 2, 1, ., 8, 9	0.5755	0.9444	0.8854	yes	no
Q86JD4	SEC11_DICDI	3, ., 4, ., 2, 1, ., 8, 9	0.5408	0.8777	0.8826	yes	no
C4QXP7	SEC11_PICPG	3, ., 4, ., 2, 1, ., 8, 9	0.4615	0.9	0.9473	yes	no
Q5B8K4	SEC11_EMENI	3, ., 4, ., 2, 1, ., 8, 9	0.45	0.9111	0.8541	yes	no
Q6BP15	SEC11_DEBHA	3, ., 4, ., 2, 1, ., 8, 9	0.4821	0.9222	0.9940	yes	no
A3LXS1	SEC11_PICST	3, ., 4, ., 2, 1, ., 8, 9	0.5060	0.8888	0.9638	yes	no
Q5RC30	SC11C_PONAB	3, ., 4, ., 2, 1, ., 8, 9	0.5813	0.9444	0.8854	yes	no
Q9D8V7	SC11C_MOUSE	3, ., 4, ., 2, 1, ., 8, 9	0.5755	0.9444	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0435 SubName- Full=Putative uncharacterized protein; (180 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
TIGR02228	158	TIGR02228, sigpep_I_arch, signal peptidase I, arch	1e-19
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	4e-17
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	2e-14
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	9e-09
cd06529	81	cd06529, S24_LexA-like, Peptidase S24 LexA-like pr	0.004
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	0.004

>gnl|CDD|131283 TIGR02228, sigpep_I_arch, signal peptidase I, archaeal type

 Score = 80.6 bits (199), Expect = 1e-19
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 24/166 (14%)

Query: 14  MKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQMS 73
            KI + ++ FI + ++V   L    GL+       PVVVVLS SMEP F  GD++ +   
Sbjct: 1   KKISNVIY-FILIILLVILLLY---GLVSKASGPDPVVVVLSGSMEPTFNTGDLILVT-G 55

Query: 74  KDP--IRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQ 131
            DP  I+ G+++ +   G + P+ HRVIE+      GE+  +TKGDNN   D        
Sbjct: 56  ADPNDIQVGDVITYKSPGFNTPVTHRVIEI--NNSGGELGFITKGDNNPAPD-------G 106

Query: 132 FWLKQEHIMGRAVGF-LPYVGWATIIMTEKPIIKYILIGALGLLVI 176
             +  E+++G+ +GF +P+ G+  +   +        IGA  LL+I
Sbjct: 107 EPVPSENVIGKYLGFTIPFAGYVLVFAPQA-------IGAAALLII 145

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I. Length = 158

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 71.8 bits (177), Expect = 4e-17
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 49  PVVVVLSESMEPGFQRGDILFLQM---SKDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQ 104
             VVV   SMEP  Q GD++ +          + G++VVF   G    PI+ RVI     
Sbjct: 1   EPVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIGY--- 57

Query: 105 RQSGEVRILTKGDN--NDVDDRMLYAQGQFWLKQEHIMGRA 143
                      GDN  N +D R         + ++ I+G+ 
Sbjct: 58  --------FVLGDNRNNSLDSRYWGP-----VPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 49  PVVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSG 108
             + V  +SMEP    GD++ +  S    + G+IVVF + G     V RVI +      G
Sbjct: 1   FALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPG-GELTVKRVIGLP-----G 54

Query: 109 EVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRA 143
           E      GDN +  D  +         +  I+G  
Sbjct: 55  EGHYFLLGDNPNSPDSRIDG-----PPELDIVGVV 84

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 52  VVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQR 105
            V  +SMEP    GD+L +  + +P R G+IVV  + G +   V R+I +    
Sbjct: 1   RVKGDSMEPTIPDGDLLLVDKTSEPKR-GDIVVARLDG-EEATVKRLIGLPGDI 52

Length = 69

>gnl|CDD|119397 cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 50 VVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGR 90
           + V  +SMEP    GD++ +  S D  R G+IVV  + G 
Sbjct: 2  ALRVKGDSMEPTIPDGDLVLVDPS-DTPRDGDIVVARLDGE 41

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response. Length = 81

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 12 KSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFL 70
          K +++  SL   I L +I+     ++             VVV S SMEP    GD + +
Sbjct: 6  KFLELISSLLIAIILALIIGVRTFVF-----------EPVVVPSGSMEPTLNVGDRVLV 53

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	100.0
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.97
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	99.85
PRK10861	324	signal peptidase I; Provisional	99.74
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.69
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.68
KOG0171	176	consensus Mitochondrial inner membrane protease, s	99.68
KOG1568	174	consensus Mitochondrial inner membrane protease, s	99.53
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.37
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.34
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.21
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	99.11
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	99.03
COG2932	214	Predicted transcriptional regulator [Transcription	98.97
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	98.93
PRK13884	178	conjugal transfer peptidase TraF; Provisional	98.82
PRK00215	205	LexA repressor; Validated	98.75
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.69
PRK12423	202	LexA repressor; Provisional	98.64
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.59
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	98.57
COG1974	201	LexA SOS-response transcriptional repressors (RecA	98.09
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	95.49
PF05582	287	Peptidase_U57: YabG peptidase U57; InterPro: IPR00	81.77
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	80.12

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=262.11  Aligned_cols=179  Identities=58%  Similarity=0.994  Sum_probs=170.3

Q ss_pred             CcchHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCeEEEcCCCccccCcCCCEEEEEe-cCCCCCc
Q 030254            1 MGWIGESIESVKSMKIRDSLFQFITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQM-SKDPIRT   79 (180)
Q Consensus         1 ~~~~~~~~~~~~~~~~r~~~~~i~~~~~~i~i~~~i~~~l~~~~~~~~p~~~V~~~SM~P~l~~GD~v~v~~-~~~~~~~   79 (180)
                      |.|..|.+...|.|++|+.+.+++++++++..++++|..+.+++++++|+++|.|+||||.+++||+++..+ ..+..+.
T Consensus         1 ~~~~~~~~~~~k~mn~Rq~l~Q~ln~~mivssA~MiwK~l~vvt~seSPiVVVLSgSMePaF~RGDlLfL~N~~~~p~~v   80 (180)
T KOG3342|consen    1 MLVSLEMFDDLKRMNIRQLLYQVLNFAMIVSSAYMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNRNEDPIRV   80 (180)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeCCCCCEEEEEcCCcCcccccccEEEEecCCCCccee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999986 5577899


Q ss_pred             CcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhccCCceeccceEeeEEEEEEcCcceeeeeccc
Q 030254           80 GEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVGFLPYVGWATIIMTE  159 (180)
Q Consensus        80 GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~~~~~~V~~~~IiG~v~~~iP~~G~~~~~~~~  159 (180)
                      |||++|+.++++.|++|||+...+. ++++..|.||||||...|...|++++.+.++++|+|++.+..||+|++++|+++
T Consensus        81 GdivVf~vegR~IPiVHRviK~he~-~~~~~~~LTKGDNN~~dD~~Ly~~gq~~L~r~~Ivg~~~G~~Py~G~itI~mnd  159 (180)
T KOG3342|consen   81 GDIVVFKVEGREIPIVHRVIKQHEK-SNGHIKFLTKGDNNAVDDRGLYAQGQNWLERKDIVGRVRGYLPYVGMITIWMND  159 (180)
T ss_pred             ccEEEEEECCccCchhHHHHHHhcc-cCCcEEEEecCCCCcccchhcccccccceeccceeeEEeeccccceEEEEEecC
Confidence            9999999999999999999999875 357778999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhhcCC
Q 030254          160 KPIIKYILIGALGLLVITSKD  180 (180)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~  180 (180)
                      .|..+|+++|.+|+.++++||
T Consensus       160 ~p~~KyalL~~lGl~vL~~rE  180 (180)
T KOG3342|consen  160 YPKLKYALLGGLGLSVLLHRE  180 (180)
T ss_pred             CcchHHHHHHHHHHheeeccC
Confidence            999999999999999999997

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.97  E-value=9.8e-30  Score=199.92  Aligned_cols=143  Identities=29%  Similarity=0.545  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCeEEEcCCCccccCcCCCEEEEEe-cCCCCCcCcEEEEEeCCCCcCEEEEEEEe
Q 030254           23 FITLGMIVSSALIIWKGLMCITGSESPVVVVLSESMEPGFQRGDILFLQM-SKDPIRTGEIVVFNIQGRDIPIVHRVIEV  101 (180)
Q Consensus        23 i~~~~~~i~i~~~i~~~l~~~~~~~~p~~~V~~~SM~P~l~~GD~v~v~~-~~~~~~~GDIVvf~~~~~~~~~ihRVi~~  101 (180)
                      ++.+++.+++.++++..+....++..|.++|.|+||+|++++||++++++ ..+++++||||+|+.++++.+++|||+++
T Consensus         6 ii~~~~~~~l~~~~~~~l~~~~~~~~p~v~V~g~SM~Ptl~~GD~vlv~~~~~~~~~~GDIVvf~~~~~~~~iihRVi~v   85 (158)
T TIGR02228         6 VIYFILIILLVILLLYGLVSKASGPDPVVVVLSGSMEPTFNTGDLILVTGADPNDIQVGDVITYKSPGFNTPVTHRVIEI   85 (158)
T ss_pred             HHHHHHHHHHHHHHHHHheeeccCCCcEEEEcCCCCcCCccCCCEEEEEecccCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence            33344333333333333444455567867799999999999999999997 56789999999999987656899999999


Q ss_pred             cccccCCeeEEEEeccCCCCcchhhhccCCceeccceEeeEEE-EEEcCcceeeeecccchhHHHHHHHHHHHhh
Q 030254          102 HEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAV-GFLPYVGWATIIMTEKPIIKYILIGALGLLV  175 (180)
Q Consensus       102 ~~d~~~g~~~~~t~GDnn~~~D~~~y~~~~~~V~~~~IiG~v~-~~iP~~G~~~~~~~~~~~~~~~l~~~~~~~~  175 (180)
                      .++  +++..|+||||||..+|+.       ++++++|+|++. +.+|++|+...++++... ..+++++.+++.
T Consensus        86 ~~~--~g~~~~~tkGDnN~~~D~~-------~v~~~~IiG~v~~~~iP~~G~~~~~~~~~~~-~~~~~~~p~~~~  150 (158)
T TIGR02228        86 NNS--GGELGFITKGDNNPAPDGE-------PVPSENVIGKYLGFTIPFAGYVLVFAPQAIG-AAALLIIPGIGL  150 (158)
T ss_pred             ECC--CCcEEEEEEecCCCCCCcc-------cCCHHHEEEEEEEeccCcccEEEEEeecCch-hhhhHHhHHHHH
Confidence            865  3556799999999998854       589999999999 789999999999999554 555555444443

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=99.85  E-value=1e-20  Score=148.96  Aligned_cols=97  Identities=25%  Similarity=0.408  Sum_probs=81.0

Q ss_pred             cCeEEEcCCCccccCcCCCEEEEEec---CCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc----c-----C-------
Q 030254           48 SPVVVVLSESMEPGFQRGDILFLQMS---KDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR----Q-----S-------  107 (180)
Q Consensus        48 ~p~~~V~~~SM~P~l~~GD~v~v~~~---~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~----~-----~-------  107 (180)
                      .+ +.|.|+||+|||++||++++++.   ..++++||||+|+.+++ +..++|||++++||+    +     |       
T Consensus        21 ~~-~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~pGd~v~i~~~~l~vNg~~~~~~   99 (163)
T TIGR02227        21 FP-YKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLPGDKVEFRDGKLYINGKKIDEP   99 (163)
T ss_pred             EE-EEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEecCCCEEEEECCEEEECCEECccc
Confidence            45 89999999999999999999982   37899999999998743 357999999999885    0     0       


Q ss_pred             -----------------------CeeEEEEeccCC-CCcchhhhccCCceeccceEeeEEEE-EEcC
Q 030254          108 -----------------------GEVRILTKGDNN-DVDDRMLYAQGQFWLKQEHIMGRAVG-FLPY  149 (180)
Q Consensus       108 -----------------------g~~~~~t~GDnn-~~~D~~~y~~~~~~V~~~~IiG~v~~-~iP~  149 (180)
                                             ++++|+++|||+ .+.|||.|    |+|++++|+||+.. .||.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~----G~V~~~~I~Gk~~~~~~p~  162 (163)
T TIGR02227       100 YLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYF----GFVPIDDIIGKVSFVFYPF  162 (163)
T ss_pred             ccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCc----CcCCHHHeEEEEEEEECCC
Confidence                                   356899999996 46899975    68999999999986 4664

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>PRK10861 signal peptidase I; Provisional

Probab=99.74  E-value=3e-17  Score=142.00  Aligned_cols=60  Identities=23%  Similarity=0.405  Sum_probs=50.4

Q ss_pred             ccccCeEEEcCCCccccCcCCCEEEEEe-c--------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc
Q 030254           45 GSESPVVVVLSESMEPGFQRGDILFLQM-S--------------KDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR  105 (180)
Q Consensus        45 ~~~~p~~~V~~~SM~P~l~~GD~v~v~~-~--------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~  105 (180)
                      +...| +.|+|+||+|||..||.++++| .              ..++++||||+|+.|.+ +..++|||++++||+
T Consensus        80 fv~~~-~~Ips~SM~PTL~~GD~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDIVVF~~P~~~~~~yIKRVIGlPGD~  155 (324)
T PRK10861         80 FIYEP-FQIPSGSMMPTLLIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKYPEDPKLDYIKRVVGLPGDK  155 (324)
T ss_pred             hEEEE-EEECCCcCcCcccCCCEEEEEEeecCccCccccccccccCCCCCCCEEEEecCCCCCCcEEEEeeecCCcE
Confidence            33466 9999999999999999999998 1              15689999999998754 357999999999875

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.69  E-value=1e-16  Score=112.55  Aligned_cols=79  Identities=33%  Similarity=0.529  Sum_probs=64.2

Q ss_pred             eEEEcCCCccccCcCCCEEEEEecCC---CCCcCcEEEEEeCCC-CcCEEEEEEEecccccCCeeEEEEeccCCC-Ccch
Q 030254           50 VVVVLSESMEPGFQRGDILFLQMSKD---PIRTGEIVVFNIQGR-DIPIVHRVIEVHEQRQSGEVRILTKGDNND-VDDR  124 (180)
Q Consensus        50 ~~~V~~~SM~P~l~~GD~v~v~~~~~---~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~-~~D~  124 (180)
                      .+.|.|+||+|++++||++++.+...   +++.||+|+|+.++. +.+++||+++           |+++|||++ +.|+
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~-----------~~~~gDn~~ns~d~   70 (85)
T cd06530           2 PVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG-----------YFVLGDNRNNSLDS   70 (85)
T ss_pred             eeEEcCCCCcCcccCCCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE-----------EEEeeCCCCCCCcc
Confidence            37899999999999999999997333   799999999999874 4589999998           789999933 2444


Q ss_pred             hhhccCCceeccceEeeEE
Q 030254          125 MLYAQGQFWLKQEHIMGRA  143 (180)
Q Consensus       125 ~~y~~~~~~V~~~~IiG~v  143 (180)
                      +.+    ++++.++|+|++
T Consensus        71 ~~~----g~~~~~~i~G~~   85 (85)
T cd06530          71 RYW----GPVPEDDIVGKV   85 (85)
T ss_pred             CCc----CCCcHHHeEEeC
Confidence            432    468899999974

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.68  E-value=2.7e-16  Score=111.85  Aligned_cols=83  Identities=20%  Similarity=0.242  Sum_probs=68.4

Q ss_pred             EEcCCCccccCcCCCEEEEEe---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEecccccCCeeEEEEeccCCCC-cchhh
Q 030254           52 VVLSESMEPGFQRGDILFLQM---SKDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQRQSGEVRILTKGDNNDV-DDRML  126 (180)
Q Consensus        52 ~V~~~SM~P~l~~GD~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~-~D~~~  126 (180)
                      .|.|+||+|+|++||+|++++   ....+++||+++|+.+++ +..++||+++++++      .++++|||+.. .|++.
T Consensus         2 ~V~g~SM~P~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~~------~~~l~~dN~~~~~d~~~   75 (90)
T TIGR02754         2 KVTGVSMSPTLPPGDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDDN------GLFLLGDNPKASTDSRQ   75 (90)
T ss_pred             EeeCCCccCccCCCCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcCC------eEEEeCCCCCCCCcccc
Confidence            588999999999999999996   234456899999998753 36899999999865      68999999764 67765


Q ss_pred             hccCCceeccceEeeEEE
Q 030254          127 YAQGQFWLKQEHIMGRAV  144 (180)
Q Consensus       127 y~~~~~~V~~~~IiG~v~  144 (180)
                      +    ++++..+|+|+++
T Consensus        76 ~----g~v~~~~I~G~v~   89 (90)
T TIGR02754        76 L----GPVPRSLLLGKVL   89 (90)
T ss_pred             c----CCCcHHHEEEEEE
Confidence            4    5789999999985

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.6e-16  Score=124.44  Aligned_cols=96  Identities=26%  Similarity=0.328  Sum_probs=78.0

Q ss_pred             EEEcCCCccccCcCC-CEEEEEe---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc----------c---------
Q 030254           51 VVVLSESMEPGFQRG-DILFLQM---SKDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR----------Q---------  106 (180)
Q Consensus        51 ~~V~~~SM~P~l~~G-D~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~----------~---------  106 (180)
                      ..+.|.||+||++++ |++++++   ..+.+++||||+++.|.+ .+.++|||++++||-          +         
T Consensus        36 ~~~~gpSM~PTl~~~gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~cKRIva~eGD~v~v~~~~~~~n~~~e~~~~~  115 (176)
T KOG0171|consen   36 VMCSGPSMEPTLHDGGDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHICKRIVAMEGDLVEVHDGPLVVNDLVEKFSTP  115 (176)
T ss_pred             eeccCCCcCceecCCCcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhhhheeeccCCceEEEecCCcccchhhhhccce
Confidence            778999999988777 5555466   467789999999998844 367999999999992          1         


Q ss_pred             --CCeeEEEEeccCCC-CcchhhhccCCceeccceEeeEEEE-EEcCc
Q 030254          107 --SGEVRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAVG-FLPYV  150 (180)
Q Consensus       107 --~g~~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~~-~iP~~  150 (180)
                        -|+++.|+.|||.+ +.||+.|    |+++...|.||+++ .||..
T Consensus       116 i~VP~GhVfv~GDN~~nS~DSr~y----GplP~glI~gRvv~r~Wp~s  159 (176)
T KOG0171|consen  116 IRVPEGHVFVEGDNRNNSLDSRNY----GPLPMGLIQGRVVFRIWPPS  159 (176)
T ss_pred             eeccCceEEEecCCCCCccccccc----CCCchhheeeeEEEEecCch
Confidence              26789999999954 6899987    57999999999996 57753

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.5e-14  Score=110.55  Aligned_cols=97  Identities=25%  Similarity=0.336  Sum_probs=81.4

Q ss_pred             EEEcCCCccccCcCC------CEEEEEe---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc-----------cCCe
Q 030254           51 VVVLSESMEPGFQRG------DILFLQM---SKDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR-----------QSGE  109 (180)
Q Consensus        51 ~~V~~~SM~P~l~~G------D~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~-----------~~g~  109 (180)
                      ..|.|.||+|+++++      |.|++.+   ...++.+||||+|++|.+ +++++|||.+++++.           .-++
T Consensus        34 a~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpk  113 (174)
T KOG1568|consen   34 AQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPK  113 (174)
T ss_pred             eEEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCChhheeeeeeecccccEeccCCCCCCceecCC
Confidence            679999999999887      8999988   335699999999998854 578999999999985           1378


Q ss_pred             eEEEEeccCCC-CcchhhhccCCceeccceEeeEEEE-EEcCcc
Q 030254          110 VRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAVG-FLPYVG  151 (180)
Q Consensus       110 ~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~~-~iP~~G  151 (180)
                      +++|+.|||.. +.||+.|    |||+-..|.||++. .||...
T Consensus       114 ghcWVegDn~~hs~DSntF----GPVS~gli~grai~ilwpP~R  153 (174)
T KOG1568|consen  114 GHCWVEGDNQKHSYDSNTF----GPVSTGLIVGRAIYILWPPVR  153 (174)
T ss_pred             CcEEEecCCcccccccCcc----CCcchhheeeeEEEEEcChHH
Confidence            89999999975 5798865    68999999999995 688554

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.37  E-value=2.3e-12  Score=86.89  Aligned_cols=60  Identities=32%  Similarity=0.501  Sum_probs=48.7

Q ss_pred             EEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccC
Q 030254           52 VVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDN  118 (180)
Q Consensus        52 ~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDn  118 (180)
                      .|.|+||+|+|++||+|++++ ..+++.||+|+|+.++.+..++||+.+.+++      .+.+..||
T Consensus         1 ~V~GdSM~P~i~~Gd~v~v~~-~~~~~~gdivv~~~~~~~~~~iKrv~~~~~~------~~~~~~~n   60 (70)
T PF00717_consen    1 RVEGDSMEPTIKDGDIVLVDP-SSEPKDGDIVVVKIDGDEELYIKRVVGEPGG------IILISSNN   60 (70)
T ss_dssp             EEESSTTGGTSSTTEEEEEEE-TS---TTSEEEEEETTEESEEEEEEEEETTE------EEEE-SST
T ss_pred             CeECcCcccCeeCCCEEEEEE-cCCCccCeEEEEEECCceeeEEEEEEEeCCC------EEEEeccC
Confidence            488999999999999999998 5699999999999987744799999998876      67777666

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.34  E-value=1.1e-11  Score=85.54  Aligned_cols=64  Identities=33%  Similarity=0.513  Sum_probs=54.4

Q ss_pred             EEEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCC
Q 030254           51 VVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNND  120 (180)
Q Consensus        51 ~~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~  120 (180)
                      +.|.|+||+|++.+||++++++....++.||+++++.++ +..++||+...++.     +.+.+++||..
T Consensus         3 ~~v~g~SM~P~i~~gd~v~i~~~~~~~~~G~iv~~~~~~-~~~~ikrl~~~~~~-----~~~~l~~~N~~   66 (84)
T cd06462           3 LRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPG-GELTVKRVIGLPGE-----GHYFLLGDNPN   66 (84)
T ss_pred             eEEcCCCccCcccCCCEEEEEecCCCCcCCEEEEEEcCC-CcEEEEEEEEECCC-----CEEEEECCCCC
Confidence            789999999999999999999843459999999999987 35799999998752     27999999943

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.21  E-value=2.7e-10  Score=91.11  Aligned_cols=68  Identities=15%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             CCCCCcCcEEEEEeCCCC--------------------cCEEEEEEEecccc---------c------------------
Q 030254           74 KDPIRTGEIVVFNIQGRD--------------------IPIVHRVIEVHEQR---------Q------------------  106 (180)
Q Consensus        74 ~~~~~~GDIVvf~~~~~~--------------------~~~ihRVi~~~~d~---------~------------------  106 (180)
                      ..++++||+|+|+.|...                    .+++|||++++||+         +                  
T Consensus        48 ~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i~~~v~iNg~~~~~~~~~~~~~~g~~  127 (176)
T PRK13838         48 DRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEIGGSVSIDGRPLPSSSVRRRDGEGRP  127 (176)
T ss_pred             CCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEECCEEEECCEEccccccccccccCCc
Confidence            578999999999865331                    36999999999985         0                  


Q ss_pred             --------CCeeEEEEeccCCCCcchhhhccCCceeccceEeeEEEE
Q 030254          107 --------SGEVRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRAVG  145 (180)
Q Consensus       107 --------~g~~~~~t~GDnn~~~D~~~y~~~~~~V~~~~IiG~v~~  145 (180)
                              -++++|+++|||+.+.|||.|    |+|++++|+|++.-
T Consensus       128 l~~~~~~~vp~g~~fvlgd~~~S~DSRy~----G~V~~~~I~G~a~p  170 (176)
T PRK13838        128 LTPFPGGVVPPGHLFLHSSFAGSYDSRYF----GPVPASGLLGLARP  170 (176)
T ss_pred             CCCCCccCcCCCeEEEECCCCCCCccccc----CcccHHHeEEEEEE
Confidence                    046689999999888999975    68999999999863

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=99.11  E-value=9.1e-10  Score=75.78  Aligned_cols=63  Identities=30%  Similarity=0.429  Sum_probs=54.1

Q ss_pred             EEEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCc
Q 030254           51 VVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVD  122 (180)
Q Consensus        51 ~~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~  122 (180)
                      +.+.|+||+|.+++||.+++++ ...++.||++++..++  ..++||+...+++      .+.++.||....
T Consensus         3 ~~v~g~sM~p~i~~gd~lii~~-~~~~~~g~i~~~~~~~--~~~ikr~~~~~~~------~~~L~s~N~~~~   65 (81)
T cd06529           3 LRVKGDSMEPTIPDGDLVLVDP-SDTPRDGDIVVARLDG--ELTVKRLQRRGGG------RLRLISDNPAYP   65 (81)
T ss_pred             EEEECCCcCCccCCCCEEEEcC-CCCCCCCCEEEEEECC--EEEEEEEEECCCC------cEEEEeCCCCCC
Confidence            7899999999999999999998 4559999999999986  4699999987644      688999997433

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=99.03  E-value=3.6e-09  Score=84.27  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             EEEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCc--------------------CEEEEEEEecccc----c
Q 030254           51 VVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDI--------------------PIVHRVIEVHEQR----Q  106 (180)
Q Consensus        51 ~~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~--------------------~~ihRVi~~~~d~----~  106 (180)
                      ..-.|.||-+.+..     .. ...++++||+|+|+.|.+..                    .++|||++++||+    +
T Consensus        27 ~~N~T~S~P~g~Y~-----~~-~~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpGD~V~i~~  100 (171)
T TIGR02771        27 RINTTKSLPLGLYW-----TT-SSKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPGDRVTVRA  100 (171)
T ss_pred             EEECCCCCcceEEE-----eC-CCCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCCCEEEEEC
Confidence            45667788766532     22 35789999999999775321                    7999999999985    0


Q ss_pred             -----C---------------------------CeeEEEEeccCCC-CcchhhhccCCceeccceEeeEEEE
Q 030254          107 -----S---------------------------GEVRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAVG  145 (180)
Q Consensus       107 -----~---------------------------g~~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~~  145 (180)
                           |                           +++ |+++|||++ +.|||.|    |+|+.++|+||+.-
T Consensus       101 ~~v~INg~~~~~~~~~~~~~~g~~l~~~~~~~vp~g-yf~lgdn~~~S~DSRy~----G~V~~~~IiGk~~p  167 (171)
T TIGR02771       101 DVVAINGQLLPYSKPLATDSSGRPLPPFPEGVIPPG-FFVVHDTSPTSFDSRYF----GPISREQVIGRVKP  167 (171)
T ss_pred             CEEEECCEEcccccccccccCCCccccCCCcEECCC-EEEECCCCCCCCccccc----ceecHHHeEEEEEE
Confidence                 1                           344 889999976 5799875    68999999999873

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.97  E-value=5.1e-09  Score=85.51  Aligned_cols=85  Identities=22%  Similarity=0.279  Sum_probs=64.1

Q ss_pred             eEEEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhcc
Q 030254           50 VVVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQ  129 (180)
Q Consensus        50 ~~~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~~  129 (180)
                      ++.|.|+||+|++++||.++|++ ..+...||.+++...++ ..++||+...++.      .+.+..+|...++...+. 
T Consensus       125 ~i~V~GDSMeP~~~~Gd~ilVd~-~~~~~~gd~v~v~~~g~-~~~VK~l~~~~~~------~~~l~S~N~~~~~~~~~~-  195 (214)
T COG2932         125 ALRVTGDSMEPTYEDGDTLLVDP-GVNTRRGDRVYVETDGG-ELYVKKLQREPGG------LLRLVSLNPDYYPDEIFS-  195 (214)
T ss_pred             EEEEeCCcccccccCCCEEEECC-CCceeeCCEEEEEEeCC-eEEEEEEEEecCC------eEEEEeCCCCCCcccccC-
Confidence            47899999999999999999998 67788899777776664 4799999999865      566889887653333221 


Q ss_pred             CCceecc-ceEeeEEEEEE
Q 030254          130 GQFWLKQ-EHIMGRAVGFL  147 (180)
Q Consensus       130 ~~~~V~~-~~IiG~v~~~i  147 (180)
                          -.. -+++|||+...
T Consensus       196 ----~~~~v~iIgrVv~~~  210 (214)
T COG2932         196 ----EDDDVEIIGRVVWVS  210 (214)
T ss_pred             ----ccceEEEEEEEEEEe
Confidence                111 46899998643

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=98.93  E-value=4.1e-09  Score=81.66  Aligned_cols=56  Identities=27%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             CeEEEcCCCccccCcCCCEEEEEe---cCCCCCcCcEEEEEeCCCCcCEEEEEEEecccc
Q 030254           49 PVVVVLSESMEPGFQRGDILFLQM---SKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQR  105 (180)
Q Consensus        49 p~~~V~~~SM~P~l~~GD~v~v~~---~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~  105 (180)
                      +.+.|+|+||+||++.||++++++   ....++.+|++.+.... ...+++|+++.+||.
T Consensus        32 ~~~~V~s~SM~Ptl~~GD~v~v~k~~~~~~~~~~~~~~~~~~~~-~~~~~kr~~~~~GD~   90 (166)
T COG0681          32 EPVVVPSGSMEPTLNVGDRVLVKKFSYGFGKLKVPDIIVLPAVV-EGDLIKRVIGLRGDI   90 (166)
T ss_pred             EEEEECCCccccccccCCEEEEEeccccccCCccceeeecCCCC-CcceEEEeccCCCCE
Confidence            349999999999999999999998   22346666666332222 235777777777773

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=98.82  E-value=8.3e-08  Score=76.90  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             CCCCcCcEEEEEeCCC--------------------CcCEEEEEEEecccc----c-----C------------------
Q 030254           75 DPIRTGEIVVFNIQGR--------------------DIPIVHRVIEVHEQR----Q-----S------------------  107 (180)
Q Consensus        75 ~~~~~GDIVvf~~~~~--------------------~~~~ihRVi~~~~d~----~-----~------------------  107 (180)
                      .++++||+|+|..|..                    ..+++|||++++||+    +     |                  
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~~l~VNG~~v~~~~~~~~d~~g~~  128 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDDGVRVNGELLPLSKPILADGAGRP  128 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECCEEEECCEEccccccccccccCCc
Confidence            4567777777765431                    137999999999985    0     0                  


Q ss_pred             -----------CeeEEEEeccCCC-CcchhhhccCCceeccceEeeEEE
Q 030254          108 -----------GEVRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAV  144 (180)
Q Consensus       108 -----------g~~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~  144 (180)
                                 ++++|+++|||++ +.|||+|    |+|++++|+|++.
T Consensus       129 l~~~~~~~~~lp~g~~fvlgd~~~~S~DSRYf----G~V~~~~I~G~~~  173 (178)
T PRK13884        129 LPRYQANSYTLGESELLLMSDVSATSFDGRYF----GPINRSQIKTVIR  173 (178)
T ss_pred             ccccCCCceEECCCEEEEECCCCCCCCccccc----CcccHHHEEEEEE
Confidence                       3568999999865 6899875    6899999999986

>PRK00215 LexA repressor; Validated

Probab=98.75  E-value=1.2e-07  Score=76.66  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=62.2

Q ss_pred             eEEEcCCCcc-ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESME-PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~-P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |++++||++++++ ..+++.||+++++.++  ...+||+... ++      .+.+..||...+ +....
T Consensus       120 ~~~V~GdSM~~~~i~~Gd~v~v~~-~~~~~~G~ivv~~~~~--~~~vKrl~~~-~~------~~~L~s~Np~y~-~~~~~  188 (205)
T PRK00215        120 LLRVRGDSMIDAGILDGDLVIVRK-QQTARNGQIVVALIDD--EATVKRFRRE-GG------HIRLEPENPAYE-PIIVD  188 (205)
T ss_pred             EEEEccCCCCCCCcCCCCEEEEeC-CCCCCCCCEEEEEECC--EEEEEEEEEe-CC------EEEEEcCCCCCC-CEEeC
Confidence            4789999995 7999999999997 5678999999999876  4799999864 22      578999875433 22111


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                           -..-.|+|+|+..+.
T Consensus       189 -----~~~~~IiG~Vv~~~r  203 (205)
T PRK00215        189 -----PDRVTIEGKVVGLIR  203 (205)
T ss_pred             -----CCcEEEEEEEEEEEE
Confidence                 013689999987653

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.69  E-value=2.6e-07  Score=70.89  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=59.4

Q ss_pred             eEEEcCCCcc-ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESME-PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~-P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |++++||++++++ ..+++.||++++..+++  ..+||... . +      .+.++.+|...++ ..+.
T Consensus        53 ~l~V~GdSM~~~~I~~GD~liVd~-~~~~~~Gdivv~~~~g~--~~vKrl~~-~-~------~~~L~s~N~~y~~-i~i~  120 (139)
T PRK10276         53 FVKASGDSMIDAGISDGDLLIVDS-AITASHGDIVIAAVDGE--FTVKKLQL-R-P------TVQLIPMNSAYSP-ITIS  120 (139)
T ss_pred             EEEEecCCCCCCCCCCCCEEEEEC-CCCCCCCCEEEEEECCE--EEEEEEEE-C-C------cEEEEcCCCCCCC-EEcC
Confidence            4789999998 6899999999997 45689999999987653  68999875 2 2      3678888754322 1110


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                          .-+.-+|+|+|++.+.
T Consensus       121 ----~~~~~~IiG~V~~~~~  136 (139)
T PRK10276        121 ----SEDTLDVFGVVTHIVK  136 (139)
T ss_pred             ----CCCcEEEEEEEEEEEE
Confidence                0122479999987653

>PRK12423 LexA repressor; Provisional

Probab=98.64  E-value=3.2e-07  Score=74.53  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             eEEEcCCCcc-ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESME-PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~-P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |+|++||++++++ ..+++.||++++..++  ...+||..... +      .+.++.+|... ++..+.
T Consensus       116 ~l~V~GdSM~~~~i~~Gd~viv~~-~~~~~~Gdivv~~~~~--~~~vKrl~~~~-~------~~~L~s~N~~y-~~i~~~  184 (202)
T PRK12423        116 LLQVQGDSMIDDGILDGDLVGVHR-SPEARDGQIVVARLDG--EVTIKRLERSG-D------RIRLLPRNPAY-APIVVA  184 (202)
T ss_pred             EEEEecCcCCCCCcCCCCEEEEeC-CCcCCCCCEEEEEECC--EEEEEEEEEeC-C------EEEEEcCCCCC-CCEEcC
Confidence            4789999997 7999999999997 5788999999998864  46899987642 2      57888987543 332211


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                          +-+.-.|+|++++.+.
T Consensus       185 ----~~~~~~I~Gvv~g~~r  200 (202)
T PRK12423        185 ----PDQDFAIEGVFCGLIR  200 (202)
T ss_pred             ----CCCcEEEEEEEEEEEE
Confidence                1124589999998764

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.59  E-value=7e-07  Score=71.91  Aligned_cols=83  Identities=28%  Similarity=0.448  Sum_probs=62.0

Q ss_pred             eEEEcCCCcc-ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESME-PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~-P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||. |.+++||++++++ ..+++.||++++..++  ...+||...- ++      .+++..||...++- .. 
T Consensus       113 ~~~V~GdSM~~~~i~~Gd~v~v~~-~~~~~~G~ivvv~~~~--~~~vKrl~~~-~~------~i~L~s~N~~y~~i-~~-  180 (199)
T TIGR00498       113 LLKVMGDSMVDAGICDGDLLIVRS-QKDARNGEIVAAMIDG--EVTVKRFYKD-GT------KVELKPENPEFDPI-VL-  180 (199)
T ss_pred             EEEecCCCCCCCCCCCCCEEEEec-CCCCCCCCEEEEEECC--EEEEEEEEEE-CC------EEEEEcCCCCCcCC-cC-
Confidence            4789999996 6899999999997 5789999999999843  4799998754 32      57888987543332 11 


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                          .-..-.|+|+|+..+.
T Consensus       181 ----~~~~~~IiG~Vv~~~r  196 (199)
T TIGR00498       181 ----NAEDVTILGKVVGVIR  196 (199)
T ss_pred             ----CCCcEEEEEEEEEEEE
Confidence                1124689999987653

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.57  E-value=5.2e-08  Score=74.97  Aligned_cols=67  Identities=25%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             CCcCcEEEEEeCC-------------CCcCEEEEEEEecccc----c-------------------------------CC
Q 030254           77 IRTGEIVVFNIQG-------------RDIPIVHRVIEVHEQR----Q-------------------------------SG  108 (180)
Q Consensus        77 ~~~GDIVvf~~~~-------------~~~~~ihRVi~~~~d~----~-------------------------------~g  108 (180)
                      +++||+|+|..|.             ++.+++|||++++||+    +                               -+
T Consensus        22 ~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~g~~l~~~~~~~~vp  101 (138)
T PF10502_consen   22 IERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSDGRPLPQFSGSGTVP  101 (138)
T ss_dssp             -------------------------------------------------------------------S-T----TEEE--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceEeC
Confidence            5666666666543             1247999999999995    0                               05


Q ss_pred             eeEEEEeccCCC-CcchhhhccCCceeccceEeeEEEEEE
Q 030254          109 EVRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       109 ~~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~~~i  147 (180)
                      +++|+++|||++ +.|||.|    |+|+.++|+|++.-.|
T Consensus       102 ~g~~~v~gd~~~~S~DSRy~----G~V~~~~I~g~~~pl~  137 (138)
T PF10502_consen  102 EGEYFVLGDNRPNSFDSRYF----GPVPRSQIIGKARPLW  137 (138)
T ss_dssp             TTEEEEE-SBTTS--SHHHH------EEGGGEEEEEEEEE
T ss_pred             CCEEEEecCCCCCccccCEe----cccCHHHEEEEEEEEE
Confidence            678999998866 4799986    5899999999997543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=98.09  E-value=4.5e-05  Score=62.34  Aligned_cols=81  Identities=27%  Similarity=0.436  Sum_probs=62.5

Q ss_pred             eEEEcCCCcc-ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESME-PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~-P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      ++.|.|+||. +.+.+||.|+|++ ..+++.||||+...++ +...+||...-.+       .+.++--|.. ..+..  
T Consensus       114 ~L~V~GdSM~~~gi~dGDlvvV~~-~~~a~~GdiVvA~i~g-~e~TvKrl~~~g~-------~i~L~p~Np~-~~~i~--  181 (201)
T COG1974         114 FLRVSGDSMIDAGILDGDLVVVDP-TEDAENGDIVVALIDG-EEATVKRLYRDGN-------QILLKPENPA-YPPIP--  181 (201)
T ss_pred             EEEecCCccccCcCCCCCEEEEcC-CCCCCCCCEEEEEcCC-CcEEEEEEEEeCC-------EEEEEeCCCC-CCCcc--
Confidence            4789999998 7889999999997 8899999999999998 4589999887432       4666665543 33322  


Q ss_pred             cCCceec--cceEeeEEEEEE
Q 030254          129 QGQFWLK--QEHIMGRAVGFL  147 (180)
Q Consensus       129 ~~~~~V~--~~~IiG~v~~~i  147 (180)
                           ++  .-.|+|++++.+
T Consensus       182 -----~~~~~~~I~G~vvgv~  197 (201)
T COG1974         182 -----VDADSVTILGKVVGVI  197 (201)
T ss_pred             -----cCccceEEEEEEEEEE
Confidence                 33  468999999865

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.49  E-value=0.0081  Score=47.27  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=27.1

Q ss_pred             eeEEEEeccCCC-CcchhhhccCCceeccceEeeEEEEEE
Q 030254          109 EVRILTKGDNND-VDDRMLYAQGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       109 ~~~~~t~GDnn~-~~D~~~y~~~~~~V~~~~IiG~v~~~i  147 (180)
                      +..+++++|.++ +.|+|+|    |+++.++|+|.+.=.|
T Consensus       134 ~~el~lL~~~~~~SfDsRYf----Gpipas~vig~aRPvw  169 (173)
T COG4959         134 PSELLLLTDRSSTSFDSRYF----GPIPASQVIGVARPVW  169 (173)
T ss_pred             CCeEEEEeccCCccccccee----cccCHHHcceeeeeee
Confidence            456888898765 5799975    6899999999876443

>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.77  E-value=3.5  Score=35.55  Aligned_cols=38  Identities=32%  Similarity=0.632  Sum_probs=32.5

Q ss_pred             CCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccC
Q 030254           77 IRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDN  118 (180)
Q Consensus        77 ~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDn  118 (180)
                      ++.||||+=++.+.+  ++-||+.+..+  +|+..+.++|-+
T Consensus         1 mkiGDIV~RKSYg~D--I~FrIidI~~~--~g~~~aiLkG~d   38 (287)
T PF05582_consen    1 MKIGDIVARKSYGKD--ILFRIIDIKEE--NGKKIAILKGLD   38 (287)
T ss_pred             CCCCCEEEeeecCCc--eEEEEEEEEcC--CCceEEEEeCCc
Confidence            478999999998886  99999999875  577788899977

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=80.12  E-value=1.9  Score=29.87  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=22.6

Q ss_pred             cCCCccc---cCcCCCEEEEEecCCCCCcCcEEE
Q 030254           54 LSESMEP---GFQRGDILFLQMSKDPIRTGEIVV   84 (180)
Q Consensus        54 ~~~SM~P---~l~~GD~v~v~~~~~~~~~GDIVv   84 (180)
                      .+|.|+=   -+.+||+|++.....+++.|||+-
T Consensus        36 I~GKmr~~~i~I~~GD~V~Ve~~~~d~~kg~I~~   69 (75)
T COG0361          36 ISGKMRKNRIRILPGDVVLVELSPYDLTKGRIVY   69 (75)
T ss_pred             ccCcchheeEEeCCCCEEEEEecccccccccEEE
Confidence            3456655   678889888888667788888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	99.77
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.28
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.26
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	99.19
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	99.13
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.86
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.84
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	97.25

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=99.77  E-value=1.6e-18  Score=143.36  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=49.2

Q ss_pred             cCeEEEcCCCccccCcCCCEEEEEec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc
Q 030254           48 SPVVVVLSESMEPGFQRGDILFLQMS---------------KDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR  105 (180)
Q Consensus        48 ~p~~~V~~~SM~P~l~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~  105 (180)
                      ++ +.|.|+||+|||++||.|++++.               ..++++||||+|+.|.+ +..++|||++++||+
T Consensus         7 ~~-~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~   79 (248)
T 1b12_A            7 EP-FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK   79 (248)
T ss_dssp             EE-EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred             EE-EEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence            55 89999999999999999999982               26899999999998753 357999999998874

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.28  E-value=3.2e-11  Score=87.84  Aligned_cols=82  Identities=13%  Similarity=0.241  Sum_probs=64.1

Q ss_pred             eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254           50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD  123 (180)
Q Consensus        50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|++||++++++ ..+++.||+++++.+++ ..++||++... +      .+++++||....+
T Consensus        15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~-~~~~~~Gdivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~   85 (109)
T 1kca_A           15 WLEVEGNSMTAPTGSKPSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFKKLIRDS-G------QVFLQPLNPQYPM   85 (109)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEET-TSCCCTTCEEEEECSTT-CEEEEEEEEET-T------EEEEECSSTTSCC
T ss_pred             EEEEeCcCcCCCCCCCCeeCCCCEEEEec-CCcCCCCCEEEEEECCC-eEEEEEEEEeC-C------EEEEEECCCCCCC
Confidence            4789999999      9999999999998 45799999999998763 57999999743 2      5789999865333


Q ss_pred             hhhhccCCceeccceEeeEEEEEE
Q 030254          124 RMLYAQGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       124 ~~~y~~~~~~V~~~~IiG~v~~~i  147 (180)
                      .. .      -...+|+|+|+..+
T Consensus        86 ~~-~------~~~~~IiG~Vv~~~  102 (109)
T 1kca_A           86 IP-C------NESCSVVGKVIASQ  102 (109)
T ss_dssp             EE-C------CTTCEEEEEEEEEE
T ss_pred             EE-c------CCCcEEEEEEEEEE
Confidence            11 1      13578999998653

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.26  E-value=3e-11  Score=88.41  Aligned_cols=83  Identities=17%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             eEEEcCCCccc-cCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESMEP-GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~P-~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+| +|++||++++++ ..+++.|||++++.++  ..++||+...+        .+++++||...++. ...
T Consensus        29 ~~~v~GdSM~p~~i~~Gd~v~vd~-~~~~~~gdivv~~~~~--~~~vKr~~~~~--------~~~L~s~N~~y~~~-~i~   96 (116)
T 1umu_A           29 FVKASGDSMIDGGISDGDLLIVDS-AITASHGDIVIAAVDG--EFTVKKLQLRP--------TVQLIPMNSAYSPI-TIS   96 (116)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEET-TSCCCTTCEEEEEETT--EEEEEEEECSS--------SCEEECSSTTSCCE-ECC
T ss_pred             EEEECCCCcCCCCCCCCCEEEEEc-CCCCCCCCEEEEEECC--EEEEEEEEeCC--------cEEEECCCCCCCCE-EcC
Confidence            47899999999 899999999998 4569999999999875  47999998743        37789998653332 111


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                      .    -..-+|+|+|+..+.
T Consensus        97 ~----~~~~~IiG~Vv~~~r  112 (116)
T 1umu_A           97 S----EDTLDVFGVVIHVVK  112 (116)
T ss_dssp             T----TSCEEEEEEEEEEEC
T ss_pred             C----CCeEEEEEEEEEEEE
Confidence            0    123579999987664

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=99.19  E-value=1.2e-10  Score=87.33  Aligned_cols=81  Identities=12%  Similarity=0.214  Sum_probs=63.4

Q ss_pred             eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254           50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD  123 (180)
Q Consensus        50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|++||+|++++ ..+++.||+++++.+++ ..++||+.... +      .++++.||....+
T Consensus        46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~-~~~~~~Gdivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~  116 (133)
T 2hnf_A           46 WLEVEGNSMTTPTGSKTSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFAKLIRDS-G------QVFLQPLNPQYPM  116 (133)
T ss_dssp             EEECCSSTTCCC---CCCCCTTCEEEEET-TSCCCTTSEEEEEETTT-EEEEEEEEEET-T------EEEEECSSTTSCC
T ss_pred             EEEEeCCCcCCCcCCCCccCCCCEEEEcc-CCCCCCCCEEEEEECCC-EEEEEEEEEeC-C------eEEEEECCCCCCC
Confidence            4789999999      9999999999998 56799999999998763 57999998742 2      5789999865333


Q ss_pred             hhhhccCCceeccceEeeEEEEE
Q 030254          124 RMLYAQGQFWLKQEHIMGRAVGF  146 (180)
Q Consensus       124 ~~~y~~~~~~V~~~~IiG~v~~~  146 (180)
                      .. .      -..-+|+|+|+..
T Consensus       117 ~~-~------~~~~~IiG~Vv~~  132 (133)
T 2hnf_A          117 IP-C------NESCSVVGKVIAS  132 (133)
T ss_dssp             EE-C------STTEEEEEEEEEE
T ss_pred             EE-c------CCCCEEEEEEEEE
Confidence            21 1      1456899999864

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=99.13  E-value=3.4e-10  Score=89.70  Aligned_cols=88  Identities=22%  Similarity=0.292  Sum_probs=64.0

Q ss_pred             eEEEcCCCcccc-CcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESMEPG-FQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~P~-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+|+ |++||+|++++ ..+++.|||+++..++  ...+||+.. +++      .+.+..||...++ ....
T Consensus       112 ~~~v~GdSM~p~~i~~Gd~v~vd~-~~~~~~G~i~v~~~~~--~~~vKrl~~-~~~------~~~l~s~N~~y~~-~~~~  180 (202)
T 1jhf_A          112 LLRVSGMSMKDIGIMDGDLLAVHK-TQDVRNGQVVVARIDD--EVTVKRLKK-QGN------KVELLPENSEFKP-IVVD  180 (202)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEE-CSCCCTTSEEEEEETT--EEEEEEEEE-ETT------EEEEECSSTTCCC-EEEE
T ss_pred             EEEECCCCCCCCCCCCCCEEEEec-cCCcCCCeEEEEEECC--EEEEEEEEE-eCC------EEEEEECCCCCCC-EEcc
Confidence            467899999999 99999999998 4679999999999864  479999994 443      6889999854332 2111


Q ss_pred             cCCceeccceEeeEEEEEEcCcc
Q 030254          129 QGQFWLKQEHIMGRAVGFLPYVG  151 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP~~G  151 (180)
                      ..   ...-+|+|+|+..+...+
T Consensus       181 ~~---~~~~~IiG~Vv~~~r~~~  200 (202)
T 1jhf_A          181 LR---QQSFTIEGLAVGVIRNGD  200 (202)
T ss_dssp             TT---TSCEEEEEEEEEEEEC--
T ss_pred             CC---CCceEEEEEEEEEEEccc
Confidence            00   123579999998765443

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.86  E-value=2.2e-08  Score=79.26  Aligned_cols=83  Identities=22%  Similarity=0.411  Sum_probs=63.3

Q ss_pred             eEEEcCCCc-cccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESM-EPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM-~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+|| +|++.+||++++++ ..+++.|||+++..++  ...+||+.... +      .+++..||...++ ..+ 
T Consensus       111 ~l~v~GdSM~~p~i~~GD~viv~~-~~~~~~G~ivv~~~~~--~~~vKr~~~~~-~------~~~L~~~N~~y~~-i~i-  178 (196)
T 3k2z_A          111 LLKVKGESMIEEHICDGDLVLVRR-QDWAQNGDIVAAMVDG--EVTLAKFYQRG-D------TVELRPANREMSS-MFF-  178 (196)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEE-CSCCCTTCEEEEEETT--EEEEEEEEEET-T------EEEEECSCTTSCC-EEE-
T ss_pred             EEEEeCCCcCCCCCCCCCEEEEec-cCcCCCCCEEEEEECC--cEEEEEEEEEC-C------EEEEEECCCCCCC-EEe-
Confidence            478999999 69999999999998 5678999999999875  47999997642 2      6889999864332 211 


Q ss_pred             cCCceeccceEeeEEEEEEc
Q 030254          129 QGQFWLKQEHIMGRAVGFLP  148 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~iP  148 (180)
                          +-..-.|+|+|++.+.
T Consensus       179 ----~~~~~~i~G~Vv~~~r  194 (196)
T 3k2z_A          179 ----RAEKVKILGKVVGVFR  194 (196)
T ss_dssp             ----EGGGCEEEEEEEEEEE
T ss_pred             ----cCCCEEEEEEEEEEEE
Confidence                1134589999987653

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.84  E-value=8.4e-09  Score=82.95  Aligned_cols=82  Identities=13%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254           50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD  123 (180)
Q Consensus        50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D  123 (180)
                      .+.|.|+||+      |+|++||+|++++ ..+++.||++++..+++ ...+||+...+ +      .+++..||....+
T Consensus       142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~-~~~~~~g~ivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~  212 (236)
T 3bdn_A          142 WLEVEGNSMTAPTGSKPSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFKKLIRGS-G------QVFLQPLNPQYPM  212 (236)
T ss_dssp             EEECCSSSSCCCSSCSSCCCSSCEEEECC-SSCCCTTSEEEEESTTT-CCCCEEEECCS-S------SCEEECSSTTSCC
T ss_pred             EEEEeCCCcCCCCCCCCcCCCCCEEEECC-CCCCCCCcEEEEEECCC-eEEEEEEEEcC-C------cEEEEeCCCCCCC
Confidence            3689999999      9999999999998 45799999999988543 47999998733 2      4668899854332


Q ss_pred             hhhhccCCceeccceEeeEEEEEE
Q 030254          124 RMLYAQGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       124 ~~~y~~~~~~V~~~~IiG~v~~~i  147 (180)
                       ...     . ..-.|+|+|+..+
T Consensus       213 -~~~-----~-~~~~IiG~Vv~~~  229 (236)
T 3bdn_A          213 -IPC-----N-ESCSVVGKVIASQ  229 (236)
T ss_dssp             -BC--------CCCEEEEEEEECC
T ss_pred             -eec-----C-CCcEEEEEEEEEE
Confidence             211     1 4468999998754

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=97.25  E-value=0.001  Score=51.18  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             CCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhccCCcee
Q 030254           55 SESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWL  134 (180)
Q Consensus        55 ~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~~~~~~V  134 (180)
                      +++|.+.-++||+|++++.  ++..|+|+++..++  ...+||+...+++      .+.+..||.    +...     ..
T Consensus       112 ~~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~------~i~L~s~N~----~~~i-----~~  172 (189)
T 2fjr_A          112 LTDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR------KLHVAGGKV----PFEC-----GI  172 (189)
T ss_dssp             CSSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT------EEEEESSSS----CEEE-----ET
T ss_pred             CCCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC------EEEEEeCCC----CeEe-----cc
Confidence            3466666689999999984  68889999999875  4799999886543      688999985    1111     01


Q ss_pred             ccceEeeEEEEEE
Q 030254          135 KQEHIMGRAVGFL  147 (180)
Q Consensus       135 ~~~~IiG~v~~~i  147 (180)
                      ..-.|+|+|+..+
T Consensus       173 ~~i~IiG~Vv~~~  185 (189)
T 2fjr_A          173 DDIKTLGRVVGVY  185 (189)
T ss_dssp             TSSEEEEEEEEEE
T ss_pred             cceEEEEEEEEEE
Confidence            3457999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	99.74
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	99.11
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	99.03
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.79

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.4e-18  Score=139.07  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=48.4

Q ss_pred             cCeEEEcCCCccccCcCCCEEEEEec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc
Q 030254           48 SPVVVVLSESMEPGFQRGDILFLQMS---------------KDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR  105 (180)
Q Consensus        48 ~p~~~V~~~SM~P~l~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~  105 (180)
                      +| +.|+|+||+|||..||+++++|-               ..++++||||+|+.+.. ...++||+++++||+
T Consensus         6 ~~-f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pGD~   78 (247)
T d1b12a_           6 EP-FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK   78 (247)
T ss_dssp             EE-EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred             EE-EEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCccccccccCCCCCe
Confidence            56 99999999999999999999871               14579999999998754 356999999999874

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.11  E-value=3.1e-10  Score=79.93  Aligned_cols=82  Identities=15%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             EEEcCCCc------cccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcch
Q 030254           51 VVVLSESM------EPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDR  124 (180)
Q Consensus        51 ~~V~~~SM------~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~  124 (180)
                      +.|.|+||      +|.|++||+|++++ ..+++.||+|++..++. ..++||+.... +      .++++.||...++ 
T Consensus         8 l~V~GdSM~~~~~~ep~i~~Gd~viVd~-~~~~~~g~ivva~~~~~-~~~vKr~~~~~-~------~~~L~s~N~~y~~-   77 (101)
T d1f39a_           8 LEVEGNSMTAPTGSKPSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFKKLIRDS-G------QVFLQPLNPQYPM-   77 (101)
T ss_dssp             EECCSSTTCCCTTCSSCCCTTCEEEEET-TSCCCTTCEEEEECTTS-CEEEEEEEEET-T------EEEEECSSTTSCC-
T ss_pred             EEEeCCccCCCcccCCCcCCCCEEEEEe-cCccCCCCEEEEEECCC-eEEEEEEEEcC-C------EEEEEECCCCCCC-
Confidence            78999999      89999999999998 67899999998887765 36899997643 2      5789999865332 


Q ss_pred             hhhccCCceeccceEeeEEEEE-Ec
Q 030254          125 MLYAQGQFWLKQEHIMGRAVGF-LP  148 (180)
Q Consensus       125 ~~y~~~~~~V~~~~IiG~v~~~-iP  148 (180)
                      ...      -...+|+|+|+.. ||
T Consensus        78 i~~------~~~~~IiG~Vv~s~~p   96 (101)
T d1f39a_          78 IPC------NESCSVVGKVIASQWP   96 (101)
T ss_dssp             EEC------STTCEEEEEEEEEECC
T ss_pred             CcC------CCCcEEEEEEEEEECc
Confidence            111      1346899999874 55

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=9.8e-10  Score=80.09  Aligned_cols=84  Identities=23%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             eEEEcCCCcccc-CcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESMEPG-FQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM~P~-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+||+|+ +++||++++++ ..+++.||++++..+++  ..+||+.... +      .+++..||.... +..+.
T Consensus        40 ~lrV~GdSM~~~~i~~gd~viv~~-~~~~~~G~ivv~~~~ge--~~vKrl~~~~-~------~~~L~s~N~~y~-pi~~~  108 (126)
T d1jhfa2          40 LLRVSGMSMKDIGIMDGDLLAVHK-TQDVRNGQVVVARIDDE--VTVKRLKKQG-N------KVELLPENSEFK-PIVVD  108 (126)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEE-CSCCCTTSEEEEEETTE--EEEEEEEEET-T------EEEEECSSTTCC-CEEEE
T ss_pred             EEEEcCCcccCcccCCCEEEEEec-cccccCCCEEEEEECCE--EEEEEEEEcC-C------EEEEecCCcCCC-CeEcc
Confidence            478999999997 99999999998 68899999999999864  6999998643 2      588999985432 22111


Q ss_pred             cCCceeccceEeeEEEEEE
Q 030254          129 QGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~i  147 (180)
                      ..   -..-.|+|+|+..+
T Consensus       109 ~~---~~~~~IiG~Vv~vi  124 (126)
T d1jhfa2         109 LR---QQSFTIEGLAVGVI  124 (126)
T ss_dssp             TT---TSCEEEEEEEEEEE
T ss_pred             CC---CCcEEEEEEEEEEE
Confidence            01   12247999999875

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.9e-08  Score=71.25  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=59.7

Q ss_pred             eEEEcCCCc-cccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254           50 VVVVLSESM-EPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA  128 (180)
Q Consensus        50 ~~~V~~~SM-~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~  128 (180)
                      .+.|.|+|| .|.+.+||++++++ ..+++.|||+++..+++  ..+||... .+       ...++.+|.. .++....
T Consensus        22 ~~rV~GdSM~~~gI~~GDlliVd~-~~~~~~g~ivva~i~ge--~~vKrl~~-~~-------~~~L~~~N~~-y~~i~i~   89 (105)
T d1umua_          22 FVKASGDSMIDGGISDGDLLIVDS-AITASHGDIVIAAVDGE--FTVKKLQL-RP-------TVQLIPMNSA-YSPITIS   89 (105)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEET-TSCCCTTCEEEEEETTE--EEEEEEEC-SS-------SCEEECSSTT-SCCEECC
T ss_pred             EEEEcCCccccCccCCCCEEEEEc-ccccccCcEEEEEECCE--EEEEEEEE-CC-------cEEEECCCCC-CCCEEcC
Confidence            478999999 58899999999998 67899999999999864  69999753 32       2346777654 3332211


Q ss_pred             cCCceeccceEeeEEEEEE
Q 030254          129 QGQFWLKQEHIMGRAVGFL  147 (180)
Q Consensus       129 ~~~~~V~~~~IiG~v~~~i  147 (180)
                      +    -..-.|.|+|++.+
T Consensus        90 ~----~~~~~I~GvVv~vi  104 (105)
T d1umua_          90 S----EDTLDVFGVVIHVV  104 (105)
T ss_dssp             T----TSCEEEEEEEEEEE
T ss_pred             C----CCCEEEEEEEEEEE
Confidence            1    12346999998765