Citrus Sinensis ID: 030255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MAKSLTKTPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccHHHccccccccccccccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEcccHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHcHHHHHcccccccccccEEEEEEEccccccHHccEEcccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
maksltktpkfprnketnqrVSFNnkalfdapsAVEMQRLCNKLRTLTLsssrrllfqshapihrpfhsapsskwrlsplfnypssssshitrccsypspslaaapslcsfrlplsFIQVRHVssrdrkkrrkpvtpvtsKVKKIKMKSYSSYKSrfrtmndgqvrrwhegkrhnahlkv
Flexible Loop (DISEMBL)
maksltktpkfprnketnqrvsfnnKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAAPSLCSFRLPLSFIQVrhvssrdrkkrrkpvtpvtskvkkikmksyssyksrfrtmndgqvrrwhegkrhnahlkv
Low Complexity Region (SEG)
MAKSLTKTPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKlrtltlsssrrllFQSHAPIHRPFHSAPSSKWRLSPLFNYPsssssHITRccsypspslaaapslcsFRLPLSFIQVRHVSSRDRKKRRkpvtpvtskvkkikmksyssyksRFRTMNDGQVRRWHEGKRHNAHLKV
Disordered region (IsUnstruct)
****************************F****AVEMQRLCNKLRTLTLSSSRRLLFQSH****************L**LFN*******HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRH**********************************************************
Disordered Region (DISOPRED)
*********************SFNNKALFDAPSAVEMQRLCNKLRTLTLSSS*****************************NYPSSS***********************FRLPLSFIQ*************************I*MKSYSSYKSRFRTMNDGQVRRWH***********
Disordered Region (DISEMBL)
*********KFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNY**********CCSYPSPSLAAAPSLCSFRLPLSFIQVR**********************KIKMKSYSSYKSRFRTMNDGQVRRWH***********
Disordered Region (DISPRO)
*******TPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHE**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKSLTKTPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224071431	167	predicted protein [Populus trichocarpa]	0.75	0.808	0.589	4e-31
440583722	196	similar to 50S ribosomal protein L35 [Lu	0.705	0.647	0.506	3e-26
224138324	123	predicted protein [Populus trichocarpa]	0.361	0.528	0.784	1e-22
358248355	156	uncharacterized protein LOC100814427 [Gl	0.611	0.705	0.548	2e-22
357484741	157	50S ribosomal protein L35 [Medicago trun	0.666	0.764	0.573	3e-22
297791165	170	structural constituent of ribosome [Arab	0.75	0.794	0.422	9e-21
18422571	173	Ribosomal protein L35 [Arabidopsis thali	0.766	0.797	0.422	2e-20
10177933	262	unnamed protein product [Arabidopsis tha	0.766	0.526	0.422	2e-20
356531483	155	PREDICTED: uncharacterized protein LOC10	0.633	0.735	0.490	3e-20
255647366	155	unknown [Glycine max]	0.633	0.735	0.490	3e-20

>gi|224071431|ref|XP_002303456.1| predicted protein [Populus trichocarpa] gi|222840888|gb|EEE78435.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 99/146 (67%), Gaps = 11/146 (7%)

Query: 37  MQRLCNKLRTL-TLSSSRRLLFQSHAPIHRPFH-SAPSSKWRLSP-LFNYPSSSSSHITR 93
           MQRLC KLR+L ++SSS RLL       HR  H +A S KW L+  L N  SS    +  
Sbjct: 1   MQRLCTKLRSLASVSSSHRLLHPPPQSYHRHLHFAAASRKWNLNGSLLNTSSSLPIQL-- 58

Query: 94  CCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSY 153
                 PS+AA  S    +LP S +QVRHVSSR+RKKRRKP+TP TSKVKKIKMK+YSSY
Sbjct: 59  ------PSVAAMSSSRLSQLPHSLVQVRHVSSRERKKRRKPMTPRTSKVKKIKMKAYSSY 112

Query: 154 KSRFRTMNDGQVRRWHEGKRHNAHLK 179
           K RFRTMNDG +RRW EGK HNAH K
Sbjct: 113 KERFRTMNDGTIRRWREGKNHNAHSK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583722|emb|CCH47224.1| similar to 50S ribosomal protein L35 [Lupinus angustifolius]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 91/150 (60%), Gaps = 23/150 (15%)

Query: 37  MQRLCNKLRTLTLSSSRRLL-------FQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSS 89
           MQR   KLR+  ++ SR+ L       F  HAP     HS  S+     P+FN+ SS S 
Sbjct: 1   MQRCATKLRSFAVNYSRQSLPTPSPRRFFHHAPPQPFIHSLASTNLISRPIFNF-SSFSP 59

Query: 90  HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKS 149
              R   +P+  L               +QVRHVSSR+RKKRRKP+TPVTSK+KK KMKS
Sbjct: 60  QSFRPSPFPTSLL---------------VQVRHVSSRERKKRRKPMTPVTSKLKKTKMKS 104

Query: 150 YSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           YSS+K RFR MNDG +RRW EGKRHNAHLK
Sbjct: 105 YSSFKLRFRVMNDGNIRRWKEGKRHNAHLK 134

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138324|ref|XP_002326574.1| predicted protein [Populus trichocarpa] gi|222833896|gb|EEE72373.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 57/65 (87%)

Query: 115 LSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
           L  +QVRHVSSR+RKK RKP+TP+TSKVKK KMK+YSSYK RFRTMNDG +RRW EGK H
Sbjct: 30  LQLVQVRHVSSRERKKNRKPMTPLTSKVKKFKMKAYSSYKDRFRTMNDGTIRRWREGKNH 89

Query: 175 NAHLK 179
           NAHLK
Sbjct: 90  NAHLK 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248355|ref|NP_001240123.1| uncharacterized protein LOC100814427 [Glycine max] gi|255647090|gb|ACU24013.1| unknown [Glycine max]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 86/135 (63%), Gaps = 25/135 (18%)

Query: 45  RTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAA 104
           + L+  SSRRLL   H+P  +P HSA  S +R+S     PS  SS      S+PSPSL  
Sbjct: 18  QVLSPPSSRRLLH--HSPPPQPLHSA--SNFRIS----RPSFISSSWPLHASHPSPSL-- 67

Query: 105 APSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQ 164
                        +QVRH SS++RK  RKPV P  SKVKK KMKSYSS+KSRFRTMNDG 
Sbjct: 68  -------------VQVRHASSKERK--RKPVPPTVSKVKKTKMKSYSSFKSRFRTMNDGN 112

Query: 165 VRRWHEGKRHNAHLK 179
           +RRW EGKRHNAHLK
Sbjct: 113 IRRWKEGKRHNAHLK 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484741|ref|XP_003612658.1| 50S ribosomal protein L35 [Medicago truncatula] gi|355513993|gb|AES95616.1| 50S ribosomal protein L35 [Medicago truncatula]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 98/150 (65%), Gaps = 30/150 (20%)

Query: 37  MQRLCNKLRTLTLSS----SRRLLFQSHAPIHRPFHSA---PSSKWRLSPLFNYPSSSSS 89
           MQRL  KLR+L + S    SRR L   H  + +P HSA   P S+    PLFN+ S SS 
Sbjct: 2   MQRLLPKLRSLAVQSLQPSSRRFL---HHSLPQPLHSASINPISR----PLFNF-SPSSL 53

Query: 90  HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKS 149
           H     S PSP    +PSL         +QVRHVSSR+RKK+RKP+TPV SK+KK KMKS
Sbjct: 54  H----KSLPSP---FSPSLV--------LQVRHVSSRERKKKRKPMTPVKSKLKKTKMKS 98

Query: 150 YSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           YSSYKSRFR MNDG  RRW EGKRHNAHLK
Sbjct: 99  YSSYKSRFRLMNDGTFRRWREGKRHNAHLK 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791165|ref|XP_002863467.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297309302|gb|EFH39726.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 14/149 (9%)

Query: 37  MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96
           MQR C KLR+++L S+R L F   AP HR  H +P+    L+    + +S     T+   
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFSGAAP-HRLIHHSPTR--HLTTTLGFANS-----TKWSF 52

Query: 97  YPSPSLA--AAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
            P+  ++     S+ S  +P  F+QVR+++S+++  +     +P TP+TSKVKK+K+K Y
Sbjct: 53  LPAAGVSPLNISSMGSTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 112

Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 113 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422571|ref|NP_568647.1| Ribosomal protein L35 [Arabidopsis thaliana] gi|21593524|gb|AAM65491.1| unknown [Arabidopsis thaliana] gi|26450411|dbj|BAC42320.1| unknown protein [Arabidopsis thaliana] gi|28827502|gb|AAO50595.1| unknown protein [Arabidopsis thaliana] gi|332007889|gb|AED95272.1| Ribosomal protein L35 [Arabidopsis thaliana]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 11/149 (7%)

Query: 37  MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPS-SKWRLSPLFNYPSSSS-SHITRC 94
           MQR C KLR+++L S+R L F   +P HR  H +PS S+   +    + +S+  S +   
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFYGASP-HRLIHHSPSPSRHLTTTTLGFANSTKWSFVPAA 59

Query: 95  CSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
             +PS       S+ +  +P  F+QVR+++S+++  +     +P TP+TSKVKK+K+K Y
Sbjct: 60  GVFPS----NVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 115

Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 116 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177933|dbj|BAB11198.1| unnamed protein product [Arabidopsis thaliana]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 11/149 (7%)

Query: 37  MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPS-SKWRLSPLFNYPSSSS-SHITRC 94
           MQR C KLR+++L S+R L F   +P HR  H +PS S+   +    + +S+  S +   
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFYGASP-HRLIHHSPSPSRHLTTTTLGFANSTKWSFVPAA 59

Query: 95  CSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
             +PS       S+ +  +P  F+QVR+++S+++  +     +P TP+TSKVKK+K+K Y
Sbjct: 60  GVFPS----NVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 115

Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 116 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531483|ref|XP_003534307.1| PREDICTED: uncharacterized protein LOC100808184 [Glycine max]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 84/155 (54%), Gaps = 41/155 (26%)

Query: 37  MQRLCNKLRTLTLSS--------SRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSS 88
           M R   KLR L + S        SRRLL   H P  +  HSA           N+  SS 
Sbjct: 1   MLRSLTKLRCLAVQSRQVLSPPSSRRLLH--HLPPPQSLHSAS----------NFRISSP 48

Query: 89  SHITRCC----SYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKK 144
           S I   C    S PSPSL               +QVRH SS++RK  RKPV P  SKVKK
Sbjct: 49  SFIFSWCPPHASQPSPSL---------------VQVRHASSKERK--RKPVPPTVSKVKK 91

Query: 145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
            KMKSYSS+KSRFR MNDG +RRW EGKRHNAHLK
Sbjct: 92  TKMKSYSSFKSRFRAMNDGNIRRWKEGKRHNAHLK 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647366|gb|ACU24149.1| unknown [Glycine max]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 84/155 (54%), Gaps = 41/155 (26%)

Query: 37  MQRLCNKLRTLTLSS--------SRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSS 88
           M R   KLR L + S        SRRLL   H P  +  HSA           N+  SS 
Sbjct: 1   MLRSLTKLRCLAVQSRQVLSPPSSRRLLH--HLPPPQSLHSAS----------NFRISSP 48

Query: 89  SHITRCC----SYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKK 144
           S I   C    S PSPSL               +QVRH SS++RK  RKPV P  SKVKK
Sbjct: 49  SFIFSWCPPHASQPSPSL---------------VQVRHASSKERK--RKPVPPTVSKVKK 91

Query: 145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
            KMKSYSS+KSRFR MNDG +RRW EGKRHNAHLK
Sbjct: 92  TKMKSYSSFKSRFRAMNDGNIRRWKEGKRHNAHLK 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2157151	173	AT5G45590 [Arabidopsis thalian	0.372	0.387	0.366	2.2e-12

TAIR|locus:2157151 AT5G45590 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 26/71 (36%), Positives = 38/71 (53%)

Query:   113 LPLSFIQVRHVSSRDR----KKRRXXXXXXXXXXXXXXXXXXXXXXXRFRTMNDGQVRRW 168
             +P  F+QVR+++S+++    KK+                        RF+ +NDG +RRW
Sbjct:    74 VPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFYSSFKDRFKPLNDGTIRRW 133

Query:   169 HEGKRHNAHLK 179
              EGKRHNAHLK
Sbjct:   134 KEGKRHNAHLK 144

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0270 hypothetical protein (168 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF01632	61	Ribosomal_L35p: Ribosomal protein L35; InterPro: I	98.19
PRK00172	65	rpmI 50S ribosomal protein L35; Reviewed	98.17
TIGR00001	63	rpmI_bact ribosomal protein L35. This ribosomal pr	97.88
CHL00103	65	rpl35 ribosomal protein L35	96.45
COG0291	65	RpmI Ribosomal protein L35 [Translation, ribosomal	95.79

>PF01632 Ribosomal_L35p: Ribosomal protein L35; InterPro: IPR021137 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.19  E-value=6.4e-07  Score=61.35  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=28.2

Q ss_pred             eeccccccccccceecCCcceeeeccccccccccC
Q 030255          145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       145 ~KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      .|||..++.+.||+.+++|.|.||+.|++|+..-|
T Consensus         1 pKmKT~k~a~KRFk~t~sGkikr~~agk~H~~~~K   35 (61)
T PF01632_consen    1 PKMKTHKSAAKRFKVTGSGKIKRKRAGKRHLLTKK   35 (61)
T ss_dssp             ---S-HHHHHTTEEEESSSEEEEE-SSSSSSSSSS
T ss_pred             CCccchhhhHhheeEcCCCeEEeccCCcccccccC
Confidence            38999999999999999999999999999998654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L35 is a basic protein of 60 to 70 amino-acid residues from the large subunit []. Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes []. It belongs to a family of ribosomal proteins, including L35 from bacteria, plant chloroplast, red algae chloroplasts and cyanelles. In plants it is a nuclear encoded gene product, which suggests a chloroplast-to-nucleus relocation during the evolution of higher plants [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QBE_3 2QBG_3 3SGF_7 2QOV_3 3J0Y_6 3I22_3 3E1D_W 1VS6_3 2VHN_3 1VS8_3 ....

>PRK00172 rpmI 50S ribosomal protein L35; Reviewed

Probab=98.17  E-value=8.3e-07  Score=61.94  Aligned_cols=34  Identities=44%  Similarity=0.624  Sum_probs=32.1

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+++|+|.||++|++|++..|
T Consensus         3 KmKT~k~akKRFk~T~~GKi~r~~a~k~H~~~~K   36 (65)
T PRK00172          3 KMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKK   36 (65)
T ss_pred             CcccchhhhheeEEcCCCCEEeccCCCccccccC
Confidence            8999999999999999999999999999988654

>TIGR00001 rpmI_bact ribosomal protein L35

Probab=97.88  E-value=6.5e-06  Score=57.31  Aligned_cols=34  Identities=35%  Similarity=0.546  Sum_probs=31.9

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||.-++.+.||+.+++|+|.||++|++|+...|
T Consensus         2 KmKT~~~akKRFK~T~tGKvkr~~a~k~H~l~~K   35 (63)
T TIGR00001         2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKK   35 (63)
T ss_pred             CcccchhhhhheEEcCCCCEEecccCcccccccC
Confidence            8999999999999999999999999999997654

This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein.

>CHL00103 rpl35 ribosomal protein L35

Probab=96.45  E-value=0.0018  Score=45.79  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.2

Q ss_pred             eeccccccccccceecCCcceeeecccccccccc
Q 030255          145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHL  178 (180)
Q Consensus       145 ~KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~  178 (180)
                      -|||.-++-+.||+.+.+|+|.|.++|++|..--
T Consensus         2 pKmKT~k~a~KRFKvT~sGKvkr~~a~k~H~l~k   35 (65)
T CHL00103          2 PKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQK   35 (65)
T ss_pred             CccccchhhhheeEecCCCCEEeccCCccccccC
Confidence            3899999999999999999999999999998653

>COG0291 RpmI Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]

Probab=95.79  E-value=0.0042  Score=44.63  Aligned_cols=32  Identities=38%  Similarity=0.615  Sum_probs=29.7

Q ss_pred             eccccccccccceecCCcceeeeccccccccc
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAH  177 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh  177 (180)
                      |||--++-+.||+.+.+|+|.|+++|++|-..
T Consensus         3 KmKT~k~aaKRFK~T~~Gkikr~~A~k~H~l~   34 (65)
T COG0291           3 KMKTKKGAAKRFKITGTGKIKRKHAGKRHILT   34 (65)
T ss_pred             ccchhhhhHhheeecCCCcEEecccccccccc
Confidence            78889999999999999999999999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3r8s_3	64	50S ribosomal protein L35; protein biosynthesis, R	97.9
3v2d_8	65	50S ribosomal protein L35; ribosome associated inh	97.83
2zjr_3	66	50S ribosomal protein L35; ribosome, large ribosom	97.66
3bbo_5	159	Ribosomal protein L35; large ribosomal subunit, sp	97.38

>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...

Probab=97.90  E-value=5.8e-06  Score=57.03  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+.+|+|.|+++|++|...-|
T Consensus         2 KmKT~~~a~KRFk~TgsGKikr~~a~k~H~l~kK   35 (64)
T 3r8s_3            2 KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKK   35 (64)
T ss_dssp             CCCCCTTTTTTCEECSSSCEEEECSSCSSSCTTS
T ss_pred             CCccchhhhheeEEcCCCCEEeccCCCCCCccCC
Confidence            7999999999999999999999999999987654

>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...

Probab=97.83  E-value=6.3e-06  Score=57.08  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+++|+|.||++|++|...-|
T Consensus         3 KmKT~~ga~KRFk~TgsGKikr~~a~k~H~l~kK   36 (65)
T 3v2d_8            3 KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQK   36 (65)
T ss_dssp             CCCCCHHHHTTEEECTTSCEEEECSSCSSCCTTS
T ss_pred             CcccchhhhheeEEcCCCCEEeccCCCCCCccCC
Confidence            7999999999999999999999999999987654

>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...

Probab=97.66  E-value=1.6e-05  Score=55.35  Aligned_cols=34  Identities=35%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+.+|+|.||++|++|...-|
T Consensus         3 KmKT~~gaaKRFk~TgsGKikr~~a~k~H~l~kK   36 (66)
T 2zjr_3            3 KMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGK   36 (66)
T ss_pred             CcccchhhhheeEEcCCCcEEeccCCCccCcccC
Confidence            8999999999999999999999999999987644

>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=97.38  E-value=5.6e-05  Score=60.72  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=32.1

Q ss_pred             eeeccccccccccceecCCcceeeeccccccccccC
Q 030255          144 KIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       144 K~KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      ..|||..++.+.||+.+.+|+|.||++||+|...-|
T Consensus        89 MPKMKThsgAaKRFKvTgSGKiKR~kAgkrHiLtkK  124 (159)
T 3bbo_5           89 GYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKK  124 (159)
T ss_dssp             --CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSC
T ss_pred             CcccccchhhhheeEEcCCccEEeccCCCCCCcCcC
Confidence            789999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2j0181	64	d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus	1e-04
d2qam31	64	d.301.1.1 (3:1-64) Ribosomal protein L35p {Escheri	7e-04

>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]} Length = 64

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           KMK++   K R +    G+V     GKRH    K
Sbjct: 2   KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQK 35

>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (79), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
           K+K+      RF+    G  +  H   RH    K
Sbjct: 2   KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKK 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d2qam31	64	Ribosomal protein L35p {Escherichia coli [TaxId: 5	98.11
d2j0181	64	Ribosomal protein L35p {Thermus thermophilus [TaxI	98.09
d2zjr31	63	Ribosomal protein L35p {Deinococcus radiodurans [T	97.21

>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=4.6e-07  Score=60.55  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+++|+|.||++|++|+..-|
T Consensus         2 KmKT~k~akKRfkvT~sGKi~r~~agk~H~l~~K   35 (64)
T d2qam31           2 KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKK   35 (64)
T ss_dssp             CCCCCTTTTTTCCCCSSSCCCBCCSSSSSCCTTS
T ss_pred             CCccchhhhhheeECCCCCEeeccCCCCcccccC
Confidence            8999999999999999999999999999998654

>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=4.7e-07  Score=60.66  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             eccccccccccceecCCcceeeeccccccccccC
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK  179 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~K  179 (180)
                      |||..++.+.||+.+++|+|.||++|++|+...|
T Consensus         2 KmKT~k~a~KRFk~T~sGKikr~~ag~~H~l~~K   35 (64)
T d2j0181           2 KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQK   35 (64)
T ss_dssp             CCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCS
T ss_pred             CCccchhhhhheeEcCCCCEEecccCCccccccC
Confidence            8999999999999999999999999999997654

>d2zjr31 d.301.1.1 (3:2-64) Ribosomal protein L35p {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.21  E-value=5.4e-05  Score=50.51  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=30.9

Q ss_pred             eccccccccccceecCCcceeeecccccccccc
Q 030255          146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHL  178 (180)
Q Consensus       146 KiK~ySSyK~RFR~m~dG~irRwr~GKrHnAh~  178 (180)
                      |||..++-+.||+.+++|+|.|.++|++|...-
T Consensus         2 KmKT~k~a~KRFk~T~sGKv~r~~agk~H~l~k   34 (63)
T d2zjr31           2 KMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTG   34 (63)
T ss_pred             CcccchhhhhheeECCCCCEeeccCCccccccc
Confidence            799999999999999999999999999998653